BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147714.8 + phase: 0 /pseudo
(2334 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 536 e-150
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 534 e-149
gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum] 531 e-148
pir||T09671 RPE15 protein - alfalfa (fragment) gi|840619|gb|AAB5... 260 4e-67
gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum... 219 9e-55
gb|AAT39964.1| putative gag polyprotein [Solanum demissum] 150 7e-34
ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica... 113 9e-23
emb|CAD41628.3| OSJNBa0091D06.8 [Oryza sativa (japonica cultivar... 111 3e-22
gb|AAU89777.1| gag-pol polyprotein-like [Solanum tuberosum] 104 4e-20
emb|CAC44143.1| putative gag polyprotein [Cicer arietinum] 96 1e-17
gb|AAT39963.1| putative polyprotein [Solanum demissum] 89 2e-15
gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sati... 81 4e-13
gb|AAT85304.1| reverse transcriptase (RNA-dependent DNA polymera... 81 5e-13
gb|AAT77888.1| putative retrotransposon gag protein [Oryza sativ... 80 8e-13
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi... 80 1e-12
gb|AAP52791.1| putative pol polyprotein [Oryza sativa (japonica ... 80 1e-12
ref|XP_474632.1| OSJNBa0039G19.2 [Oryza sativa (japonica cultiva... 79 1e-12
emb|CAB80803.1| AT4g03800 [Arabidopsis thaliana] gi|3695395|gb|A... 79 2e-12
pir||E96549 hypothetical protein F11M15.5 [imported] - Arabidops... 79 2e-12
gb|AAP53041.1| putative retroelement [Oryza sativa (japonica cul... 77 7e-12
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 536 bits (1380), Expect = e-150
Identities = 356/993 (35%), Positives = 524/993 (51%), Gaps = 103/993 (10%)
Query: 156 NADSFKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHC 215
N+ F ++ LV + +P KFK P FD+YNG +CP+ H+ Y RK+ Y D++ + ++
Sbjct: 148 NSLGFDVTNMGLVEGLRIPYKFKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYF 207
Query: 216 FQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSHYGFNIRLKPNREFLRSLS*KKEESFR 275
FQDSL + +WY L ++ I + +L AF Y N+ + P+R L+SL K ESF+
Sbjct: 208 FQDSLSGASLDWYMELKRDSIRCWKDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFK 267
Query: 276 EYAQRWKGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAV 335
EYAQRW+ AAR+ P + E E+T F+ TL+ +++RM +FS++V G R E +
Sbjct: 268 EYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSCPFVSFSDVVICGERTESLI 327
Query: 336 REGIIVFEKAESSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPY 395
+ G I ++ ++SK+ G +++E E V Q+ + + A +P
Sbjct: 328 KTGKI----QDAGSSSSKKPFAGAPRRREGETNAVQYRRDQNRSQRCQVAAVTIPA---- 379
Query: 396 VSYSQHPFFPPFYHQYPLPPGQPQVPVYAIAQQMKQQLPVQQQQQNQQARPTFPPIPMLY 455
P P Q Q V QQ +QQ P Q +Q+ R F +PM Y
Sbjct: 380 ----------------PQPRQQQQQRVQQPQQQQQQQRPYQPRQRMPDRR--FDSLPMSY 421
Query: 456 AELLPTLLHRGHCTTRQGKPAPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLI 515
AELLP LL G R P P LPP + ++++CDFH GA GH E C AL++ V+ LI
Sbjct: 422 AELLPELLRLGMVELRTMAP-PTVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLI 480
Query: 516 DQGKLTFENNVPHVLDNPLPNHAA--VNMIEVCE-EAPRLDVRNVATPLVPLHIKLHKAS 572
D + F VP+V++NP+P H VN IE E E ++V +V T L+ + +L
Sbjct: 481 DAKAINFAP-VPNVVNNPMPQHGGHRVNNIEGKEAEDLVVNVDDVQTSLLVVKGRLLNGG 539
Query: 573 LFSHDHAKCLGCLRNPLGCYTVQDDIQSLMNDNFL----------TVSDVCVI------- 615
++S CLGC + GC ++ IQ +M++ L TVS + +
Sbjct: 540 VYSGCDEDCLGCAESENGCDQLRTGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPSEGR 599
Query: 616 ------VPVFHDPPVK-SLPLKENAEPLVIRLPGPVPYTSDRAIPYKYNATIIENG---- 664
P + PV S+P+ +A P I G + RA+P+KY+ N
Sbjct: 600 GQRVVSAPATNGTPVTISVPVTISA-PTTIAASGRRAVENSRAVPWKYDNAYRSNRRAES 658
Query: 665 ----VEVPLVSLAVMNNTAEGTSTAL----------RSGRV-RPPLFQKKAATPTVPPID 709
V V++ + N A+ RSGR+ P + A
Sbjct: 659 QTRPVNQAPVTIGLPNRVPATVGPAVDNVGGPGGFTRSGRLFAPQPLRDNNAEALAKAKG 718
Query: 710 KPTPTDVSPVNRDASQPGRSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKISILSLLLSS 769
K + PV ++A P S E +++E +++IK+SDYKIVDQL QTPSKISILSLLL S
Sbjct: 719 KQAVVEEEPVQKEA--PEGSFE-KDVEEFMKIIKKSDYKIVDQLNQTPSKISILSLLLCS 775
Query: 770 AAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWFSEDELPEAGKHHNLALHISV 829
AHR+ LLK+L AYV E++V+ ++ N++ + F+ +L G++HN ALHI++
Sbjct: 776 EAHRNALLKMLNLAYVPQEISVNQLEGVMANVSTRHGVGFTNLDLTPEGRNHNKALHITM 835
Query: 830 NCKSDMISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKAFNGTRKSVLGEIDLP 889
CK ++S+VLVDTGSSLNV+PK L ++ G L S +V+AF+G+++SV GE+ LP
Sbjct: 836 ECKGAVLSHVLVDTGSSLNVLPKQILKKIDVEGFVLTPSDLIVRAFDGSKRSVCGEVTLP 895
Query: 890 ITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFAKSGKLVTIHGEEA 949
