BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148289.13 - phase: 0
(2306 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 2452 0.0
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 1717 0.0
ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica... 897 0.0
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 771 0.0
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 771 0.0
gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sati... 770 0.0
ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultiva... 701 0.0
gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonic... 699 0.0
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18... 697 0.0
ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultiva... 697 0.0
ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultiv... 697 0.0
ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cu... 696 0.0
gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cul... 695 0.0
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva... 695 0.0
ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (jap... 695 0.0
gb|AAV25234.1| putative polyprotein [Oryza sativa (japonica cult... 694 0.0
gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonic... 693 0.0
ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cu... 692 0.0
ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultiva... 687 0.0
gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultiva... 687 0.0
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 2452 bits (6355), Expect = 0.0
Identities = 1293/2333 (55%), Positives = 1632/2333 (69%), Gaps = 155/2333 (6%)
Query: 41 AQIQAQAQALAQAQTQAQAVTEAQARSQAPPPPPPIRTQAEASSSWTLCADTPTQSAPQR 100
AQ Q +AQ Q + +A+ + R +A PPP +A DTP + P
Sbjct: 16 AQFMHMMQGVAQGQEELRALVQ---RQEAVTPPPN-----QALPEGNPVHDTPAAAIPVN 67
Query: 101 SAPWFPPFTAGEIFRPITCEAQMPTHQYTAQVPLPAMRVTPATMTYSAPVIHTVPQTEEP 160
+ + GE I + Q P A RV A P+ V + E+
Sbjct: 68 N------YAVGEELMGIRVDGQ-PIAPDAANA-----RVIHAPARNRIPI---VDRQEDL 112
Query: 161 IFHSGNVEAYEEVNDLRE-KYDELRRDMKALREKGKFGKTAYDLCLVPSVQVPHKFKIPD 219
E ND R+ K D L ++A+ + G ++ LV +++P+KFK P
Sbjct: 113 FTMFSEDEDIPGRNDARDRKVDALAEKIRAMECQNSLGFDVTNMGLVEGLRIPYKFKAPS 172
Query: 220 FEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTNLDKTRIQTFRD 279
F+KY G+SCP H++ Y R++ AY D+++ +Y+FQ+SL+G + WY L I+ +RD
Sbjct: 173 FDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKSDSIRCWRD 232
Query: 280 LCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSPRIEEKEMTKLF 339
L EAF+ QY +N+DM P R+ LQ++ Q E+FKEYAQRWR+ AA+V P + E+E+T +F
Sbjct: 233 LGEAFLRQYKHNMDMAPSRTQLQSLCQKSNESFKEYAQRWRELAARVQPPMLERELTDMF 292
Query: 340 LKTLNHFYYKKMVGSTP-KSFAEMVGMGVQLEEGVREGRLVKNTTPVSGTKKTGNHFPRK 398
+ TL + +M GS P SF+++V G + E ++ G++ S +KK PR+
Sbjct: 293 IGTLQGVFMDRM-GSCPFGSFSDVVICGERTESLIKTGKI--QDVGSSSSKKPFAGAPRR 349
Query: 399 KEQEVGMVTHGGPQQTYPAYQHIAAITPTSHPFQQTNNHPQIPQYPQIPQYPQFPQNPSP 458
+E E V H Q Y+ AA+T P+P
Sbjct: 350 REGETNAVQHRRDQNRIE-YRQAAAVTI-----------------------------PAP 379
Query: 459 QNVQPQSVQQQNFQQQPYQQQPYQQQPYQQYPYQQYPQQNFQQQPYQQRPQQPRPPRMPI 518
Q P+ QQQ QQ PQQ QQ+PYQ P+Q P R
Sbjct: 380 Q---PRQQQQQRVQQ---------------------PQQQQQQRPYQ--PRQRMPDRR-F 412
Query: 519 NPIPVTYAELLPGLLKKNLVQTRTAPPIPEKLPSWYRLDQTCDFHEGGRGHNIETCYAFK 578
+ +P++YAELLP LL+ LV+ T P P LP Y + CDFH G GH+ E C A +
Sbjct: 413 DSLPMSYAELLPELLRLGLVELCTMAP-PTVLPPGYDANVRCDFHSGAPGHHTEKCRALQ 471
Query: 579 STVQKLINDGKITFTDSAPNVQTNPLPNHGAATVNMIEDCQKTRPILNVQRIRTPLVPLH 638
VQ LI+ I F PNV NP+P HG VN IE + + NV ++T L+ +
Sbjct: 472 HKVQDLIDANAINFAP-VPNVVNNPMPQHGGHRVNNIEGKEAEDLVDNVDDVQTSLLVVK 530
Query: 639 AKLCKVDLFEHDHDLCEICLMNSGGCQKVRNDIQGLLDRGELVVERKCDD---VCVIT-- 693
++L ++ + C C + GC ++R IQG++D G L R D V IT
Sbjct: 531 SRLLNEGVYSGCDEDCLGCAESENGCDQLRAGIQGMMDEGCLQFSRAVKDRGTVSTITIY 590
Query: 694 ---PEGPLEVFYDSRKSTITPLVICLP------------GPLPYASEKAIPYKY------ 732
EG + + + TP+ I +P G + +A+P+KY
Sbjct: 591 FKPSEGHGQRVVSAPATNGTPVTIPVPVTISAPTTIVASGRRAVENSRAVPWKYDNAYRS 650
Query: 733 -----------NATMIEEG--REVPIPPLSSVDNVVEDSRVLRNGRVVPIVFPKKIDAII 779
N T + G VP +VDNV R+GR+ + +A
Sbjct: 651 NRRVESQTKPVNQTPVTIGLANRVPATVGPAVDNVGGPGGFTRSGRLFAPQPLRDNNAEA 710
Query: 780 NKEVRTKDAGIAKEVDQPNGAGTSAEFD--EILKLIKKSEYKVVDQLMQTPSKISIMSLL 837
+ + K A + +E Q S E D E +K+IKKS+YK+VDQL QTPSKISI+SLL
Sbjct: 711 LAKAKGKQAVVEEEPVQKEAPEGSFEKDVEEFMKMIKKSDYKIVDQLNQTPSKISILSLL 770
Query: 838 LNSEAHKDALMKVLEQAFVDYDVTVGQFGGIVGNITACNNLSFSDEELPAEGRNHNRALH 897
L SEAH++AL+K+L A+V +++V Q G++ N++ + + F++ +LP EGRNHN+ALH
Sbjct: 771 LCSEAHRNALLKMLNLAYVPQEISVNQLEGVMANVSTRHGVGFTNLDLPPEGRNHNKALH 830
Query: 898 ISVNCKTDALSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKAFDGSRKDVLGEV 957
I++ CK LS+VLVDTGSSLNVL K ++ +G L S ++V+AFD S++ V GEV
Sbjct: 831 ITMECKGAVLSHVLVDTGSSLNVLPKQILKKIDVEGFVLTPSDLIVRAFDRSKRSVCGEV 890
Query: 958 VLPITVGPQVFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLKFVKNGKLVTVNG 1017
LP+ +GP+VF + F VMDIQ +YSCLLGRPWIH AGAV+STLHQKLK+V NG++VTV G
Sbjct: 891 TLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCG 950
Query: 1018 EEALLVSHLSSFSFIGADN-VEGTPFQGFT------IEDKNTKRNEASISSLKDAQKVIQ 1070
EE +LVSHLSSF ++ D + T Q F + ++ SI+S K A++V+
Sbjct: 951 EEEILVSHLSSFKYVEVDGEIHETLCQVFETVALEKVAYAEQRKPGVSITSYKQAKEVVD 1010
Query: 1071 AGGSTSWGKLIELPENKHREGLGFFPSTGLSTAKKG--TFHSSGFIHAIIGD-------- 1120
+G + WGK+++LP + + G+G+ P + G TF S+G ++ GD
Sbjct: 1011 SGKAEGWGKMVDLPVKEDKFGVGYEPLQAEQNGQAGPSTFTSAGLMNH--GDVSATGSED 1068
Query: 1121 -DPESVPRGFI---TPGVSSHNWVAIDVPFVAHLSKLEIDEPVEQHNPMISPNFEFHVYE 1176
D + ++ PG S +NW A +V V L++ ++ + + +F+ +Y+
Sbjct: 1069 CDSDCDLDNWVRPCAPGGSINNWTAEEVVQVTLLTESDLMAFTMNGSVIAQYDFDNPIYQ 1128
Query: 1177 AEEEENE--EIPDEISRLLEQEKKTIQPYGDELEVINLGTKEDKKEIKVGASLETSVKKQ 1234
AEEE E E+P E+ RLL+QE++ IQP+ +ELEV+NLGT++ +EIK+GA+LE SVK++
Sbjct: 1129 AEEESEEDCELPAELVRLLKQEERVIQPHQEELEVVNLGTEDATREIKIGAALEDSVKRR 1188
Query: 1235 VIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQ 1294
+IE+L+EYV++FAWSYQDMPGLDTDIVVH LPL+ CP VKQKLRRT PDMA KIKEEVQ
Sbjct: 1189 LIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMATKIKEEVQ 1248
Query: 1295 KQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDST 1354
KQ DAGFL ++YP W+ANIVPVPKKDGKVRMCVDYRDLN+ASPKDDFPLPHIDVLVD+T
Sbjct: 1249 KQWDAGFLAVTSYPPWMANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPHIDVLVDNT 1308
Query: 1355 AKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 1414
A+S VFSFMDGFSGYNQIKMAPED EKT+FITPWGTFCYKVMPFGL NAGATYQR MTTL
Sbjct: 1309 AQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFCYKVMPFGLKNAGATYQRAMTTL 1368
Query: 1415 FHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLG 1474
FHDM+HKEIEVYVDDMI KS TEE+H+ LQK+F RLRK+KLRLNPNKCTFGVRSGKLLG
Sbjct: 1369 FHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFGVRSGKLLG 1428
Query: 1475 FIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1534
FIVS+KGIEVDP KVKAI+EMP P+TEK+VRGFLGRLNYI+RFISH+TATC PIFKLLRK
Sbjct: 1429 FIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLTATCEPIFKLLRK 1488
Query: 1535 EQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQQDETGRK 1594
Q I W +DCQKAFD IK+YL +PPILIPPV GRPLIMYL+V ENSMGCVLG+ DE+GRK
Sbjct: 1489 NQAIKWNDDCQKAFDKIKEYLQKPPILIPPVPGRPLIMYLSVTENSMGCVLGRHDESGRK 1548
Query: 1595 EHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKP 1654
EHAIYYLSKKFT+CE+RYS+LEKTCCALAWAA+RLR YM+NHTT L+SKMDP+KYIFEKP
Sbjct: 1549 EHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDPVKYIFEKP 1608
Query: 1655 ALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKM 1714
ALTGR+ARWQM+L+EYDI+ SQKAIKGSIL+D+LA QP+EDY+P+ F+FPDE+IMYLKM
Sbjct: 1609 ALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPDEDIMYLKM 1668
Query: 1715 KDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIA 1774
KDC EPL EGPDPD W L+FDGAVN+ GNG+GAVL+ PKGAH+PF+ARL FD TNN A
Sbjct: 1669 KDCKEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHMPFSARLTFDVTNNEA 1728
Query: 1775 EYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNK 1834
EYEACIMGIEEAIDLRIK ++I+GDSALV+NQ+ G W T LIPYRDY RR+LTFF K
Sbjct: 1729 EYEACIMGIEEAIDLRIKTLDIFGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKK 1788
Query: 1835 VELHHIPRDENQMADALATLSSMIKVNHHNDVPLISVKFLDRPAYVFAAE-VVFDDKPWF 1893
V+L+H+PRDENQMADALATLSSMIKVN N VP ++V L+RPAYVFAAE VV D+KPW+
Sbjct: 1789 VKLYHVPRDENQMADALATLSSMIKVNWWNHVPHVAVNRLERPAYVFAAESVVIDEKPWY 1848
Query: 1894 HDIKVFLQTREYPPGASNKDKKTLRRLSSNFFLN-GDILYKRNFDTVLLRCVDKYEADLL 1952
+DIK FL+T+EYP GAS DKKTLRRL+ +F+LN D+LYKRNFD VLLRC+D+ EAD+L
Sbjct: 1849 YDIKNFLKTQEYPEGASKNDKKTLRRLAGSFYLNQDDVLYKRNFDMVLLRCMDRPEADML 1908
Query: 1953 IHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTL 2012
+ E+HEGSFG H GH MAKK+LRAGYYWMTMESDC+K+ RKCHKCQIYAD++H+PP+ L
Sbjct: 1909 MQEVHEGSFGTHAGGHAMAKKLLRAGYYWMTMESDCFKYARKCHKCQIYADRVHVPPSPL 1968
Query: 2013 NLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIK 2072
N+++SPWPF+MWGIDMIG+IEP ASNGHRFILVAIDYFTKWVEAASYAN+TKQVV +FIK
Sbjct: 1969 NVMNSPWPFAMWGIDMIGKIEPTASNGHRFILVAIDYFTKWVEAASYANITKQVVTRFIK 2028
Query: 2073 NHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKR 2132
IICRYG+P RIITDNG+NLNNKMMKELC DFKIEHHNSSPYRP+MNGAVEAANKNIK+
Sbjct: 2029 KEIICRYGVPERIITDNGSNLNNKMMKELCKDFKIEHHNSSPYRPKMNGAVEAANKNIKK 2088
Query: 2133 IVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLME 2192
IV+KMVVTYKDWHEMLPFALHGYRTSVRTSTGATP+SLVYGMEAVLPVEVEIPSLRVL++
Sbjct: 2089 IVRKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPYSLVYGMEAVLPVEVEIPSLRVLLD 2148
Query: 2193 ADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKI 2252
L EAEW++ R+++L+LIEE+R+ +CHGQLYQ+RMK+AFD+KVRPR ++ GDLVLK+I
Sbjct: 2149 VKLDEAEWIRTRFNELSLIEERRLAVVCHGQLYQRRMKRAFDQKVRPRSYQIGDLVLKRI 2208
Query: 2253 FSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
D+RGKW PNYEGPYVVK+ FSGGA+ L TMDGE+ P PVN+D VKKYF
Sbjct: 2209 LPPGTDNRGKWTPNYEGPYVVKKVFSGGALMLTTMDGEDFPSPVNSDVVKKYF 2261
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 1717 bits (4447), Expect = 0.0
Identities = 945/1902 (49%), Positives = 1225/1902 (63%), Gaps = 161/1902 (8%)
Query: 24 EMAELIKTMAETQTQAQAQIQAQAQALAQAQTQAQAVTEAQARSQAPPPPPPIRTQAEAS 83
E+AE+ MA+ Q Q Q + A Q Q A+ + APP P+
Sbjct: 7 ELAEMKANMAQFMNMMQGVAQGQEELRALVQRQEAAIPPV---NHAPPEGGPVNGN---- 59
Query: 84 SSWTLCADTPTQSAPQRSAPWFPPFTAGEIFRPITCEAQMPTHQYTAQVPLPAMRVTPAT 143
+ A P + + G+ I Q P A R A
Sbjct: 60 ---NVAAAVPINN-----------YAVGDELGGIRINGQ-PIAPDVANA-----RAVRAP 99
Query: 144 MTYSAPVIHTVPQTEEPIFH--SGNVEAYEEVNDLREKYDELRRDMKALREKGKFGKTAY 201
AP++ +E +F S + + V++ K D L ++A+ + G
Sbjct: 100 ARNPAPIV----DRQEDMFSLLSEDEDVLGRVDERDRKVDALAEKIRAMECQNSLGFDVT 155
Query: 202 DLCLVPSVQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGP 261
++ LV +++P+KFK P F+KY G+SCP H++ Y R++ AY D+++ +Y+FQ+SL+G
Sbjct: 156 NMGLVEGLRIPYKFKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGA 215
Query: 262 ASKWYTNLDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRD 321
+ WY L + I+ ++DL EAF+ QY +N+DM P R+ LQ++ Q E+FKEYAQRWR+
Sbjct: 216 SLDWYMELKRDSIRCWKDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFKEYAQRWRE 275
Query: 322 TAAQVSPRIEEKEMTKLFLKTLNHFYYKKMVGSTP-KSFAEMVGMGVQLEEGVREGRLVK 380
AA+V P + E+E+T +F+ TL + +M GS P SF+++V G + E ++ G++
Sbjct: 276 LAARVQPPMLERELTDMFIGTLQGVFMDRM-GSCPFVSFSDVVICGERTESLIKTGKI-- 332
Query: 381 NTTPVSGTKKTGNHFPRKKEQEVGMVTHGGPQQTYPAYQHIAAITPTSHPFQQTNNHPQI 440
S +KK PR++E E V + Q Q A P P QQ Q
Sbjct: 333 QDAGSSSSKKPFAGAPRRREGETNAVQYRRDQNRSQRCQVAAVTIPAPQPRQQQQQRVQQ 392
Query: 441 PQYPQIPQYPQFPQNPSPQNVQPQSVQQQNFQQQPYQQQPYQQQPYQQYPYQQYPQQNFQ 500
P QQQ QQ+PYQ P Q+ P + F
Sbjct: 393 P------------------------------QQQQQQQRPYQ-------PRQRMPDRRF- 414
Query: 501 QQPYQQRPQQPRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAPPIPEKLPSWYRLDQTC 560
+ +P++YAELLP LL+ +V+ RT P P LP Y + C
Sbjct: 415 ------------------DSLPMSYAELLPELLRLGMVELRTMAP-PTVLPPGYDANVRC 455
Query: 561 DFHEGGRGHNIETCYAFKSTVQKLINDGKITFTDSAPNVQTNPLPNHGAATVNMIEDCQK 620
DFH G GH+ E C A + VQ LI+ I F PNV NP+P HG VN IE +
Sbjct: 456 DFHSGAPGHHTEKCRALQHKVQDLIDAKAINFA-PVPNVVNNPMPQHGGHRVNNIEGKEA 514
Query: 621 TRPILNVQRIRTPLVPLHAKLCKVDLFEHDHDLCEICLMNSGGCQKVRNDIQGLLDRGEL 680
++NV ++T L+ + +L ++ + C C + GC ++R IQG++D G L
Sbjct: 515 EDLVVNVDDVQTSLLVVKGRLLNGGVYSGCDEDCLGCAESENGCDQLRTGIQGMMDEGCL 574
Query: 681 VVERKCDD---VCVIT-----PEGPLEVFYDSRKSTITPLVICLP------------GPL 720
R D V IT EG + + + TP+ I +P G
Sbjct: 575 QFSRAVKDRGTVSTITIYFKPSEGRGQRVVSAPATNGTPVTISVPVTISAPTTIAASGRR 634
Query: 721 PYASEKAIPYKYNATMIEEGR-------------------EVPIPPLSSVDNVVEDSRVL 761
+ +A+P+KY+ R VP +VDNV
Sbjct: 635 AVENSRAVPWKYDNAYRSNRRAESQTRPVNQAPVTIGLPNRVPATVGPAVDNVGGPGGFT 694
Query: 762 RNGRVVPIVFPKKIDAIINKEVRTKDAGIAKEVDQPNGAGTSAEFD--EILKLIKKSEYK 819
R+GR+ + +A + + K A + +E Q S E D E +K+IKKS+YK
Sbjct: 695 RSGRLFAPQPLRDNNAEALAKAKGKQAVVEEEPVQKEAPEGSFEKDVEEFMKIIKKSDYK 754
Query: 820 VVDQLMQTPSKISIMSLLLNSEAHKDALMKVLEQAFVDYDVTVGQFGGIVGNITACNNLS 879
+VDQL QTPSKISI+SLLL SEAH++AL+K+L A+V +++V Q G++ N++ + +
Sbjct: 755 IVDQLNQTPSKISILSLLLCSEAHRNALLKMLNLAYVPQEISVNQLEGVMANVSTRHGVG 814
Query: 880 FSDEELPAEGRNHNRALHISVNCKTDALSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRS 939
F++ +L EGRNHN+ALHI++ CK LS+VLVDTGSSLNVL K ++ +G L S
Sbjct: 815 FTNLDLTPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNVLPKQILKKIDVEGFVLTPS 874
Query: 940 GVMVKAFDGSRKDVLGEVVLPITVGPQVFQVNFQVMDIQASYSCLLGRPWIHEAGAVTST 999
++V+AFDGS++ V GEV LP+ +GP+VF + F VMDIQ +YSCLLGRPWIH AGAV+ST
Sbjct: 875 DLIVRAFDGSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSST 934
