BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147714.1 - phase: 0 /pseudo
(805 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_908336.1| putative polyprotein [Oryza sativa (japonica cu... 350 1e-94
ref|XP_475471.1| putative polyprotein [Oryza sativa (japonica cu... 348 4e-94
ref|XP_463281.1| putative polyprotein [Oryza sativa (japonica cu... 348 5e-94
ref|XP_493959.1| Similar to Sorghum bicolor 22 kDa kafirin clust... 347 7e-94
ref|XP_474155.1| OSJNBa0060D06.14 [Oryza sativa (japonica cultiv... 346 2e-93
gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cult... 346 2e-93
emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar... 344 8e-93
gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cul... 341 5e-92
gb|AAP52680.1| putative polyprotein [Oryza sativa (japonica cult... 341 5e-92
gb|AAP52470.1| putative polyprotein [Oryza sativa (japonica cult... 341 5e-92
gb|AAD27547.1| polyprotein [Oryza sativa subsp. indica] 340 8e-92
gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-... 340 1e-91
ref|NP_914275.1| putative polyprotein [Oryza sativa (japonica cu... 340 1e-91
gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cult... 340 1e-91
ref|NP_908773.1| putative polyprotein [Oryza sativa (japonica cu... 340 1e-91
gb|AAP52880.1| putative retroelement [Oryza sativa (japonica cul... 339 2e-91
ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultiva... 339 2e-91
ref|XP_471257.1| OSJNBa0056L23.17 [Oryza sativa (japonica cultiv... 339 2e-91
gb|AAM74400.1| Putative retroelement [Oryza sativa (japonica cul... 339 2e-91
emb|CAD40170.2| OSJNBa0061A09.9 [Oryza sativa (japonica cultivar... 339 2e-91
>ref|NP_908336.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|52353682|gb|AAU44248.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|52353613|gb|AAU44179.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20804440|dbj|BAB92137.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|15128451|dbj|BAB62635.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1524
Score = 350 bits (897), Expect = 1e-94
Identities = 229/641 (35%), Positives = 331/641 (50%), Gaps = 61/641 (9%)
Query: 191 QAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQY 250
Q QA QQ N+ G+ L F++ PPTF +P A WL IE+ ++Q
Sbjct: 70 QVQQQAQLQQQNLQFGSPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQC 129
Query: 251 TEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIE 310
E++KV F THQL A WW + T GA +TW FR F + E + +K+ E
Sbjct: 130 NEQEKVAFATHQLQGPASIWWDNYMVT-RPAGAEVTWTEFRHSFNKAQVPEGIVAQKKRE 188
Query: 311 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRV 370
F L+QG +V EY +F L+++ P +AE R KF +GL ++ + +
Sbjct: 189 FRSLQQGTRTVIEYLHEFNLLARYAPEDVRTDAE--RQEKFLSGLDDELTNQLISRDYED 246
Query: 371 FQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRP-----KPYSAPADKGKQKMVDVR--R 423
F+ LV+ EE H +N ++ Q P KP G + +R R
Sbjct: 247 FEKLVDKAIRQEE----HCNKINRKRKAAQFRTPQGKSQKPRFTMGRHGGPSTMIIRQHR 302
Query: 424 PKKKDAAEIVCFNCGEKG---HKSNACPEEIK------------KCVRCGKKGHVVADCN 468
P + N H N P +K + R G+K
Sbjct: 303 PYHPGSFNKNHHNGSHNNSEQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPE------ 356
Query: 469 RTDIVCFNCNGEGHISSQCTQPKRAP---TTGRVFALTGTQTENEDRLIRGTCYINNTPL 525
+CFNCN GH +C +P+RA RV + + ++ +I GT +N+TP
Sbjct: 357 ----LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPA 412
Query: 526 VAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDF 585
V + D+GATH FI+ A GL L + M V TP G +TT+ C + + G F
Sbjct: 413 VILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIF 471
Query: 586 EMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERD 645
+L+ L +DVILGM+WL + +I+C S+++ ++ + E + T Q +
Sbjct: 472 PANLILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSLVPRKP 526
Query: 646 GILMFSLMATLSIENQAVIDR-------LPVVCDFPEVFPDEIPDVPPEREVEFSIDLVP 698
GI SL E + +++ +P+V ++PEVFPD++ +PP+R++EF IDLVP
Sbjct: 527 GI---SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVP 583
Query: 699 GTKPVSMAPYRISASEL---KKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDY 755
GT P+ PYR+ ASEL KKQ+++ L+K ++RPS SPWGA V+ V+KKD + R+C+DY
Sbjct: 584 GTAPIHKRPYRMGASELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDY 643
Query: 756 RQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
R LN+VTIKN+YPLPRIDDL DQL GA VFSKIDLRSGYHQ
Sbjct: 644 RALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQ 684
Score = 96.3 bits (238), Expect = 4e-18
Identities = 54/147 (36%), Positives = 78/147 (52%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL IE+ ++QC E++KV F THQL A WW +
Sbjct: 96 FLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASIWWDNYMV 155
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T GA VTW FR F + PE + +K+ EF L+QG +V EY +F L+++ P
Sbjct: 156 T-RPAGAEVTWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNLLARYAP 214
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE R K +GL ++ +L
Sbjct: 215 EDVRTDAE--RQEKFLSGLDDELTNQL 239
>ref|XP_475471.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50080316|gb|AAT69650.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1458
Score = 348 bits (893), Expect = 4e-94
Identities = 228/641 (35%), Positives = 330/641 (50%), Gaps = 61/641 (9%)
Query: 191 QAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQY 250
Q QA QQ N+ G+ L F++ PPTF +P A WL IE+ ++Q
Sbjct: 70 QVQQQAQLQQQNLQFGSPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQC 129
Query: 251 TEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIE 310
E++KV F THQL A WW + T GA +TW FR F + E + +K+ E
Sbjct: 130 NEQEKVAFATHQLQGPASIWWDNYMVT-RPAGAEVTWTEFRHSFNKAQVPEGIVAQKKRE 188
Query: 311 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRV 370
F L+QG +V EY +F L+++ P +AE R KF +GL ++ + +
Sbjct: 189 FRSLQQGTRTVIEYLHEFNLLARYAPEDVRTDAE--RQEKFLSGLDDELTNQLISRDYED 246
Query: 371 FQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRP-----KPYSAPADKGKQKMVDVR--R 423
F+ LV+ EE H +N ++ Q P KP G + +R R
Sbjct: 247 FEKLVDKAIRQEE----HCNKINRKRKAAQFRTPQGKSQKPRFTMGRHGGPSTMIIRQHR 302
Query: 424 PKKKDAAEIVCFNCGEKG---HKSNACPEEIK------------KCVRCGKKGHVVADCN 468
P + N H N P +K + R G+K
Sbjct: 303 PYHPGSFNKNHHNGSHNNSEQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPE------ 356
Query: 469 RTDIVCFNCNGEGHISSQCTQPKRAP---TTGRVFALTGTQTENEDRLIRGTCYINNTPL 525
+CFNCN GH +C +P+RA RV + + ++ +I GT +N+TP
Sbjct: 357 ----LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPA 412
Query: 526 VAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDF 585
V + D+GATH FI+ A GL L + M V TP G +TT+ C + + G F
Sbjct: 413 VILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIF 471
Query: 586 EMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERD 645
+L+ L +DVILGM+WL + +I+C S+++ ++ + E + T Q +
Sbjct: 472 PANLILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSLVPRKP 526
Query: 646 GILMFSLMATLSIENQAVIDR-------LPVVCDFPEVFPDEIPDVPPEREVEFSIDLVP 698
GI SL E + +++ +P+V ++PEVFPD++ +PP+R++EF IDLVP
Sbjct: 527 GI---SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVP 583
Query: 699 GTKPVSMAPYRISASEL---KKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDY 755