+ IGPE F I F VMDI +YSCLLGRPWIH AGAV+STLHQKLK+ +G++VT+ GEE
Sbjct: 896 VKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCGEEE 955
Query: 950 YLVSQLSSFSCIEA-GSAEGT---AFQGLTVEG---TEPKRVGTAMASLKDA*RAVQEGQ 1002
LVS LSSF +E G T AF+ + +E E ++ G ++ S K A V G+
Sbjct: 956 ILVSHLSSFKYVEVDGEIHETLCQAFETVALEKVAYAEQRKPGASITSYKQAKEVVDSGK 1015
Query: 1003 AAGWGRLIQLRENKHKEGLGFSPTSGVSTG-----AFYSAGFVNAITEEATGFGP----- 1052
A GWG+++ L + K G+G+ P G F SAG +N ATG
Sbjct: 1016 AEGWGKMVYLPVKEDKFGVGYEPLQAEQNGQAGPSTFTSAGLMNHGDVSATGSEDCDSDC 1075
Query: 1053 ------RPVFVTPGGIARDWDAIDIPSIMHVSE 1079
RP PGG +W A ++ + ++E
Sbjct: 1076 DLDNWVRP--CAPGGSINNWTAEEVVQVTLLTE 1106
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 534 bits (1376), Expect = e-149
Identities = 387/1156 (33%), Positives = 571/1156 (48%), Gaps = 133/1156 (11%)
Query: 3 QLRTELATLREELAKANDVMTALLAAQEQSATAIPIATAI-PVTTSVLPTASTDARFAMP 61
Q++TELA +R +A+ +M + QE+ + A+ P LP
Sbjct: 3 QVQTELAEMRANMAQFMHMMQGVAQGQEELRALVQRQEAVTPPPNQALPE---------- 52
Query: 62 AGFPYGLPPFFTPSTAAGTSGTANNVLIPATNVV-------SINATLPQTTAAVTEPLVH 114
G P TP+ A + A + V + NA + A P+V
Sbjct: 53 -----GNPVHDTPAAAIPVNNYAVGEELMGIRVDGQPIAPDAANARVIHAPARNRIPIVD 107
Query: 115 TMPQSVNINTQHGSIPVTK-TMEEMMEELAKELRHEIKANQGNADSFKTQDLCLVSKVDV 173
+ ++ IP + ++ LA+++R N+ F ++ LV + +
Sbjct: 108 RQEDLFTMFSEDEDIPGRNDARDRKVDALAEKIR---AMECQNSLGFDVTNMGLVEGLRI 164
Query: 174 PKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSK 233
P KFK P FD+YNG +CP+ H+ Y RK+ Y D++ + ++ FQDSL + +WY L
Sbjct: 165 PYKFKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKS 224
Query: 234 NDIHTFDELAAAFKSHYGFNIRLKPNREFLRSLS*KKEESFREYAQRWKGAAARITPALD 293
+ I + +L AF Y N+ + P+R L+SL K ESF+EYAQRW+ AAR+ P +
Sbjct: 225 DSIRCWRDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSNESFKEYAQRWRELAARVQPPML 284
Query: 294 EEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNASK 353
E E+T F+ TL+ +++RM +FS++V G R E ++ G I + ++SK
Sbjct: 285 ERELTDMFIGTLQGVFMDRMGSCPFGSFSDVVICGERTESLIKTGKI----QDVGSSSSK 340
Query: 354 RYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYVSYSQHPFFPPFYHQYPL 413
+ G +++E E V Q+ A +P P Q P
Sbjct: 341 KPFAGAPRRREGETNAVQHRRDQNRIEYRQAAAVTIPAPQPRQQQQQRVQQP-------- 392
Query: 414 PPGQPQVPVYAIAQQMKQQLPVQQQQQNQQARPTFPPIPMLYAELLPTLLHRGHCTTRQG 473
QQ +QQ P Q +Q+ R F +PM YAELLP LL G
Sbjct: 393 -------------QQQQQQRPYQPRQRMPDRR--FDSLPMSYAELLPELLRLGLVELCTM 437
Query: 474 KPAPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNP 533
P P LPP + ++++CDFH GA GH E C AL++ V+ LID + F VP+V++NP
Sbjct: 438 AP-PTVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDANAINFAP-VPNVVNNP 495
Query: 534 LPNHAA--VNMIEVCEEAPRLD-VRNVATPLVPLHIKLHKASLFSHDHAKCLGCLRNPLG 590
+P H VN IE E +D V +V T L+ + +L ++S CLGC + G
Sbjct: 496 MPQHGGHRVNNIEGKEAEDLVDNVDDVQTSLLVVKSRLLNEGVYSGCDEDCLGCAESENG 555
Query: 591 CYTVQDDIQSLMNDNFLTVS-------DVCVIVPVF-----HDPPVKSLPLKENAEPLVI 638
C ++ IQ +M++ L S V I F H V S P N P+ I
Sbjct: 556 CDQLRAGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPSEGHGQRVVSAPAT-NGTPVTI 614
Query: 639 RLPGPV--PYT----------SDRAIPYKY-----------------NATIIENGV--EV 667
+P + P T + RA+P+KY N T + G+ V
Sbjct: 615 PVPVTISAPTTIVASGRRAVENSRAVPWKYDNAYRSNRRVESQTKPVNQTPVTIGLANRV 674
Query: 668 PLVSLAVMNNTAEGTSTALRSGRV-RPPLFQKKAATPTVPPIDKPTPTDVSPVNRDASQP 726
P ++N G RSGR+ P + A K + PV ++A P
Sbjct: 675 PATVGPAVDNVG-GPGGFTRSGRLFAPQPLRDNNAEALAKAKGKQAVVEEEPVQKEA--P 731
Query: 727 GRSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVD 786
S E +++E +++IK+SDYKIVDQL QTPSKISILSLLL S AHR+ LLK+L AYV
Sbjct: 732 EGSFE-KDVEEFMKMIKKSDYKIVDQLNQTPSKISILSLLLCSEAHRNALLKMLNLAYVP 790
Query: 787 HEVTVDHFGSIVGNITACSNLWFSEDELPEAGKHHNLALHISVNCKSDMISNVLVDTGSS 846
E++V+ ++ N++ + F+ +LP G++HN ALHI++ CK ++S+VLVDTGSS
Sbjct: 791 QEISVNQLEGVMANVSTRHGVGFTNLDLPPEGRNHNKALHITMECKGAVLSHVLVDTGSS 850
Query: 847 LNVMPKSTLDQLSYRGTPLRRSTFLVKAFNGTRKSVLGEIDLPITIGPETFLITFQVMDI 906
LNV+PK L ++ G L S +V+AF+ +++SV GE+ LP+ IGPE F I F VMDI
Sbjct: 851 LNVLPKQILKKIDVEGFVLTPSDLIVRAFDRSKRSVCGEVTLPVKIGPEVFDIIFYVMDI 910
Query: 907 NASYSCLLGRPWIHDAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEA-GS 965
+YSCLLGRPWIH AGAV+STLHQKLK+ +G++VT+ GEE LVS LSSF +E G
Sbjct: 911 QPAYSCLLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGE 970
Query: 966 AEGT---AFQGLTVEG---TEPKRVGTAMASLKDA*RAVQEGQAAGWGRLIQLRENKHKE 1019
T F+ + +E E ++ G ++ S K A V G+A GWG+++ L + K
Sbjct: 971 IHETLCQVFETVALEKVAYAEQRKPGVSITSYKQAKEVVDSGKAEGWGKMVDLPVKEDKF 1030
Query: 1020 GLGFSPTSGVSTG-----AFYSAGFVNAITEEATGFGP-----------RPVFVTPGGIA 1063
