BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147964.4 + phase: 0 /pseudo
(276 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB62436.1| U1 snRNP 70K protein [Arabidopsis thaliana] gi|2... 433 e-120
gb|AAP51870.1| putative U1 small nuclear ribonucleoprotein [Oryz... 394 e-108
gb|AAT64946.1| U1 snRNP [Zea mays] gi|49343272|gb|AAT64945.1| U1... 392 e-108
gb|AAD12776.1| U1 snRNP 70K truncated protein [Arabidopsis thali... 279 5e-74
gb|AAA36573.1| ribonucleoprotein antigen 251 1e-65
emb|CAA28352.1| unnamed protein product [Homo sapiens] 250 3e-65
emb|CAA59278.1| 68 kDa (U1) ribonucleoprotein [Homo sapiens] gi|... 250 3e-65
ref|XP_341858.2| PREDICTED: similar to U1 small nuclear ribonucl... 250 3e-65
ref|NP_033250.3| U1 small nuclear ribonucleoprotein 70 kDa [Mus ... 250 3e-65
dbj|BAB29263.2| unnamed protein product [Mus musculus] gi|263747... 248 1e-64
gb|AAH81331.1| Snrp70-prov protein [Xenopus tropicalis] gi|62857... 246 5e-64
ref|NP_001003875.1| U1 small nuclear ribonucleoprotein polypepti... 240 4e-62
gb|AAH77089.1| Snrp70 protein [Danio rerio] 239 8e-62
emb|CAA30972.1| U1 70K [Xenopus laevis] gi|134091|sp|P09406|RU17... 238 1e-61
gb|AAH81025.1| Unknown (protein for IMAGE:6864404) [Xenopus laevis] 238 1e-61
gb|AAH97714.1| Unknown (protein for IMAGE:6871460) [Xenopus laevis] 238 1e-61
ref|XP_308988.2| ENSANGP00000020311 [Anopheles gambiae str. PEST... 227 3e-58
emb|CAA29961.1| unnamed protein product [Homo sapiens] 226 7e-58
ref|XP_565448.1| ENSANGP00000028567 [Anopheles gambiae str. PEST... 225 1e-57
gb|AAT64948.1| U1 snRNP [Zea mays] gi|49343280|gb|AAT64947.1| U1... 224 3e-57
>emb|CAB62436.1| U1 snRNP 70K protein [Arabidopsis thaliana]
gi|20334806|gb|AAM16264.1| AT3g50670/T3A5_50
[Arabidopsis thaliana] gi|14532500|gb|AAK63978.1|
AT3g50670/T3A5_50 [Arabidopsis thaliana]
gi|1354469|gb|AAD12775.1| U1 snRNP 70K protein
[Arabidopsis thaliana] gi|1255711|gb|AAD12773.1| small
nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|13633916|sp|Q42404|RU17_ARATH U1 small nuclear
ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70)
(U1-70K) gi|15229825|ref|NP_190636.1| U1 small nuclear
ribonucleoprotein 70 (U1-70k) [Arabidopsis thaliana]
Length = 427
Score = 433 bits (1113), Expect = e-120
Identities = 212/275 (77%), Positives = 238/275 (86%), Gaps = 4/275 (1%)
Query: 3 DPLLRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKR 62
DP LRN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLEYKPPPEKR
Sbjct: 6 DPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKR 65
Query: 63 KCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYD 122
KCPP TGMAQFVS FAEPG+PEY+PP P VE P+++R R+HKLRLEKG KAAE+L+KYD
Sbjct: 66 KCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYD 125
Query: 123 PHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIE 182
P+NDPN +GDPYKTLFV+RL+YE++ES+IKREFESYG IKRV LVTD +NKP+GYAFIE
Sbjct: 126 PNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 183 YLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRH 242
Y+HTRDMKAAYKQADG+KI+GRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGG E
Sbjct: 186 YMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGE---EI 242
Query: 243 SGREQQQSGPSRSEEP-RVREERHADRDREKSRER 276
G +Q Q S+SEEP R REER R++ K RER
Sbjct: 243 VGEQQPQGRTSQSEEPSRPREEREKSREKGKERER 277