Query: 1000 LHQKLKFVKNGKLVTVNGEEALLVSHLSSFSFIGAD-NVEGTPFQGF------TIEDKNT 1052
LHQKLK+V NG++VTV GEE +LVSHLSSF ++ D + T Q F +
Sbjct: 935 LHQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETLCQAFETVALEKVAYAEQ 994
Query: 1053 KRNEASISSLKDAQKVIQAGGSTSWGKLIELPENKHREGLGFFPSTGLSTAKKG--TFHS 1110
++ ASI+S K A++V+ +G + WGK++ LP + + G+G+ P + G TF S
Sbjct: 995 RKPGASITSYKQAKEVVDSGKAEGWGKMVYLPVKEDKFGVGYEPLQAEQNGQAGPSTFTS 1054
Query: 1111 SGFIHAIIGD---------DPESVPRGFI---TPGVSSHNWVAIDVPFVAHLSKLEIDEP 1158
+G ++ GD D + ++ PG S +NW A +V V L++ ++
Sbjct: 1055 AGLMNH--GDVSATGSEDCDSDCDLDNWVRPCAPGGSINNWTAEEVVQVTLLTESDLMAF 1112
Query: 1159 VEQHNPMISPNFEFHVYEAEEEENE--EIPDEISRLLEQEKKTIQPYGDELEVINLGTKE 1216
++ M +F +Y+AEEE E E+P E+ RLL QE++ IQP+ +ELEV+NLGT++
Sbjct: 1113 TMNNSVMAQYDFGNPIYQAEEESEEDCELPAELVRLLRQEERVIQPHQEELEVVNLGTED 1172
Query: 1217 DKKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQ 1276
K+EIK+GA+LE SVK+++IE+L+EYV++FAWSYQDMPGLDTDIVVH LPL+ CP VKQ
Sbjct: 1173 AKREIKIGAALEDSVKRRLIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQ 1232
Query: 1277 KLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKA 1336
KLRRT PDMA KIKEEVQKQ DAGFL ++YP W+ANIVPVPKKDGKVRMCVDYRDLN+A
Sbjct: 1233 KLRRTSPDMATKIKEEVQKQWDAGFLAVTSYPPWVANIVPVPKKDGKVRMCVDYRDLNRA 1292
Query: 1337 SPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVM 1396
SPKDDFPLPHIDVLVD+TA+S VFSFMDGFSGYNQIKMAPED EKT+FITPWGTF YKVM
Sbjct: 1293 SPKDDFPLPHIDVLVDNTAQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFYYKVM 1352
Query: 1397 PFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKL 1456
PFGL NAGATYQR MTTLFHDM+HKEIEVYVDDMI KS TEE+H+ LQK+F RLRK+KL
Sbjct: 1353 PFGLKNAGATYQRAMTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKL 1412
Query: 1457 RLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISR 1516
RLNPNKCTFGVRSGKLLGFIVS+KGIEVDP KVKAI+EMP P+TEK+VRGFLGRLNYI+R
Sbjct: 1413 RLNPNKCTFGVRSGKLLGFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIAR 1472
Query: 1517 FISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTV 1576
FISH+TATC PIFKLLRK Q I W +DCQKAFD IK+YL +PPIL PPV GRPLIMYL+V
Sbjct: 1473 FISHLTATCEPIFKLLRKNQAIKWNDDCQKAFDKIKEYLQKPPILTPPVPGRPLIMYLSV 1532
Query: 1577 LENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINH 1636
ENSMGCVLGQ DE+GRKEHAIYYLSKKFT+CE+RYS+LEKTCCALAWAA+RLR YM+NH
Sbjct: 1533 TENSMGCVLGQHDESGRKEHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNH 1592
Query: 1637 TTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLED 1696
TT L+SKMDP+KYIFEKPALTGR+ARWQM+L+EYDI+ SQKAIKGSIL+D+LA QP+ED
Sbjct: 1593 TTLLISKMDPVKYIFEKPALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIED 1652
Query: 1697 YRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKG 1756
Y+P+ F+FPDE+IMYLK+KDC+EPL EGPDPD W L+FDGAVN+ GNG+GAVL+ PKG
Sbjct: 1653 YQPMMFEFPDEDIMYLKVKDCEEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKG 1712
Query: 1757 AHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHA 1816
AHIPF+ARL FD TNN AEYEACIMGIEEAIDLRIK ++IYGDSALV+NQ+ G W T
Sbjct: 1713 AHIPFSARLTFDVTNNEAEYEACIMGIEEAIDLRIKTLDIYGDSALVVNQVNGDWNTNQP 1772
Query: 1817 GLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMI 1858
LIPYRDY RR+LTFF KV L+H+PRDENQMADALATLSSMI
Sbjct: 1773 HLIPYRDYTRRILTFFKKVRLYHVPRDENQMADALATLSSMI 1814
>ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 897 bits (2317), Expect = 0.0
Identities = 483/1156 (41%), Positives = 701/1156 (59%), Gaps = 46/1156 (3%)
Query: 1173 HVYEAEEEENEEIPDEISRLLEQEKKTIQPYGDELEVINLGTKEDKKEIKVGASLETSVK 1232
H +E EE D ++ L+Q QP DEL +NLGT++D + I V L +
Sbjct: 1745 HPFEVAAVGVEEELD-VAGALKQLDDGGQPTIDELVEMNLGTEDDPRPIFVSGMLTEEER 1803
Query: 1233 KQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEE 1292
+ L E+ D FAW+Y++MPGLD+ + H L + P+ PVKQ RR RP+ ++ E
Sbjct: 1804 EDYRSFLMEFRDCFAWTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAE 1863
Query: 1293 VQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVD 1352
V + I+ GF+ YP+WLANIVPV KK+G+VR+CVD+RDLN+A PKDDFPLP +++VD
Sbjct: 1864 VDRLINVGFIKEIQYPRWLANIVPVEKKNGQVRVCVDFRDLNRACPKDDFPLPITEMVVD 1923
Query: 1353 STAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMT 1412
ST SGYNQIKM D T+F TP G F Y VMPFGL NAGATYQR M
Sbjct: 1924 STTG------YGALSGYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQRAMQ 1977
Query: 1413 TLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKL 1472
+ D+IH +E YVDDM+VK+ E H + L+ +F+RLR+++L++NP KC F V+SG
Sbjct: 1978 FVLDDLIHHSVECYVDDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVF 2037
Query: 1473 LGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLL 1532
LGF++ +GIE++P K+KAI MP P+ K++R G+L YI RFIS+++ P KL+
Sbjct: 2038 LGFVIRHRGIEIEPKKIKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLM 2097
Query: 1533 RKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQQDETG 1592
+K VW E+CQ FDSIK+YLL PP+L PV+GRPLI+Y+ S+G +L Q ++ G
Sbjct: 2098 KKGTPFVWDEECQNGFDSIKRYLLNPPVLAAPVKGRPLILYIATQPASIGALLAQHNDEG 2157
Query: 1593 RKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFE 1652
KE A YYLS+ E YS +EK C AL +A K+LRHYM+ H L+++ DPI+Y+
Sbjct: 2158 -KEVACYYLSRTMVGAEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRYVLS 2216
Query: 1653 KPALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYL 1712
+P LTGR+ +W +L+ EYDI QKAIKG LA+ LA P+ D P+ + PDEEI
Sbjct: 2217 QPVLTGRLGKWALLMMEYDITFVPQKAIKGQALAEFLATHPMPDDSPLIANLPDEEIFTA 2276
Query: 1713 KMKDCDEPLFGEGPDPDSVWGLIFDGA----VNVYGN-----GIGAVLLTPKGAHIPFT- 1762
++++ W L FDGA +N G G G V TP+G I +
Sbjct: 2277 ELQE--------------QWELYFDGASRKDINPDGTPRRRAGAGLVFKTPQGGVIYHSF 2322
Query: 1763 ARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYR 1822
+ L+ +C+NN AEYEA I G+ A+ + ++++ +GDS L+I QI +E L+PY
Sbjct: 2323 SLLKEECSNNEAEYEALIFGLLLALSMEVRSLRAHGDSRLIIRQINNIYEVRKPELVPYY 2382
Query: 1823 DYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKVNHHNDVPLISVKFLDRPAY--V 1880
ARRL+ F +E+ H+PR +N ADALA L++ + N ++ + PA +
Sbjct: 2383 TVARRLMDKFEHIEVIHVPRSKNAPADALAKLAAALVFQGDNPAQIVVEERWLLPAVLEL 2442
Query: 1881 FAAEVVF------DDKPWFHDIKVFLQTREYPPGASNKDKKTLRRLSSNFFLNGDILYKR 1934
EV +++ W + + P +++ L+R ++ +LYKR
Sbjct: 2443 IPEEVNIIITNSAEEEDWRQPFLDYFKHGSLP--EDPVERRQLQRRLPSYIYKAGVLYKR 2500
Query: 1935 NF-DTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTR 1993
++ VLLRCVD+ EA+ ++ E+H G G H +G M I GYYW + +DC K +
Sbjct: 2501 SYGQEVLLRCVDRSEANRVLQEVHHGVCGGHQSGPKMYHSIRLVGYYWPGIMADCLKTAK 2560
Query: 1994 KCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKW 2053
CH CQI+ + H PP L+ WPF WGID+IG I P +S GHRFIL A DYF+KW
Sbjct: 2561 TCHGCQIHDNFKHQPPAPLHPTVPSWPFDAWGIDVIGLINPPSSRGHRFILTATDYFSKW 2620
Query: 2054 VEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSS 2113
EA V V+ F++ HII R+G+P+RI +DN ++ + + +KI+ + S+
Sbjct: 2621 AEAVPLREVKSSDVINFLERHIIYRFGVPHRITSDNAKAFKSQKIYRFMEKYKIKWNYST 2680
Query: 2114 PYRPQMNGAVEAANKNIKRIVQKMVVTY-KDWHEMLPFALHGYRTSVRTSTGATPFSLVY 2172
Y PQ NG EA NK + +I++K V + +DWH+ L AL YR +VRT T ATP+SLVY
Sbjct: 2681 GYYPQANGMAEAFNKTLGKILKKTVDKHRRDWHDRLYEALWAYRVTVRTPTQATPYSLVY 2740
Query: 2173 GMEAVLPVEVEIPSLRVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQA 2232
G EAVLP+E+++PSLRV + +L++ E ++ R+ +L+ +EE+R+ AL + +LY++ M +A
Sbjct: 2741 GNEAVLPLEIQLPSLRVAIHDELTKDEQIRLRFQELDAVEEERLGALQNLELYRQNMVRA 2800
Query: 2233 FDKKVRPREFKEGD--LVLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGE 2290
+DK V+ R F++G+ LVL++ +GK+ P +EGPYV+++A+ GGA L G
Sbjct: 2801 YDKLVKQRVFRKGELVLVLRRPIVVTHKMKGKFEPKWEGPYVIEQAYDGGAYQLIDHQGS 2860
Query: 2291 ELPRPVNTDAVKKYFV 2306
+ P+N +KKYFV
Sbjct: 2861 QPMPPINGRFLKKYFV 2876
Score = 119 bits (299), Expect = 9e-25
Identities = 86/291 (29%), Positives = 141/291 (47%), Gaps = 18/291 (6%)
Query: 741 REVPIPPLSSVDNVVEDSRV-LRNGRVVPIVFPKKIDAIINKEVRTKDAGIAKEVDQPNG 799
RE+ L VE+ + LR G+ +P K+ + AK+ P
Sbjct: 1237 REIFHAELDPEKTKVEEVNISLRGGKTLPDPHKSKVPNVDKP---------AKKASPPGE 1287
Query: 800 AGTSAEFDEILKLIKKSEYKVVDQLMQTPSKISIMSLLLNSEAHKDALMKVLEQAFVDYD 859
A + E K +YKV+ L + P+ +S+ L+ ++AL+K L+ V Y+
Sbjct: 1288 APEAPETKTGSKEKPAVDYKVLAHLKRIPALLSVYDALMMVPDLREALIKALQAPEV-YE 1346
Query: 860 VTVGQFGGIVGNITACNNLSFSDEELPAEGRNHNRALHISVNCKTDALSNVLVDTGSSLN 919
V + + + N N ++F+DE+ +G +HNR L+I N + L +L+D GS++N
Sbjct: 1347 VDMAKHR-LYDNPLFVNEITFADEDNIIKGGDHNRPLYIEGNIGSAHLRRILIDLGSAVN 1405
Query: 920 VLSKTTYTQLAYQGAPLRRSGVMVKAFDGSRKDVLGEVVLPITVGPQVFQVNFQVMDIQA 979
+L + T+ + L V++ FD K LG + + I + F+V F V++
Sbjct: 1406 ILPVRSLTRAGFTTKDLEPIDVVICGFDNQGKPTLGAITIKIQMSTFSFKVRFFVIEANT 1465
Query: 980 SYSCLLGRPWIHEAGAVTSTLHQKLKFVKNGKLVTVNGEEALLVSHLSSFS 1030
SYS LLGRPWIH+ V STLHQ LKF+ NG + + S+ S ++
Sbjct: 1466 SYSALLGRPWIHKYRVVPSTLHQCLKFLDG------NGVQQRITSNFSPYT 1510
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 771 bits (1992), Expect = 0.0
Identities = 438/1117 (39%), Positives = 638/1117 (56%), Gaps = 57/1117 (5%)
Query: 1208 EVINLGTKEDKKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPL 1267
E++N+ + + + VGA + S++ ++I LLK FAWS +DM G+D I H L +
Sbjct: 759 EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 818
Query: 1268 KPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMC 1327
P PVKQK R+ P+ A + EEV+K + AG +I YP+WLAN V V KK+GK R+C
Sbjct: 819 DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 878
Query: 1328 VDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITP 1387
VDY DLNKA PKD +PLPHID LV++T+ + + SFMD FSGYNQI M +D+EKTSF+T
Sbjct: 879 VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 938
Query: 1388 WGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKM 1447
GT+CYKVM FGL NAGATYQR + + D I + +EVY+DDM+VKS+ EDHV++L K
Sbjct: 939 RGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKC 998
Query: 1448 FQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGF 1507
F L Y ++LNP KCTFGV SG+ LG++V+++GIE +P +++AI E+P+PR +EV+
Sbjct: 999 FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1058
Query: 1508 LGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEG 1567
GR+ ++RFIS T C P + LL++ W +D ++AF+ +K YL PPIL+ P G
Sbjct: 1059 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1118
Query: 1568 RPLIMYLTVLENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAK 1627
L +Y+ V ++++ VL ++D ++ I+Y SK E E+RY ++EK A+ +A+
Sbjct: 1119 ETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSAR 1176
Query: 1628 RLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSILAD 1687
+LR Y +HT +++ P++ P+ +GR+ +W + LSEYDI+ R + A+K +LAD
Sbjct: 1177 KLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLAD 1235
Query: 1688 HLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGI 1747
L PL+ EE W L DG+ + G+GI
Sbjct: 1236 FLIELPLQSAERAVSGNRGEE-----------------------WSLYVDGSSSARGSGI 1272
Query: 1748 GAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQI 1807
G L++P + + RLRF TNN+AEYE I G+ A ++I I + DS L+ Q+
Sbjct: 1273 GIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQL 1332
Query: 1808 KGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKVNHHNDV- 1866
G++E + + Y + + F +L IPR +N ADALA L+ + +D+
Sbjct: 1333 SGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALA----LTSDSDLR 1388
Query: 1867 PLISVKFLDRPAY--VFAAEVV-----------FDDKPWFHDIKVFLQTREYPPGASNKD 1913
+I V+ +D+P+ A E+V D W +I+ +L P D
Sbjct: 1389 RIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYLSDGTLP-----SD 1443
Query: 1914 KKTLRRL---SSNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTM 1970
K T RRL ++ + L + L K + +L C+ E + ++ E HEG+ G H G +
Sbjct: 1444 KWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRAL 1503
Query: 1971 AKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIG 2030
A K+ + G+YW TM SDC T KC +CQ +A IH P L +P+PF W +D++G
Sbjct: 1504 ALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVG 1563
Query: 2031 RIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNG 2090
+ AS RFILV DYFTKWVEA SYA + V F+ IICR+G+P IITDNG
Sbjct: 1564 PM--PASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDNG 1621
Query: 2091 TNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVVTYKD-WHEMLP 2149
+ + + C +KI + S+P PQ NG EA NK I ++K + K W + L
Sbjct: 1622 SQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELD 1681
Query: 2150 FALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLMEADLSEAEWVQNRYDQLN 2209
L YRT+ R++T TPF+ YGMEA+ P EV SLR M E + D+L+
Sbjct: 1682 GVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRLD 1740
Query: 2210 LIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPD-SRGKWAPNYE 2268
+EE R ALC Q YQ + +++KV R F GDLVL+K+F + + GK N+E
Sbjct: 1741 DLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANWE 1800
Query: 2269 GPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
G Y V + G L TM G +PR N+ +K+Y+
Sbjct: 1801 GSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1837
Score = 80.1 bits (196), Expect = 8e-13
Identities = 44/138 (31%), Positives = 72/138 (51%)
Query: 878 LSFSDEELPAEGRNHNRALHISVNCKTDALSNVLVDTGSSLNVLSKTTYTQLAYQGAPLR 937
+SF+D +L HN L + + ++ VL+DTGSS++++ K T + ++
Sbjct: 600 ISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIK 659
Query: 938 RSGVMVKAFDGSRKDVLGEVVLPITVGPQVFQVNFQVMDIQASYSCLLGRPWIHEAGAVT 997
+ FDG +G + LPI VG + V F V+ A Y+ +LG PWIH+ A+
Sbjct: 660 PVSKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIP 719
Query: 998 STLHQKLKFVKNGKLVTV 1015
ST HQ +KF + + T+
Sbjct: 720 STYHQCVKFPTHNGIFTL 737
Score = 53.1 bits (126), Expect = 1e-04
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 208 SVQVPHKFKIPDFEKYKGSSCPEEHLKMY---VRRMPAYAQD-DQILIYYFQESLTGPAS 263