GT P+ PYR+ ASEL KKQ+++ L+K ++RPS SPWGA V+ V+KKD + R+C+DY
Sbjct: 584 GTAPIHKRPYRMGASELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDY 643
Query: 756 RQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
R LN+VTIKN+YPLPRIDDL DQL G VFSKIDLRSGYHQ
Sbjct: 644 RALNEVTIKNKYPLPRIDDLFDQLKGVTVFSKIDLRSGYHQ 684
Score = 96.3 bits (238), Expect = 4e-18
Identities = 54/147 (36%), Positives = 78/147 (52%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL IE+ ++QC E++KV F THQL A WW +
Sbjct: 96 FLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASIWWDNYMV 155
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T GA VTW FR F + PE + +K+ EF L+QG +V EY +F L+++ P
Sbjct: 156 T-RPAGAEVTWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNLLARYAP 214
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE R K +GL ++ +L
Sbjct: 215 EDVRTDAE--RQEKFLSGLDDELTNQL 239
>ref|XP_463281.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1455
Score = 348 bits (892), Expect = 5e-94
Identities = 226/641 (35%), Positives = 332/641 (51%), Gaps = 61/641 (9%)
Query: 191 QAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQY 250
Q QA QQ N+ G L F++ PPTF +P A WL IE+ ++Q
Sbjct: 70 QVQQQAQQQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHTIEKKLNLLQC 129
Query: 251 TEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIE 310
E++KV F THQL A WW + T GA +TW F F + E + +K+ E
Sbjct: 130 NEQEKVAFATHQLQGPASIWWDNYMVT-RPTGAEVTWTEFCHSFNKAQVPEGIVAQKKRE 188
Query: 311 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRV 370
F L+QG +V EY +F L+++ P +AE R KF +GL ++ + +
Sbjct: 189 FRSLQQGTRTVIEYLHEFNRLARYAPEDVRTDAE--RQEKFLSGLDDELINQLISRDYED 246
Query: 371 FQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRP-----KPYSAPADKGKQKMVDVRR-- 423
F+ LV+ EE H VN ++ Q P KP S G + +R+
Sbjct: 247 FEKLVDKAIRQEE----HCNKVNRKRKAAQFRTPQGKSQKPRSTMGHHGGPSAMIIRQYR 302
Query: 424 ---PKKKDAAEIVCFNCGEKGHKSNACPEEIK------------KCVRCGKKGHVVADCN 468
P + + + H N P +K + R G+K
Sbjct: 303 PYHPGSFNKNHHSGSHNNSEQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPE------ 356
Query: 469 RTDIVCFNCNGEGHISSQCTQPKRAP---TTGRVFALTGTQTENEDRLIRGTCYINNTPL 525
+CFNCN GH +C++P+RA RV + + ++ +I GT +N+TP
Sbjct: 357 ----LCFNCNKPGHTVGKCSKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPA 412
Query: 526 VAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDF 585
V + D+GATH FI+ A GL L + M V TP G +TT+ C + + G F
Sbjct: 413 VILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIF 471
Query: 586 EMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERD 645
+L+ L +DVILGM+WL + +I+C S+++ ++ + E + T Q ++
Sbjct: 472 PANLILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSPVPQKP 526
Query: 646 GILMFSLMATLSIENQAVIDR-------LPVVCDFPEVFPDEIPDVPPEREVEFSIDLVP 698
I SL E + +++ +P+V ++PEVFPD++ +PP+R++EF IDLVP
Sbjct: 527 RI---SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVP 583
Query: 699 GTKPVSMAPYRISASEL---KKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDY 755
GT P+ PYR+ A+EL KKQ+++ L+K ++RPS SPWGA V+ V+KKD + R+C+DY
Sbjct: 584 GTAPIHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDY 643
Query: 756 RQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
R LN+VTIKN+YPLPRIDDL DQL GA VFSKIDLRSGYHQ
Sbjct: 644 RALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQ 684
Score = 93.6 bits (231), Expect = 2e-17
Identities = 53/147 (36%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL IE+ ++QC E++KV F THQL A WW +
Sbjct: 96 FLRVKPPTFSSTTNPIEAHDWLHTIEKKLNLLQCNEQEKVAFATHQLQGPASIWWDNYMV 155
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T GA VTW F F + PE + +K+ EF L+QG +V EY +F L+++ P
Sbjct: 156 T-RPTGAEVTWTEFCHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNRLARYAP 214
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE R K +GL ++ +L
Sbjct: 215 EDVRTDAE--RQEKFLSGLDDELINQL 239
>ref|XP_493959.1| Similar to Sorghum bicolor 22 kDa kafirin cluster; polyprotein.
(AF061282) [Oryza sativa (japonica cultivar-group)]
Length = 1524
Score = 347 bits (891), Expect = 7e-94
Identities = 224/641 (34%), Positives = 329/641 (50%), Gaps = 61/641 (9%)
Query: 191 QAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQY 250
Q QA QQ N+ G L F++ PPTF +P A WL IE+ ++Q
Sbjct: 70 QVQRQAQQQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQC 129
Query: 251 TEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIE 310
E++KV F THQL A WW + T GA +TW FR F + E + +K+ E
Sbjct: 130 NEQEKVAFATHQLQGPASVWWDNYMVT-RPAGAEVTWTEFRHSFNKAQVPEGIVAQKKRE 188
Query: 311 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRV 370
F L+QG +V EY +F L+++ P +AE KF +GL ++ + +
Sbjct: 189 FRSLQQGTRTVIEYLHEFNLLARYAPEDVRTDAEKQE--KFMSGLDDELTNQLISRDYED 246
Query: 371 FQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRP-----KPYSAPADKGKQKMVDVRR-- 423
F+ LV+ EE H +N ++ Q P KP G + +R+
Sbjct: 247 FEKLVDKAIRQEE----HCNKINRKRKAAQFRTPQGKSQKPRFTMGHHGGPSTMIIRQHR 302
Query: 424 ---PKKKDAAEIVCFNCGEKGHKSNACPEEIK------------KCVRCGKKGHVVADCN 468
P + + + H N P +K + R G+K
Sbjct: 303 PYHPGNFNKNHHNGSHNNSEQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPE------ 356
Query: 469 RTDIVCFNCNGEGHISSQCTQPKRAP---TTGRVFALTGTQTENEDRLIRGTCYINNTPL 525
+CFNCN GH +C +P+RA RV + + ++ +I GT +N+TP
Sbjct: 357 ----LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPA 412
Query: 526 VAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDF 585
V + D+GATH FI+ A GL L + M V TP G +TT+ C + + G F
Sbjct: 413 VILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIF 471
Query: 586 EMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERD 645
+L+ L +DVILGM+WL + +I+C S+++ ++ + E T Q +
Sbjct: 472 PANLILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGEE-----VTFQSLVPRKP 526
Query: 646 GILMFSLMATLSIENQAVIDR-------LPVVCDFPEVFPDEIPDVPPEREVEFSIDLVP 698
G+ SL E + +++ +P+V ++PEVFPD++ +PP+R++EF IDLVP
Sbjct: 527 GV---SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVP 583
Query: 699 GTKPVSMAPYRISASEL---KKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDY 755
GT P+ PYR+ A+EL KKQ+++ L+K ++RPS SPWGA V+ V+KKD + R+C+DY
Sbjct: 584 GTAPIHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDY 643
Query: 756 RQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
R LN+VTIKN+YPLPRIDDL DQL GA VFSKIDLRSGYHQ
Sbjct: 644 RALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQ 684
Score = 96.3 bits (238), Expect = 4e-18
Identities = 53/147 (36%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL IE+ ++QC E++KV F THQL A WW +
Sbjct: 96 FLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASVWWDNYMV 155
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T GA VTW FR F + PE + +K+ EF L+QG +V EY +F L+++ P
Sbjct: 156 T-RPAGAEVTWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNLLARYAP 214
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE K +GL ++ +L
Sbjct: 215 EDVRTDAEKQE--KFMSGLDDELTNQL 239
>ref|XP_474155.1| OSJNBa0060D06.14 [Oryza sativa (japonica cultivar-group)]
gi|38345904|emb|CAE03548.2| OSJNBa0060D06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1458
Score = 346 bits (888), Expect = 2e-93