G+G+ P G F SAG +N ATG RP PGG
Sbjct: 1031 GVGYEPLQAEQNGQAGPSTFTSAGLMNHGDVSATGSEDCDSDCDLDNWVRP--CAPGGSI 1088
Query: 1064 RDWDAIDIPSIMHVSE 1079
+W A ++ + ++E
Sbjct: 1089 NNWTAEEVVQVTLLTE 1104
>gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum]
Length = 1105
Score = 531 bits (1367), Expect = e-148
Identities = 356/1020 (34%), Positives = 532/1020 (51%), Gaps = 114/1020 (11%)
Query: 109 TEPLVHTMPQSVNINT----QHGSIPVTKTMEEMMEELAKE----------------LRH 148
++P+V P + N T +P+ E+M L+++ L
Sbjct: 83 SQPIV---PDAANARTIRAPARNPVPIVDRQEDMFTLLSEDEDVLGRVDERDRKVDALAE 139
Query: 149 EIKANQ-GNADSFKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKD 207
+I+A + N+ SF ++ LV + +P KFK P FD+YN +CP+ H+ Y RK+ Y D
Sbjct: 140 KIRAMECQNSLSFDVTNMGLVEGLRIPYKFKAPSFDKYNDTSCPRTHVQAYYRKISAYTD 199
Query: 208 NDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSHYGFNIRLKPNREFLRSLS 267
++ + ++ FQDSL + +WY L ++ I + +L AF Y N+ + P+R L+SL
Sbjct: 200 DEKMWMYFFQDSLSGASLDWYMELKRDSIRCWRDLGEAFLRQYKHNMDMAPSRTQLQSLC 259
Query: 268 *KKEESFREYAQRWKGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTM 327
K ESF+EYAQRW+ AAR+ P + E E+T F+ TL+ +++RM +FS++V
Sbjct: 260 QKSGESFKEYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSCPFGSFSDVVIC 319
Query: 328 GTRLEEAVREGIIVFEKAESSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAA 387
G R E ++ G I + ++SK+ G +++E E +V Q+ A
Sbjct: 320 GERTESLIKTGKI----QDVGSSSSKKPFAGAPRRREGETNVVQHRRDQNRIEYRQAAAV 375
Query: 388 QMPPSYPYVSYSQHPFFPPFYHQYPLPPGQPQVPVYAIAQQMKQQLPVQQQQQNQQARPT 447
+P P P Q Q V QQ +QQ P Q +Q+ R
Sbjct: 376 TIPA--------------------PQPRQQQQQRVQQPQQQQQQQRPYQPRQRMPDRR-- 413
Query: 448 FPPIPMLYAELLPTLLHRGHCTTRQGKPAPDPLPPRFRSDLKCDFHQGALGHDVEGCYAL 507
F +PM YAELLP LL G R P P LPP + ++++CDFH GA GH E C AL
Sbjct: 414 FDSLPMSYAELLPELLRLGMVELRTMAP-PTVLPPGYDANVRCDFHSGAPGHHTEKCRAL 472
Query: 508 KYIVKKLIDQGKLTFENNVPHVLDNPLPNHAA--VNMIEVCE-EAPRLDVRNVATPLVPL 564
++ V+ LID + F VP+V++NP+P H VN IE E E ++V +V T L+ +
Sbjct: 473 QHKVQDLIDAKAINFAP-VPNVVNNPMPQHGGHRVNNIEGKEAEDLVVNVDDVQTSLLVV 531
Query: 565 HIKLHKASLFSHDHAKCLGCLRNPLGCYTVQDDIQSLMNDNFL----------TVSDVCV 614
+L ++S CLGC + GC ++ IQ +M++ L TVS + +
Sbjct: 532 KGRLLNGGVYSGCDEDCLGCAESENGCDQLRAGIQGMMDEGCLQFSRAVKDRGTVSTITI 591
Query: 615 I-------------VPVFHDPPVK-SLPLKENAEPLVIRLPGPVPYTSDRAIPYKYNATI 660
P +D PV S+P+ +A P I G + R +P+KY+
Sbjct: 592 YFKPTEGRGQRVVSAPATNDTPVTISVPVTISA-PTTIVASGRRAVENSRVVPWKYDNAY 650
Query: 661 IENG--------VEVPLVSLAVMNNTAEGTSTAL----------RSGRV-RPPLFQKKAA 701
N V V++ + N A+ RSGR+ P + A
Sbjct: 651 RSNRRAESQTRPVNQAPVTIGLPNRVPATVGPAVDNVGGPGGFTRSGRLFAPQPLRDNNA 710
Query: 702 TPTVPPIDKPTPTDVSPVNRDASQPGRSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKIS 761
K + PV ++A + + +++E +++IK+SDYKIVDQL QTPSKIS
Sbjct: 711 EALAKAKGKQAVVEEEPVQKEAPE---GTFEKDVEEFMKIIKKSDYKIVDQLNQTPSKIS 767
Query: 762 ILSLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWFSEDELPEAGKHH 821
ILSLL+ S AHR+ LLK+L AYV E++V+ ++ N++ + F+ +LP G++H
Sbjct: 768 ILSLLMCSEAHRNALLKMLNLAYVPQEISVNQLEGVMANVSTRHGVGFTNLDLPPEGRNH 827
Query: 822 NLALHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKAFNGTRKS 881
N ALHI++ CK ++S+VLVDTGSSLNV+P L ++ G L S +V+AF+G+++S
Sbjct: 828 NKALHITMECKGAVLSHVLVDTGSSLNVLPNQILKKIDVEGFVLTPSDLIVRAFDGSKRS 887
Query: 882 VLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFAKSGKL 941
V GE+ LP+ IGPE F I F VMDI +YSCLLGRPWIH AGAV+STLHQKLK+ +G++
Sbjct: 888 VCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTLHQKLKYVWNGQI 947
Query: 942 VTIHGEEAYLVSQLSSFSCIEA-GSAEGT---AFQGLTVEG---TEPKRVGTAMASLKDA 994
VT+ GEE LVS LSSF +E G T AF+ + +E E ++ G ++ S K A
Sbjct: 948 VTVCGEEEILVSHLSSFKYVEVDGEIHETLCQAFETVALEKVAYAEQRKPGASITSYKQA 1007
Query: 995 *RAVQEGQAAGWGRLIQLRENKHKEGLGFSPTSGVSTG-----AFYSAGFVNAITEEATG 1049
V G+A GWG+++ L + K G+G+ P G F SAG +N ATG
Sbjct: 1008 KEVVDSGKAEGWGKMVDLPVKEDKFGVGYEPLRAEQNGQAGPSTFTSAGLMNHGDVSATG 1067
>pir||T09671 RPE15 protein - alfalfa (fragment) gi|840619|gb|AAB50037.1| RPE15
gene product
Length = 219
Score = 260 bits (664), Expect = 4e-67
Identities = 133/196 (67%), Positives = 154/196 (77%), Gaps = 10/196 (5%)
Query: 280 RWKGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGI 339
R + AAAR++P LDEEE+TQTFLKTLKK++ ERMI++APNNFS+MVTMGTRLEEAVREGI
Sbjct: 9 RVERAAARVSPRLDEEELTQTFLKTLKKEHKERMIVSAPNNFSDMVTMGTRLEEAVREGI 68
Query: 340 IVFEKAESSVNASKRYGNGHHKKKET-EVGMVSAGAGQSMATVAPINAAQMPPSYPYVSY 398
IV EK E S +A K+YGNGHHK+KE+ +VGMVS P+NA Q+P Y Y+
Sbjct: 69 IVLEKGECSASAPKKYGNGHHKRKESKKVGMVSGNHD------TPVNATQLPLPYQYMQI 122