S++ K K+ E Y G + P+E L + + R + D F E LTGPA
Sbjct: 212 SIRGAQKIKL---ESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAH 268
Query: 264 KWYTNLDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWR 320
W++ L I +F L +F++ Y+ ++ +DL +++QG KE+ + + R++
Sbjct: 269 NWFSRLKPNSIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFVDRFK 325
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 771 bits (1992), Expect = 0.0
Identities = 427/1060 (40%), Positives = 618/1060 (58%), Gaps = 41/1060 (3%)
Query: 1253 MPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLA 1312
M G+ I H L + PV+Q++RR PD I+ E+ K ++AGF+ +YP WLA
Sbjct: 1 MKGIHPSITSHRLNVVSTARPVRQRIRRFHPDRQRVIRNEIDKLLEAGFIREVSYPDWLA 60
Query: 1313 NIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQI 1372
N+V VPKK+GK R+CVDY +LN A PKD FPLP ID +VDST+ + SF+D FSGY+QI
Sbjct: 61 NVVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFLDAFSGYHQI 120
Query: 1373 KMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIV 1432
M+P+D EK +FITP +CYKVMPFGL NAGATYQR MT +F +I +EVY+DD++V
Sbjct: 121 PMSPDDEEKIAFITPHDLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHSVEVYIDDIVV 180
Query: 1433 KSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAI 1492
KS T E H+ +LQ++F LR+Y ++LNP+KC FGV + K LGF+VSQ+GIEV PD+VKA+
Sbjct: 181 KSKTREQHILHLQEVFYLLRRYGMKLNPSKCAFGVSARKFLGFMVSQRGIEVSPDQVKAV 240
Query: 1493 REMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIK 1552
E P PR +KE++ G+L + RFI+ P F +RK WT++CQ A + IK
Sbjct: 241 METPPPRNKKELQRLTGKLVALGRFIARFIDELRPFFLAIRKAGTHGWTDNCQNALERIK 300
Query: 1553 KYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRY 1612
YL++PPIL P+ L MYL V E ++ VL + + +++ IYY+S+ + E+RY
Sbjct: 301 HYLMQPPILSSPIPKEKLYMYLAVSEWAISAVL-FRCPSPKEQKPIYYVSRALADVETRY 359
Query: 1613 SMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDI 1672
S +E AL AA++LR Y H +V P++ I KP LTGR+ +W + LSE+ I
Sbjct: 360 SKMELISLALRSAAQKLRPYFQAHPV-IVLTDQPLRNILHKPDLTGRMLQWAIELSEFGI 418
Query: 1673 ECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVW 1732
E + + ++KG ++AD + LE R +P EG W
Sbjct: 419 EFQPRLSMKGQVMADFV----LEYSR--------------------KPGQHEGSRKKEWW 454
Query: 1733 GLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIK 1792
L DGA G+G+G +L +P G H+ RL F +NN AEYEA + G++ A+ L +
Sbjct: 455 TLRVDGASRSSGSGVGLLLQSPTGEHLEQAIRLGFSASNNEAEYEAILSGLDLALALSVS 514
Query: 1793 NIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALA 1852
+ I+ DS LV+ ++ ++E A + Y R L F + + I R +N+ ADALA
Sbjct: 515 KLRIFSDSQLVVKHVQEEYEAKDARMARYLAKVRNTLQQFTEWTIEKIKRADNRRADALA 574
Query: 1853 TLSSMIKVNHHNDVPL-----ISVKFLDRPAYVFAAEVVFDDKPWFHDIKVFLQTREYPP 1907
+++ + + +P+ SV + + A + DD+ W +DI +++T P
Sbjct: 575 GIAASLSIKEAILLPIHVQTNPSVSEISICSTTEAPQA--DDQEWMNDITEYIRTGTLP- 631
Query: 1908 GASNKDKKTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNG 1967
K +R ++ F L G LYKR+F LRC+ EA ++ E+HEG +G H G
Sbjct: 632 -GDPKQAHKVRVQAARFTLIGGHLYKRSFTGPYLRCLGHSEAQYVLAELHEGIYGNHSGG 690
Query: 1968 HTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGID 2027
++A + GYYW TM+ + + ++C KCQ YA HMP TTL +S PWPF+ WG+D
Sbjct: 691 RSLAHRAHSQGYYWPTMKKEAAAYVKRCDKCQRYAPIPHMPSTTLKSISGPWPFAQWGMD 750
Query: 2028 MIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIIT 2087
++ R P A +F+LVA DYF+KWVEA +YA+ + V KF+ +IICR+GIP II
Sbjct: 751 IV-RPLPTAPAQKKFLLVATDYFSKWVEAEAYASTKDKDVTKFVWKNIICRFGIPQTIIA 809
Query: 2088 DNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVVTYK-DWHE 2146
DNG ++ + C + I + S+P PQ NG EA NK + ++K + K W E
Sbjct: 810 DNGPQFDSIAFRNFCSELNIRNSYSTPRYPQSNGQAEATNKTLITALKKRLEQAKGKWVE 869
Query: 2147 MLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLMEADLSEAEWVQNRYD 2206
LP L YRT+ TG TPF+L YGM+AV+P+E+ +P++ A S+A R
Sbjct: 870 ELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPIEIGLPTIWT-NAAKQSDANMQLGR-- 926
Query: 2207 QLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPD-SRGKWAP 2265
L+ +E R +A YQ+R +++KVRPR K G LVL+K F + GK+
Sbjct: 927 NLDWTDEVRESASIRMADYQQRASAHYNRKVRPRSLKNGTLVLRKFFENTTEVGAGKFQA 986
Query: 2266 NYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
N+EGPY+V +A GA LQ +DG L RP N +K+Y+
Sbjct: 987 NWEGPYIVSKASDNGAYHLQKLDGTPLLRPWNVSNLKQYY 1026
>gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530550|ref|NP_919577.1| putative
retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18581535|gb|AAK52540.2| Putative
retroelement pol polyprotein [Oryza sativa]
Length = 1580
Score = 770 bits (1989), Expect = 0.0
Identities = 428/1108 (38%), Positives = 642/1108 (57%), Gaps = 58/1108 (5%)
Query: 1205 DELEVINLGTKEDKKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHH 1264
D+ + L + +D +EI + ++ + +IELLKE+ D F W Y +MPG IV H
Sbjct: 517 DDKQGQGLMSADDLEEIDISPAIGQG-RHLLIELLKEFRDCFTWEYYEMPGHSRSIVEHR 575
Query: 1265 LPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKV 1324
LPLKP P +Q RR + DM +K E+++ DAGF+ Y +W+++IVPV KK+GKV
Sbjct: 576 LPLKPGVRPHQQLPRRCKADMLEPVKAEIKRLYDAGFIRPCRYAEWVSSIVPVIKKNGKV 635
Query: 1325 RMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSF 1384
R+C+D+R LNKA+PKD++P+ D LVD+ + K+ SFMDG +GYNQI MA ED KT+F
Sbjct: 636 RVCIDFRYLNKATPKDEYPMLVADQLVDAASGHKILSFMDGNAGYNQIFMAEEDIHKTTF 695
Query: 1385 ITPW--GTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVK 1442
P G F + V+ F L +AGATYQR M ++HD+I +EVY+DD++VKS EDH+
Sbjct: 696 RCPGAIGLFEWVVITFVLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIA 755
Query: 1443 YLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEK 1502
L+K+F+R RKY L++NP KC FGV +G+ LGF+V ++GIEV + AI+++ P +
Sbjct: 756 DLRKVFERTRKYGLKMNPTKCAFGVSAGQFLGFLVHERGIEVTQRSINAIKKIKPPEDKT 815
Query: 1503 EVRGFLGRLNYISRFISHMTATCGPIFKLLR--KEQGIVWTEDCQKAFDSIKKYLLEPPI 1560
E++ +G++N++ RFIS ++ P LLR +Q W + QKA D+IK+YL PP+
Sbjct: 816 ELQEMIGKINFVRRFISILSGKLEPFTPLLRLKADQQFAWGAEQQKALDNIKEYLSSPPV 875
Query: 1561 LIPPVEGRPLIMYLTVLENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCC 1620
LIPP +G P +YL+ + S+ VL Q+ E RKE ++YLS++ E+RYS +EK C
Sbjct: 876 LIPPQKGIPFRLYLSAGDKSISSVLIQELE--RKERVVFYLSRRLLNAETRYSPVEKLCL 933
Query: 1621 ALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAI 1680
L ++ RLRHY++++ ++ K D +KY+ P L GRI +W L+E+D+ S KAI
Sbjct: 934 CLYFSCTRLRHYLLSNECTVICKADVVKYMLSAPILKGRIGKWIFSLTEFDLRYESPKAI 993
Query: 1681 KGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIFDGAV 1740
KG +A+ + D+ D+ I +++ W L FDG+V
Sbjct: 994 KGQAIANFIV------------DYRDDSIGSVEVVP---------------WTLFFDGSV 1026
Query: 1741 NVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDS 1800
+G GIG V+++P+GA F ++ TNN AEYEA + G++ ++ IEI GDS
Sbjct: 1027 CTHGCGIGLVIISPRGACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADTIEIMGDS 1086
Query: 1801 ALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKV 1860
LVI+Q+ G++E + LI Y + + L+ F V L H+ R++N A+ LA +S
Sbjct: 1087 LLVISQLAGEYECKNDTLIVYNEKCQELMREFRLVTLKHVSREQNIEANDLAQGAS---- 1142
Query: 1861 NHHNDVPLISVKFLDRPAYVFAAEVVFDDKPWFHDIKVFLQTREYPPGASNKDKKTLRRL 1920
K + + + A + DD W + + +LQ S + LR
Sbjct: 1143 ---------GYKLMIKHVQIEVAVITADD--WRYYVYQYLQD------PSQSASRKLRYK 1185
Query: 1921 SSNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYY 1980
+ + L D LY R D VLL+C+ +A + I E+HEG G H + H M + AGY+
Sbjct: 1186 ALKYILLDDELYYRTIDGVLLKCLSTDQAKVAIGEVHEGICGTHQSAHKMKWLLRCAGYF 1245
Query: 1981 WMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGH 2040
W TM DC+++ + C CQ + P + +N + PWPF WGIDMIG I P +S GH
Sbjct: 1246 WPTMLEDCFRYYKGCQDCQKFGAIQRAPASAMNPIIKPWPFRGWGIDMIGMINPPSSKGH 1305
Query: 2041 RFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKE 2100
+FILVA DYFTKWVEA V ++F++ HII R GIP I TD G+ + +
Sbjct: 1306 KFILVATDYFTKWVEAIPLKKVDSGDAIQFVQEHIIYRVGIPQTITTDQGSIFVSDEFIQ 1365
Query: 2101 LCDDFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVVTY-KDWHEMLPFALHGYRTSV 2159
D I+ NSSPY Q NG EA+NK++ +++++ + Y + WH L AL YR +
Sbjct: 1366 FADSMGIKLLNSSPYYAQANGQAEASNKSLIKLIKRKISDYPRQWHTRLAEALWSYRMAC 1425
Query: 2160 RTSTGATPFSLVYGMEAVLPVEVEIPSLRVLMEADLSEAEWVQNRYDQLNLIEEKRMTAL 2219
S P+ LVY +A+LP EV I S R ++ DL+ E+ D+ + + R+ AL
Sbjct: 1426 HGSIQVPPYKLVYRHKAILPWEVRIGSRRTELQNDLTADEYSNLMADEREDLVQSRLRAL 1485
Query: 2220 CHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSF-QPDSR-GKWAPNYEGPYVVKRAF 2277
++R+ + ++KKV P++F EG+L+ K I DS+ GKW+PN+EGP+ + +
Sbjct: 1486 AKVIKDKERVTRHYNKKVVPKDFSEGELIWKLILPIGTRDSKFGKWSPNWEGPFQIHKVV 1545
Query: 2278 SGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
S GA LQ +DGE R +N +KKY+
Sbjct: 1546 SKGAYMLQGLDGEVYDRALNGKYLKKYY 1573
Score = 77.4 bits (189), Expect = 5e-12
Identities = 48/171 (28%), Positives = 93/171 (54%), Gaps = 4/171 (2%)
Query: 892 HNRALHISVNCKTDALSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKAFDGSRK 951
H + L+I+ +S ++VD G+++N++ T+ +L L ++ +++K F G+
Sbjct: 360 HLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPS 419
Query: 952 DVLGEVVLPITVGPQVFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLKFVKNGK 1011
+ +G + + +TVG + F V+D + SYS LLGR WIH + ST+HQ L + K
Sbjct: 420 ETMGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTIHQCLIQWQGDK 479
Query: 1012 LVTVNGEEALLVSHLSSFSFIGADNVEGT-PFQGFTIEDKNTKRNEASISS 1061
+ V + L + + S+ F G +EG+ + T++D + K+ + +S+
Sbjct: 480 IEIVPADSQLKMEN-PSYCFEGV--MEGSNVYTKDTVDDLDDKQGQGLMSA 527
Score = 37.7 bits (86), Expect = 4.7
Identities = 30/94 (31%), Positives = 39/94 (40%), Gaps = 15/94 (15%)
Query: 532 LLKKNLVQTRTAPPIPEKLPSWYRLDQT--CDFHEGGRGHNIETCYAFKSTVQKLINDGK 589
LL++ +Q P +PS L + C +H G H C FK +Q I GK
Sbjct: 148 LLREKQIQM----PASHTIPSAEELGKKRYCKWHNSG-SHTTNDCKVFKQQIQTAIEGGK 202
Query: 590 ITFTDS--APNVQTNPLPNHGAATVNMIEDCQKT 621
I F DS V NP P VNM+ +T
Sbjct: 203 IKFDDSKRPMKVDGNPFP------VNMVHTAGRT 230
>ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultivar-group)]
gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1986
Score = 701 bits (1810), Expect = 0.0
Identities = 400/1104 (36%), Positives = 611/1104 (55%), Gaps = 58/1104 (5%)
Query: 1218 KKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQK 1277
++EI++ A+ E+++ I L+ D+FAW DMPG+ +++ H L +K + P+KQ+
Sbjct: 924 REEIRLAATTESAL----ITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 979
Query: 1278 LRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKAS 1337
LRR D IKEE+ K + AGF+ +P WLAN V V KK G+ RMCVDY DLNK+
Sbjct: 980 LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1039
Query: 1338 PKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMP 1397
PKD F LP ID +VDSTA ++ SF+D +SGY+QI++ D KTSFITP+G +CY MP
Sbjct: 1040 PKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1099
Query: 1398 FGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLR 1457
FGL NAGATYQR + F I + +E YVDD++VK+ ++D + L++ F +R ++++
Sbjct: 1100 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMK 1159
Query: 1458 LNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRF 1517
LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K+V+ G + +SRF
Sbjct: 1160 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1219
Query: 1518 ISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVL 1577
+S + P FKLL+K W + QKAF+ K+ L +PP+L P PL++Y++
Sbjct: 1220 VSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSAT 1279
Query: 1578 ENSMGCVL-GQQDETG---RKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYM 1633
+ VL +++E G + + IY++S+ + ++RY ++K + ++L HY
Sbjct: 1280 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYF 1339
Query: 1634 INHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLAHQP 1693
H+ +V+ P+ + GRIA+W + L DI + + +IK LAD +A
Sbjct: 1340 QGHSVTVVTSF-PLGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALADFVA--- 1395
Query: 1694 LEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLT 1753
++ + D P E+I + W + FDG+ + G G G VL++
Sbjct: 1396 --EWTECQEDTPVEKIEH--------------------WTMHFDGSKRLSGTGAGVVLIS 1433
Query: 1754 PKGAHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWET 1813
P G + + + F ++N+AEYEA + G+ AI L IK + + GDS LV+NQ+ +W
Sbjct: 1434 PTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC 1493
Query: 1814 LHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKVN------HHNDVP 1867
+ ++ YR R+L F+ +EL H+ R N+ AD LA S + H P
Sbjct: 1494 IDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREAAPSDVFVEHLYTP 1553
Query: 1868 LISVKFLDRPAYVFAAEVVFDDKPWFHDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFL 1926
+ K D +VV + W FL ++E P +KD+ + + R S + +
Sbjct: 1554 TVPHK--DTTQDADTHDVVMVEADWREPFIRFLSSQELP---QDKDEAERISRRSKLYVM 1608
Query: 1927 NGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMES 1986
+ LYK++ +L RCV E L+ +IH G G H T+ K R G++W T S
Sbjct: 1609 HESELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVS 1668
Query: 1987 DCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVA 2046
D K R C CQ +A +IH+P L + WPF++WG+DM+G + KA G+ + VA
Sbjct: 1669 DADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVA 1727
Query: 2047 IDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFK 2106
ID F+KW+EA +T F N I+ R+G+PNRIITDNGT + K+ C+DF
Sbjct: 1728 IDKFSKWIEAKPVVTITADNARDFFIN-IVHRFGVPNRIITDNGTQFTGGVFKDFCEDFG 1786
Query: 2107 IEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVVTYKDWHEMLPFALHGYRTSVRT 2161
I+ +S P NG VE AN I R+ ++ W + LP L RT+
Sbjct: 1787 IKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSR 1846
Query: 2162 STGATPFSLVYGMEAVLPVEVEIPSLRVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCH 2221
+TG +PF LVYG EA+LP EVE SLR + E + ++R D L+ +EE R AL
Sbjct: 1847 ATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIQ 1903