Identities = 227/642 (35%), Positives = 328/642 (50%), Gaps = 63/642 (9%)
Query: 191 QAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQY 250
Q QA QQ N+ G L F++ PPTF +P A WL IE+ ++QY
Sbjct: 70 QVQQQAQLQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQY 129
Query: 251 TEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIE 310
E++KV F THQL A WW + T GA +TW F F + E + +K+ E
Sbjct: 130 NEQEKVAFATHQLQGPASIWWDNYMVTR-PTGAEVTWTEFCHSFNKAQVPEGIVAQKKRE 188
Query: 311 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRV 370
F L+QG +V EY +F L+ + P +AE R KF +GL ++ + +
Sbjct: 189 FRSLQQGTRTVIEYLHEFNRLAHYAPEDVRTDAE--RQEKFLSGLDDELTNQLVSRDYED 246
Query: 371 FQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRP------KPYSAPADKGKQKMVDVRR- 423
F+ LV+ EE RK K Q R KP G + +R+
Sbjct: 247 FEKLVDKAIRQEEQCNKM-----NRKRKAAQFRTPQGKCQKPRFTMGHHGGPSTMIIRQH 301
Query: 424 ----PKKKDAAEIVCFNCGEKGHKSNACPEEIK------------KCVRCGKKGHVVADC 467
P + + K H N P +K + R G+K +
Sbjct: 302 RPYHPGNFNKNHHSDSHNNSKQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPEL---- 357
Query: 468 NRTDIVCFNCNGEGHISSQCTQPKRAP---TTGRVFALTGTQTENEDRLIRGTCYINNTP 524
CFNCN GH +C +P+RA RV + + ++ +I GT +N+TP
Sbjct: 358 ------CFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTP 411
Query: 525 LVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRD 584
V + D+GATH FI+ A GL L + M V TP G +TT+ C + + G
Sbjct: 412 AVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLI 470
Query: 585 FEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLER 644
F +L+ L +DVILGM+WL + +I+C S+++ ++ + E + Q ++
Sbjct: 471 FPANLILLESKDLDVILGMDWLARHRGVIDCASRTIKLTNAKGE-----VVIFQSPVPQK 525
Query: 645 DGILMFSLMATLSIENQAVIDR-------LPVVCDFPEVFPDEIPDVPPEREVEFSIDLV 697
GI SL E + +++ +P+V ++PEVFPD++ +PP+R++EF IDLV
Sbjct: 526 PGI---SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLV 582
Query: 698 PGTKPVSMAPYRISASEL---KKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCID 754
PGT P+ PYR+ A+EL KKQ+++ L+K ++RPS SPWGA V+ V+KKD + R+C+D
Sbjct: 583 PGTAPIHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVD 642
Query: 755 YRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
YR LN+VTIKN+YPLPRIDDL DQL GA VFSKIDLRSGYHQ
Sbjct: 643 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQ 684
Score = 89.0 bits (219), Expect = 6e-16
Identities = 52/147 (35%), Positives = 75/147 (50%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL IE+ ++Q E++KV F THQL A WW +
Sbjct: 96 FLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQYNEQEKVAFATHQLQGPASIWWDNYMV 155
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T GA VTW F F + PE + +K+ EF L+QG +V EY +F L+ + P
Sbjct: 156 T-RPTGAEVTWTEFCHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNRLAHYAP 214
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE R K +GL ++ +L
Sbjct: 215 EDVRTDAE--RQEKFLSGLDDELTNQL 239
>gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1717
Score = 346 bits (887), Expect = 2e-93
Identities = 217/630 (34%), Positives = 327/630 (51%), Gaps = 54/630 (8%)
Query: 193 VAQAVGQQPNVNAGANAEA---RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQ 249
V QA QQ N N N L F++ PPTF +P A WL +E+ ++Q
Sbjct: 300 VQQAQNQQAN-NQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQ 358
Query: 250 YTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEI 309
TE++KV F +HQL A +WW EG +TW F F + + V K+
Sbjct: 359 CTEQEKVSFASHQLHGPAAEWWDHFRQGRA-EGEPITWQEFTAAFRKTHIPSGVVALKKR 417
Query: 310 EFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLR 369
EF L QG+ SVTEY F L+++ P + E R KF GL ++ A+ R
Sbjct: 418 EFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEE--RQEKFLEGLNDELSYALMSTDFR 475
Query: 370 VFQDLVNSCRIYEEDTKAHYKVVNERKGK-----GQQSRPKPYSAPADKGKQK--MVDVR 422
FQ LV+ I +ED + R + G RP+ + P + V
Sbjct: 476 DFQQLVDKA-IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVTGPQVPSYPQGGSSSVV 534
Query: 423 RPKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVA-DCNRTDIVCFNCNGEG 481
RP+++ F ++ N + + + V + ++CFNC G
Sbjct: 535 RPQRQ-------FYNNNTSNRGNDNRNVVARPAATSAQNQPVRKEQGSKPVICFNCGDPG 587
Query: 482 HISSQCTQPKR-----APTTGRVFA-------LTGTQTENEDRLIRGTCYINNTPLVAII 529
H + +C +P+R AP V A + + +N ++ GT +N+ P +
Sbjct: 588 HYADKCPKPRRVKNAPAPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLF 647
Query: 530 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDL 589
D+GATH F++ S G+++ + ++V TP V ++ C + + F L
Sbjct: 648 DSGATHSFLSKSFTSNHGMEVISLERPLLVNTPGN-QVFSTQYCPSATIEIEEVPFPSSL 706
Query: 590 VCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILM 649
+ L +DVILGM+WL + +I+C ++ V +S E+ + F+S+ + G+++
Sbjct: 707 ILLESKDLDVILGMDWLSCHRGVIDCANRKVTLTSSNGETVSFFMSSPK-----SHGVIL 761
Query: 650 FSLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYR 709
NQ + +P+V D+P+VFP+++P +PP+RE+EF IDLVPGT P+ PYR
Sbjct: 762 ----------NQVALQEIPIVQDYPDVFPEDLPGMPPKREIEFRIDLVPGTNPIHKRPYR 811
Query: 710 ISASEL---KKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNR 766
++A+EL K+Q+EDLL+K ++RPS SPWGA V+ V+KKD + R+C+DYR LN+VTIKN+
Sbjct: 812 MAANELVEVKRQVEDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNK 871
Query: 767 YPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
YPLPRIDDL DQL GA VFSKIDLRSGYHQ
Sbjct: 872 YPLPRIDDLFDQLEGATVFSKIDLRSGYHQ 901
Score = 90.1 bits (222), Expect = 3e-16
Identities = 54/157 (34%), Positives = 79/157 (49%), Gaps = 5/157 (3%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL +E+ ++QCTE++KV F +HQL A +WW
Sbjct: 326 FLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQ 385
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
EG +TW F F + + P V K+ EF L QG+ SVTEY F L+++ P
Sbjct: 386 GRA-EGEPITWQEFTAAFRKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP 444
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRLDTTTESFQDW 158
+ E R K GL ++ L +T F+D+
Sbjct: 445 EDVRTDEE--RQEKFLEGLNDELSYALMST--DFRDF 477
>emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar-group)]
gi|50922727|ref|XP_471724.1| OSJNBa0023J03.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1827
Score = 344 bits (882), Expect = 8e-93
Identities = 212/617 (34%), Positives = 325/617 (52%), Gaps = 31/617 (5%)
Query: 199 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 258
+Q + G L F++ PPTF +P A WL IE+ ++Q +++KV F
Sbjct: 383 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF 442
Query: 259 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 318
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 443 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 501
Query: 319 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 378
M+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 502 MTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 559
Query: 379 RIYEEDTKAHY----KVVNERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 434
I +ED + K R +G Q RP+ P +G + VR+ + +++
Sbjct: 560 -IRQEDQRNKMDRKRKAAQFRSNQGSQHRPR--FTPGQQGGPTTMIVRQHRPFNSSNFHQ 616
Query: 435 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 489
G + H+ A P + + + CFNC GH + +C +
Sbjct: 617 GTSGSQNHQGGQPNRGAAPRPPMAPAQSAQPAQAKKETGAKPGSCFNCGELGHFADKCPK 676