Query: 399 SQHPFFPPFYHQYPLPPGQPQVPVYAIAQQMKQQLPVQQQQQNQQA-RPT--FPPIPMLY 455
SQHPFFPPFY QYPLPPGQP VPV A+AQQ++ Q P QQQQQ QQ RP FPPIPM Y
Sbjct: 123 SQHPFFPPFYQQYPLPPGQPPVPVNAMAQQVQHQPPAQQQQQQQQGPRPKTYFPPIPMRY 182
Query: 456 AELLPTLLHRGHCTTR 471
AELLPTLL +GHC TR
Sbjct: 183 AELLPTLLAKGHCVTR 198
>gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Length = 1784
Score = 219 bits (558), Expect = 9e-55
Identities = 181/614 (29%), Positives = 278/614 (44%), Gaps = 98/614 (15%)
Query: 444 ARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPAPDPLPPRFRSDLKCDFHQGALGHDVEG 503
A+ F PI YA L L + + K + +P P C + A GH++E
Sbjct: 888 AKDEFTPIGESYASLFQKLRTLNVLSPIERKMS-NPPPRNLDYSQHCAYCSDAPGHNIER 946
Query: 504 CYALKYIVKKLIDQGKLTFEN-NVPHVLDNPLPNHAAVNMIEVCEEAPRLDVRNVATPLV 562
C+ LK ++ LID ++ E+ N P++ NPLP H NM+E+ VA P
Sbjct: 947 CWYLKKAIQDLIDTRRIIVESPNGPNINQNPLPRHTETNMLEMVNNH-----EEVAVPYK 1001
Query: 563 PLHIKLH---KASLFSHDHAKCLGCLRNPLGCYTVQDD----------IQSLMNDNFLTV 609
P+ +K+ ++S D K + P G + + I+ + D + +
Sbjct: 1002 PI-LKVETGMESSTNVIDLTKIM-----PSGAESTSEKLTPSSAPILTIKGALEDVWASQ 1055
Query: 610 SDVCVIVPVFHDPPVKSLPLKENAEPLVIRLPGPVPYTSDRAIPYKYNATIIE-NGVEVP 668
+ ++VP D P+ + P++IR +P T+ +A+P+ Y T++ G E+
Sbjct: 1056 REARLVVPRGPDKPILIVQ-GAYIPPVIIRPVSQLPMTNPKAVPWNYEPTVVTYEGKEI- 1113
Query: 669 LVSLAVMNNTAEGTSTALRSGRVRPPLFQKKAATPTVPPIDKPTPTDVSPVNRDASQPGR 728
N + RSGR T++ D Q
Sbjct: 1114 -------NEEVDEIGGMTRSGRCY-------------------ALTELRKNKNDQMQVKS 1147
Query: 729 SIEDSNLDEILRLIKRSDYKIVDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHE 788
+ + +E LR +K SDY IV+QL +TP++IS+LSLL+ S AHR ++K+L +A+V +E
Sbjct: 1148 PVTEGEAEEFLRKMKLSDYSIVEQLRKTPAQISLLSLLIHSDAHRKAVIKILNEAHVPNE 1207
Query: 789 VTVDHFGSIVGNITACSNLWFSEDELPEAGKHHNLALHISVNCKSDMISNVLVDTGSSLN 848
VTV I G I + + FS+DELP GS N
Sbjct: 1208 VTVSQLEKIAGRIFEVNRITFSDDELPV--------------------------EGSGAN 1241
Query: 849 VMPKSTLDQLSYRGTPLRRSTFLVKAFNGTRKSVLGEIDLPITIGPETFLITFQVMDINA 908
+ P STL +L+ +R + V+AF+GT+ +GEI+L + IG F + FQV++INA
Sbjct: 1242 ICPLSTLQKLNVNVERVRPNNVCVRAFDGTKTDAIGEIELILKIGHVDFTVNFQVLNINA 1301
Query: 909 SYSCLLGRPWIHDAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEAGSA-E 967
SY+ LLGRPW+H AGAV STLHQ +KF + V +H E V + SS I+A + E
Sbjct: 1302 SYNLLLGRPWVHRAGAVPSTLHQMVKFEYDRQEVIVHSEGDLSVYKDSSLPFIKANNENE 1361
Query: 968 GTAFQGLTV-------EGTEPKRVGTAMASLKDA*RAVQEGQAAGWGRLIQL-------- 1012
+Q V EG + MAS+ ++ G G G I L
Sbjct: 1362 ALVYQAFEVVVVEHILEGNLISKPQLPMASVMMVNEMLKHGFEPGKGLGIFLQGRAYPVS 1421
Query: 1013 -RENKHKEGLGFSP 1025
R++ GLG+ P
Sbjct: 1422 PRKSLGTFGLGYKP 1435
Score = 110 bits (276), Expect = 4e-22
Identities = 97/367 (26%), Positives = 159/367 (42%), Gaps = 58/367 (15%)
Query: 61 PAGFPYGLPPFFTPSTAAGTSGTANNVLIPATNVVSINATLPQTTAAVTEPLVHTMPQSV 120
P P P F P+ A T+ T+N ++P +N L E L +P S
Sbjct: 598 PLNTPMMSNPLFVPT--APTNSTSNPTVVPKSNNDPSFQVLHDHGYTPEEAL--KIPSSY 653
Query: 121 NINTQHGS-IPVTKTME-EMMEELAKELR---HEIKANQG--NADSFKTQDLCLVSKVDV 173
Q+ S + KT++ E EE+AK+++ I+ QG DLC+ V +
Sbjct: 654 PQTHQYSSPFKIEKTVKNEEHEEMAKKMKSLEQSIRDMQGLGGHKGISFSDLCMFPHVHL 713
Query: 174 PKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSK 233
P + + L++ F +SL+ A+EW+
Sbjct: 714 PT----------------------------GAEGKEELLMAYFGESLVGIASEWFIDQDI 745
Query: 234 NDIHTFDELAAAFKSHYGFNIRLKPNREFLRSLS*KKEESFREYAQRWKGAAARITPALD 293
+ HT+D LA F + +NI + P+R L ++ K E+FREYA RW+ AAR+ ++
Sbjct: 746 ANWHTWDNLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRWREQAARVKLSMK 805
Query: 294 EEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNASK 353
E EM FL+ + DY ++ A F E++ +G +E ++ G IV + A + +
Sbjct: 806 ESEMIDVFLQAQEPDYFHYLLSAVGKTFVEVIKVGEMVENGIKSGKIVSQAALKATTQAL 865
Query: 354 RYGNGH--HKKKETEVGMVSAGA-------GQSMAT----------VAPINAAQMPPSYP 394
+ G+G+ KK+ +V V GA G+S A+ ++PI P
Sbjct: 866 QNGSGNIGGKKRREDVATVGNGAKDEFTPIGESYASLFQKLRTLNVLSPIERKMSNPPPR 925
Query: 395 YVSYSQH 401
+ YSQH
Sbjct: 926 NLDYSQH 932
>gb|AAT39964.1| putative gag polyprotein [Solanum demissum]
Length = 421
Score = 150 bits (378), Expect = 7e-34
Identities = 105/364 (28%), Positives = 175/364 (47%), Gaps = 32/364 (8%)
Query: 61 PAGFPYGLPPFFTPSTAAGTSGTANNVLIPATNVVSINATLPQTTAAVTEPLVHTMPQSV 120
P P P F P+ A T+ T+N ++P +N L E L +P S
Sbjct: 78 PLNTPMMSNPLFVPT--APTNSTSNPTVVPKSNNDPSFQVLHDHGYTPEEAL--KIPSSY 133
Query: 121 NINTQHGS-IPVTKTME----EMMEELAKELRHEIKANQG--NADSFKTQDLCLVSKVDV 173
Q+ S + KT++ E M + K L H I+ QG DLC+ V +
Sbjct: 134 PQTHQYSSPFKIEKTVKNEEHEEMTKKMKSLEHSIRDMQGLGGHKGISFSDLCMFPHVHL 193
Query: 174 PKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSK 233