>gb|AAP51870.1| putative U1 small nuclear ribonucleoprotein [Oryza sativa (japonica
cultivar-group)] gi|37530562|ref|NP_919583.1| putative
U1 small nuclear ribonucleoprotein [Oryza sativa
(japonica cultivar-group)] gi|14028993|gb|AAK52534.1|
Putative U1 small nuclear ribonucleoprotein [Oryza
sativa]
Length = 491
Score = 394 bits (1011), Expect = e-108
Identities = 197/292 (67%), Positives = 230/292 (78%), Gaps = 30/292 (10%)
Query: 13 VQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQ 72
+Q+RTK Q R NV QLKL+GQ HPTGLT NLLKLFEPRPPL++KPP EKRK P TGMAQ
Sbjct: 18 MQSRTKGQ-RVNVQQLKLMGQGHPTGLTPNLLKLFEPRPPLDFKPPVEKRKLPAYTGMAQ 76
Query: 73 FVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGD 132
FVS+FAEPG+PEY+PPVP ET AE++ R+ K +L++GAAK AEEL+KYDP +DPN +GD
Sbjct: 77 FVSQFAEPGDPEYAPPVPTCETKAEKKDRIRKSKLDQGAAKVAEELQKYDPQSDPNATGD 136
Query: 133 PYKTLFVARLSYETTESRIKREFESYGAIKR----------------------------V 164
PYKTLFVARL+YET+E R+KREFE+YG IKR V
Sbjct: 137 PYKTLFVARLNYETSEHRVKREFEAYGPIKRQTSLKNVGDGTTYLQAWGFYILGFIRLLV 196
Query: 165 RLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRL 224
RLVTD E+NKPRGYAFIEY+HTRDMK AYKQADGRK++ RRVLVDVERGRTVPNWRPRRL
Sbjct: 197 RLVTDKETNKPRGYAFIEYMHTRDMKNAYKQADGRKVDNRRVLVDVERGRTVPNWRPRRL 256
Query: 225 GGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDREKSRER 276
GGGLG++R+GG+ Q+ S R+QQ +G RSEEPR R+ER ADRDREKSRER
Sbjct: 257 GGGLGSSRIGGENAEQKLSTRDQQHAGRPRSEEPR-RDERRADRDREKSRER 307
>gb|AAT64946.1| U1 snRNP [Zea mays] gi|49343272|gb|AAT64945.1| U1 snRNP [Zea mays]
Length = 491
Score = 392 bits (1008), Expect = e-108
Identities = 191/255 (74%), Positives = 219/255 (84%), Gaps = 1/255 (0%)
Query: 22 RANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPG 81
R NV QLKL+GQ HPTGLT NLLKLFEPRPPLEYKPP EKRK P TGMAQFVS FAEP
Sbjct: 25 RPNVQQLKLMGQIHPTGLTPNLLKLFEPRPPLEYKPPLEKRKLPAYTGMAQFVSHFAEPE 84
Query: 82 EPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVAR 141
+PEY+PPVP ET AE++AR+ +LE+GAAK AEEL+KYDP +DPN +GDPYKTLFVAR
Sbjct: 85 DPEYAPPVPKCETRAEKKARIRNNKLEQGAAKVAEELQKYDPQSDPNATGDPYKTLFVAR 144
Query: 142 LSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKI 201
L+YET+E RIKREFE YG IKRVRLVT+ +++KPRGYAFIEY+HTRDMK AY ADGRK+
Sbjct: 145 LNYETSEQRIKREFEGYGPIKRVRLVTEKDTSKPRGYAFIEYVHTRDMKNAYPAADGRKV 204
Query: 202 EGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVR 261
+ RRVLVDVERGRTVPNWRPRRLGGGLG+TR+GG + +++ S REQQQ G RSEEPR R
Sbjct: 205 DNRRVLVDVERGRTVPNWRPRRLGGGLGSTRMGGTDTDKKDSTREQQQGGRPRSEEPR-R 263
Query: 262 EERHADRDREKSRER 276
++R ADRDREKSRER
Sbjct: 264 DDRRADRDREKSRER 278
>gb|AAD12776.1| U1 snRNP 70K truncated protein [Arabidopsis thaliana]
gi|1354468|gb|AAD12774.1| U1 snRNP 70K truncated protein
[Arabidopsis thaliana] gi|30693345|ref|NP_850676.1| U1
small nuclear ribonucleoprotein 70 (U1-70k) [Arabidopsis
thaliana]
Length = 204
Score = 279 bits (714), Expect = 5e-74
Identities = 131/162 (80%), Positives = 147/162 (89%)
Query: 3 DPLLRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKR 62
DP LRN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLEYKPPPEKR
Sbjct: 6 DPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKR 65
Query: 63 KCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYD 122
KCPP TGMAQFVS FAEPG+PEY+PP P VE P+++R R+HKLRLEKG KAAE+L+KYD