Query: 490 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 546
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 677 PRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMY 736
Query: 547 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 606
GL +++ M V TP S + S + + F +L+ L +DVILGM+WL
Sbjct: 737 GLRKDELSTPMRVRTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 795
Query: 607 EYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMFSLMATLSIE----NQA 662
+I+C S++V ++ + E+ + S KQ G+ + + + ++ N
Sbjct: 796 TKFKGVIDCASRTVTLTNEKGET-VVYKSPDSPKQ----GVSLNQIETEIPVDTVGKNLR 850
Query: 663 VIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KKQL 719
++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KKQ+
Sbjct: 851 KLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQV 910
Query: 720 EDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQL 779
++ L+K ++RPS SPWGA V+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL
Sbjct: 911 DEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQL 970
Query: 780 VGARVFSKIDLRSGYHQ 796
GA+VFSKIDLRSGYHQ
Sbjct: 971 KGAKVFSKIDLRSGYHQ 987
Score = 99.4 bits (246), Expect = 4e-19
Identities = 55/147 (37%), Positives = 78/147 (52%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL IE+ ++QC +++KV F THQL A WW +
Sbjct: 401 FLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMA 460
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T G VTWA F R F + P+ V +K+ EF L QGNM+VTEY +F L+++ P
Sbjct: 461 T-RPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNMTVTEYLHEFNRLARYAP 519
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE K GL ++ +L
Sbjct: 520 EDVRTDAEKQE--KFMAGLDDELTNQL 544
>gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531686|ref|NP_920145.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671935|gb|AAM74297.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 974
Score = 341 bits (875), Expect = 5e-92
Identities = 215/632 (34%), Positives = 324/632 (51%), Gaps = 58/632 (9%)
Query: 193 VAQAVGQQPNVNAGANAEA---RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQ 249
V QA QQ N N N L F++ PPTF +P A WL +E+ ++Q
Sbjct: 40 VQQAQNQQAN-NQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQ 98
Query: 250 YTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEI 309
TE++KV F +HQL A +WW G +TW F F + + V K+
Sbjct: 99 CTEQEKVSFASHQLHGPAAEWWDHFRQGRAG-GEPITWQEFTAAFKKTHIPSGVVALKKR 157
Query: 310 EFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLR 369
EF L QG+ SVTEY F L+++ P + E R KF GL ++ A+ R
Sbjct: 158 EFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEE--RQEKFLEGLNDELSYALMATDFR 215
Query: 370 VFQDLVNSCRIYEEDTKAHYKVVNERKGK--------GQQSRPKPYSAPADKGKQK--MV 419
FQ LV+ I +ED Y + ++K + G RP+ + P +
Sbjct: 216 DFQQLVDKA-IRQEDK---YNRIEQKKRRAAQFKAQQGSNQRPRLITGPQAPSYPQGGSS 271
Query: 420 DVRRPKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNG 479
V RP+++ N G ACP + V + ++CFNC
Sbjct: 272 SVARPQRQFYNNNTS-NRGNDNRNMVACPAATPV-----QNQPVRKEQGSKPVICFNCGD 325
Query: 480 EGHISSQCTQPKRAPTT------------GRVFALTGTQTENEDRLIRGTCYINNTPLVA 527
GH + +C +P+R RV + + +N ++ GT +N+ P
Sbjct: 326 PGHYADKCPKPRRVKNAPVPNNPNVPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPATV 385
Query: 528 IIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEM 587
+ D+GATH F++ S G+++ + ++V TP V ++ C + + F
Sbjct: 386 LFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGN-QVFSTQYCPSVTIEIEEVPFPS 444
Query: 588 DLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGI 647
L+ L +DVILGM+WL + +I+C ++ V ++ E+ + F S+ + G+
Sbjct: 445 SLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNSNGETVSFFASSPK-----SHGV 499
Query: 648 LMFSLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAP 707
++ NQ + +P+V D+P+VFP+++P +PP+R++EF IDLVPGT P+ P
Sbjct: 500 VL----------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRP 549
Query: 708 YRISASEL---KKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIK 764
YR++A+EL KKQ++DLL+K ++RPS SPWGA V+ V+KKD + R+C+DYR LN+VTIK
Sbjct: 550 YRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYRALNEVTIK 609
Query: 765 NRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
N+YPLPRIDDL DQL GA VFSKIDL SGYHQ
Sbjct: 610 NKYPLPRIDDLFDQLEGATVFSKIDLHSGYHQ 641
Score = 87.0 bits (214), Expect = 2e-15
Identities = 53/157 (33%), Positives = 77/157 (48%), Gaps = 5/157 (3%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL +E+ ++QCTE++KV F +HQL A +WW
Sbjct: 66 FLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQ 125
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
G +TW F F + + P V K+ EF L QG+ SVTEY F L+++ P
Sbjct: 126 GRA-GGEPITWQEFTAAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP 184
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRLDTTTESFQDW 158
+ E R K GL ++ L T F+D+
Sbjct: 185 EDVRTDEE--RQEKFLEGLNDELSYALMAT--DFRDF 217
>gb|AAP52680.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532182|ref|NP_920393.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|23266283|gb|AAN16322.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1796
Score = 341 bits (875), Expect = 5e-92
Identities = 212/619 (34%), Positives = 326/619 (52%), Gaps = 35/619 (5%)
Query: 199 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 258
+Q + G L F++ PPTF +P A WL IE+ ++Q +++KV F
Sbjct: 352 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF 411
Query: 259 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 318
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 412 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 470
Query: 319 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 378
+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 471 RTVTEYLQEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 528
Query: 379 RIYEEDTKAHYKVVNERKGKG----QQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 434
I +ED + K+ +RK Q S +P P +G + VR+ + +++
Sbjct: 529 -IRQEDQRN--KMDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPFNSSNFHQ 585
Query: 435 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 489
+ G + H A P + G + CFNC GH + +C +
Sbjct: 586 GSSGSQNHHGGQPNRGAAPRPPMAPAQSGPSAQAKKETGAKPGSCFNCGELGHFADKCPK 645
Query: 490 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 546
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 646 PRRAGPRFIQARVNHASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMY 705
Query: 547 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 606
GL +++ M V TP S + S + + F +L+ L +DVILGM+WL
Sbjct: 706 GLRKEELSTPMRVHTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 764
Query: 607 EYNHVLINCFSKSVHFSSVEEESGA--EFLSTKQLKQLERDGILMFSLMATLSIE----N 660
+I+C +++V ++ + E+ +S KQ G+ + + A + ++ N
Sbjct: 765 TKFKGVIDCANRTVTLTNEKGETVVYKSLVSPKQ-------GVSLNQIEAEIPVDTVEKN 817
Query: 661 QAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KK 717
++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KK
Sbjct: 818 LRKLEDIPIVCEYPEVFPEDLTIMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKK 877
Query: 718 QLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMD 777
Q+++ L+K ++RPS SPWGA V+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL D