P FK P+F++Y+G P H+ +Y ++ + + L++ F +SL+ A++W+
Sbjct: 194 PTGFKTPNFEKYDGHGDPIAHLKRYYNQLRGAEGKEELLMAYFGESLVGIASKWFIDQDI 253
Query: 234 NDIHTFDELAAAFKSHYGFNIRLKPNREFLRSLS*KKEESFREYAQRWKGAAARITPALD 293
+ HT+D+LA F + +NI + P+R L ++ K E+FREYA RW+ AAR+ P +
Sbjct: 254 ANWHTWDDLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRWREQAARVKPPMK 313
Query: 294 EEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNASK 353
E EM FL+ + DY ++ A F+E++ +G +E ++ G IV + A + +
Sbjct: 314 ELEMIDVFLQAQEPDYFHYLLSAVGKTFTEVIKVGEMVENGIKSGKIVSQAALKATTQAL 373
Query: 354 RYGNGH---HKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYVSYSQHPFFPPFYHQ 410
G+G+ K++E +VSA P +Y +++QH +FPP Q
Sbjct: 374 PNGSGNIGGKKRREDVATVVSA-----------------PRTYAQDNHTQH-YFPPQIPQ 415
Query: 411 YPLP 414
Y +P
Sbjct: 416 YLVP 419
>ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 113 bits (282), Expect = 9e-23
Identities = 81/288 (28%), Positives = 133/288 (46%), Gaps = 21/288 (7%)
Query: 680 EGTSTALRSGRVRPPLFQKKAATPTVPPIDKPTPTDVSPVNRDASQPGRSIEDSNLDEIL 739
E + +LR G+ P + K VP +DKP + AS PG + E
Sbjct: 1252 EEVNISLRGGKTLPDPHKSK-----VPNVDKPA--------KKASPPGEAPEAPETKTGS 1298
Query: 740 RLIKRSDYKIVDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVG 799
+ DYK++ L + P+ +S+ L+ R+ L+K L+ V H +
Sbjct: 1299 KEKPAVDYKVLAHLKRIPALLSVYDALMMVPDLREALIKALQAPEVYEVDMAKH--RLYD 1356
Query: 800 NITACSNLWFSEDELPEAGKHHNLALHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLS 859
N + + F++++ G HN L+I N S + +L+D GS++N++P +L +
Sbjct: 1357 NPLFVNEITFADEDNIIKGGDHNRPLYIEGNIGSAHLRRILIDLGSAVNILPVRSLTRAG 1416
Query: 860 YRGTPLRRSTFLVKAFNGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWI 919
+ L ++ F+ K LG I + I + +F + F V++ N SYS LLGRPWI
Sbjct: 1417 FTTKDLEPIDVVICGFDNQGKPTLGAITIKIQMSTFSFKVRFFVIEANTSYSALLGRPWI 1476
Query: 920 HDAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEAGSAE 967
H V STLHQ LKF +G + + S S ++ E+ A+
Sbjct: 1477 HKYRVVPSTLHQCLKFLDG------NGVQQRITSNFSPYTIQESYHAD 1518
>emb|CAD41628.3| OSJNBa0091D06.8 [Oryza sativa (japonica cultivar-group)]
gi|50926818|ref|XP_473330.1| OSJNBa0091D06.8 [Oryza
sativa (japonica cultivar-group)]
Length = 2657
Score = 111 bits (277), Expect = 3e-22
Identities = 78/264 (29%), Positives = 128/264 (47%), Gaps = 11/264 (4%)
Query: 704 TVPPIDKPTPTDVSPVNRDASQPGRSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKISIL 763
T+P K P+ V ++AS PG + E + I DY ++ L + P+ +S+
Sbjct: 1348 TLPDPHKAKPSKVDKPIKEASPPGEAPETKARSKEKPDI---DYNVLAHLKRIPALLSVY 1404
Query: 764 SLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWFSEDELPEAGKHHNL 823
L+ R+ L+K L+ V H + N + + F++++ G HN
Sbjct: 1405 DALILVPDLREALIKALQTPEVYEVDMAKH--RLFNNPLFVNEITFADEDNIIEGSDHNR 1462
Query: 824 ALHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKAFNGTRKSVL 883
L+I N + +L+D GS++N++P +L + + L + ++ F+ KS L
Sbjct: 1463 PLYIEGNIGPAHLRRILIDPGSAVNILPVRSLTRAGFTTKDLEPTDMVICGFDNQGKSTL 1522
Query: 884 GEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFAKSGKLVT 943
G I + I + +F + F V++ N SYS LLGRPWIH V STLHQ LKF GK
Sbjct: 1523 GAITVKIQMSTFSFKVHFFVIEANTSYSALLGRPWIHKYRVVPSTLHQCLKFL-DGK--- 1578
Query: 944 IHGEEAYLVSQLSSFSCIEAGSAE 967
G + +V SS++ E+ A+
Sbjct: 1579 --GAQQRIVGNSSSYTIQESYHAD 1600
Score = 45.8 bits (107), Expect = 0.017
Identities = 68/385 (17%), Positives = 143/385 (36%), Gaps = 85/385 (22%)
Query: 171 VDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTS 230
V P ++ P F +++ + H+ + G+ +N SL++ F SL A WY+
Sbjct: 842 VAFPARWHPPKFRQFDRTGDAREHLAYFEAACGDTANNSSLLLRQFSGSLTGPAFHWYSR 901
Query: 231 LSKNDIHTFDELAAAFKSHYGFNIRLKPNREF--LRSLS*KKEESFREYAQRWKGAAARI 288
L I ++ + K H+ + +K + L + +++E+ +Y R++ + R+
Sbjct: 902 LPTGSIRSWASMKEVLKKHF---VAMKKDFSIVELSQVRQRRDEAIDDYVIRFRNSFVRL 958
Query: 289 TPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAESS 348
+ E+ + L + T+LE I+ K S+
Sbjct: 959 AREMHLEDAIEIALSS--------------------AVAATKLEFENSPQIMELYKNASA 998
Query: 349 VNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYVSYSQHPFFPPFY 408
+ +K + +G G A N A++ + P
Sbjct: 999 FDPAKHFS-----------ATKPSGGGSKPKAPAEANVARVFSTAP-------------- 1033
Query: 409 HQYPLPPGQPQVPVYAIAQQMKQQLPVQQQQQNQQARPTFPPI----PMLYAELLPTLLH 464
Q QVP+ L + +Q + RP+ + + EL+ + +
Sbjct: 1034 --------QGQVPM----------LGAKNEQARGRQRPSIQDLLKKQYIFRRELVKDMFN 1075
Query: 465 RGHCTTRQGKPAPDPLPP----RFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKL 520
+ + P+P P + L C +H+ +G+ +E C A K +++ +++ ++
Sbjct: 1076 Q--LKEHRALNLPEPWRPDQVTMVDNPLYCPYHR-YVGYAIEDCVAFKEWLQRAVNEKRI 1132
Query: 521 TFENNVPHVLDNPLPNHAAVNMIEV 545
+ D P++ AVNM+ V