Sbjct: 66 KCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYD 125
Query: 123 PHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRV 164
P+NDPN +GDPYKTLFV+RL+YE++ES+IKREFESYG IKRV
Sbjct: 126 PNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRV 167
>gb|AAA36573.1| ribonucleoprotein antigen
Length = 428
Score = 251 bits (642), Expect = 1e-65
Identities = 130/244 (53%), Positives = 162/244 (66%), Gaps = 9/244 (3%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRS-EEPRVREERHADRDREK 272
RTV WRPRRLGGGLG TR GG +VN RHSGR+ R + R RE R R+R+K
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRDRDRERERRERSRERDK 241
Query: 273 SRER 276
RER
Sbjct: 242 ERER 245
>emb|CAA28352.1| unnamed protein product [Homo sapiens]
Length = 614
Score = 250 bits (639), Expect = 3e-65
Identities = 132/253 (52%), Positives = 166/253 (65%), Gaps = 18/253 (7%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 182 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 238
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 239 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 298
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 299 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 358
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGRE-----QQQSGPS-----RSEEPRVREE 263
RTV WRPRRLGGGLG TR GG +VN RHSGR+ ++ GPS + R RE
Sbjct: 359 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERER 418
Query: 264 RHADRDREKSRER 276
R R+R+K RER
Sbjct: 419 RERSRERDKERER 431
>emb|CAA59278.1| 68 kDa (U1) ribonucleoprotein [Homo sapiens]
gi|12654935|gb|AAH01315.1| U1 small nuclear
ribonucleoprotein 70 kDa [Homo sapiens]
gi|13635663|sp|P08621|RU17_HUMAN U1 small nuclear
ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70)
(U1-70K) gi|29568103|ref|NP_003080.2| U1 small nuclear
ribonucleoprotein 70 kDa isoform a [Homo sapiens]
gi|337444|gb|AAA36572.1| ribonucleoprotein antigen
gi|337447|gb|AAA03001.1| small ribonucleoprotein 70 kd
protein
Length = 437
Score = 250 bits (639), Expect = 3e-65
Identities = 132/253 (52%), Positives = 166/253 (65%), Gaps = 18/253 (7%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGRE-----QQQSGPS-----RSEEPRVREE 263
RTV WRPRRLGGGLG TR GG +VN RHSGR+ ++ GPS + R RE
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERER 241
Query: 264 RHADRDREKSRER 276
R R+R+K RER
Sbjct: 242 RERSRERDKERER 254
>ref|XP_341858.2| PREDICTED: similar to U1 small nuclear ribonucleoprotein 70 kDa (U1
snRNP 70 kDa) (snRNP70) (U1-70K) [Rattus norvegicus]
Length = 451
Score = 250 bits (639), Expect = 3e-65
Identities = 132/253 (52%), Positives = 166/253 (65%), Gaps = 18/253 (7%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGRE-----QQQSGPS-----RSEEPRVREE 263
RTV WRPRRLGGGLG TR GG +VN RHSGR+ ++ GPS + R RE
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERER 241
Query: 264 RHADRDREKSRER 276
R R+R+K RER
Sbjct: 242 RERSRERDKERER 254
>ref|NP_033250.3| U1 small nuclear ribonucleoprotein 70 kDa [Mus musculus]
Length = 448
Score = 250 bits (639), Expect = 3e-65
Identities = 132/253 (52%), Positives = 166/253 (65%), Gaps = 18/253 (7%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGRE-----QQQSGPS-----RSEEPRVREE 263
RTV WRPRRLGGGLG TR GG +VN RHSGR+ ++ GPS + R RE
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERER 241
Query: 264 RHADRDREKSRER 276
