BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147714.2 - phase: 0 /pseudo
(971 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO45752.1| pol protein [Cucumis melo] 403 e-110
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 389 e-106
gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica ... 384 e-105
gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsi... 376 e-102
gb|AAT66771.1| putative polyprotein [Solanum demissum] 376 e-102
emb|CAC44142.1| putative polyprotein [Cicer arietinum] 374 e-102
gb|AAV31169.1| putative polyprotein [Solanum tuberosum] 373 e-101
gb|AAT39954.1| putative integrase [Solanum demissum] 367 1e-99
emb|CAB46045.1| retrotransposon like protein [Arabidopsis thalia... 365 3e-99
gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [... 358 5e-97
gb|AAP52185.1| putative polyprotein [Oryza sativa (japonica cult... 357 8e-97
gb|AAP53015.1| putative polyprotein [Oryza sativa (japonica cult... 357 1e-96
gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cult... 357 1e-96
gb|AAP52169.1| putative polyprotein [Oryza sativa (japonica cult... 357 1e-96
emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa (japonica cultivar... 357 1e-96
gb|AAV43973.1| hypothetical protein [Oryza sativa (japonica cult... 357 1e-96
gb|AAX94879.1| retrotransposon protein, putative, Ty3-gypsy sub-... 357 1e-96
emb|CAE75877.1| B1234D02.1 [Oryza sativa (japonica cultivar-grou... 357 1e-96
ref|XP_472517.1| OSJNBa0011E07.12 [Oryza sativa (japonica cultiv... 357 1e-96
ref|XP_471545.1| OSJNBa0019J05.6 [Oryza sativa (japonica cultiva... 356 2e-96
>gb|AAO45752.1| pol protein [Cucumis melo]
Length = 923
Score = 403 bits (1036), Expect = e-110
Identities = 200/376 (53%), Positives = 262/376 (69%), Gaps = 1/376 (0%)
Query: 596 LSLSEVESEHQNLLG*WVLLDVPXWKWDSISMIL*RVAKYX*RDXR-IGGILXR*RKSAH 654
L +V++ Q G L +P WKW+++SM R I ++ R KSAH
Sbjct: 546 LVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAH 605
Query: 655 FLXXNISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSA 714
F+ ++ S+ ++Y+ EIV+ GVP SIVSDRD RFTS+FWK LQ A+G++L S+A
Sbjct: 606 FVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA 665
Query: 715 YHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYG 774
+HPQTDGQ+ER Q LED+LR C LE G+WDSHL L+EF YNNSY ++IGMAPFEALYG
Sbjct: 666 FHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG 725
Query: 775 RRCRTPLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEG 834
R CR+P+CW E GE+ ++GPE+VQ T E +Q I+ +M +QSRQKSY D RRKDLEF+ G
Sbjct: 726 RCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVG 785
Query: 835 DHVFLRVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQ 894
D VFL+V PM GV R + KL+P+F+GP++ILER+G VAYR+ LPP LS +H+VFHVS
Sbjct: 786 DKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSM 845
Query: 895 LRKYVPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESL 954
LRKYVPDPSHV+ + +++ +NL+ PV + R VK LR K+IPLV+V+W E
Sbjct: 846 LRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARGVKTLRNKQIPLVKVLWRNHRVEEA 905
Query: 955 TWELESKMLESYPELF 970
TWE E M YPELF
Sbjct: 906 TWEREDDMRSRYPELF 921
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 389 bits (1000), Expect = e-106
Identities = 190/372 (51%), Positives = 267/372 (71%), Gaps = 1/372 (0%)
Query: 600 EVESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXX 658
+V+ EHQ G +++P WKW+ I+M + + + + I I+ R KSAHFL
Sbjct: 1224 QVKVEHQRPGGLAQNIELPEWKWEMINMDFITGLPRSRRQHDSIWVIVDRMTKSAHFLPV 1283
Query: 659 NISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQ 718
+ ++YI+EIV+ GVP SI+SDR +FT++FWKS Q+ LGSK+ LS+A+HPQ
Sbjct: 1284 KTTHSAEDYAKLYIQEIVRLHGVPISIISDRGAQFTAQFWKSFQKGLGSKVSLSTAFHPQ 1343
Query: 719 TDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCR 778
TDGQ+ERTIQ+LED+LR CV++ WD HLPLIEF YNNSYHSSI MAP+EALYGRRCR
Sbjct: 1344 TDGQAERTIQTLEDMLRACVIDFKSNWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCR 1403
Query: 779 TPLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVF 838
+P+ WFE GE ++GP++V Q EKV++IQE++K +QSRQKSY D RR+ LEF+ D V+
Sbjct: 1404 SPIGWFEVGEARLIGPDLVHQAMEKVKVIQERLKTAQSRQKSYTDVRRRALEFEVDDWVY 1463
Query: 839 LRVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKY 898
L+V+PM GV R K KL+P++IGPY+I++RVG+VAY + LP L+ +H VFH+S L+K