Query: 2222 GQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGA 2281
Y + +++ ++ VR R F GDLVL+KI + + R K +P +EGP+++ G+
Sbjct: 1904 SARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR--DRHKLSPLWEGPFIISEVTRPGS 1961
Query: 2282 MTLQTMDGEELPRPVNTDAVKKYF 2305
L+ DG + N + +++++
Sbjct: 1962 YRLKREDGTLVDNSWNIEHLRRFY 1985
Score = 60.5 bits (145), Expect = 7e-07
Identities = 54/241 (22%), Positives = 96/241 (39%), Gaps = 16/241 (6%)
Query: 209 VQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTN 268
V P FK EKY G++ PE L +Y + A D++ + Y +L A W
Sbjct: 428 VDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLHG 487
Query: 269 LDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSP 328
L + I ++ +L + F+ + + + DL + Q E+ +EY +R+ + ++S
Sbjct: 488 LPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLREYIRRFSEQRNKISD 547
Query: 329 RIEEKEMTKLFLKTLNHFYYKKMVGS-------TPKSFAEMVGMGVQLEEGVREGR---- 377
I + + F K + H +++VG T K E + E+ V +
Sbjct: 548 -ISDDVIIAAFTKGIRH---EELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASKQSGP 603
Query: 378 -LVKNTTPVSGTKKTGNHFPRKKEQEVGMVTHGGPQQTYPAYQHIAAITPTSHPFQQTNN 436
TP +G + NH RK++ E + T + I + P +N
Sbjct: 604 SWKPKNTPATGGGGSNNHKDRKRKPEELVATAAHSSRQRSRVNTFDKIMNSQCPHHPNSN 663
Query: 437 H 437
H
Sbjct: 664 H 664
Score = 45.8 bits (107), Expect = 0.017
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 784 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 843
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LGRP + + AV + +K
Sbjct: 844 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 887
>gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531824|ref|NP_920214.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128685|gb|AAM92798.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1986
Score = 699 bits (1804), Expect = 0.0
Identities = 399/1104 (36%), Positives = 609/1104 (55%), Gaps = 58/1104 (5%)
Query: 1218 KKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQK 1277
++EI++ A+ E+++ I L+ D+FAW DMPG+ +++ H L +K + P+KQ+
Sbjct: 924 REEIRLAATTESAL----ITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 979
Query: 1278 LRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKAS 1337
LRR D IKEE+ K + AGF+ +P WLAN V V KK G+ RMCVDY DLNK+
Sbjct: 980 LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1039
Query: 1338 PKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMP 1397
PKD F LP ID +VDSTA ++ SF+D +SGY+QI++ D KTSFITP+G +CY MP
Sbjct: 1040 PKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1099
Query: 1398 FGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLR 1457
FGL NAGATYQR + F I + +E YVDD++VK+ ++D + L++ F +R ++++
Sbjct: 1100 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMK 1159
Query: 1458 LNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRF 1517
LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K+V+ G + +SRF
Sbjct: 1160 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1219
Query: 1518 ISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVL 1577
+S + P FKLL+K W + QKAF+ K+ L +PP+L P PL++Y++
Sbjct: 1220 VSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSAT 1279
Query: 1578 ENSMGCVL-GQQDETG---RKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYM 1633
+ VL +++E G + + IY++S+ + ++RY ++K + ++L HY
Sbjct: 1280 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKARYPQVQKLLYGILITTRKLSHYF 1339
Query: 1634 INHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLAHQP 1693
H+ +V+ P+ + GRIA+W + L DI + + +IK LAD +A
Sbjct: 1340 QGHSVTVVTSF-PLGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALADFVA--- 1395
Query: 1694 LEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLT 1753
++ + D P E+I + W + FDG+ + G G G VL++
Sbjct: 1396 --EWTECQEDTPVEKIEH--------------------WTMHFDGSKRLSGTGAGVVLIS 1433
Query: 1754 PKGAHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWET 1813
P G + + + F ++N+AEYEA + G+ AI L IK + + GDS LV+NQ+ +W
Sbjct: 1434 PTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC 1493
Query: 1814 LHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKVN------HHNDVP 1867
+ ++ YR R+L F+ +EL H+ R N+ AD LA S + H P
Sbjct: 1494 IDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKRETAPSDVFVEHLYTP 1553
Query: 1868 LISVKFLDRPAYVFAAEVVFDDKPWFHDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFL 1926
+ K D + + W FL ++E P +KD+ + + R S + L
Sbjct: 1554 TVPHK--DTTQDADTRNIAMVEADWREPFIRFLTSQELP---QDKDEAERISRRSKLYVL 1608
Query: 1927 NGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMES 1986
+ LYK++ +L RCV E L+ +IH G G H T+ K R G++W T S
Sbjct: 1609 HESELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVS 1668
Query: 1987 DCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVA 2046
D K R C CQ +A +IH+P L + WPF++WG+DM+G + KA G+ + VA
Sbjct: 1669 DADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVA 1727
Query: 2047 IDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFK 2106
ID F+KW+EA +T F N I+ R+G+PNRIITDNGT + K+ C+DF
Sbjct: 1728 IDKFSKWIEAKPVVTITADNARDFFIN-IVHRFGVPNRIITDNGTQFTGGVFKDFCEDFG 1786
Query: 2107 IEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVVTYKDWHEMLPFALHGYRTSVRT 2161
I+ +S P NG VE AN I R+ ++ W + LP L RT+
Sbjct: 1787 IKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSR 1846
Query: 2162 STGATPFSLVYGMEAVLPVEVEIPSLRVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCH 2221
+TG +PF LVYG EA+LP EVE SLR + E + ++R D L+ +EE R AL
Sbjct: 1847 ATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQ 1903
Query: 2222 GQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGA 2281
Y + +++ ++ VR R F GDLVL+KI + + R K +P +EGP+++ G+
Sbjct: 1904 SARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR--DRHKLSPLWEGPFIISEVTRPGS 1961
Query: 2282 MTLQTMDGEELPRPVNTDAVKKYF 2305
L+ DG + N + +++++
Sbjct: 1962 YRLKREDGTLVDNSWNIEHLRRFY 1985
Score = 58.9 bits (141), Expect = 2e-06
Identities = 53/241 (21%), Positives = 96/241 (38%), Gaps = 16/241 (6%)
Query: 209 VQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTN 268
V P FK EKY G++ PE L +Y + A D++ + Y +L A W
Sbjct: 428 VDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLHG 487
Query: 269 LDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSP 328
L + I ++ +L + F+ + + + DL + Q E+ ++Y +R+ + ++S
Sbjct: 488 LPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISD 547
Query: 329 RIEEKEMTKLFLKTLNHFYYKKMVGS-------TPKSFAEMVGMGVQLEEGVREGR---- 377
I + + F K + H +++VG T K E + E+ V +
Sbjct: 548 -ITDDVIIAAFTKGIRH---EELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASKQSGP 603
Query: 378 -LVKNTTPVSGTKKTGNHFPRKKEQEVGMVTHGGPQQTYPAYQHIAAITPTSHPFQQTNN 436
TP +G + NH RK++ E + T + I + P +N
Sbjct: 604 SWKPKNTPATGGGGSNNHKDRKRKPEELVATAAHSSRQRSRVNTFDKIMNSQCPHHPNSN 663
Query: 437 H 437
H
Sbjct: 664 H 664
Score = 44.3 bits (103), Expect = 0.050
Identities = 28/104 (26%), Positives = 48/104 (45%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 784 LRRTLIDGGSALNILFAKTLDDMQIPRSELKSSNAPFHGVIPGLSATPLGQITLPVTFGT 843
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LG P + + AV + +K
Sbjct: 844 RENFRTENISFEVADFETAYHAILGHPALAKFMAVPHYTYMMMK 887
>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 697 bits (1800), Expect = 0.0
Identities = 397/1078 (36%), Positives = 597/1078 (54%), Gaps = 54/1078 (5%)
Query: 1244 DVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLI 1303
D+FAW DMPG+ +++ H L +K + P+KQ+LRR D IKEE+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 1304 TSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFM 1363
++P WLAN V V KK G+ RMCVDY DLNK+ PKD F LP ID +VDSTA ++ SF+
Sbjct: 1037 EVHHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 1364 DGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEI 1423
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + +
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 1424 EVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1483
E YVDD++VK+ ++D + L++ F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 1484 VDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTED 1543
+P+KV AI M P T+K+V+ G + +SRF+S + P FKLL+K W +
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1276
Query: 1544 CQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVL-GQQDETG---RKEHAIY 1599
QKAF+ KK L EPP+L P PL++Y++ + VL +++E G + + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1336
Query: 1600 YLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGR 1659
++S+ + ++RY ++K + ++L HY H+ +V+ P+ I GR
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1395
Query: 1660 IARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDE 1719
IA+W + L DI + + +IK LAD +A ++ + D P E++ +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442
Query: 1720 PLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEAC 1779
W + FDG+ + G G G VL++P G + + + F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1780 IMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHH 1839
+ G+ AI L IK + + GDS LV+NQ+ +W L ++ YR R+L F+ +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 1840 IPRDENQMADALATLSSMIKVN------HHNDVPLISVKFLDRPAYVFAAEVVFDDKPWF 1893
+ R N+ AD LA S +V H P + K D +V + W
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAPSDVFVEHLYTPTVPHK--DTTQVAGTHDVAMVEADWR 1608
Query: 1894 HDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLL 1952
+ FL ++E P +KD+ + + R S + ++ LYK++ +L RCV E L
Sbjct: 1609 EPLIRFLTSQELP---QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQL 1665
Query: 1953 IHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTL 2012
+ +IH G G H T+ K R G++W T SD K R C CQ +A +IH+P L
Sbjct: 1666 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1725
Query: 2013 NLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIK 2072
+ WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1726 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAPDFFI 1784
Query: 2073 NHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI-- 2130
N I+ R+G+PNRIITDNG + K+ C+DF I+ +S P NG VE AN I
Sbjct: 1785 N-IVHRFGVPNRIITDNGRQFTGGVFKDCCEDFGIKICYASVAHPMSNGQVERANGMILQ 1843
Query: 2131 ---KRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSL 2187
R+ ++ W E LP L RT+ +TG +PF LVYG EA+LP EVE SL
Sbjct: 1844 GIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1903
Query: 2188 RVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2247
R + E + ++R D L+ +EE R AL Y + +++ ++ VR R F GDL
Sbjct: 1904 RF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDL 1960
Query: 2248 VLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
VL+KI + + R K +P +EGP+++ G+ L+ DG + N + +++++
Sbjct: 1961 VLRKIQTTR--DRHKLSPLWEGPFIISAVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2016
Score = 59.7 bits (143), Expect = 1e-06
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 19/221 (8%)
Query: 209 VQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTN 268
V P FK EKY G++ PE L +Y + A D + + Y +L A W
Sbjct: 432 VDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALADSARSWLHG 491
Query: 269 LDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSP 328
L + I ++ +L + F+ + + + DL + Q E+ ++Y +R+ + ++S
Sbjct: 492 LPRGTIGSWAELRDHFIANFQGTFERPGTQFDLYNVVQKSGESLRDYIRRFSEQRNKISD 551
Query: 329 RIEEKEMTKLFLKTLNHFYYKKMVGS-------TPKSFAEMVGMGVQLEEGVREGR---- 377
I + + F K + H +++VG T K E + E+ V +
Sbjct: 552 -ITDDVIIAAFTKGIRH---EELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASKQSGP 607
Query: 378 --LVKNTTPVSGTKKTGNHFPRKKEQE--VGMVTHGGPQQT 414
K TP +G + NH RK++ E V H Q++
Sbjct: 608 SWKPKKDTPATGGGGSNNHKDRKRKPEELVATAIHSSRQRS 648
Score = 45.8 bits (107), Expect = 0.017
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LGRP + + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa
(japonica cultivar-group)]
Length = 2013
Score = 697 bits (1798), Expect = 0.0
Identities = 399/1078 (37%), Positives = 598/1078 (55%), Gaps = 54/1078 (5%)
Query: 1244 DVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLI 1303
D+FAW DMPG+ +++ H L +K + P+KQ+LRR D IKEE+ K + AGF+
Sbjct: 973 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1032
Query: 1304 TSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFM 1363
+P WLAN V V KK G+ RMCVDY DLNK+ PKD F LP ID +VDSTA ++ SF+
Sbjct: 1033 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1092
Query: 1364 DGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEI 1423
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + +
Sbjct: 1093 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1152
Query: 1424 EVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1483
E YVDD++VK+ ++D + L++ F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1153 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1212
Query: 1484 VDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTED 1543
+P+KV AI M P T+K+V+ G + +SRF+S + P FKLL+K W +
Sbjct: 1213 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1272
Query: 1544 CQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVL-GQQDETG---RKEHAIY 1599
QKAF+ KK L EPP+L P PL++Y++ + VL +++E G + + IY
Sbjct: 1273 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1332
Query: 1600 YLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGR 1659
++S+ + ++RY ++K + ++L HY H+ +V+ P+ I + GR
Sbjct: 1333 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREVNGR 1391
Query: 1660 IARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDE 1719
IA+W + L DI + + +IK LAD +A ++ + D P E + +
Sbjct: 1392 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1438
