BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148240.10 - phase: 0 /pseudo
         (1012 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG59452.1| orf; Unknown function [Escherichia coli O157:H7 E...    42  0.080
dbj|BAB38653.1| hypothetical protein [Escherichia coli O157:H7] ...    39  0.88
emb|CAH78083.1| conserved hypothetical protein [Plasmodium chaba...    37  4.4
ref|NP_149265.1| Membrane protein [Clostridium acetobutylicum AT...    36  7.4

>gb|AAG59452.1| orf; Unknown function [Escherichia coli O157:H7 EDL933]
           gi|25501232|pir||H86123 hypothetical protein yjgL
           [imported] - Escherichia coli  (strain O157:H7,
           substrain EDL933) gi|15804845|ref|NP_290886.1|
           hypothetical protein Z5865 [Escherichia coli O157:H7
           EDL933]
          Length = 596

 Score = 42.4 bits (98), Expect = 0.080
 Identities = 22/46 (47%), Positives = 31/46 (66%)

Query: 436 QVQLILKMHQNLINLLILKSIQKLNLVQKLKSLQKLSLIQKQKLVQ 481
           ++  +L  HQ L NL  L ++QKLN +QKL +LQKL+ IQK   +Q
Sbjct: 181 EIARLLNNHQKLNNLQKLNNLQKLNNLQKLNNLQKLNNIQKLNNIQ 226


>dbj|BAB38653.1| hypothetical protein [Escherichia coli O157:H7]
           gi|25391903|pir||F91282 hypothetical protein ECs5230
           [imported] - Escherichia coli  (strain O157:H7,
           substrain RIMD 0509952) gi|15834484|ref|NP_313257.1|
           hypothetical protein ECs5230 [Escherichia coli O157:H7]
          Length = 590

 Score = 38.9 bits (89), Expect = 0.88
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 436 QVQLILKMHQNLINLLILKSIQKLNLVQKLKSLQKLSLIQK 476
           ++  +L  HQ L NL  L ++QKLN +QKL ++QKL+ IQ+
Sbjct: 181 EIARLLNNHQKLNNLQKLNNLQKLNNLQKLNNIQKLNNIQE 221


>emb|CAH78083.1| conserved hypothetical protein [Plasmodium chabaudi]
          Length = 768

 Score = 36.6 bits (83), Expect = 4.4
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 6/99 (6%)

Query: 437 VQLILKMHQNLINLLILKSIQKLNLVQKLKSLQKLSLIQKQK-LVQ*NRMKMLLRMFKIT 495
           +  +LK     INLL LK IQ + L+ K  SL+ +S+ +K + L++  + +  L+  K  
Sbjct: 381 INKVLKECNKEINLLYLKKIQAIKLI-KYISLKIVSITEKNRILIEIRKKERKLKKQKKI 439

Query: 496 LSRLFSQNSNTNLHILRS*SLEAKIVLEEQDHISDKKSL 534
             +  +Q  N N+        E KI+LE+ +  + KK +
Sbjct: 440 YGKQINQIENDNIACAE----EIKILLEQLESHNQKKQM 474


>ref|NP_149265.1| Membrane protein [Clostridium acetobutylicum ATCC 824]
            gi|14994417|gb|AAK76847.1| Membrane protein [Clostridium
            acetobutylicum ATCC 824]
          Length = 1058

 Score = 35.8 bits (81), Expect = 7.4
 Identities = 19/54 (35%), Positives = 26/54 (47%)

Query: 959  NISWKTIRLMLTVFPFFVIILLLSVCQRIQFYIQEPSILRSNTILSETMFKKGF 1012
            N +W+    + T +PFF +IL+L+VC    FY    S      I S     KGF
Sbjct: 359  NKAWEKAATISTKYPFFALILVLAVCGLSYFYTSSLSFNNLKEIASNYPSVKGF 412


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.359    0.160    0.523 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,236,172,943
Number of Sequences: 2540612
Number of extensions: 40707635
Number of successful extensions: 147131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 147119
Number of HSP's gapped (non-prelim): 8
length of query: 1012
length of database: 863,360,394
effective HSP length: 138
effective length of query: 874
effective length of database: 512,755,938
effective search space: 448148689812
effective search space used: 448148689812
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 80 (35.4 bits)