Sbjct: 1464 LKVSPMKGVMRFGKKGKLSPRYIGPYRIVQRVGSVAYELELPQELAAVHPVFHISMLKKC 1523
Query: 899 VPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWEL 958
+ DPS ++ ++ V+++DNL+ E +PV+I DR+V+ LR K++ V+V+W E TWE
Sbjct: 1524 IGDPSLILPTESVKIKDNLSYEEVPVQILDRQVRRLRTKDVASVKVLWRNQFVEEATWEA 1583
Query: 959 ESKMLESYPELF 970
E M + YP LF
Sbjct: 1584 EEDMKKRYPHLF 1595
>gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
Length = 552
Score = 384 bits (987), Expect = e-105
Identities = 190/372 (51%), Positives = 257/372 (69%), Gaps = 1/372 (0%)
Query: 600 EVESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXX 658
+V++EH+ G L++P WKW+ I+M + + + I ++ R KSAHF+
Sbjct: 174 QVKAEHKRPAGLLWPLEIPEWKWEHITMDFVIGLPRSPRGKDAIWVVVDRLTKSAHFIPV 233
Query: 659 NISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQ 718
+ +YIKE+V+ GVP SIVSDRD +F S W+SLQ A+G+K+ LS+A+HPQ
Sbjct: 234 RTTNTAHDLAPLYIKEVVRLHGVPKSIVSDRDSKFVSMLWQSLQRAMGTKISLSTAFHPQ 293
Query: 719 TDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCR 778
TDGQSERTIQ+LED+LR CVL G W+ HL L+EF YNNSY +SI MAPFEALYGR+C
Sbjct: 294 TDGQSERTIQTLEDMLRACVLSWKGNWEDHLALVEFAYNNSYQASIKMAPFEALYGRKCV 353
Query: 779 TPLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVF 838
+PLCW GER +LGPEIV+QT++KVQ I + M A+QSRQKSY D RR+DLEF GD V
Sbjct: 354 SPLCWESLGERALLGPEIVEQTSKKVQEIGQNMLAAQSRQKSYADTRRRDLEFAVGDQVL 413
Query: 839 LRVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKY 898
LRV+P G+ R + KL+P++IGP+ I RVG++AYR+ LP ++ +H+VFHVS LRKY
Sbjct: 414 LRVSPTKGIVRFGTTGKLSPRYIGPFVITARVGSLAYRLQLPESMNGVHDVFHVSMLRKY 473
Query: 899 VPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWEL 958
+ DP H I + + V +LT+E PVRI D +++R + I V+V+WT + TWEL
Sbjct: 474 LRDPEHKIDLEPIMVEQDLTIECRPVRIFDWSERVMRRRTIKYVKVLWTNQSEREATWEL 533
Query: 959 ESKMLESYPELF 970
E +M + YPELF
Sbjct: 534 EEEMKKKYPELF 545
>gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411368|pir||G84493 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1611
Score = 376 bits (966), Expect = e-102
Identities = 187/372 (50%), Positives = 253/372 (67%), Gaps = 2/372 (0%)
Query: 601 VESEHQNLLG*WVLLDVPXWKWDSISM--IL*RVAKYX*RDXRIGGILXR*RKSAHFLXX 658
V++EHQ G L +P WKWD I+M + + + ++ R KSAHF+
Sbjct: 1211 VKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAI 1270
Query: 659 NISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQ 718
+ E YI EIV+ G+P SIVSDRD RFTS+FWK+ Q+ALG+++ LS+AYHPQ
Sbjct: 1271 SDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQ 1330
Query: 719 TDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCR 778
TD QSERTIQ+LED+LR CVL+ GG W+ +L L+EF YNNS+ +SIGM+P+EALYGR CR
Sbjct: 1331 TDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACR 1390
Query: 779 TPLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVF 838
TPLCW GER + GP IV +TTE+++ ++ K+K +Q RQKSY +KRRK+LEFQ GD V+
Sbjct: 1391 TPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVY 1450
Query: 839 LRVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKY 898
L+ G R KKL+P+++GPY+++ERVG VAY++ LPP L+ HNVFHVSQLRK
Sbjct: 1451 LKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKC 1510
Query: 899 VPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWEL 958
+ D ++ +++N+TVE PVRI DR K RGK L++V+W E TWE
Sbjct: 1511 LSDQEESVEDIPPGLKENMTVEAWPVRIMDRMTKGTRGKARDLLKVLWNCRGREEYTWET 1570
Query: 959 ESKMLESYPELF 970
E+KM ++PE F
Sbjct: 1571 ENKMKANFPEWF 1582
>gb|AAT66771.1| putative polyprotein [Solanum demissum]
Length = 1769
Score = 376 bits (965), Expect = e-102
Identities = 189/376 (50%), Positives = 257/376 (68%), Gaps = 1/376 (0%)
Query: 596 LSLSEVESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAH 654
L +V++EH G + L +P WKW+ I+M + + + I I+ R KSAH
Sbjct: 1388 LCCQQVKAEHLRPGGEFQRLPIPEWKWERITMDFVVGLPRTSRGVDSIWVIVDRLTKSAH 1447
Query: 655 FLXXNISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSA 714
FL + +F + IYI+E+V+ GVP SI+SDR +FTS FW++ QE LG+++ LS++
Sbjct: 1448 FLPVHTTFSAERLARIYIREVVRLHGVPVSIISDRGSQFTSSFWRAFQEELGTRVHLSTS 1507
Query: 715 YHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYG 774
+HPQTDGQSERTIQ LED+LR CV++ GG W+ LPL EF YNNSYHSSI MAPFEALYG
Sbjct: 1508 FHPQTDGQSERTIQVLEDMLRACVMDFGGQWEQFLPLAEFAYNNSYHSSIQMAPFEALYG 1567
Query: 775 RRCRTPLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEG 834