Query: 1720 PLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEAC 1779
W + FDG+ + G G G VL++P G + + + F ++N+AEYEA
Sbjct: 1439 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1486
Query: 1780 IMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHH 1839
+ G+ AI L IK + + GDS LV+NQ+ +W L ++ YR R+L F+ +EL H
Sbjct: 1487 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSYLDDNMMAYRQEVRKLEDKFDGLELSH 1546
Query: 1840 IPRDENQMADALATLSSMIKVN------HHNDVPLISVKFLDRPAYVFAAEVVFDDKPWF 1893
+ R N+ AD LA S + H P + K + A A +V D W
Sbjct: 1547 VLRHNNEAADRLANFGSKREAAPSDVFVEHLYTPTVPHKDTTQVAGTHDAAMVEVD--WR 1604
Query: 1894 HDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLL 1952
+ FL ++E P +KD+ + + R S + L+ LYK++ +L RCV E L
Sbjct: 1605 EPLIRFLTSQELP---QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEEGRQL 1661
Query: 1953 IHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTL 2012
+ +IH G G H T+ K R G++W T SD K R C CQ +A +IH+P L
Sbjct: 1662 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1721
Query: 2013 NLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIK 2072
+ WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1722 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFFI 1780
Query: 2073 NHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI-- 2130
N I+ R+G+PNRIITDNGT + K+ C+DF I+ +S P NG VE AN I
Sbjct: 1781 N-IVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1839
Query: 2131 ---KRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSL 2187
R+ ++ W + LP L RT+ +TG +PF LVYG EA+LP EVE SL
Sbjct: 1840 GIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1899
Query: 2188 RVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2247
R + E + ++R D L+ +EE R AL Y + +++ ++ VR R F GDL
Sbjct: 1900 RF---RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDL 1956
Query: 2248 VLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
VL+KI + + R K +P +EGP+++ G+ L+ DG + N + +++++
Sbjct: 1957 VLRKIQTTR--DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2012
Score = 56.2 bits (134), Expect = 1e-05
Identities = 50/221 (22%), Positives = 93/221 (41%), Gaps = 19/221 (8%)
Query: 209 VQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTN 268
V P FK EKY G++ PE L +Y + A D++ + Y +L A W
Sbjct: 428 VDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLHG 487
Query: 269 LDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSP 328
L + I ++ +L + F+ + + + DL + Q E+ ++Y +R+ + ++S
Sbjct: 488 LPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISD 547
Query: 329 RIEEKEMTKLFLKTLNHFYYKKMVGS-------TPKSFAEMVGMGVQLEEGVREGR---- 377
I + + F K + H +++VG T K E + E+ V +
Sbjct: 548 -ITDDVIIAAFTKGIRH---EELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASKQSGP 603
Query: 378 --LVKNTTPVSGTKKTGNHFPRKKE--QEVGMVTHGGPQQT 414
TP +G + NH RK++ + V +H Q++
Sbjct: 604 SWKQNKGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRS 644
Score = 45.8 bits (107), Expect = 0.017
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 785 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 844
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LGRP + + AV + +K
Sbjct: 845 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 888
>ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultivar-group)]
gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza
sativa (japonica cultivar-group)]
Length = 2010
Score = 697 bits (1798), Expect = 0.0
Identities = 396/1078 (36%), Positives = 596/1078 (54%), Gaps = 54/1078 (5%)
Query: 1244 DVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLI 1303
D+FAW DMPG+ +++ H L +K + P+KQ+LRR D IKEE+ K + AGF+
Sbjct: 970 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1029
Query: 1304 TSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFM 1363
+P WLAN V V KK G+ RMCVDY DLNK+ PKD F LP ID +VDSTA ++ SF+
Sbjct: 1030 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGRELLSFL 1089
Query: 1364 DGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEI 1423
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + +
Sbjct: 1090 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1149
Query: 1424 EVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1483
E YVDD++VK+ ++D + L++ F +R ++++LNP KCTFGV SGKL+GF+VS +GI+
Sbjct: 1150 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLVGFMVSHRGIQ 1209
Query: 1484 VDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTED 1543
+P+KV AI M P T+K+V+ G + +SRF+S + P FKLL+K W +
Sbjct: 1210 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPE 1269
Query: 1544 CQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVL-GQQDETG---RKEHAIY 1599
QKAF+ KK L EPP+L P PL++Y++ + VL +++E G + + IY
Sbjct: 1270 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1329
Query: 1600 YLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGR 1659
++S+ + ++RY ++K + ++L HY H+ +V+ P+ I GR
Sbjct: 1330 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1388
Query: 1660 IARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDE 1719
IA+W + L DI + + +IK LAD +A ++ + D P E + +
Sbjct: 1389 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1435
Query: 1720 PLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEAC 1779
W + FDG+ + G G G VL++P G + + + F ++N+AEYEA
Sbjct: 1436 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1483
Query: 1780 IMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHH 1839
+ G+ AI L IK + + GDS LV+NQ+ +W L ++ YR R+L F+ +EL H
Sbjct: 1484 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1543
Query: 1840 IPRDENQMADALATLSSMIKVN------HHNDVPLISVKFLDRPAYVFAAEVVFDDKPWF 1893
+ R N+ AD LA S +V H P + K D +V + W
Sbjct: 1544 VLRHNNEAADRLANFGSKREVAPSDVFVEHLYTPTVPHK--DTTQVAGTHDVAMVETDWR 1601
Query: 1894 HDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLL 1952
+ FL ++E P +KD+ + + R S + ++ LYK++ +L RCV E L
Sbjct: 1602 EPLIRFLTSQELP---QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQL 1658
Query: 1953 IHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTL 2012
+ +IH G G H T+ K R G++W T SD K R C CQ +A +IH+P L
Sbjct: 1659 LQDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1718
Query: 2013 NLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIK 2072
+ WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1719 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFFI 1777
Query: 2073 NHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI-- 2130
N I+ R+G+PNRIITDNGT + K+ C+DF I+ +S P NG VE AN I
Sbjct: 1778 N-IVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1836
Query: 2131 ---KRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSL 2187
R+ ++ W + LP L RT+ +TG +PF LVYG EA+LP EVE SL
Sbjct: 1837 GIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1896
Query: 2188 RVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2247
R + E + ++R D L+ +EE R AL Y + +++ ++ VR R F GDL
Sbjct: 1897 RF---RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDL 1953
Query: 2248 VLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
VL+KI + + R K +P +EGP+++ G+ L+ DG + N + +++++
Sbjct: 1954 VLRKIQTTR--DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2009
Score = 56.2 bits (134), Expect = 1e-05
Identities = 50/221 (22%), Positives = 93/221 (41%), Gaps = 19/221 (8%)
Query: 209 VQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTN 268
V P FK EKY G++ PE L +Y + A D++ + Y +L A W
Sbjct: 425 VDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLHG 484
Query: 269 LDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSP 328
L + I ++ +L + F+ + + + DL + Q E+ ++Y +R+ + ++S
Sbjct: 485 LPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISD 544
Query: 329 RIEEKEMTKLFLKTLNHFYYKKMVGS-------TPKSFAEMVGMGVQLEEGVREGR---- 377
I + + F K + H +++VG T K E + E+ V +
Sbjct: 545 -ITDDVIIAAFTKGIRH---EELVGKFGRKPPMTVKLMFEKANEYAKAEDAVTASKQSGP 600
Query: 378 --LVKNTTPVSGTKKTGNHFPRKKE--QEVGMVTHGGPQQT 414
TP +G + NH RK++ + V +H Q++
Sbjct: 601 SWKQNKGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRS 641
Score = 45.8 bits (107), Expect = 0.017
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 782 LRRTLIDGGSALNILFAKTLDDMQIPHSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 841
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LGRP + + AV + +K
Sbjct: 842 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 885
>ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46391119|gb|AAS90646.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1991
Score = 696 bits (1796), Expect = 0.0
Identities = 395/1103 (35%), Positives = 607/1103 (54%), Gaps = 56/1103 (5%)
Query: 1218 KKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQK 1277
++EI++ A+ E+++ I L+ D+FAW DMPG+ +++ H L +K + P+KQ+
Sbjct: 929 REEIRLAATTESAL----ITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 984
Query: 1278 LRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKAS 1337
LRR D IKEE+ K + AGF+ +P WLAN V V KK G+ RMCVDY DLNK+
Sbjct: 985 LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1044
Query: 1338 PKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMP 1397
PKD F LP ID +VDSTA ++ SF+D +SGY+QI++ D KTSFITP+G +CY MP
Sbjct: 1045 PKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1104
Query: 1398 FGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLR 1457
FGL NAGATYQR + F I + +E YVDD++VK+ ++D + L++ F +R ++++
Sbjct: 1105 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLILDLEETFASIRAFRMK 1164
Query: 1458 LNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRF 1517
LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K+V+ G + +SRF
Sbjct: 1165 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1224
Query: 1518 ISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVL 1577
+S + P FKLL+K W + QKAF+ K+ L +PP+L P PL++Y++
Sbjct: 1225 VSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSAT 1284
Query: 1578 ENSMGCVL-GQQDETG---RKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYM 1633
+ VL +++E G + + IY++S+ + ++RY ++K + ++L HY
Sbjct: 1285 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYF 1344
Query: 1634 INHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLAHQP 1693
H+ +V+ P+ + GRIA+W + L DI + + +IK LAD +A
Sbjct: 1345 QGHSVTVVTSF-PLGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALADFVA--- 1400
Query: 1694 LEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLT 1753
++ + D P E+I + W + FDG+ + G G G VL++
Sbjct: 1401 --EWTECQEDTPVEKIEH--------------------WTMHFDGSKRLSGTGAGVVLIS 1438
Query: 1754 PKGAHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWET 1813
P G + + + F ++N+AEYEA + G+ AI L IK + + GDS LV+NQ+ +W
Sbjct: 1439 PTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC 1498
Query: 1814 LHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKVN------HHNDVP 1867
+ ++ YR R+L F+ +EL H+ R N+ AD LA S + H P
Sbjct: 1499 IDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREAAPSDVFVEHLYSP 1558
Query: 1868 LISVKFLDRPAYVFAAEVVFDDKPWFHDIKVFLQTREYPPGASNKDKKTLRRLSSNFFLN 1927
+ K D ++ + W + FL ++E P ++ + R S + ++
Sbjct: 1559 TVPHK--DATQVADTHDIAMVEADWREPLIRFLTSQELPQYKDEAER--ISRRSKLYVMH 1614
Query: 1928 GDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESD 1987
LYK++ +L RCV E L+ +IH G G H T+ K R G++W T SD
Sbjct: 1615 EAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSD 1674
Query: 1988 CYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAI 2047
K R C CQ +A +IH+P L + WPF++WG+DM+G + KA G+ + +AI
Sbjct: 1675 ADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFMAI 1733
Query: 2048 DYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKI 2107
D F+KW+EA +T F N I+ R+G+PNRIITDNGT + K+ C+DF I
Sbjct: 1734 DKFSKWIEAKPVVTITADNARDFFIN-IVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGI 1792
Query: 2108 EHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVVTYKDWHEMLPFALHGYRTSVRTS 2162
+ +S P NG VE AN I R+ ++ W LP L RT+ +
Sbjct: 1793 KICYASVAHPMSNGQVERANGMILQRIKARVFDRLKPYAGKWVSQLPSVLWSLRTTPSRA 1852
Query: 2163 TGATPFSLVYGMEAVLPVEVEIPSLRVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHG 2222
TG +PF LVYG EA+LP EVE SLR + E + ++R D L+ +EE R AL
Sbjct: 1853 TGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQS 1909
Query: 2223 QLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAM 2282
Y + +++ ++ VR R F GDLVL+KI + + R K +P +EGP+++ G+
Sbjct: 1910 ARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR--DRHKLSPLWEGPFIISEVTRPGSY 1967
Query: 2283 TLQTMDGEELPRPVNTDAVKKYF 2305
L+ DG + N + +++++
Sbjct: 1968 RLKREDGTLVDNSWNIEHIRRFY 1990
Score = 60.1 bits (144), Expect = 9e-07
Identities = 54/241 (22%), Positives = 96/241 (39%), Gaps = 16/241 (6%)
Query: 209 VQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTN 268
V P FK EKY G++ PE L +Y + A D++ + Y +L A W
Sbjct: 433 VDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLHG 492
Query: 269 LDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSP 328
L + I ++ +L + F+ + + + DL + Q E+ +EY +R+ + ++S
Sbjct: 493 LPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLREYIRRFSEQRNKISD 552
Query: 329 RIEEKEMTKLFLKTLNHFYYKKMVGS-------TPKSFAEMVGMGVQLEEGVREGR---- 377
I + + F K + H +++VG T K E + E+ V +
Sbjct: 553 -ITDDVIIAAFTKGIRH---EELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASKQSGP 608
Query: 378 -LVKNTTPVSGTKKTGNHFPRKKEQEVGMVTHGGPQQTYPAYQHIAAITPTSHPFQQTNN 436
TP +G + NH RK++ E + T + I + P +N
Sbjct: 609 SWKPKNTPATGGGGSNNHKDRKRKPEELVATAAHSSRQRSRVNTFDKIMNSQCPHHPNSN 668
Query: 437 H 437
H
Sbjct: 669 H 669