Sbjct: 878 QVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFD 937
Query: 778 QLVGARVFSKIDLRSGYHQ 796
QL GA+VFSKIDLRSGYHQ
Sbjct: 938 QLKGAKVFSKIDLRSGYHQ 956
Score = 97.4 bits (241), Expect = 2e-18
Identities = 54/147 (36%), Positives = 77/147 (51%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL IE+ ++QC +++KV F THQL A WW +
Sbjct: 370 FLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMA 429
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T G VTWA F R F + P+ V +K+ EF L QGN +VTEY +F L+++ P
Sbjct: 430 T-RPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLQEFNRLARYAP 488
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE K GL ++ +L
Sbjct: 489 EDVRTDAEKQE--KFMAGLDDELTNQL 513
>gb|AAP52470.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531762|ref|NP_920183.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|21321760|gb|AAM47295.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18657020|gb|AAL78107.1| Putative polyprotein [Oryza
sativa]
Length = 1819
Score = 341 bits (875), Expect = 5e-92
Identities = 214/617 (34%), Positives = 324/617 (51%), Gaps = 31/617 (5%)
Query: 199 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 258
+Q + G L F++ PPTF +P A WL IE+ ++Q +++KV F
Sbjct: 375 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF 434
Query: 259 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 318
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 435 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 493
Query: 319 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 378
+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 494 RTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 551
Query: 379 RIYEEDTKAHYKVVNERKGKG----QQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 434
I +ED + K+ +RK Q S +P P +G + VR+ + + +
Sbjct: 552 -IRQEDQRN--KMDRKRKAAQFRAHQGSHQRPRFTPGQQGGPTTMIVRQHRPFNPSNFHQ 608
Query: 435 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 489
G + H A P + G+ + CFNC GH + +C +
Sbjct: 609 GTSGSQNHHGGQPNRGAAPRPPMAPAQSGQPTQAKKETGAKPGSCFNCGELGHFADKCPK 668
Query: 490 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 546
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 669 PRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMH 728
Query: 547 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 606
GL +++ M V TP S + + + F +L+ L G+DVILGM+WL
Sbjct: 729 GLIREELSTPMRVHTPGNSSTSVQF-SPSITIEIQRSPFLANLILLDSKGLDVILGMDWL 787
Query: 607 EYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMFSLMATLSIE----NQA 662
+I+C +++V ++ E G E + K L R G+ + + + ++ N
Sbjct: 788 TKFKGVIDCANRTV---TLTNEKG-ETVVYKSLVS-PRKGVSLNQIETEIPVDTVEKNSR 842
Query: 663 VIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KKQL 719
+D +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KKQ+
Sbjct: 843 KLDDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQV 902
Query: 720 EDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQL 779
++ L+K ++RPS SPWGA V+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL
Sbjct: 903 DEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQL 962
Query: 780 VGARVFSKIDLRSGYHQ 796
GA+VFSKIDLRSGYHQ
Sbjct: 963 KGAKVFSKIDLRSGYHQ 979
Score = 97.1 bits (240), Expect = 2e-18
Identities = 54/147 (36%), Positives = 77/147 (51%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL IE+ ++QC +++KV F THQL A WW +
Sbjct: 393 FLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMA 452
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T G VTWA F R F + P+ V +K+ EF L QGN +VTEY +F L+++ P
Sbjct: 453 T-RPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP 511
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE K GL ++ +L
Sbjct: 512 EDVRTDAEKQE--KFMAGLDDELTNQL 536
>gb|AAD27547.1| polyprotein [Oryza sativa subsp. indica]
Length = 1521
Score = 340 bits (873), Expect = 8e-92
Identities = 217/626 (34%), Positives = 330/626 (52%), Gaps = 34/626 (5%)
Query: 191 QAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQY 250
Q + Q V QQ + G L F++ PPTF +P A WL IE+ ++Q
Sbjct: 70 QRMMQHVEQQ-HQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQC 128
Query: 251 TEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIE 310
+++KV F THQL A WW + T G +TWA F R F + + V +K+ E
Sbjct: 129 NDQEKVAFATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKRE 187
Query: 311 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRV 370
F L QGN +VTEY +F L+++ P +AE KF GL ++ +
Sbjct: 188 FRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYAD 245
Query: 371 FQDLVNSCRIYEEDTKAHYKVVNERKGKG----QQSRPKPYSAPADKGKQKMVDVRRPKK 426
F+ LV+ I +ED + K+ +RK Q S +P P +G + VR+ +
Sbjct: 246 FERLVDKA-IRQEDQRN--KMDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRP 302
Query: 427 KDAAEIVCFNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEG 481
+++ + G + H + A P + G+ + CFNC G
Sbjct: 303 FNSSNFHQGSSGSQNHHGSQPNRGAAPRPPMAPAQSGQPAQAKKETGVKPGSCFNCGELG 362
Query: 482 HISSQCTQPKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFI 538
H + +C +P+RA RV + + + ++ GT +N+ P + D+GATH FI
Sbjct: 363 HFADKCPKPRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFI 422
Query: 539 AFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMD 598
+ V GL ++ M V TP S + S + + F +L+ L +D
Sbjct: 423 SKKFVGMYGLRKEELRTPMRVHTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLD 481
Query: 599 VILGMNWLEYNHVLINCFSKSVHFSSVEEESGAE--FLSTKQ---LKQLERDGILMFSLM 653
VILGM+WL +I+C +++V ++ + E+ +S KQ L Q+E + +
Sbjct: 482 VILGMDWLTKFKGVIDCANRTVTLTNEKGETVVHKSLVSPKQGASLNQIEAE------IP 535
Query: 654 ATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISAS 713
+N ++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+
Sbjct: 536 VDTMEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAAN 595
Query: 714 EL---KKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLP 770
EL KKQ+++ L+K ++RPS SPWGA V+ V+KKD + R+C+DYR LN+VTIKN+YPLP
Sbjct: 596 ELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLP 655
Query: 771 RIDDLMDQLVGARVFSKIDLRSGYHQ 796
RIDDL DQL GA+VFSKIDLRSGYHQ
Sbjct: 656 RIDDLFDQLKGAKVFSKIDLRSGYHQ 681
Score = 97.1 bits (240), Expect = 2e-18
Identities = 54/147 (36%), Positives = 77/147 (51%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL IE+ ++QC +++KV F THQL A WW +
Sbjct: 95 FLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMA 154
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T G VTWA F R F + P+ V +K+ EF L QGN +VTEY +F L+++ P
Sbjct: 155 T-RPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP 213
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE K GL ++ +L
Sbjct: 214 EDVRTDAEKQE--KFMAGLDDELTNQL 238
>gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1640
Score = 340 bits (872), Expect = 1e-91
Identities = 217/629 (34%), Positives = 328/629 (51%), Gaps = 54/629 (8%)
Query: 193 VAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTE 252
V QA QQ N + L F++ P TF +P A WL +E+ ++Q TE
Sbjct: 355 VQQAQNQQGNNHNQLPPPQNKLADFLRVRPATFSSTTNPVEAGIWLHAVEKKLDLIQCTE 414
Query: 253 EQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFL 312
++KV F +HQL A +WW EG +TW F F + + V K+ EF