RRCR+P+ WFES E G +++Q+ ++V++IQ++++ +QSR +SY D+RR+ L F G
Sbjct: 1568 RRCRSPVGWFESTEPRPRGTDLLQEALDQVRVIQDRLRTAQSRHQSYADQRRRPLRFSVG 1627
Query: 835 DHVFLRVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQ 894
D VFLRV+PM GV R + KL+P++IGP++IL VG VAY + LPP S +H VFHVS
Sbjct: 1628 DRVFLRVSPMKGVMRFGRRGKLSPRYIGPFEILRTVGEVAYELALPPVFSAIHPVFHVSM 1687
Query: 895 LRKYVPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESL 954
LR+YVPD SHV+Q D V++ D LT PV I R V+ LR + IP+V+V W E
Sbjct: 1688 LRRYVPDESHVLQYDAVELDDRLTFVEEPVAILARDVRRLRSRAIPVVKVRWRHRPVEEA 1747
Query: 955 TWELESKMLESYPELF 970
TWE E +M E +P LF
Sbjct: 1748 TWETEQEMREQFPSLF 1763
>emb|CAC44142.1| putative polyprotein [Cicer arietinum]
Length = 655
Score = 374 bits (960), Expect = e-102
Identities = 186/283 (65%), Positives = 223/283 (78%), Gaps = 1/283 (0%)
Query: 596 LSLSEVESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAH 654
L+ + + EHQ G LD+P WKWDSISM + + K ++ I I+ R KSAH
Sbjct: 372 LTCQKAKVEHQRPAGMLQPLDIPEWKWDSISMDFITGLPKTRRKNDSIWVIVDRLTKSAH 431
Query: 655 FLXXNISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSA 714
FL ++ V Q EIYI EIV+ GVPSSIVSDRDP+FTS FW +L EALG+KLRLSSA
Sbjct: 432 FLPVRTTYKVDQLTEIYIAEIVRLHGVPSSIVSDRDPKFTSHFWGALHEALGTKLRLSSA 491
Query: 715 YHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYG 774
YHPQTDGQ+ERT QSLEDLLR CVL+ G+WD LPLIEFTYNNS+H+SIGMAP++ALYG
Sbjct: 492 YHPQTDGQTERTNQSLEDLLRACVLDDRGSWDHVLPLIEFTYNNSFHTSIGMAPYQALYG 551
Query: 775 RRCRTPLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEG 834
R+C+TPLCW++ GE +++GPE+VQQTT KV+ I+EKMK SQ RQKSY DKRR+ LEF++G
Sbjct: 552 RKCQTPLCWYKDGENMIVGPEMVQQTTAKVKKIKEKMKTSQDRQKSYADKRRRLLEFEQG 611
Query: 835 DHVFLRVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRV 877
DHVFLRVTP TGV RALKSKKLTPKFIGPYQI R+G VAYR+
Sbjct: 612 DHVFLRVTPTTGVGRALKSKKLTPKFIGPYQIYARIGPVAYRI 654
>gb|AAV31169.1| putative polyprotein [Solanum tuberosum]
Length = 394
Score = 373 bits (958), Expect = e-101
Identities = 189/376 (50%), Positives = 257/376 (68%), Gaps = 1/376 (0%)
Query: 596 LSLSEVESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAH 654
L +V++EH G + L +P WKW+ I+M + + + I I+ R KSAH
Sbjct: 13 LCCQQVKAEHLRPGGEFQRLPIPEWKWERITMDFVVGLPRTSRGVDSIWVIVDRLTKSAH 72
Query: 655 FLXXNISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSA 714
FL + +F + IYI+E+V+ GVP SI+SDR +FTS F ++ QE LG+++ LS+A
Sbjct: 73 FLPVHTTFSAERLARIYIREVVRLHGVPVSIISDRGSQFTSSFLRAFQEELGTRVHLSTA 132
Query: 715 YHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYG 774
+HPQTDGQSERTIQ LED+LR CV++ GG WD LPL EF YNNSYHSSI MAPFEALYG
Sbjct: 133 FHPQTDGQSERTIQVLEDMLRACVMDFGGQWDQFLPLAEFAYNNSYHSSIQMAPFEALYG 192
Query: 775 RRCRTPLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEG 834
RRC +P+ WFES E + G +++Q+ ++V++IQ++++ +QSR +SY D+RR+ L F G
Sbjct: 193 RRCHSPVGWFESTEPRLRGTDLLQEALDQVRVIQDRLRTAQSRHQSYADQRRRPLRFSVG 252
Query: 835 DHVFLRVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQ 894
D VFLRV+PM GV R + KL+P++IGP++IL VG VAY + LPP S +H VFHVS
Sbjct: 253 DRVFLRVSPMKGVMRFGRRGKLSPRYIGPFEILRTVGEVAYELALPPVFSAIHPVFHVSM 312
Query: 895 LRKYVPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESL 954
LR+YVPD SHV+Q D V++ D LT PV I R V+ LR + IP+V+V W + E
Sbjct: 313 LRRYVPDESHVLQYDAVELDDRLTFVEEPVAILARDVRRLRSRAIPVVKVRWRHCSVEEA 372
Query: 955 TWELESKMLESYPELF 970
TWE E +M E +P LF
Sbjct: 373 TWETEQEMREQFPGLF 388
>gb|AAT39954.1| putative integrase [Solanum demissum]
Length = 1609
Score = 367 bits (941), Expect = 1e-99
Identities = 183/371 (49%), Positives = 251/371 (67%), Gaps = 1/371 (0%)
Query: 601 VESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXXN 659
V++EH L G + L +P WKW+ I+M + + + I I+ R KS+HFL
Sbjct: 1092 VKTEHLRLGGEFQRLPIPEWKWERITMDFIVGLPRTSRGVDNIWVIVDRLTKSSHFLHVQ 1151
Query: 660 ISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQT 719
SF + IYI+E+V+ GVP SI+SDR FTS FW++ Q+ LG+++ LS+ +HPQT
Sbjct: 1152 SSFSTERLARIYIREVVRLHGVPVSIISDRGSPFTSSFWRTFQDDLGTRVDLSTTFHPQT 1211
Query: 720 DGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRT 779
DGQSERTIQ LED+L+ CV++ GG WD LPL EF YNN+Y+SSI MAPFEALYGRRCR+
Sbjct: 1212 DGQSERTIQVLEDMLQACVMDFGGQWDQFLPLAEFAYNNNYYSSIQMAPFEALYGRRCRS 1271