Score = 46.2 bits (108), Expect = 0.013
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKSSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LGRP + + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533012|ref|NP_920808.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881590|gb|AAM00991.1| Putative retroelement [Oryza
sativa]
Length = 2017
Score = 695 bits (1794), Expect = 0.0
Identities = 397/1078 (36%), Positives = 594/1078 (54%), Gaps = 54/1078 (5%)
Query: 1244 DVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLI 1303
D+FAW DMPG+ +++ H L +K + P+KQ+LRR D IKEE+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 1304 TSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFM 1363
+P WLAN V V KK G+ RMCVDY DLNK PKD F LP ID +VDSTA ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 1364 DGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEI 1423
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + +
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 1424 EVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1483
E YVDD++VK+ ++D + L++ F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 1484 VDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTED 1543
+P+KV AI M P T+K+V+ G + +SRF+S + P FKLL+K W +
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFHWGPE 1276
Query: 1544 CQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVL-GQQDETG---RKEHAIY 1599
QKAF+ KK L EPP+L P PL++Y++ + VL +++E G + + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEDGHVQKVQRPIY 1336
Query: 1600 YLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGR 1659
++S+ + ++RY ++K + ++L HY H +V+ P+ I GR
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHLVTVVTSF-PLGDILHNREANGR 1395
Query: 1660 IARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDE 1719
IA+W + L DI + + +IK LAD +A ++ + D P E++ +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKVEH-------- 1442
Query: 1720 PLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEAC 1779
W + FDG+ + G G G VL++P G + + + F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1780 IMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHH 1839
+ G+ AI L IK + + GDS LV+NQ+ +W L ++ YR R+L F+ +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 1840 IPRDENQMADALATLSSMIKVN------HHNDVPLISVKFLDRPAYVFAAEVVFDDKPWF 1893
+ R N+ AD LA S +V H P + K D +V + W
Sbjct: 1551 VLRHNNKAADRLANFGSKREVAPSDVFVEHLYAPTVPHK--DTTQVAGTHDVAMVEADWR 1608
Query: 1894 HDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLL 1952
+ FL ++E P +KD+ + + R S + ++ LYK++ +L RCV E L
Sbjct: 1609 EPLIRFLTSQELP---QDKDEAERISRRSRLYVMHEAELYKKSPSGILQRCVSLEEGRQL 1665
Query: 1953 IHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTL 2012
+ +IH G G H T+ K R G++W T SD K R C CQ +A +IH+P L
Sbjct: 1666 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1725
Query: 2013 NLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIK 2072
+ WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1726 QTIPLSWPFAVWGLDMVGPFK-KAFGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFFI 1784
Query: 2073 NHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI-- 2130
N I+ R+G+PNRIITDNG + K+ C+DF I+ +S P NG VE AN I
Sbjct: 1785 N-IVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1843
Query: 2131 ---KRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSL 2187
R+ ++ W E LP L RT+ +TG +PF LVYG EA+LP EVE SL
Sbjct: 1844 GIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1903
Query: 2188 RVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2247
R + E + ++R D L+ +EE R AL Y + +++ ++ VR R F GDL
Sbjct: 1904 RF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDL 1960
Query: 2248 VLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
VL+KI + + R K +P +EGP+++ G+ L+ DG + N + +++++
Sbjct: 1961 VLRKIQTTR--DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLIDNSWNIEHLRRFY 2016
Score = 60.8 bits (146), Expect = 5e-07
Identities = 52/221 (23%), Positives = 93/221 (41%), Gaps = 19/221 (8%)
Query: 209 VQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTN 268
V P FK EKY G++ PE L +Y + A D + + Y +L A W
Sbjct: 432 VDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALADSARSWLHG 491
Query: 269 LDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSP 328
L + I+++ +L + F+ + + + DL + Q E+ ++Y +R+ + ++S
Sbjct: 492 LPRGTIESWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISD 551
Query: 329 RIEEKEMTKLFLKTLNHFYYKKMVGS-------TPKSFAEMVGMGVQLEEGVREGR---- 377
I + + F K + H +++VG T K E + E+ V +
Sbjct: 552 -ITDDVIIAAFTKGIRH---EELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASKQSGP 607
Query: 378 --LVKNTTPVSGTKKTGNHFPRKKEQE--VGMVTHGGPQQT 414
TP +G + NH RK++ E V TH Q++
Sbjct: 608 SWKPNKGTPATGGGGSNNHKDRKRKPEELVATATHSSRQRS 648
Score = 45.8 bits (107), Expect = 0.017
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LGRP + + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1950
Score = 695 bits (1794), Expect = 0.0
Identities = 397/1078 (36%), Positives = 595/1078 (54%), Gaps = 54/1078 (5%)
Query: 1244 DVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLI 1303
D+FAW DMPG+ +++ H L +K + P+KQ+LRR D IKEE+ K + AGF+
Sbjct: 910 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 969
Query: 1304 TSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFM 1363
+P WLAN V V KK G+ RMCVDY DLNK+ PKD F LP ID +VDSTA ++ SF+
Sbjct: 970 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1029
Query: 1364 DGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEI 1423
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + +
Sbjct: 1030 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1089
Query: 1424 EVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1483
E YVDD++VK+ ++D + L++ F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1090 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1149
Query: 1484 VDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTED 1543
+P+KV AI M P T+K+V+ G + +SRF+S + P FKLL+K W +
Sbjct: 1150 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPE 1209
Query: 1544 CQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVL-GQQDETG---RKEHAIY 1599
QKAF+ KK L EPPIL P PL++Y++ + VL +++E G + + IY
Sbjct: 1210 AQKAFEDFKKLLTEPPILASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1269
Query: 1600 YLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGR 1659
++S+ + ++RY ++K + ++L HY H+ +V+ P+ I GR
Sbjct: 1270 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1328
Query: 1660 IARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDE 1719
IA+W + L DI + + +IK LAD +A ++ + D P E + +
Sbjct: 1329 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1375
Query: 1720 PLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEAC 1779
W + FDG+ + G G G VL++P G + + + F ++N+AEYEA
Sbjct: 1376 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1423
Query: 1780 IMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHH 1839
+ G+ AI L IK + + GDS LV+NQ+ +W L ++ YR R+L F+ +EL H
Sbjct: 1424 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1483
Query: 1840 IPRDENQMADALATLSSMIKVN------HHNDVPLISVKFLDRPAYVFAAEVVFDDKPWF 1893
+ R N+ AD LA S ++ H P + K D +V + W
Sbjct: 1484 VLRHNNEAADRLANFGSKREMAPSDVFVEHLYTPTVPHK--DTTQDADTHDVALVEADWR 1541
Query: 1894 HDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLL 1952
FL ++E P +KD+ + + R S + ++ LYK++ +L RCV E L
Sbjct: 1542 EPFIRFLTSQELP---QDKDEAERISRRSKLYAMHEAELYKKSPSGILQRCVSLEEGRQL 1598
Query: 1953 IHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTL 2012
+ +IH G G H T+ K R G++W T SD K R C CQ +A +IH+P L
Sbjct: 1599 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1658
Query: 2013 NLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIK 2072
+ WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1659 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFFI 1717
Query: 2073 NHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI-- 2130
N I+ R+G+PNRIITDNGT + K+ C+DF I+ +S P NG VE AN I
Sbjct: 1718 N-IVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1776
Query: 2131 ---KRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSL 2187
R+ ++ W + LP L RT+ +TG +PF LVYG EA+LP EVE SL
Sbjct: 1777 GIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1836
Query: 2188 RVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2247
R + E + ++R D L+ +EE R AL Y + +++ ++ VR R F GDL
Sbjct: 1837 RF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFLVGDL 1893
Query: 2248 VLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
VL+KI + + R K +P +EGP+++ G+ L+ DG + N + +++++
Sbjct: 1894 VLRKIQTTR--DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1949
Score = 56.2 bits (134), Expect = 1e-05
Identities = 50/221 (22%), Positives = 93/221 (41%), Gaps = 19/221 (8%)
Query: 209 VQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTN 268
V P FK EKY G++ PE L +Y + A D++ + Y +L A W
Sbjct: 365 VDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLHG 424
Query: 269 LDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSP 328
L + I ++ +L + F+ + + + DL + Q E+ ++Y +R+ + ++S
Sbjct: 425 LPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISD 484
Query: 329 RIEEKEMTKLFLKTLNHFYYKKMVGS-------TPKSFAEMVGMGVQLEEGVREGR---- 377
I + + F K + H +++VG T K E + E+ V +
Sbjct: 485 -ITDDVIIAAFTKGIRH---EELVGKFGRKPPRTVKLMFEKANEYTKAEDAVTASKQSGP 540
Query: 378 --LVKNTTPVSGTKKTGNHFPRKKE--QEVGMVTHGGPQQT 414
TP +G + NH RK++ + V +H Q++
Sbjct: 541 SWKQNKGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRS 581
Score = 45.8 bits (107), Expect = 0.017
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 722 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 781
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LGRP + + AV + +K
Sbjct: 782 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 825
>ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2012
Score = 695 bits (1794), Expect = 0.0
Identities = 397/1078 (36%), Positives = 596/1078 (54%), Gaps = 54/1078 (5%)
Query: 1244 DVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLI 1303
D+FAW DMPG+ +++ H L +K + P+KQ+LRR D IKEE+ K + AGF+
Sbjct: 972 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1031
Query: 1304 TSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFM 1363
+P WLAN V V KK G+ MCVDY DLNK+ PKD F LP ID +VDSTA ++ SF+
Sbjct: 1032 EVLHPDWLANPVLVRKKTGQWLMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1091
Query: 1364 DGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEI 1423
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + +
Sbjct: 1092 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1151
Query: 1424 EVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1483
E YVDD++VK+ ++D + L++ F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1152 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1211
Query: 1484 VDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTED 1543
+P+KV AI M +P T+K+V+ G + +SRF+S + P FKLL+K W +
Sbjct: 1212 ANPEKVTAILNMKSPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDSFRWGPE 1271
Query: 1544 CQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVL-GQQDETG---RKEHAIY 1599
QKAF+ KK L EPP+L P PL++Y++ + VL +++E G + + IY
Sbjct: 1272 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1331
Query: 1600 YLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGR 1659
++S+ + ++RY ++K + ++L HY H+ +V+ P+ I GR
Sbjct: 1332 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1390
Query: 1660 IARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDE 1719
IA+W + L DI + + +IK LAD +A ++ + D P E + +
Sbjct: 1391 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1437
Query: 1720 PLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEAC 1779
W + FDG+ + G G G VL++P G + + + F ++N+AEYEA
Sbjct: 1438 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1485
Query: 1780 IMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHH 1839
+ G+ AI L IK + + GDS LV+NQ+ +W L ++ YR R+L F+ +EL H
Sbjct: 1486 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1545
Query: 1840 IPRDENQMADALATLSSMIKVN------HHNDVPLISVKFLDRPAYVFAAEVVFDDKPWF 1893
+ R N+ AD LA S + H P + K D A +V + W
Sbjct: 1546 VLRHNNEAADRLANFGSKREAAPSDVFVEHLYSPTVPHK--DATQAAGAHDVAMVEADWR 1603
Query: 1894 HDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLL 1952
+ FL ++E P +KD+ + + R S + L+ LYK++ +L RCV E L
Sbjct: 1604 EPLIRFLTSQELP---QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEEGRQL 1660
Query: 1953 IHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTL 2012
+ +IH G G H T+ K R G++W T SD K R C CQ +A +IH+P L
Sbjct: 1661 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1720
Query: 2013 NLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIK 2072
+ WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1721 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFFI 1779
Query: 2073 NHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI-- 2130
N I+ R+G+PNRIITDNGT + K+ C+DF I+ +S P NG VE AN I
Sbjct: 1780 N-IVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1838
Query: 2131 ---KRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSL 2187
R+ ++ W + LP L RT+ +TG +PF LVYG EA+LP EVE SL
Sbjct: 1839 GIKARVFDRLKPYAGKWVQQLPSVLWSLRTTSSRATGQSPFFLVYGAEAMLPSEVEFESL 1898
Query: 2188 RVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2247
R + E + ++R D L+ +EE R AL Y + +++ ++ VR R F GDL
Sbjct: 1899 RF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFLVGDL 1955
Query: 2248 VLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