Sbjct: 415 QEKVSFASHQLHGPAAEWWDHFRQNRA-EGDPITWQEFTAAFKKTHIPLGVVALKKREFR 473
Query: 313 ELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQ 372
L QG+ SVTEY F L+++ P + E R KF GL ++ A+ + FQ
Sbjct: 474 ALNQGSHSVTEYLHDFNHLARYAPEDVLTDEE--RQEKFLEGLNDELSYALMSTDYQDFQ 531
Query: 373 DLVNSCRIYEEDTKAHYKVVNERKGK-----GQQSRPK----PYSAPADKGKQKMVDVRR 423
LV+ I +ED + R + G RP+ P +AP +G V R
Sbjct: 532 QLVDKA-IRQEDKYNRMEQKKRRAAQFKAQQGSSQRPRIALGPQAAPYPQGG--FSSVTR 588
Query: 424 PKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRTDI-VCFNCNGEGH 482
P+++ F G++SN + + V + + + + VCFNC GH
Sbjct: 589 PQRQ-------FYNNNTGNRSNDNRNVVARPVAAPTQNQPIRKEQGSKLGVCFNCGDPGH 641
Query: 483 ISSQCTQP---KRAPTTG---------RVFALTGTQTENEDRLIRGTCYINNTPLVAIID 530
+ +C +P K AP RV + + +N ++ GT +N+ P + D
Sbjct: 642 YADKCPKPRCVKNAPVQNNSNAPAPKARVNHVAVAEAQNAPDVVLGTFPVNSIPAFVLFD 701
Query: 531 TGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLV 590
+GATH F++ S G+++ + ++V TP V+++ C + + F L+
Sbjct: 702 SGATHSFLSKSFASNHGMEVISLGRPLLVNTPGN-QVSSTQYCPSVTIEIEEIPFPSSLI 760
Query: 591 CLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMF 650
L +DVILGM+WL + +I+C ++ V +S E+ + F+S+ + L
Sbjct: 761 LLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSSNGETVSFFVSSPKSHGL-------- 812
Query: 651 SLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRI 710
TL NQ + +P+V D+P+VFP+++P +PP+R++EF IDLVPGT P+ PYR+
Sbjct: 813 ----TL---NQVALQEIPIVRDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRM 865
Query: 711 SASEL---KKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRY 767
+A+EL K+Q++DLL+K ++RPS SPWGA V+ V+KKD + R+C+DY LN+VTIKN+Y
Sbjct: 866 AANELAEVKRQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYHALNEVTIKNKY 925
Query: 768 PLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
PLPRIDDL DQL GA FSKIDLRSGYHQ
Sbjct: 926 PLPRIDDLFDQLEGATFFSKIDLRSGYHQ 954
Score = 85.5 bits (210), Expect = 6e-15
Identities = 53/157 (33%), Positives = 78/157 (48%), Gaps = 5/157 (3%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ P TF +P A WL +E+ ++QCTE++KV F +HQL A +WW
Sbjct: 379 FLRVRPATFSSTTNPVEAGIWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQ 438
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
EG +TW F F + + P V K+ EF L QG+ SVTEY F L+++ P
Sbjct: 439 NRA-EGDPITWQEFTAAFKKTHIPLGVVALKKREFRALNQGSHSVTEYLHDFNHLARYAP 497
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRLDTTTESFQDW 158
+ E R K GL ++ L +T +QD+
Sbjct: 498 EDVLTDEE--RQEKFLEGLNDELSYALMST--DYQDF 530
>ref|NP_914275.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1521
Score = 340 bits (872), Expect = 1e-91
Identities = 212/618 (34%), Positives = 322/618 (51%), Gaps = 33/618 (5%)
Query: 199 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 258
+Q + G L F++ PPTF +P A WL IE+ ++Q +++KV F
Sbjct: 77 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF 136
Query: 259 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 318
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 137 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 195
Query: 319 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 378
+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 196 RTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 253
Query: 379 RIYEEDTKAHY----KVVNERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 434
I +ED + K R +G Q RP+ P +G + VR+ + + +
Sbjct: 254 -IRQEDQRNKMDRKRKAAQFRSNQGSQHRPR--FTPGQQGGPTTMIVRQHRPFNPSNFHQ 310
Query: 435 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 489
G + H A P + G+ + CFNC GH + +C +
Sbjct: 311 GTSGSQNHHGGQPNRGAAPRPPMAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPK 370
Query: 490 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 546
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 371 PRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMH 430
Query: 547 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 606
GL +++ M V TP S + + + F +L+ L +DVILGM+WL
Sbjct: 431 GLIREELSTPMRVHTPGNSSTSVQF-SPSITIEIQRSPFLANLILLESKDLDVILGMDWL 489
Query: 607 EYNHVLINCFSKSVHFSSVEEESGA--EFLSTKQ---LKQLERDGILMFSLMATLSIENQ 661
+I+C S++V ++ + E+ +S K+ L Q+E + + +N
Sbjct: 490 TKFKGVIDCASRTVTLTNEKGETVVYKSLVSPKKGASLNQIETE------IPVDTEEKNL 543
Query: 662 AVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KKQ 718
++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KKQ
Sbjct: 544 RKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQ 603
Query: 719 LEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQ 778
+++ L+K ++RPS SPWGA V+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQ
Sbjct: 604 VDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQ 663
Query: 779 LVGARVFSKIDLRSGYHQ 796
L GA+VFSKIDLRSGYHQ
Sbjct: 664 LKGAKVFSKIDLRSGYHQ 681
Score = 97.1 bits (240), Expect = 2e-18
Identities = 54/147 (36%), Positives = 77/147 (51%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL IE+ ++QC +++KV F THQL A WW +
Sbjct: 95 FLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMA 154
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T G VTWA F R F + P+ V +K+ EF L QGN +VTEY +F L+++ P
Sbjct: 155 T-RPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP 213
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE K GL ++ +L
Sbjct: 214 EDVRTDAEKQE--KFMAGLDDELTNQL 238
>gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2408
Score = 340 bits (872), Expect = 1e-91
Identities = 218/630 (34%), Positives = 325/630 (50%), Gaps = 54/630 (8%)
Query: 193 VAQAVGQQPNVNAGANAEA---RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQ 249
V QA QQ N N N L F++ PPTF +P A WL +E+ ++Q
Sbjct: 40 VQQAQNQQGN-NQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQ 98
Query: 250 YTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEI 309
TE++KV F +HQL A +WW EG +TW F F + + V K+
Sbjct: 99 CTEQEKVSFASHQLHGPAAEWWDHFRQGRA-EGEPITWQEFTAAFKKTHIPTGVVALKKR 157
Query: 310 EFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLR 369
EF L QG+ SVTEY F L+ + P + E R KF GL ++ A+ R
Sbjct: 158 EFRALNQGSRSVTEYLHDFNRLAHYAPEDVRTDEE--RQEKFLEGLNDELSYALMSTDFR 215
Query: 370 VFQDLVNSCRIYEEDTKAHYKVVNERKGK-----GQQSRPKPYSAPADKGKQK--MVDVR 422
FQ LV+ I +ED + R + G RP+ + P D + V
Sbjct: 216 DFQQLVDKA-IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLITGPQDPSYPQGGSSSVV 274
Query: 423 RPKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVA-DCNRTDIVCFNCNGEG 481
RP+++ F G++ N + + + V + VCFNC G
Sbjct: 275 RPQRQ-------FYNNNTGNRGNDNRNMVARPAATPAQNQPVRKEQGSKPGVCFNCGDPG 327
Query: 482 HISSQCTQPKR-----APTTG-------RVFALTGTQTENEDRLIRGTCYINNTPLVAII 529
H + +C +P+R AP RV + + +N ++ GT +N+ P +
Sbjct: 328 HYADKCPKPRRVKNAPAPNNSNAPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPASVLF 387
Query: 530 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDL 589
D+GATH F++ S G+++ + ++V TP V ++ C + + F L
Sbjct: 388 DSGATHSFLSKSFASNYGMEVISLGRHLLVNTPGN-QVFSTQYCPSATIEIEEVPFPSSL 446
Query: 590 VCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILM 649
+ L +DVILGM+WL + +I+C + V +S E+ + F+S+ + G+++
Sbjct: 447 ILLESKDLDVILGMDWLSRHRGVIDCANCKVTLTSSNGETVSFFVSSPKYH-----GVIL 501