Query: 780 PLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFL 839
P+ WFES E G +++Q+ ++V++IQ++++ +QSR ++Y D+RR+ L F GD VF
Sbjct: 1272 PVGWFESTEARPRGTDLLQEALDQVRVIQDRLRMAQSRHQNYADRRRRPLRFSVGDRVFF 1331
Query: 840 RVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 899
RV+PM GV R + KL+P++IGP++IL VG VAY + LPP S +H VFHV LR+YV
Sbjct: 1332 RVSPMKGVMRFGRRDKLSPRYIGPFEILRTVGEVAYELALPPAFSAIHPVFHVPMLRRYV 1391
Query: 900 PDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWELE 959
PD SHV+Q D V++ D LT P+ I R VK LR + IP+V+V W E TWE E
Sbjct: 1392 PDESHVLQYDAVELDDRLTFVEEPIAILARDVKRLRSRAIPVVKVHWRHRPVEEATWETE 1451
Query: 960 SKMLESYPELF 970
+M E +P LF
Sbjct: 1452 QEMREQFPVLF 1462
>emb|CAB46045.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268441|emb|CAB80961.1| retrotransposon like protein
[Arabidopsis thaliana] gi|25407549|pir||F85188
retrotransposon like protein [imported] - Arabidopsis
thaliana
Length = 687
Score = 365 bits (938), Expect = 3e-99
Identities = 181/371 (48%), Positives = 247/371 (65%), Gaps = 2/371 (0%)
Query: 602 ESEHQNLLG*WVLLDVPXWKWDSISM--IL*RVAKYX*RDXRIGGILXR*RKSAHFLXXN 659
+ EHQ G L +P WKWD I M + + + ++ R KSAHF+ +
Sbjct: 296 KEEHQVPSGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAIS 355
Query: 660 ISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQT 719
E YI EIV+ G+P SIVSDRD RFTS+FWK Q+ LG+++ LS+AYHPQT
Sbjct: 356 DKDAAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAYHPQT 415
Query: 720 DGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRT 779
DGQSERTIQ+LED+LR CVL+ GG W+ +L L+EF YNNS+ +SIGM+P+EALYGR RT
Sbjct: 416 DGQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRAGRT 475
Query: 780 PLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFL 839
PLCW GER + GP +V +TT+K++ ++ K+K +Q RQKSY +KRRK+LEFQ GD V+L
Sbjct: 476 PLCWTPVGERRLFGPAVVDETTKKMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYL 535
Query: 840 RVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 899
+ G R KKL P+++GPY+++ERVG VAY++ LPP L HNVFHVSQLRK +
Sbjct: 536 KAMTYKGAGRFTSRKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFHNVFHVSQLRKCL 595
Query: 900 PDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWELE 959
+ ++ +++N+TVE PVRI D+ K RGK + L++++W E TWE E
Sbjct: 596 SEQEESMEDVPPGLKENMTVEAWPVRIMDQMKKGTRGKSMDLLKILWNCGGREEYTWETE 655
Query: 960 SKMLESYPELF 970
+KM ++PE F
Sbjct: 656 TKMKANFPEWF 666
>gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa
(japonica cultivar-group)] gi|37533358|ref|NP_920981.1|
putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza
sativa (japonica cultivar-group)]
gi|21327374|gb|AAM48279.1| Putative 22 kDa kafirin
cluster; Ty3-Gypsy type [Oryza sativa (japonica
cultivar-group)] gi|18767374|gb|AAL79340.1| Putative 22
kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
Length = 1230
Score = 358 bits (919), Expect = 5e-97
Identities = 177/371 (47%), Positives = 251/371 (66%), Gaps = 1/371 (0%)
Query: 601 VESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXXN 659
V++EHQ G L +P WKW+ ISM + + + I I+ R KS HFL
Sbjct: 842 VKAEHQRPAGLLQPLSIPLWKWEEISMDFVQGLPTTPAGNDSIWVIVDRLTKSTHFLPVK 901
Query: 660 ISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQT 719
+F + + ++Y+KEIV GVP IVSDRD RF S+FWKSL A G+KL S+AYHPQT
Sbjct: 902 RNFSLKKLAKLYVKEIVSLHGVPVRIVSDRDTRFLSKFWKSLHRAPGTKLDFSTAYHPQT 961
Query: 720 DGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRT 779
DGQ+ER Q +ED+LR C+LE G+W+ +PL EF YNNSY SSI MAP+EALYGR+CRT
Sbjct: 962 DGQTERVNQIIEDMLRSCILEFKGSWEEFMPLAEFAYNNSYQSSIRMAPYEALYGRKCRT 1021
Query: 780 PLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFL 839
P+CW E GER +LGP+I+QQT E +++I+++++ +Q+RQKSY D RR+DL F GD V+L
Sbjct: 1022 PVCWNEVGERKLLGPDIIQQTKETIRLIRKRLQTAQNRQKSYVDNRRRDLRFDIGDWVYL 1081
Query: 840 RVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 899
+V+PM GV R KKL+P+++GP+ I++R+G VAY+V LP L +H+VFH+S +RK +
Sbjct: 1082 KVSPMKGVKRFGLGKKLSPRYVGPFAIVKRIGEVAYKVKLPDALIGVHDVFHISMIRKCL 1141
Query: 900 PDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWELE 959
PS ++ ++R++LT + PV I D K R + I ++V W+ T + TWE E
Sbjct: 1142 RRPSDQVEIPMAELRNDLTYQEYPVCILDTKDGKTRNRNIRFLKVQWSHHTQDEATWEKE 1201
Query: 960 SKMLESYPELF 970
+ ++YP+ F
Sbjct: 1202 DDLQKNYPQFF 1212