R R+R+K RER
Sbjct: 242 RERSRERDKERER 254
>dbj|BAB29263.2| unnamed protein product [Mus musculus] gi|26374708|dbj|BAB27701.2|
unnamed protein product [Mus musculus]
Length = 247
Score = 248 bits (634), Expect = 1e-64
Identities = 129/243 (53%), Positives = 160/243 (65%), Gaps = 11/243 (4%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDREKS 273
RTV WRPRRLGGGLG TR GG +VN RHSGR+ E P H DRDR++
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTS---RYDERPGPSPLPHRDRDRDRE 238
Query: 274 RER 276
RER
Sbjct: 239 RER 241
>gb|AAH81331.1| Snrp70-prov protein [Xenopus tropicalis]
gi|62857785|ref|NP_001017239.1| hypothetical protein
LOC549993 [Xenopus tropicalis]
gi|56118714|ref|NP_001008126.1| snrp70-prov protein
[Xenopus tropicalis]
Length = 471
Score = 246 bits (628), Expect = 5e-64
Identities = 128/244 (52%), Positives = 161/244 (65%), Gaps = 9/244 (3%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V + S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRS-EEPRVREERHADRDREK 272
RTV WRPRRLGGGLG TR GG +VN RHSGR+ R + R R+ R R+R+K
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRDRERERDRRERSRERDK 241
Query: 273 SRER 276
RER
Sbjct: 242 ERER 245
>ref|NP_001003875.1| U1 small nuclear ribonucleoprotein polypeptide A [Danio rerio]
gi|49619089|gb|AAT68129.1| U1 small ribonucleoprotein
70kd [Danio rerio]
Length = 495
Score = 240 bits (612), Expect = 4e-62
Identities = 126/247 (51%), Positives = 161/247 (65%), Gaps = 14/247 (5%)
Query: 39 LTANLLKLFEPRPPLEYKP-----PPEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ + P P EK P G+A F+ F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPFLPQLGKLPHEKHHNQPYCGIAPFIRHFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERLERKRREKMERRQVVVEGELKLWDPHNDANAQGDAFKTLFVARINYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V + ++ KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGR------EQQQSGPSRSEEPRVREERHAD 267
RTV WRPRRLGGGLG TR GG +VN +HSGR + + G R + R ER +
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIKHSGRDDTSRYDDRPIGSDRDRDRGERRERSRE 241
Query: 268 RDREKSR 274
RDR+K R
Sbjct: 242 RDRDKER 248
>gb|AAH77089.1| Snrp70 protein [Danio rerio]
Length = 306
Score = 239 bits (609), Expect = 8e-62
Identities = 125/247 (50%), Positives = 161/247 (64%), Gaps = 14/247 (5%)
Query: 39 LTANLLKLFEPRPPLEYKP-----PPEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ + P P EK P G+A F+ F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPFLPQLGKLPHEKHHNQPYCGIAPFIRHFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERLERKRREKMERRQVVVEGELKLWDPHNDANAQGDAFKTLFVARINYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V + ++ +PRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIYIVYNKKTGRPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGR------EQQQSGPSRSEEPRVREERHAD 267
RTV WRPRRLGGGLG TR GG +VN +HSGR + + G R + R ER +
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIKHSGRDDTSRYDDRPIGSDRDRDRGERRERSRE 241
Query: 268 RDREKSR 274
RDR+K R
Sbjct: 242 RDRDKER 248
>emb|CAA30972.1| U1 70K [Xenopus laevis] gi|134091|sp|P09406|RU17_XENLA U1 small
nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
(snRNP70) (U1-70K)
Length = 471
Score = 238 bits (607), Expect = 1e-61
Identities = 130/247 (52%), Positives = 161/247 (64%), Gaps = 13/247 (5%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESN---KPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDV 210