Query: 650 FSLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYR 709
NQ + +P+V D+P+VFP+++P +PP+R++EF IDLVPGT P+ PYR
Sbjct: 502 ----------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIDKRPYR 551
Query: 710 ISASEL---KKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNR 766
++A+EL K+Q+EDLL+K ++RPS S WGA V+ V+KKD + R+C+DYR LN+VTIKN+
Sbjct: 552 MAANELAEVKRQVEDLLQKGYIRPSTSLWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNK 611
Query: 767 YPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
YPLPRIDDL DQL GA VFSKIDLRSGYHQ
Sbjct: 612 YPLPRIDDLFDQLEGATVFSKIDLRSGYHQ 641
Score = 88.6 bits (218), Expect = 7e-16
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 5/157 (3%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL +E+ ++QCTE++KV F +HQL A +WW
Sbjct: 66 FLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQ 125
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
EG +TW F F + + P V K+ EF L QG+ SVTEY F L+ + P
Sbjct: 126 GRA-EGEPITWQEFTAAFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLAHYAP 184
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRLDTTTESFQDW 158
+ E R K GL ++ L +T F+D+
Sbjct: 185 EDVRTDEE--RQEKFLEGLNDELSYALMST--DFRDF 217
Score = 40.4 bits (93), Expect = 0.23
Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
Query: 434 CFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQC 487
C CGE GH +++C CV C ++ H C + I CF C G H+ C
Sbjct: 2184 CSRCGEIGHVASSC---ATICVHC-EEDHPPDRCPTSRITCFFCEGTDHVPKDC 2233
Score = 38.1 bits (87), Expect = 1.2
Identities = 16/46 (34%), Positives = 23/46 (49%)
Query: 469 RTDIVCFNCNGEGHISSQCTQPKRAPTTGRVFALTGTQTENEDRLI 514
R DI CFNC G GH + +C +P+ + V A Q R++
Sbjct: 2287 REDICCFNCQGMGHFADKCPKPRNIAASTSVHATPCNQKLAPQRIV 2332
>ref|NP_908773.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1521
Score = 340 bits (871), Expect = 1e-91
Identities = 210/617 (34%), Positives = 323/617 (52%), Gaps = 31/617 (5%)
Query: 199 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 258
+Q + G L F++ PPTF +P WL IE+ ++Q +++KV F
Sbjct: 77 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEVNDWLHAIEKKLNLLQCNDQEKVAF 136
Query: 259 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 318
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 137 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 195
Query: 319 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 378
+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 196 RTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 253
Query: 379 RIYEEDTKAHY----KVVNERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 434
I +ED + K R +G Q RP+ P +G + VR+ + +++
Sbjct: 254 -IRQEDQRNKMDRKRKAAQFRSNQGSQHRPR--FTPGQQGGPTTMIVRQHRPFNSSNFHQ 310
Query: 435 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 489
G + H+ A P + + + CFNC GH + +C +
Sbjct: 311 GTSGSQNHQGGQPNRGAAPRPPMAPAQSAQPAQAKKETGAKPGSCFNCGELGHFADKCPK 370
Query: 490 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 546
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 371 PRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMY 430
Query: 547 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 606
GL +++ M V TP S + S + + F +L+ L +DVILGM+WL
Sbjct: 431 GLRKEELSTPMRVRTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 489
Query: 607 EYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMFSLMATLSIE----NQA 662
+I+C S++V ++ + E+ + S KQ G+ + + + ++ N
Sbjct: 490 TKFKGVIDCASRTVTLTNEKGET-VVYKSPGSPKQ----GVSLNQIETEIPVDTVGKNLR 544
Query: 663 VIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KKQL 719
++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KKQ+
Sbjct: 545 KLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQV 604
Query: 720 EDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQL 779
++ L+K ++RPS SPWGA V+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL
Sbjct: 605 DEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQL 664
Query: 780 VGARVFSKIDLRSGYHQ 796
GA+VFSKIDLRSGYHQ
Sbjct: 665 KGAKVFSKIDLRSGYHQ 681
Score = 95.5 bits (236), Expect = 6e-18
Identities = 53/147 (36%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P WL IE+ ++QC +++KV F THQL A WW +
Sbjct: 95 FLRVRPPTFSSTTNPMEVNDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMA 154
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T G VTWA F R F + P+ V +K+ EF L QGN +VTEY +F L+++ P
Sbjct: 155 T-RPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP 213
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE K GL ++ +L
Sbjct: 214 EDVRTDAEKQE--KFMAGLDDELTNQL 238
>gb|AAP52880.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532582|ref|NP_920593.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|15217199|gb|AAK92543.1| Putative retroelement [Oryza
sativa]
Length = 1773
Score = 339 bits (870), Expect = 2e-91
Identities = 212/618 (34%), Positives = 324/618 (52%), Gaps = 33/618 (5%)
Query: 199 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 258
+Q + G L F++ PPTF +P A WL IE+ ++Q +++KV F
Sbjct: 333 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF 392
Query: 259 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 318
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 393 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 451
Query: 319 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 378
+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 452 RTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 509
Query: 379 RIYEEDTKAHYKVVNERKGKG----QQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 434
I +ED + K+ +RK Q S +P P +G + VR+ + + +
Sbjct: 510 -IRQEDQRN--KIDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPFNPSNFHQ 566
Query: 435 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 489
G + H A P + G+ + CFNC GH + +C +
Sbjct: 567 GTSGSQNHHGGQPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPK 626
Query: 490 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 546
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 627 PRRAGPRFIQARVNHASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGRY 686
Query: 547 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 606
GL +++ M V TP S + S + + F +L+ L +DVILGM+WL
Sbjct: 687 GLRKEELSTPMRVHTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 745
Query: 607 EYNHVLINCFSKSVHFSSVEEESGA--EFLSTKQ---LKQLERDGILMFSLMATLSIENQ 661
+I+C +++V ++ + E+ +S K+ L Q+E + + +N
Sbjct: 746 TKFKGVIDCANRTVTLTNEKGETVVYKSLVSPKKGVSLNQIETE------IPVDTVEKNL 799
Query: 662 AVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KKQ 718
++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KKQ
Sbjct: 800 RKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQ 859
Query: 719 LEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQ 778
+++ L+K ++RPS SPWGA V+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQ
Sbjct: 860 VDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQ 919
Query: 779 LVGARVFSKIDLRSGYHQ 796
L GA+VFSKIDLRSGYHQ
Sbjct: 920 LKGAKVFSKIDLRSGYHQ 937
Score = 97.1 bits (240), Expect = 2e-18
Identities = 54/147 (36%), Positives = 77/147 (51%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL IE+ ++QC +++KV F THQL A WW +