>gb|AAP52185.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531192|ref|NP_919898.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20177640|gb|AAM14695.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1680
Score = 357 bits (917), Expect = 8e-97
Identities = 177/372 (47%), Positives = 248/372 (66%), Gaps = 1/372 (0%)
Query: 601 VESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXXN 659
V++EHQ G L +P WKW+ I M + + K I I+ R K AHF+
Sbjct: 1298 VKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPKTSLGHDSIWVIVDRLTKVAHFIPVK 1357
Query: 660 ISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQT 719
++ S+ E+Y+ IV GVP IVSDR +FTS FWK LQE +GSKL S+AYHPQT
Sbjct: 1358 TTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQT 1417
Query: 720 DGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRT 779
DGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+EALYGR+CRT
Sbjct: 1418 DGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRT 1477
Query: 780 PLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFL 839
PL W ++GER V G +I+++ EKV++IQE+++ +QSR KSY D RR+DL F+EGD+V+L
Sbjct: 1478 PLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYL 1537
Query: 840 RVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 899
RVTP+ GV R KL P+F+GPY+I+ R G VAY++ LP L+ +HNVFHVSQL+K +
Sbjct: 1538 RVTPLRGVHRFHTKGKLVPRFVGPYKIVSRRGEVAYQLELPQSLAEVHNVFHVSQLKKCL 1597
Query: 900 PDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWELE 959
P+ + ++V+++LT P+RI + + R + I +V W+ + E TWE E
Sbjct: 1598 RVPTEEANLEQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWERE 1657
Query: 960 SKMLESYPELFA 971
++ ++P LFA
Sbjct: 1658 DELKSAHPYLFA 1669
>gb|AAP53015.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532852|ref|NP_920728.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22655733|gb|AAN04150.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|16905211|gb|AAL31081.1| putative polyprotein [Oryza
sativa]
Length = 1416
Score = 357 bits (916), Expect = 1e-96
Identities = 176/372 (47%), Positives = 247/372 (66%), Gaps = 1/372 (0%)
Query: 601 VESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXXN 659
V++EHQ G L +P WKW+ I M + + + I I+ R K AHF+
Sbjct: 1034 VKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVK 1093
Query: 660 ISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQT 719
++ S+ E+Y+ IV GVP IVSDR +FTS FWK LQE +GSKL S+AYHPQT
Sbjct: 1094 TTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQT 1153
Query: 720 DGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRT 779
DGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+EALYGR+CRT
Sbjct: 1154 DGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRT 1213
Query: 780 PLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFL 839
PL W ++GER V G +I+++ EKV++IQE+++ +QSR KSY D RR+DL F+EGD+V++
Sbjct: 1214 PLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYI 1273
Query: 840 RVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 899
RVTP GV R KL P+F+GPY+I+ R G VAY++ LP L+ +HNVFHVSQL+K +
Sbjct: 1274 RVTPFRGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCL 1333
Query: 900 PDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWELE 959
P+ D ++V+++LT P+RI + + R + I +V W+ + E TWE E
Sbjct: 1334 RVPTEEANLDQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWERE 1393
Query: 960 SKMLESYPELFA 971
++ ++P LFA
Sbjct: 1394 DELKSAHPHLFA 1405
>gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531994|ref|NP_920299.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22857578|gb|AAN09852.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1715
Score = 357 bits (916), Expect = 1e-96
Identities = 176/372 (47%), Positives = 248/372 (66%), Gaps = 1/372 (0%)
Query: 601 VESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXXN 659
V++EHQ G L +P WKW+ I M + + + I I+ R K AHF+
Sbjct: 1333 VKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVK 1392
Query: 660 ISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQT 719
++ S+ E+Y+ IV GVP IVSDR +FTS FWK LQE +GSKL S+AYHPQT
Sbjct: 1393 TTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQT 1452
Query: 720 DGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRT 779
DGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+EALYGR+CRT