EFE YG IKR+ +V + S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDV
Sbjct: 122 EFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 181
Query: 211 ERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDR 270
ERGRTV WRPRRLGGGLG TR GG +VN RHSGR+ R E R R+ R R+R
Sbjct: 182 ERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRE-RERDRRERSRER 240
Query: 271 EKS-RER 276
EK RER
Sbjct: 241 EKEPRER 247
>gb|AAH81025.1| Unknown (protein for IMAGE:6864404) [Xenopus laevis]
Length = 267
Score = 238 bits (607), Expect = 1e-61
Identities = 130/247 (52%), Positives = 161/247 (64%), Gaps = 13/247 (5%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESN---KPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDV 210
EFE YG IKR+ +V + S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDV
Sbjct: 122 EFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 181
Query: 211 ERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDR 270
ERGRTV WRPRRLGGGLG TR GG +VN RHSGR+ R E R R+ R R+R
Sbjct: 182 ERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRE-RERDRRERSRER 240
Query: 271 EKS-RER 276
EK RER
Sbjct: 241 EKEPRER 247
>gb|AAH97714.1| Unknown (protein for IMAGE:6871460) [Xenopus laevis]
Length = 351
Score = 238 bits (607), Expect = 1e-61
Identities = 130/247 (52%), Positives = 161/247 (64%), Gaps = 13/247 (5%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESN---KPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDV 210
EFE YG IKR+ +V + S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDV
Sbjct: 122 EFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 181
Query: 211 ERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDR 270
ERGRTV WRPRRLGGGLG TR GG +VN RHSGR+ R E R R+ R R+R
Sbjct: 182 ERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRE-RERDRRERSRER 240
Query: 271 EKS-RER 276
EK RER
Sbjct: 241 EKEPRER 247
>ref|XP_308988.2| ENSANGP00000020311 [Anopheles gambiae str. PEST]
gi|55246077|gb|EAA04709.2| ENSANGP00000020311 [Anopheles
gambiae str. PEST]
Length = 434
Score = 227 bits (578), Expect = 3e-58
Identities = 120/240 (50%), Positives = 159/240 (66%), Gaps = 8/240 (3%)
Query: 39 LTANLLKLFEPRPPLEYKPPPEK----RKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVET 94
L +NLL LF PR P+ Y PPP+K +K G+ F+ F +P + +PP VET
Sbjct: 5 LPSNLLALFAPRDPIPYLPPPDKLPHEKKSQGYLGVGAFLDCFEDPKD---TPPPTRVET 61
Query: 95 PAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKRE 154
ER R + R E+ A K E+ +DP+ + DP+KTLFVAR++Y+T+ES+++RE
Sbjct: 62 REERVERRRRERAEQVAYKLEREIATWDPNQLLEATEDPFKTLFVARINYDTSESKLRRE 121
Query: 155 FESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGR 214
FE YG IK++ ++ D ++ KPRGYAFIEY H RDM AAYK ADG+KI+G+RVLVDVER R
Sbjct: 122 FEIYGNIKKIIMINDKDTGKPRGYAFIEYEHERDMHAAYKHADGKKIDGKRVLVDVERAR 181
Query: 215 TVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREER-HADRDREKS 273
TV W PRRLGGGLG TR GG +VN +HSGRE + R R RE+R +RDR ++
Sbjct: 182 TVKGWLPRRLGGGLGGTRRGGPDVNIKHSGREDNERERERYRLEREREDRDRRERDRPEN 241
>emb|CAA29961.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 226 bits (575), Expect = 7e-58
Identities = 114/205 (55%), Positives = 142/205 (68%), Gaps = 10/205 (4%)
Query: 82 EPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVAR 141