Sbjct: 1133 NLD------ADAINPDYRAVNMVSV 1151
>gb|AAU89777.1| gag-pol polyprotein-like [Solanum tuberosum]
Length = 1716
Score = 104 bits (259), Expect = 4e-20
Identities = 76/277 (27%), Positives = 126/277 (45%), Gaps = 20/277 (7%)
Query: 591 CYTVQDDIQSLMNDNFLTVSDVCVIVPVFHDPPVKSLPLKENAEPLVIRLPGPVPYTSDR 650
C ++ IQ L+N N +++ V P V S PL + + + + +
Sbjct: 478 CINLKHKIQDLINQNVVSLQTVA--------PNVNSNPLPNHGGITINMIETDEDWCVMK 529
Query: 651 AIPYKYNATIIENGVEVPLVSLAVMNN------TAEGTSTAL-RSGRVRPPLFQKKAATP 703
AI I + +E + SL++ T E + R VRP + AT
Sbjct: 530 AI-----VLIAPDKLERAVASLSIREKKEFVILTPEKVVALVPRETLVRPKFVIETTATQ 584
Query: 704 TVPPIDKPTPTDVSPVNRDASQPGRSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKISIL 763
+ + + + SI + +E R ++ DY IV L +TP++IS+
Sbjct: 585 GMTRSGRCYTPEELAQGGQKKEKKSSINKAKAEEFWRRMQPKDYSIVKYLEKTPAQISVW 644
Query: 764 SLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWFSEDELPEAGKHHNL 823
+LL+SS HR L+K L+ YV D+ +++ + + F ++ELP G+ HN
Sbjct: 645 ALLMSSQLHRQALMKALDDTYVPVGTNSDNLAAMINQVIRGHRISFCDEELPFEGRMHNK 704
Query: 824 ALHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLSY 860
ALH++ C+ +I+ VLVD GS LN+ P STL L +
Sbjct: 705 ALHVTTMCRDKIINRVLVDDGSGLNICPLSTLRHLKF 741
Score = 93.6 bits (231), Expect = 7e-17
Identities = 80/295 (27%), Positives = 126/295 (42%), Gaps = 73/295 (24%)
Query: 258 PNREFLRSLS*KKEESFREYAQRWKGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAA 317
P+R L + K ES+RE+A RW+ AAR+ P + E+E+ + F++ K
Sbjct: 299 PDRYSLEKMKQKSTESYREFAYRWRKEAARVRPPMSEKEIVEVFVRVAK----------- 347
Query: 318 PNNFSEMVTMGTRLEEAVREGIIVFEKA--ESSVNASKRYGNGHHKKKETEVGMVSAGAG 375
F+E+V +G +E+ +R G IV+ A ESS+ KKK +V +S G
Sbjct: 348 ---FAEIVKIGETIEDGLRTGKIVYVAASPESSILL---------KKKRDDVSSISY-EG 394
Query: 376 QSMATVAPINAAQMPPSYPYVSYSQHPFFPPFYHQYPLPPGQPQVPVYAIAQQMKQQLPV 435
+ A + + PS+ S+ + P
Sbjct: 395 KKTAKKSSSCQGRSRPSHS--SFEKKP--------------------------------- 419
Query: 436 QQQQQNQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPAPDPLPPRFRSDLKCDFHQG 495
AR F P+ +L L G+ KP D +R D +C +H
Sbjct: 420 --------AR-NFTPLIKSRTKLFERLTVAGYIHPVGPKPV-DTSSKFYRPDQRCAYHSN 469
Query: 496 ALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHA--AVNMIEVCEE 548
++GHD E C LK+ ++ LI+Q ++ + P+V NPLPNH +NMIE E+
Sbjct: 470 SVGHDTEDCINLKHKIQDLINQNVVSLQTVAPNVNSNPLPNHGGITINMIETDED 524
>emb|CAC44143.1| putative gag polyprotein [Cicer arietinum]
Length = 88
Score = 96.3 bits (238), Expect = 1e-17
Identities = 41/88 (46%), Positives = 59/88 (66%)
Query: 165 LCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDA 224
+CLV V +P+KFK+ +F++Y G TCP+NH+ Y RKM ++ ND L+IH FQDSL +
Sbjct: 1 MCLVPDVTIPRKFKVLEFEKYKGATCPKNHLTMYGRKMASHAHNDKLLIHFFQDSLSGAS 60
Query: 225 AEWYTSLSKNDIHTFDELAAAFKSHYGF 252
WY L +N IH++ +LA AF Y +
Sbjct: 61 LSWYMHLERNRIHSWKDLADAFLRQYKY 88
>gb|AAT39963.1| putative polyprotein [Solanum demissum]
Length = 1483
Score = 88.6 bits (218), Expect = 2e-15
Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 28/209 (13%)
Query: 643 PVPYTSDRAIPYKYNATIIE-NGVEVPLVSLAVMNNTAEGTSTALRSGRVRPPLFQKKAA 701
P+P T+ +A+P+KY T++ G E+ N + RS R P +K
Sbjct: 65 PLPMTNPKAVPWKYEPTVVTYKGKEI--------NEKVDEIEGMTRSRRCYAPAELRKN- 115
Query: 702 TPTVPPIDKPTPTDVSPVNRDASQPGRSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKIS 761
N D Q + + +E LR +K SDY IV+QL +TP++IS
Sbjct: 116 ------------------NNDQMQVKSPVTEREAEEFLRKMKLSDYSIVEQLRKTPAQIS 157
Query: 762 ILSLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWFSEDELPEAGKHH 821
+LSLL+ S HR ++K+L +A+V +E T+ I G I + + FS+DELP
Sbjct: 158 LLSLLIHSDEHRKVVMKILNEAHVPNEGTMSQLEKIAGRIFEVNCITFSDDELPVEDAIG 217
Query: 822 NLALHISVNCKSDMISNVLVDTGSSLNVM 850
+ L + + ++ +++ +S N++
Sbjct: 218 EIELILKIGPVDFTVNFQVLNINASYNLL 246
Score = 85.9 bits (211), Expect = 2e-14
Identities = 60/163 (36%), Positives = 83/163 (50%), Gaps = 17/163 (10%)
Query: 880 KSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFAKSG 939
+ +GEI+L + IGP F + FQV++INASY+ LLGRPW+H AGAV STLHQ +KF
Sbjct: 213 EDAIGEIELILKIGPVDFTVNFQVLNINASYNLLLGRPWVHRAGAVPSTLHQMVKFEYDR 272
Query: 940 KLVTIHGEEAYLVSQLSSFSCIEAGSA-EGTAFQGLTV-------EGTEPKRVGTAMASL 991
+ V +H E V + SS I+A + E +Q V EG + MAS+
Sbjct: 273 QEVIVHCERDLSVYKDSSLPFIKANNENEALVYQAFEVVVVEHNLEGNLISKPQLPMASV 332
Query: 992 KDA*RAVQEGQAAGWGRLIQL---------RENKHKEGLGFSP 1025
++ G G G I L R++ GLG+ P
Sbjct: 333 MMVNEMLKHGFKLGKGLGIFLQGRAYPVSPRKSLGTFGLGYKP 375
>gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530550|ref|NP_919577.1| putative
retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18581535|gb|AAK52540.2| Putative