Sbjct: 1453 DGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRT 1512
Query: 780 PLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFL 839
PL W ++GER V G +I+++ EKV++IQE+++ +QSR KSY D RR+DL F+EGD+V+L
Sbjct: 1513 PLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYL 1572
Query: 840 RVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 899
RVTP+ GV R KL P+F+GPY+I+ R G VAY++ LP L+ +HNVFHVSQL+K +
Sbjct: 1573 RVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCL 1632
Query: 900 PDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWELE 959
P+ + ++V+++LT P+RI + + R + I +V W+ + E TWE E
Sbjct: 1633 RVPTEEANIEQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWERE 1692
Query: 960 SKMLESYPELFA 971
++ ++P LFA
Sbjct: 1693 DELKSAHPHLFA 1704
>gb|AAP52169.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531160|ref|NP_919882.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22725919|gb|AAN04929.1| Putative polyprotein [Oryza
sativa] gi|20177624|gb|AAM14679.1| Putative polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1022
Score = 357 bits (916), Expect = 1e-96
Identities = 176/372 (47%), Positives = 249/372 (66%), Gaps = 1/372 (0%)
Query: 601 VESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXXN 659
V++EHQ G L +P WKW+ I M + + + I I+ R K AHF+
Sbjct: 640 VKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFILVK 699
Query: 660 ISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQT 719
++ S+ E+Y+ IV GVP IVSDR +FTS FWK LQE +GSKL S+AYHPQT
Sbjct: 700 TTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQT 759
Query: 720 DGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRT 779
DGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+EALYGR+CRT
Sbjct: 760 DGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRT 819
Query: 780 PLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFL 839
PL W ++GER V G +I+++ EKV++IQE+++ +QSR KSY D RR+DL F+EGD+V+L
Sbjct: 820 PLLWDQAGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYL 879
Query: 840 RVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 899
RVTP+ GV R + KL P+F+GPY+I+ R G VAY++ LP L+ +HNVFHVSQL+K +
Sbjct: 880 RVTPLRGVHRFHTNGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCL 939
Query: 900 PDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWELE 959
P+ + ++V+++LT P+RI + + R + I +V W+ + E TWE E
Sbjct: 940 RVPTEEANHEQIEVQEDLTYVEKPIRILEIDERRTRNRVIRFCKVQWSNHSEEESTWERE 999
Query: 960 SKMLESYPELFA 971
++ ++P LFA
Sbjct: 1000 DELKSAHPHLFA 1011
>emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa (japonica cultivar-group)]
gi|50930145|ref|XP_474600.1| OSJNBb0115I21.3 [Oryza
sativa (japonica cultivar-group)]
Length = 1779
Score = 357 bits (916), Expect = 1e-96
Identities = 176/372 (47%), Positives = 248/372 (66%), Gaps = 1/372 (0%)
Query: 601 VESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXXN 659
V++EHQ G L +P WKW+ I M + + + I I+ R K AHF+
Sbjct: 1397 VKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVK 1456
Query: 660 ISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQT 719
++ S+ E+Y+ IV GVP IVSDR +FTS FWK LQE +GSKL S+AYHPQT
Sbjct: 1457 TTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQT 1516
Query: 720 DGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRT 779
DGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+EALYGR+CRT
Sbjct: 1517 DGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRT 1576
Query: 780 PLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFL 839
PL W ++GER V G +I+++ EKV++IQE+++ +QSR KSY D RR+DL F+EGD+V+L
Sbjct: 1577 PLLWDQTGERQVFGTDILREAEEKVKVIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYL 1636
Query: 840 RVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 899
RVTP+ GV R KL P+F+GPY+I+ R G VAY++ LP L+ +HNVFHVSQL+K +
Sbjct: 1637 RVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCL 1696
Query: 900 PDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWELE 959
P+ + ++V+++LT P+RI + + R + I +V W+ + E TWE E
Sbjct: 1697 RVPTEEANIEQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWERE 1756
Query: 960 SKMLESYPELFA 971
++ ++P LFA
Sbjct: 1757 DELKSAHPHLFA 1768
>gb|AAV43973.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 846
Score = 357 bits (916), Expect = 1e-96
Identities = 176/372 (47%), Positives = 248/372 (66%), Gaps = 1/372 (0%)