VL+KI + + R K +P +EGP+++ G+ L+ DG + N + +++++
Sbjct: 1956 VLRKIQTTR--DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2011
Score = 56.2 bits (134), Expect = 1e-05
Identities = 50/221 (22%), Positives = 93/221 (41%), Gaps = 19/221 (8%)
Query: 209 VQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTN 268
V P FK EKY G++ PE L +Y + A D++ + Y +L A W
Sbjct: 427 VDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLHG 486
Query: 269 LDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSP 328
L + I ++ +L + F+ + + + DL + Q E+ ++Y +R+ + ++S
Sbjct: 487 LPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISD 546
Query: 329 RIEEKEMTKLFLKTLNHFYYKKMVGS-------TPKSFAEMVGMGVQLEEGVREGR---- 377
I + + F K + H +++VG T K E + E+ V +
Sbjct: 547 -ITDDVIIAAFTKGIRH---EELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASKQSGP 602
Query: 378 --LVKNTTPVSGTKKTGNHFPRKKE--QEVGMVTHGGPQQT 414
TP +G + NH RK++ + V +H Q++
Sbjct: 603 SWKQNKGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRS 643
Score = 45.8 bits (107), Expect = 0.017
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 784 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 843
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LGRP + + AV + +K
Sbjct: 844 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 887
>gb|AAV25234.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1953
Score = 694 bits (1791), Expect = 0.0
Identities = 397/1099 (36%), Positives = 604/1099 (54%), Gaps = 79/1099 (7%)
Query: 1218 KKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQK 1277
++EI++ A+ E+++ I L+ D+FAW DMPG+ +++ H L +K + P+KQ+
Sbjct: 924 REEIRLAATTESAL----ITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 979
Query: 1278 LRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKAS 1337
LRR D IKEE+ K + AGF+ +P WLAN V V KK G+ RMCVDY DLNK+
Sbjct: 980 LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1039
Query: 1338 PKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMP 1397
PKD F LP ID +VDSTA ++ SF+D +SGY+QI++ D KTSFITP+G +CY MP
Sbjct: 1040 PKDPFGLPRIDQVVDSTASCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1099
Query: 1398 FGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLR 1457
FGL NAGATYQR + F I + +E YVDD++VK+ ++D + L++ F +R ++++
Sbjct: 1100 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMK 1159
Query: 1458 LNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRF 1517
LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K+V+ G + +SRF
Sbjct: 1160 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1219
Query: 1518 ISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVL 1577
+S + P FKLL+K W + Q+AF+ K+ L +PP+L P PL++Y++
Sbjct: 1220 VSRLGERGMPFFKLLKKTDNFQWGPEAQRAFEDFKQLLTKPPVLASPHPQEPLLLYVSAT 1279
Query: 1578 ENSMGCVL-GQQDETG---RKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYM 1633
+ VL +++E G + + IY++S+ + ++RY ++K + ++L HY
Sbjct: 1280 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYF 1339
Query: 1634 INHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLAHQP 1693
H+ +V+ P+ + GRIA+W + L DI + + +IK LAD +A
Sbjct: 1340 QGHSVTVVTSF-PLGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALADFVA--- 1395
Query: 1694 LEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLT 1753
++ + D P E+I + W + FDG+ + G G G VL++
Sbjct: 1396 --EWTECQEDTPVEKIEH--------------------WTMHFDGSKRLSGTGAGVVLIS 1433
Query: 1754 PKGAHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWET 1813
P G + + + F ++N+AEYEA + G+ AI L IK + + GDS LV+NQ+ +W
Sbjct: 1434 PTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC 1493
Query: 1814 LHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKVNHHNDVPLISVKF 1873
+ ++ YR R+L F+ +EL H+ R N+ AD LA S K
Sbjct: 1494 IDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGS---------------KR 1538
Query: 1874 LDRPAYVFAAEVVFDDKPWFHDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFLNGDILY 1932
P+ VF +F DK +KD+ + + R S + ++ LY
Sbjct: 1539 EAAPSDVFRRTPLFPDKL-----------------PQDKDEAERISRRSKLYVMHESELY 1581
Query: 1933 KRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHT 1992
KR+ +L RCV E L+ +IH G G H T+ K R G++W T SD K
Sbjct: 1582 KRSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIV 1641
Query: 1993 RKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTK 2052
R C CQ +A +IH+P L + WPF++WG+DM+G + KA G+ + VAID F+K
Sbjct: 1642 RTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSK 1700
Query: 2053 WVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNS 2112
W+EA +T F N I+ R+G+PNRIITDNGT + K+ C+DF I+ +
Sbjct: 1701 WIEAKPVVTITADNARDFFIN-IVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYA 1759
Query: 2113 SPYRPQMNGAVEAANKNI-----KRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATP 2167
S P NG VE AN I R+ ++ W + LP L RT+ +TG +P
Sbjct: 1760 SVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSP 1819
Query: 2168 FSLVYGMEAVLPVEVEIPSLRVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQK 2227
F LVYG EA+LP EVE SLR + E + ++R D L+ +EE R AL Y +
Sbjct: 1820 FFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQ 1876
Query: 2228 RMKQAFDKKVRPREFKEGDLVLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTM 2287
+++ ++ VR R F GDLVL+KI + + R K +P +EGP+++ G+ L+
Sbjct: 1877 GLRRYHNRNVRSRAFLVGDLVLRKIQTTR--DRHKLSPLWEGPFIISEVTRPGSYRLKRE 1934
Query: 2288 DGEELPRPVNTDAVKKYFV 2306
DG + N + +++++V
Sbjct: 1935 DGTLVDNSWNIEHLRRFYV 1953
Score = 58.5 bits (140), Expect = 3e-06
Identities = 53/241 (21%), Positives = 96/241 (38%), Gaps = 16/241 (6%)
Query: 209 VQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTN 268
V P FK EKY G++ PE L +Y + A D++ + Y +L A W
Sbjct: 428 VDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLHG 487
Query: 269 LDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSP 328
L + I ++ +L + F+ + + + DL + Q E+ ++Y +R+ + ++S
Sbjct: 488 LPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKPGESLRDYIRRFSEQRNKISD 547
Query: 329 RIEEKEMTKLFLKTLNHFYYKKMVGS-------TPKSFAEMVGMGVQLEEGVREGR---- 377
I + + F K + H +++VG T K E + E+ V +
Sbjct: 548 -ITDDVIIAAFTKGIRH---EELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASKQSGP 603
Query: 378 -LVKNTTPVSGTKKTGNHFPRKKEQEVGMVTHGGPQQTYPAYQHIAAITPTSHPFQQTNN 436
TP +G + NH RK++ E + T + I + P +N
Sbjct: 604 SWKPKNTPATGGGGSNNHKDRKRKPEELVATAAHSSRQRSRVNTFDKIMNSQCPHHPNSN 663
Query: 437 H 437
H
Sbjct: 664 H 664
Score = 45.8 bits (107), Expect = 0.017
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 784 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 843
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LGRP + + AV + +K
Sbjct: 844 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 887
>gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531820|ref|NP_920212.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128689|gb|AAM92802.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 693 bits (1788), Expect = 0.0
Identities = 397/1078 (36%), Positives = 597/1078 (54%), Gaps = 54/1078 (5%)
Query: 1244 DVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLI 1303
D+FAW DMPG+ +++ H L +K + P+KQ+LRR D IKEE+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 1304 TSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFM 1363
+P WLAN V V KK G+ RMCVDY DLNK+ PKD F LP ID +VDSTA ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 1364 DGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEI 1423
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + +
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 1424 EVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1483
E YVDD++VK+ ++D + L++ F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 1484 VDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTED 1543
+P+KV AI M P T+K+V+ G + +SRF+S + P FKLL+K W +
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1276
Query: 1544 CQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLG-QQDETG---RKEHAIY 1599
QKAF+ KK L EPP+L P PL++Y++ + VL +++E G + + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1336
Query: 1600 YLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGR 1659
++S+ + ++RY ++K + ++L HY H+ +V+ P+ I GR
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1395
Query: 1660 IARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDE 1719
IA+W + L D+ + + +IK LAD +A ++ E+ KM+
Sbjct: 1396 IAKWALELMSLDLSFKPRISIKSQALADFVA----------EWTECQEDTTVKKMEH--- 1442
Query: 1720 PLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEAC 1779
W + FDG+ + G G G VL++P G + + + F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1780 IMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHH 1839
+ G+ AI L IK + + GDS LV+NQ+ +W L + YR R+L F+ +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMKAYRQEVRKLEDKFDGLELSH 1550
Query: 1840 IPRDENQMADALATLSSMIKVN------HHNDVPLISVKFLDRPAYVFAAEVVFDDKPWF 1893
+ R +N+ AD LA S +V H P + K + A + +V D W
Sbjct: 1551 VLRHDNEAADRLANFGSKREVAPSDVFVEHLYTPTVPHKDTTQAAGIHDVAMVETD--WR 1608
Query: 1894 HDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLL 1952
+ FL ++E P +KD+ + + R S + ++ LYK++ +L RCV E L
Sbjct: 1609 EPLIRFLTSQELP---QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQL 1665
Query: 1953 IHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTL 2012
+ +IH G G H T+ K R G++W T SD K R C CQ +A +IH+P L
Sbjct: 1666 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1725
Query: 2013 NLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIK 2072
+ WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1726 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFFI 1784
Query: 2073 NHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI-- 2130
N I+ R+G+PNRIITDNGT + K+ C+DF I+ +S P NG VE AN I
Sbjct: 1785 N-IVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1843
Query: 2131 ---KRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSL 2187
R+ ++ W + LP L RT+ +TG +PF LVYG EA+LP EVE SL
Sbjct: 1844 GIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1903
Query: 2188 RVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2247
R + E + ++R D L+ +EE R AL Y + +++ ++ VR R F GDL
Sbjct: 1904 RF---RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDL 1960
Query: 2248 VLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
VL+KI + + R K +P +EGP+++ G+ L+ DG + N + +++++
Sbjct: 1961 VLRKIQTTR--DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEYLRRFY 2016
Score = 56.2 bits (134), Expect = 1e-05
Identities = 50/221 (22%), Positives = 93/221 (41%), Gaps = 19/221 (8%)
Query: 209 VQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTN 268
V P FK EKY G++ PE L +Y + A D++ + Y +L A W
Sbjct: 432 VDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLHG 491
Query: 269 LDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSP 328
L + I ++ +L + F+ + + + DL + Q E+ ++Y +R+ + ++S
Sbjct: 492 LPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISD 551
Query: 329 RIEEKEMTKLFLKTLNHFYYKKMVGS-------TPKSFAEMVGMGVQLEEGVREGR---- 377
I + + F K + H +++VG T K E + E+ V +
Sbjct: 552 -ITDDVIIAAFTKGIRH---EELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASKQSGP 607
Query: 378 --LVKNTTPVSGTKKTGNHFPRKKE--QEVGMVTHGGPQQT 414
TP +G + NH RK++ + V +H Q++
Sbjct: 608 SWKQNKGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRS 648
Score = 45.8 bits (107), Expect = 0.017
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LGRP + + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1756
Score = 692 bits (1787), Expect = 0.0
Identities = 395/1078 (36%), Positives = 594/1078 (54%), Gaps = 54/1078 (5%)
Query: 1244 DVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLI 1303
D+FAW DMPG+ +++ H L +K + P+KQ+LRR D IKEE+ K + AGF+
Sbjct: 716 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFVQDRKDAIKEELTKLLAAGFIK 775
Query: 1304 TSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFM 1363
+P WLAN V V KK G+ RMCVDY DLNK PKD F LP ID +VDSTA ++ SF+
Sbjct: 776 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFL 835
Query: 1364 DGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEI 1423
D +SGY+QI++ D KTSFITP G +CY MPFGL NAGATYQR + F I + +
Sbjct: 836 DCYSGYHQIRLKESDCLKTSFITPIGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 895
Query: 1424 EVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1483
E YVDD+++K+ ++D + L++ F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 896 EAYVDDVVIKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 955
Query: 1484 VDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTED 1543
+P+KV AI M P T+K+V+ G + +SRF+S + P FKLL+K W +
Sbjct: 956 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1015
Query: 1544 CQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVL-GQQDETG---RKEHAIY 1599
QKAF+ KK+L EPP+L P PL++Y++ + VL +++E G + + IY
Sbjct: 1016 AQKAFEDFKKFLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1075
Query: 1600 YLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGR 1659
++S+ + ++RY ++K + ++L HY H+ +V+ P+ I GR
Sbjct: 1076 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1134
Query: 1660 IARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDE 1719
IA+W + L DI + + +IK LAD +A ++ + D P E++ +
Sbjct: 1135 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1181
Query: 1720 PLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEAC 1779
W + FDG+ + G G G VL++P G + + + F ++N+AEYEA
Sbjct: 1182 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1229
Query: 1780 IMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHH 1839