retroelement pol polyprotein [Oryza sativa]
Length = 1580
Score = 81.3 bits (199), Expect = 4e-13
Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 7/203 (3%)
Query: 813 ELPEAGKHHNLA-LHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 871
E PE ++ +L L+I+ +S ++VD G+++N+MP +T +L L ++ +
Sbjct: 351 EKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMV 410
Query: 872 VKAFNGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 931
+K F G +G +++ +T+G +T TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 411 LKDFGGNPSETMGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTIHQ 470
Query: 932 KLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEAGSAEGTAFQGLTVEGTEPKRVGTAMASL 991
L G + I ++ L + S+ C E + TV+ + K+ G + S
Sbjct: 471 CL-IQWQGDKIEIVPADSQLKMENPSY-CFEGVMEGSNVYTKDTVDDLDDKQ-GQGLMSA 527
Query: 992 KDA*RAVQEGQAAGWGR--LIQL 1012
D + A G GR LI+L
Sbjct: 528 DDL-EEIDISPAIGQGRHLLIEL 549
>gb|AAT85304.1| reverse transcriptase (RNA-dependent DNA polymerase) domain
containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 1372
Score = 80.9 bits (198), Expect = 5e-13
Identities = 47/147 (31%), Positives = 79/147 (52%), Gaps = 1/147 (0%)
Query: 813 ELPEAGKHHNLA-LHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 871
E PE ++ +L L+I+ +S ++VD G+++N+MP +T +L L ++ +
Sbjct: 424 EKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNVEDLIKTNMV 483
Query: 872 VKAFNGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 931
+K F G G +++ +T+G +T TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 484 LKDFGGNPSETKGVLNVELTVGNKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 543
Query: 932 KLKFAKSGKLVTIHGEEAYLVSQLSSF 958
L + K+ + + A L+ L F
Sbjct: 544 CLIQWQGDKIQIVPADRAKLIELLKEF 570
>gb|AAT77888.1| putative retrotransposon gag protein [Oryza sativa (japonica
cultivar-group)]
Length = 1251
Score = 80.1 bits (196), Expect = 8e-13
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 810 SEDELPEA-GKHHNLALHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRS 868
+E E PE G H L+I+ +S ++VD G+++N+MP +T +L L ++
Sbjct: 685 AEFEKPEGTGNRHLKPLYINGYVNGKSMSKMMVDGGAAVNLMPYATFKKLGRNAEDLIKT 744
Query: 869 TFLVKAFNGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTST 928
++K F G G +++ +T+G +T TF V+D SYS LLGR WIH + ST
Sbjct: 745 NMVLKDFGGNPSETRGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPST 804
Query: 929 LHQKL 933
+HQ L
Sbjct: 805 MHQCL 809
Score = 52.0 bits (123), Expect = 2e-04
Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 170 KVDVPKKFKIPDFDRYNGL--TCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEW 227
+V +P +FK+PDF +++G HI +++ + G D+L F+ SL A W
Sbjct: 235 RVPLPNRFKVPDFSKFSGQEGVSTYEHINRFLAQCGEASAVDALRFRLFRLSLSGSAFTW 294
Query: 228 YTSLSKNDIHTFDELAAAFKSHYGFNIRLKPNREFLRSLS*KKEESFREYAQRWK 282
++SL I+++ +L F S++ ++ + L ++ + +E EY QR++
Sbjct: 295 FSSLPCGSINSWADLEKQFHSYF-YSWVHEMKLSDLTAIKQRHDEPVHEYIQRFR 348
>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411560|pir||E84516 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 764
Score = 79.7 bits (195), Expect = 1e-12
Identities = 55/195 (28%), Positives = 86/195 (43%), Gaps = 27/195 (13%)
Query: 781 EQAYVDHEVTVDHFGSIVGNITAC---------------SNLW------------FSEDE 813
+Q + D V I+G +TAC + LW F+ ++
Sbjct: 277 DQQHNDAPVPRRRVNMIMGGLTACRDSFRSIKEYIKSGAATLWSSPATKEMTPLTFTSED 336
Query: 814 LPEAGKHHNLALHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVK 873
L HN L I ++ ++ +L+DTGSS+NV+ K L ++ ++ S +
Sbjct: 337 LFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIKPSVRPLT 396
Query: 874 AFNGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKL 933
F+G G I LPI +G F V+D Y+ +LG PWIHD A+ S+ HQ +
Sbjct: 397 GFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIPSSYHQCI 456
Query: 934 KFAKSGKLVTIHGEE 948
K S + TI G +
Sbjct: 457 KIPTSIGIETIRGNQ 471
>gb|AAP52791.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532404|ref|NP_920504.1| putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|19881646|gb|AAM01047.1| putative pol polyprotein
[Oryza sativa]
Length = 505
Score = 79.7 bits (195), Expect = 1e-12
Identities = 40/121 (33%), Positives = 65/121 (53%)
Query: 813 ELPEAGKHHNLALHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLV 872
E P+ H L++ + +S +LVD G+++N+MP S +L L+++ ++
Sbjct: 310 EKPDESNRHMKPLYLKGHIDGKPVSRMLVDRGAAVNLMPYSLFKRLGRGDDELKKTNMIL 369
Query: 873 KAFNGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQK 932
FNG G + +T+G +T TF ++D+ SY+ +LGR WIH V STLHQ
Sbjct: 370 NGFNGEPTEAKGIFSVELTMGNKTLPTTFFIVDVQGSYNVILGRCWIHANCCVPSTLHQC 429