Query: 601 VESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXXN 659
V++EHQ G L +P WKW+ I M + + + I I+ R K AHF+
Sbjct: 464 VKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVK 523
Query: 660 ISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQT 719
++ S+ E+Y+ IV GVP IVSDR +FTS FWK LQE +GSKL S+AYHPQT
Sbjct: 524 TTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQT 583
Query: 720 DGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRT 779
DGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+EALYGR+CRT
Sbjct: 584 DGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRT 643
Query: 780 PLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFL 839
PL W ++GER V G +I+++ EKV++IQE+++ +QSR KSY D RR+DL F+EGD+V+L
Sbjct: 644 PLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYL 703
Query: 840 RVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 899
RVTP+ GV R KL P+F+GPY+I+ R G VAY++ LP L+ +HNVFHVSQL+K +
Sbjct: 704 RVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCL 763
Query: 900 PDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWELE 959
P+ + ++V+++LT P+RI + + R + I +V W+ + E TWE E
Sbjct: 764 RVPTEEANLEQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWERE 823
Query: 960 SKMLESYPELFA 971
++ ++P LFA
Sbjct: 824 DELKSAHPHLFA 835
>gb|AAX94879.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 528
Score = 357 bits (916), Expect = 1e-96
Identities = 176/372 (47%), Positives = 248/372 (66%), Gaps = 1/372 (0%)
Query: 601 VESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXXN 659
V++EHQ G L +P WKW+ I M + + + I I+ R K AHF+
Sbjct: 146 VKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVK 205
Query: 660 ISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQT 719
++ S+ E+Y+ IV GVP IVSDR +FTS FWK LQE +GSKL S+AYHPQT
Sbjct: 206 TTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQT 265
Query: 720 DGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRT 779
DGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+EALYGR+CRT
Sbjct: 266 DGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRT 325
Query: 780 PLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFL 839
PL W ++GER V G +I+++ EKV++IQE+++ +QSR KSY D RR+DL F+EGD+V+L
Sbjct: 326 PLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYL 385
Query: 840 RVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 899
RVTP+ GV R KL P+F+GPY+I+ R G VAY++ LP L+ +HNVFHVSQL+K +
Sbjct: 386 RVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCL 445
Query: 900 PDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWELE 959
P+ + ++V+++LT P+RI + + R + I +V W+ + E TWE E
Sbjct: 446 RVPTEEANLEQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWERE 505
Query: 960 SKMLESYPELFA 971
++ ++P LFA
Sbjct: 506 DELKSAHPHLFA 517
>emb|CAE75877.1| B1234D02.1 [Oryza sativa (japonica cultivar-group)]
gi|38344464|emb|CAE04935.2| OSJNBa0017P10.12 [Oryza
sativa (japonica cultivar-group)]
gi|50921977|ref|XP_471349.1| OSJNBa0017P10.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1742
Score = 357 bits (915), Expect = 1e-96
Identities = 176/372 (47%), Positives = 247/372 (66%), Gaps = 1/372 (0%)
Query: 601 VESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXXN 659
V++EHQ G L +P WKW+ I M + + + I I+ R K AHF+
Sbjct: 1360 VKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVK 1419
Query: 660 ISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQT 719
++ S+ E+Y+ IV GVP IVSDR +FTS FWK LQE +GSKL S+AYHPQT
Sbjct: 1420 TTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQT 1479
Query: 720 DGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRT 779
DGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+EALYGR+CRT
Sbjct: 1480 DGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRT 1539
Query: 780 PLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFL 839
PL W ++GER V G +I+++ EKV++IQE+++ +QSR KSY D RR+DL F+EGD+V+L
Sbjct: 1540 PLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYL 1599
Query: 840 RVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 899
RVTP GV R KL P+F+GPY+I+ R G VAY++ LP L+ +HNVFH+SQL+K +
Sbjct: 1600 RVTPFRGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHLSQLKKCL 1659