+ G+ AI L IK + + GDS LV+NQ+ +W L ++ YR R+L F+ +EL H
Sbjct: 1230 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1289
Query: 1840 IPRDENQMADALATLSSMIKVN------HHNDVPLISVKFLDRPAYVFAAEVVFDDKPWF 1893
+ R N+ AD LA S +V H P + K D +V + W
Sbjct: 1290 VLRHNNEAADRLANFGSKREVAPSDVFVEHLYTPTVPHK--DTTQIAGTHDVALVEADWR 1347
Query: 1894 HDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLL 1952
FL ++E P +KD+ + + R S + ++ LYK++ +L RCV E L
Sbjct: 1348 EPFIRFLTSQELP---QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQL 1404
Query: 1953 IHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTL 2012
+ +IH G G H T+ K R G++W T SD K R C CQ +A +IH+P L
Sbjct: 1405 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1464
Query: 2013 NLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIK 2072
+ WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1465 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFFI 1523
Query: 2073 NHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI-- 2130
N I+ R+G+PNRIITDNG + K+ C+DF I+ +S P NG VE AN I
Sbjct: 1524 N-IVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1582
Query: 2131 ---KRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSL 2187
R+ ++ W + LP L RT+ +TG +PF LVYG EA+LP EVE SL
Sbjct: 1583 GIKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1642
Query: 2188 RVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2247
R + E + ++R D L+ +EE R AL Y + +++ ++ VR R F GDL
Sbjct: 1643 RF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDL 1699
Query: 2248 VLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
VL+KI + + R K +P +EGP+++ G+ L+ DG + N + +++++
Sbjct: 1700 VLRKIQTTR--DRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1755
Score = 58.9 bits (141), Expect = 2e-06
Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 19/215 (8%)
Query: 215 FKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTNLDKTRI 274
FK EKY G++ PE L +Y + A D + + Y +L A W L + I
Sbjct: 177 FKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALADSARSWLHGLPRGTI 236
Query: 275 QTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSPRIEEKE 334
+++ +L + F+ + + + DL + Q E+ ++Y +R+ + ++S I +
Sbjct: 237 RSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISD-ITDDV 295
Query: 335 MTKLFLKTLNHFYYKKMVGS-------TPKSFAEMVGMGVQLEEGVREGR------LVKN 381
+ F K + H +++VG T K E + E+ V +
Sbjct: 296 IIAAFTKGIRH---EELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASKQSGPSWKPNK 352
Query: 382 TTPVSGTKKTGNHFPRKKEQE--VGMVTHGGPQQT 414
TP +G + NH RK++ E V TH Q++
Sbjct: 353 GTPATGGGGSNNHKDRKRKPEELVATATHSSRQRS 387
Score = 45.8 bits (107), Expect = 0.017
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 528 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 587
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LGRP + + AV + +K
Sbjct: 588 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 631
>ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultivar-group)]
gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa
(japonica cultivar-group)]
Length = 2008
Score = 687 bits (1773), Expect = 0.0
Identities = 405/1111 (36%), Positives = 607/1111 (54%), Gaps = 70/1111 (6%)
Query: 1213 GTKEDK-KEIKVGASLET-SVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPE 1270
G E K K+I + S T + + +I L+ D+FAW DMPG+ +++ H L +K +
Sbjct: 949 GESEAKTKKIPLDPSDPTKTAESALITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKED 1008
Query: 1271 CPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDY 1330
P+KQ+LRR D IKEE+ K + AGF+ +P WLAN V V KK G+ RMCVDY
Sbjct: 1009 AKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDY 1068
Query: 1331 RDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGT 1390
DLNK+ PKD F LP ID +VDSTA ++ SF+D +SGY+QI++ D KTSFITP+G
Sbjct: 1069 TDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGA 1128
Query: 1391 FCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQR 1450
+CY MPFGL NAGATYQR + F I + +E YVDD++VK+ ++D + L++ F
Sbjct: 1129 YCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFVS 1188
Query: 1451 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGR 1510
+R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K+V+ G
Sbjct: 1189 IRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGC 1248
Query: 1511 LNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPL 1570
+ +SRF+S + P FKLL+K W + QKAF+ KK L EPP+L P PL
Sbjct: 1249 MAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPL 1308
Query: 1571 IMYLTVLENSMGCVLG-QQDETG---RKEHAIYYLSKKFTECESRYSMLEKTCCALAWAA 1626
++Y++ + VL +++E G + + IY++S+ + ++RY ++K
Sbjct: 1309 LLYVSATSQVVSTVLAVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQK--------- 1359
Query: 1627 KRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSILA 1686
+ H+ +V+ P+ I GRIA+W + L DI + + +IK LA
Sbjct: 1360 -----LLYGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALA 1413
Query: 1687 DHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNG 1746
D +A ++ + D P E + + W + FDG+ + G G
Sbjct: 1414 DFVA-----EWTECQEDTPAENMEH--------------------WTMHFDGSKRLSGTG 1448
Query: 1747 IGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQ 1806
G VL++P G + + + F ++N+AEYEA + G+ AI L IK + + GDS LV+NQ
Sbjct: 1449 AGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQ 1508
Query: 1807 IKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKVN----- 1861
+ +W L ++ YR R+L F+ +EL H+ R N+ AD LA S +V
Sbjct: 1509 VMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAPSDVF 1568
Query: 1862 -HHNDVPLISVKFLDRPAYVFAAEVVFDDKPWFHDIKVFLQTREYPPGASNKDK-KTLRR 1919
H P + K + A VV D W + FL ++E P +KD+ + + R
Sbjct: 1569 VEHLYTPTVPHKDTTQVAGTHDVAVVETD--WREPLIRFLTSQELP---QDKDEAERISR 1623
Query: 1920 LSSNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGY 1979
S + ++ LYK++ +L RCV E L+ +IH G G H T+ K R G+
Sbjct: 1624 RSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGF 1683
Query: 1980 YWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNG 2039
+W T SD K R C CQ +A +IH+P L + WPF++WG+DM+G + KA G
Sbjct: 1684 FWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGG 1742
Query: 2040 HRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMK 2099
+ + VAID F+KW+EA +T F N I+ R+G+PNRIITDNGT + K
Sbjct: 1743 YTHLFVAIDKFSKWIEAKPVVTITADNARDFFIN-IVHRFGVPNRIITDNGTQFTGGVFK 1801
Query: 2100 ELCDDFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVVTYKDWHEMLPFALHG 2154
+ C+DF I+ +S P NG VE AN I R+ ++ W + LP L
Sbjct: 1802 DFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWS 1861
Query: 2155 YRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLMEADLSEAEWVQNRYDQLNLIEEK 2214
RT+ +TG +PF LVYG EA+LP EVE SLR + E + ++R D L+ +EE
Sbjct: 1862 LRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEA 1918
Query: 2215 RMTALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPDSRGKWAPNYEGPYVVK 2274
R AL Y + +++ ++ VR R F GDLVL+KI + + R K +P +EGP+++
Sbjct: 1919 REAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR--DRHKLSPLWEGPFIIS 1976
Query: 2275 RAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
G+ L+ DG + N + +++++
Sbjct: 1977 EVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2007
Score = 45.8 bits (107), Expect = 0.017
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 785 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 844
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LGRP + + AV + +K
Sbjct: 845 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 888
>gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37536646|ref|NP_922625.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
gi|13876521|gb|AAK43497.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
Length = 2017
Score = 687 bits (1772), Expect = 0.0
Identities = 393/1078 (36%), Positives = 593/1078 (54%), Gaps = 54/1078 (5%)
Query: 1244 DVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLI 1303
D+FAW DMPG+ +++ H L +K + P+KQ+LRR D IKEE+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLYVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 1304 TSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFM 1363
+P WLAN V V KK G+ RMCVDY DLN + PKD F LP ID +VDSTA ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNISCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 1364 DGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEI 1423
D + GY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + +
Sbjct: 1097 DCYLGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 1424 EVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1483
E YVDD++VK+ ++D + L++ F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 1484 VDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTED 1543
+P+K+ AI M P T+K+V+ G + +SRF+S + P FKLL+K W D
Sbjct: 1217 ANPEKITAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPD 1276
Query: 1544 CQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVL-GQQDETG---RKEHAIY 1599
QKAF+ KK L EPP+L P PL++Y+ + VL +++E G + + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYIAAASQVVSTVLVVEREEEGHVQKVQRPIY 1336
Query: 1600 YLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGR 1659
++S+ + ++RY ++K + ++L HY +H+ +V+ + I GR
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQSHSVTVVTSFS-LGDILHNREANGR 1395
Query: 1660 IARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDE 1719
IA+W + L DI + + +IK LAD +A ++ + D P E++ +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442
Query: 1720 PLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEAC 1779
W + FDG+ + G G G VL++P G + + + F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1780 IMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHH 1839
+ G+ AI L IK + + GDS LV+NQ+ +W L ++ YR R+L F+ +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 1840 IPRDENQMADALATLSSMIKVN------HHNDVPLISVKFLDRPAYVFAAEVVFDDKPWF 1893
+ R N+ AD LA S +V H P + K D +V + W
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAPSDVFVEHLYTPTVPHK--DTTQIAGTHDVALVEADWR 1608
Query: 1894 HDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLL 1952
+ FL ++E P +KD+ + + R S + ++ LYK++ +L RCV E L
Sbjct: 1609 EPLIRFLTSQELP---QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQL 1665
Query: 1953 IHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTL 2012
+ +IH G G H T+ K R G++W T SD K R C CQ +A +IH+P L
Sbjct: 1666 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1725
Query: 2013 NLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIK 2072
+ WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1726 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFFI 1784
Query: 2073 NHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI-- 2130
N I+ R+G+PNRIITDNG + K+ C+DF I+ +S P NG VE AN I
Sbjct: 1785 N-IVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1843
Query: 2131 ---KRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSL 2187
R+ ++ W + LP L RT+ +TG +PF LVYG EA+LP EVE SL
Sbjct: 1844 GIKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1903
Query: 2188 RVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2247
R + E + ++R D L+ +EE R AL Y + +++ ++ VR R F GDL
Sbjct: 1904 RF---RNYREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDL 1960
Query: 2248 VLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
VL+KI + + R K +P +EGP+++ G+ L+ DG + N + +++++
Sbjct: 1961 VLRKIQTTR--DRHKLSPLWEGPFIISDVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2016
Score = 58.2 bits (139), Expect = 3e-06
Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 19/221 (8%)
Query: 209 VQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTN 268
V P FK EKY G++ PE L +Y + A D + + Y +L A W
Sbjct: 432 VDWPAGFKPTGIEKYDGTTNPESWLTIYGLAIRAAGGDSKAMANYLPVALADSARSWLHG 491
Query: 269 LDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSP 328
L + I ++ +L + F+ + + + DL + Q E+ ++Y +R+ + ++S
Sbjct: 492 LPRGTIGSWAELRDHFIANFQGTFEHPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISD 551
Query: 329 RIEEKEMTKLFLKTLNHFYYKKMVG-------STPKSFAEMVGMGVQLEEGVREGR---- 377
I + + F K + H +++VG T K E + E+ V +
Sbjct: 552 -ITDDVIIAAFTKGIRH---EELVGKFGRKPPKTVKLMFEKANEYAKAEDAVTASKQSGP 607
Query: 378 --LVKNTTPVSGTKKTGNHFPRKKEQE--VGMVTHGGPQQT 414
TP G + NH RK++ E V TH Q +
Sbjct: 608 SWKPNKGTPAKGGGGSNNHKDRKRKPEELVATATHSSRQHS 648
Score = 45.1 bits (105), Expect = 0.029
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 907 LSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKA-FDGSRKDVLGEVVLPITVGP 965
L L+D GS+LN+L T + + L+ S G LG++ LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 966 Q----VFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLK 1005
+ ++F+V D + +Y +LGRP + + AV + +K
Sbjct: 849 RENFRTENISFEVDDFETAYHAILGRPALAKFMAVPHYTYMMMK 892
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,125,756,404
Number of Sequences: 2540612
Number of extensions: 190183326
Number of successful extensions: 1075213
Number of sequences better than 10.0: 36562
Number of HSP's better than 10.0 without gapping: 7654
Number of HSP's successfully gapped in prelim test: 29253
Number of HSP's that attempted gapping in prelim test: 750427
Number of HSP's gapped (non-prelim): 117071
length of query: 2306
length of database: 863,360,394
effective HSP length: 144
effective length of query: 2162
effective length of database: 497,512,266
effective search space: 1075621519092
effective search space used: 1075621519092
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 84 (37.0 bits)
Medicago: description of AC148289.13