+P +PP ET ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR
Sbjct: 1 DPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVAR 60
Query: 142 LSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKI 201
++Y+TTES+++REFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI
Sbjct: 61 VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 120
Query: 202 EGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGRE-----QQQSGPS--- 253
+GRRVLVDVERGRTV WRPRRLGGGLG TR GG +VN RHSGR+ ++ GPS
Sbjct: 121 DGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLP 180
Query: 254 --RSEEPRVREERHADRDREKSRER 276
+ R RE R R+R+K RER
Sbjct: 181 HRDRDRDRERERRERSRERDKERER 205
>ref|XP_565448.1| ENSANGP00000028567 [Anopheles gambiae str. PEST]
gi|55246076|gb|EAL41962.1| ENSANGP00000028567 [Anopheles
gambiae str. PEST]
Length = 398
Score = 225 bits (573), Expect = 1e-57
Identities = 119/235 (50%), Positives = 156/235 (65%), Gaps = 8/235 (3%)
Query: 39 LTANLLKLFEPRPPLEYKPPPEK----RKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVET 94
L +NLL LF PR P+ Y PPP+K +K G+ F+ F +P + +PP VET
Sbjct: 5 LPSNLLALFAPRDPIPYLPPPDKLPHEKKSQGYLGVGAFLDCFEDPKD---TPPPTRVET 61
Query: 95 PAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKRE 154
ER R + R E+ A K E+ +DP+ + DP+KTLFVAR++Y+T+ES+++RE
Sbjct: 62 REERVERRRRERAEQVAYKLEREIATWDPNQLLEATEDPFKTLFVARINYDTSESKLRRE 121
Query: 155 FESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGR 214
FE YG IK++ ++ D ++ KPRGYAFIEY H RDM AAYK ADG+KI+G+RVLVDVER R
Sbjct: 122 FEIYGNIKKIIMINDKDTGKPRGYAFIEYEHERDMHAAYKHADGKKIDGKRVLVDVERAR 181
Query: 215 TVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREER-HADR 268
TV W PRRLGGGLG TR GG +VN +HSGRE + R R RE+R H +R
Sbjct: 182 TVKGWLPRRLGGGLGGTRRGGPDVNIKHSGREDNERERERYRLEREREDRDHLNR 236
>gb|AAT64948.1| U1 snRNP [Zea mays] gi|49343280|gb|AAT64947.1| U1 snRNP [Zea mays]
Length = 193
Score = 224 bits (570), Expect = 3e-57
Identities = 108/143 (75%), Positives = 121/143 (84%)
Query: 22 RANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPG 81
R NV QLKL+GQ HPTGLT NLLKLFEPRPPLEYKPP EKRK P TGMAQFVS FAEP
Sbjct: 25 RPNVQQLKLMGQIHPTGLTPNLLKLFEPRPPLEYKPPLEKRKLPAYTGMAQFVSHFAEPE 84
Query: 82 EPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVAR 141
+PEY+PPVP ET AE++AR+ +LE+GAAK AEEL+KYDP +DPN +GDPYKTLFVAR
Sbjct: 85 DPEYAPPVPKCETRAEKKARIRNNKLEQGAAKVAEELQKYDPQSDPNATGDPYKTLFVAR 144
Query: 142 LSYETTESRIKREFESYGAIKRV 164
L+YET+E RIKREFE YG IKRV
Sbjct: 145 LNYETSEQRIKREFEGYGPIKRV 167
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.313 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,065,141
Number of Sequences: 2540612
Number of extensions: 22514462
Number of successful extensions: 89932
Number of sequences better than 10.0: 4423
Number of HSP's better than 10.0 without gapping: 2929
Number of HSP's successfully gapped in prelim test: 1511
Number of HSP's that attempted gapping in prelim test: 81681
Number of HSP's gapped (non-prelim): 8267
length of query: 276
length of database: 863,360,394
effective HSP length: 126
effective length of query: 150
effective length of database: 543,243,282
effective search space: 81486492300
effective search space used: 81486492300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 74 (33.1 bits)
Medicago: description of AC147964.4