Query: 900 PDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWELE 959
P+ D ++V+++LT P+RI + + R + I +V W+ + E TWE E
Sbjct: 1660 RVPTEEANLDQIEVQEDLTYVEKPIRILESNERRTRNRVIRFCKVQWSNHSEEESTWERE 1719
Query: 960 SKMLESYPELFA 971
++ ++P LFA
Sbjct: 1720 DELKSAHPHLFA 1731
>ref|XP_472517.1| OSJNBa0011E07.12 [Oryza sativa (japonica cultivar-group)]
gi|38346366|emb|CAE04203.2| OSJNBa0011E07.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1473
Score = 357 bits (915), Expect = 1e-96
Identities = 176/372 (47%), Positives = 248/372 (66%), Gaps = 1/372 (0%)
Query: 601 VESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXXN 659
V++EHQ G L +P WKW+ I M + + + I I+ R K AHF+
Sbjct: 1091 VKAEHQKPAGLLQPLKIPEWKWEEIGMDFITSLPRTSSGHDSIWVIVDRLTKVAHFIPVK 1150
Query: 660 ISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQT 719
++ S+ E+Y+ IV GVP IVSDR +FTS FWK LQE +GSKL S+AYHPQT
Sbjct: 1151 TTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQT 1210
Query: 720 DGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRT 779
DGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+EALYGR+CRT
Sbjct: 1211 DGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRT 1270
Query: 780 PLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFL 839
PL W ++GER V G +I+++ EKV++IQE+++ +QSR KSY D RR+DL F+EGD+V+L
Sbjct: 1271 PLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYL 1330
Query: 840 RVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 899
RVTP+ GV R KL P+F+GPY+I+ R G VAY++ LP L+ +HNVFHVSQL+K +
Sbjct: 1331 RVTPLRGVRRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCL 1390
Query: 900 PDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWELE 959
P+ + ++V+++LT P+RI + + R + I +V W+ + E TWE E
Sbjct: 1391 RVPTEEANIEQIEVQEDLTYVEKPIRILEINERRTRNRVIRFCKVQWSNHSEEESTWERE 1450
Query: 960 SKMLESYPELFA 971
++ ++P LFA
Sbjct: 1451 DELKSAHPHLFA 1462
>ref|XP_471545.1| OSJNBa0019J05.6 [Oryza sativa (japonica cultivar-group)]
gi|38346421|emb|CAD40208.2| OSJNBa0019J05.6 [Oryza sativa
(japonica cultivar-group)]
Length = 1616
Score = 356 bits (914), Expect = 2e-96
Identities = 176/372 (47%), Positives = 247/372 (66%), Gaps = 1/372 (0%)
Query: 601 VESEHQNLLG*WVLLDVPXWKWDSISM-IL*RVAKYX*RDXRIGGILXR*RKSAHFLXXN 659
V++EHQ G L +P WKW+ I M + + + I I+ R K AHF+
Sbjct: 1234 VKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVK 1293
Query: 660 ISFPVSQXXEIYIKEIVKCMGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQT 719
++ S+ E+Y+ IV GVP IVSDR +FTS FWK LQE +GSKL S+AYHPQT
Sbjct: 1294 TTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQT 1353
Query: 720 DGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRT 779
DGQ+ER Q LED+LR C L+ GG+WD +LP EF+YNNSY +S+ MAP+EALYGR+CRT
Sbjct: 1354 DGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRT 1413
Query: 780 PLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFL 839
PL W ++GER V G +I+++ EKV++IQE+++ +QSR KSY D RR+DL F+EGD+V+L
Sbjct: 1414 PLLWDQTGERQVFGTDILREAEEKVKVIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYL 1473
Query: 840 RVTPMTGVXRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYV 899
RVTP+ GV R KL P+F+GPY+I R G VAY++ LP L+ +HNVFHVSQL+K +
Sbjct: 1474 RVTPLRGVHRFHTKGKLAPRFVGPYKIASRRGEVAYQLELPQSLAGVHNVFHVSQLKKCL 1533
Query: 900 PDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKMLRGKEIPLVRVVWTGATSESLTWELE 959
P+ + ++V+++LT P+RI + + R + I +V W+ + E TWE E
Sbjct: 1534 RVPTEEANIEQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWERE 1593
Query: 960 SKMLESYPELFA 971
++ ++P LFA
Sbjct: 1594 DELKSAHPHLFA 1605
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.350 0.155 0.524
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,291,753,695
Number of Sequences: 2540612
Number of extensions: 45543266
Number of successful extensions: 175418
Number of sequences better than 10.0: 1677
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 171740
Number of HSP's gapped (non-prelim): 2104
length of query: 971
length of database: 863,360,394
effective HSP length: 138
effective length of query: 833
effective length of database: 512,755,938
effective search space: 427125696354
effective search space used: 427125696354
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 80 (35.4 bits)
Medicago: description of AC147714.2