Query: 933 L 933
L
Sbjct: 430 L 430
>ref|XP_474632.1| OSJNBa0039G19.2 [Oryza sativa (japonica cultivar-group)]
gi|38347142|emb|CAD39495.2| OSJNBa0039G19.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1136
Score = 79.3 bits (194), Expect = 1e-12
Identities = 46/142 (32%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
Query: 813 ELPEAGKHHNLA-LHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 871
E PE K+ +L L+I+ +S ++VD G+++N+MP +T +L L +++ +
Sbjct: 364 EKPEGTKNRHLKPLYINGYVNEKPMSKMMVDGGAAVNLMPYATFRKLGRNTEDLIKTSMV 423
Query: 872 VKAFNGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 931
+K F G G ++L +T+G +T TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 424 LKDFGGNPSETKGVLNLELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 483
Query: 932 KLKFAKSGKLVTIHGEEAYLVS 953
L + K+ + +++ V+
Sbjct: 484 CLIQWQGNKIEIVLADKSVNVA 505
>emb|CAB80803.1| AT4g03800 [Arabidopsis thaliana] gi|3695395|gb|AAC62796.1| contains
similarity to reverse transcriptase (Pfam: PF00078 rvt,
E=4.3e-08) [Arabidopsis thaliana] gi|7487690|pir||T01961
hypothetical protein T5H22.5 - Arabidopsis thaliana
Length = 637
Score = 79.0 bits (193), Expect = 2e-12
Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 14/144 (9%)
Query: 804 CSNLWFSEDELPEAGKHHNLALHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLSYRGT 863
CS++ F E+E + H+ AL I+++ + IS +LVDTGSS++++ + G
Sbjct: 182 CSSVSFDEEETRHIERPHDDALIITLDVANFKISRILVDTGSSVDLI---------FLGP 232
Query: 864 PLRRSTFLVKAFNGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAG 923
P + AF LG I LP+ G + ++ F V D A+Y+ +LG PWI
Sbjct: 233 PSP-----LVAFTSESAMSLGTIKLPVLAGKMSKIVDFVVFDKPATYNIILGTPWIFQMK 287
Query: 924 AVTSTLHQKLKFAKSGKLVTIHGE 947
AV ST HQ LKF S + TI G+
Sbjct: 288 AVPSTYHQWLKFPTSNGVETIWGD 311
>pir||E96549 hypothetical protein F11M15.5 [imported] - Arabidopsis thaliana
gi|4836930|gb|AAD30632.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 1295
Score = 79.0 bits (193), Expect = 2e-12
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 804 CSNLWFSEDELPEAGKHHNLALHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLSYRGT 863
C + FSE+E + K H+ AL IS++ + + VL+DTGSS++++ TL ++
Sbjct: 445 CPEISFSEEETSDLDKPHDDALVISLDVGNCEVQRVLIDTGSSVDLIFLDTLVRMGISKK 504
Query: 864 PLRRSTFLVKAFNGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAG 923
++ + + +F +L I LP+T +I F V D A+Y+ +LG PW+++
Sbjct: 505 DIKGALSPLVSFTSETSMLLRTITLPVTAQGIVKMIEFTVFDRPAAYNIILGTPWLYEMK 564
Query: 924 AVTSTLHQKLKFAKSGKLVTIHGEE--AYLVSQLSSFS 959
AV ST HQ +KF + I G + + +V +++ S
Sbjct: 565 AVPSTYHQCVKFPTPTGVKQILGSQRTSRIVGEMTGIS 602
Score = 40.0 bits (92), Expect = 0.95
Identities = 24/85 (28%), Positives = 40/85 (46%), Gaps = 7/85 (8%)
Query: 175 KKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYK----DNDSLMIHCFQDSLMEDAAEWYTS 230
+ FK+P YNG P+ ++ + G + D+ + F +SL A W+T
Sbjct: 157 RDFKLPG---YNGKGDPKEYLTFFQVIAGRVPLEPHEEDAGLCKLFSESLSGPALTWFTQ 213
Query: 231 LSKNDIHTFDELAAAFKSHYGFNIR 255
L + I F +L+ AF YG+ I+
Sbjct: 214 LEEGSIDNFKQLSTAFIKQYGYFIK 238
>gb|AAP53041.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532904|ref|NP_920754.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1025
Score = 77.0 bits (188), Expect = 7e-12
Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 813 ELPEAGKHHNLA-LHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 871
E PE ++ +L L+I+ +S ++VD G+++N+MP +T +L L ++ +
Sbjct: 108 EKPEGTENRHLKPLYINGYVNGKPLSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMV 167
Query: 872 VKAFNGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 931
+K F G G +++ +T+G +T TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 168 LKDFGGNPSETKGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 227
Query: 932 KL 933
L
Sbjct: 228 CL 229
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.345 0.151 0.521
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,659,894,571
Number of Sequences: 2540612
Number of extensions: 149689738
Number of successful extensions: 783941
Number of sequences better than 10.0: 1010
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 888
Number of HSP's that attempted gapping in prelim test: 776601
Number of HSP's gapped (non-prelim): 4393
length of query: 2334
length of database: 863,360,394
effective HSP length: 145
effective length of query: 2189
effective length of database: 494,971,654
effective search space: 1083492950606
effective search space used: 1083492950606
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 84 (37.0 bits)
Medicago: description of AC147714.8