Sbjct: 351 FLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMA 410
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T G VTWA F R F + P+ V +K+ EF L QGN +VTEY +F L+++ P
Sbjct: 411 T-RPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP 469
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE K GL ++ +L
Sbjct: 470 EDVRTDAEKQE--KFMAGLDDELTNQL 494
>ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultivar-group)]
gi|38346256|emb|CAE02078.2| OSJNBa0074B10.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1447
Score = 339 bits (870), Expect = 2e-91
Identities = 217/630 (34%), Positives = 328/630 (51%), Gaps = 54/630 (8%)
Query: 193 VAQAVGQQPNVNAGANAEA---RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQ 249
V QA QQ N N N L F++ PPTF +P A WL +E+ ++Q
Sbjct: 36 VQQAQNQQAN-NQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQ 94
Query: 250 YTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEI 309
TE++KV F +HQL A +WW EG +TW F F + + V K+
Sbjct: 95 CTEQEKVSFASHQLHGPAAEWWDHFRQGRA-EGEPITWQEFTAAFKKTHIPAGVVALKKR 153
Query: 310 EFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLR 369
EF L QG+ SVTEY F L+++ P + E R KF GL ++ A+
Sbjct: 154 EFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEE--RQEKFLEGLNDELSYALMSTDFW 211
Query: 370 VFQDLVNSCRIYEED--TKAHYKVVNERKGKGQQS---RPKPYSAPADKGKQK--MVDVR 422
FQ LV+ I +ED + K+ + K QQ RP+ + P + V
Sbjct: 212 DFQQLVDKA-IRQEDKYNRMEQKMRRAAQFKAQQGSNQRPRLVTGPQAPSYSQGGSSSVI 270
Query: 423 RPKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVA-DCNRTDIVCFNCNGEG 481
RP+++ F G++ N + + + V + +VCFNC G
Sbjct: 271 RPQRQ-------FYNNNTGNRGNDNRNMVARPAATSAQNQPVRREQGSKPVVCFNCGDPG 323
Query: 482 HISSQCTQPKR-----APTTGRVFA-------LTGTQTENEDRLIRGTCYINNTPLVAII 529
H + +C +P+R AP V A + + +N ++ GT +N+ P +
Sbjct: 324 HYADKCPKPRRVKNALAPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLF 383
Query: 530 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDL 589
D+GATH F++ S G+++ + ++V TP V ++ C + + F L
Sbjct: 384 DSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGN-QVFSTQYCPSATIEIEEVPFPSSL 442
Query: 590 VCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILM 649
+ L +DVILGM+WL + +I+C ++ V +S E+ + F+ + + G+ +
Sbjct: 443 ILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSSNGETVSFFVFSPK-----SHGVNL 497
Query: 650 FSLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYR 709
NQ + +P+V D+P+VFP+++P +PP+R++EF IDLVPGT P+ PYR
Sbjct: 498 ----------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYR 547
Query: 710 ISASEL---KKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNR 766
++A+EL K+Q++DLL+K ++RPS SPWGA V+ V+KKD + R+C+DYR LN+VTIKN+
Sbjct: 548 MAANELAEVKRQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNK 607
Query: 767 YPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
YPLPRIDDL DQL GA VFSKIDLRSGYHQ
Sbjct: 608 YPLPRIDDLFDQLEGATVFSKIDLRSGYHQ 637
Score = 89.4 bits (220), Expect = 4e-16
Identities = 52/150 (34%), Positives = 75/150 (49%), Gaps = 3/150 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL +E+ ++QCTE++KV F +HQL A +WW
Sbjct: 62 FLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQ 121
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
EG +TW F F + + P V K+ EF L QG+ SVTEY F L+++ P
Sbjct: 122 GRA-EGEPITWQEFTAAFKKTHIPAGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP 180
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRLDTT 151
+ E R K GL ++ L +T
Sbjct: 181 EDVRTDEE--RQEKFLEGLNDELSYALMST 208
>ref|XP_471257.1| OSJNBa0056L23.17 [Oryza sativa (japonica cultivar-group)]
gi|38347272|emb|CAE05319.2| OSJNBa0056L23.17 [Oryza
sativa (japonica cultivar-group)]
Length = 963
Score = 339 bits (870), Expect = 2e-91
Identities = 215/629 (34%), Positives = 328/629 (51%), Gaps = 52/629 (8%)
Query: 193 VAQAVGQQPNVNAGANAEA---RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQ 249
V QA QQ N N N L F++ +PPTF +P A WL +E+ ++Q
Sbjct: 204 VQQAQNQQAN-NQNQNPPPPPQNKLADFLRVSPPTFSSTTNPVEAGDWLHAVEKKLDLIQ 262
Query: 250 YTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEI 309
TE++KV F +HQL A +WW G +TW F F + + V K+
Sbjct: 263 CTEQEKVSFASHQLHGPAAEWWDHFRQGRAG-GEPITWQEFTTAFKKTHIPTGVVALKKR 321
Query: 310 EFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLR 369
EF L QG+ SVTEY F L+++ P + E R KF GL ++ A+ R
Sbjct: 322 EFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEE--RQEKFLEGLNDELSYALMSTDFR 379
Query: 370 VFQDLVNSCRIYEEDTKAHYKVVNERKGK-----GQQSRPKPYSAPADKGKQK--MVDVR 422
FQ LV+ I +ED + R + G RP+ + P + V
Sbjct: 380 DFQQLVDKA-IRQEDKYNRMEQKKRRAAQFKSQQGSNQRPRLVTGPQVPSYPQGGSSSVV 438
Query: 423 RPKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGH 482
RP++ + N G +G+ + + + + V + ++CFNC GH
Sbjct: 439 RPQR----QFYNNNTGNRGNDNRSVVA--RPAATPVQNQPVRKEQGSKPVICFNCGDPGH 492
Query: 483 ISSQCTQPKR-----APTTG-------RVFALTGTQTENEDRLIRGTCYINNTPLVAIID 530
+ +C +P+R AP RV + + +N ++ GT +N+ P + D
Sbjct: 493 YADKCPKPRRVKNAPAPNNSSAPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFD 552
Query: 531 TGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLV 590
+GATH F++ S G+++ + ++V TP V ++ C + + F L+
Sbjct: 553 SGATHSFLSKSFASNHGIEVISLGRPLLVNTPGN-QVFSTQYCPSVTIEIEEVLFPSSLI 611
Query: 591 CLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMF 650
L +DVILGM+WL + +I+C ++ V ++ E+ + F S+ + G+++
Sbjct: 612 LLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNSNGETVSFFASSPK-----SHGVVL- 665
Query: 651 SLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRI 710
NQ + +P+V D+P+VFP+++P +PP+R++EF IDLVPGT P+ PYR+
Sbjct: 666 ---------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRM 716
Query: 711 SASEL---KKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRY 767
+A+EL KKQ++DLL+K ++RPS SPWGA V+ V+KKD + R+C+DYR LN+VTIKN+Y
Sbjct: 717 AANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKY 776
Query: 768 PLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
PLPRIDDL DQL GA VFSKIDLRSGYHQ
Sbjct: 777 PLPRIDDLFDQLEGATVFSKIDLRSGYHQ 805
Score = 87.4 bits (215), Expect = 2e-15
Identities = 53/157 (33%), Positives = 79/157 (49%), Gaps = 5/157 (3%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ +PPTF +P A WL +E+ ++QCTE++KV F +HQL A +WW
Sbjct: 230 FLRVSPPTFSSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQ 289
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
G +TW F F + + P V K+ EF L QG+ SVTEY F L+++ P
Sbjct: 290 GRA-GGEPITWQEFTTAFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP 348
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRLDTTTESFQDW 158
+ E R K GL ++ L +T F+D+
Sbjct: 349 EDVRTDEE--RQEKFLEGLNDELSYALMST--DFRDF 381
>gb|AAM74400.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1300
Score = 339 bits (870), Expect = 2e-91
Identities = 212/618 (34%), Positives = 324/618 (52%), Gaps = 33/618 (5%)
Query: 199 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 258
+Q + G L F++ PPTF +P A WL IE+ ++Q +++KV F
Sbjct: 333 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF 392
Query: 259 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 318
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 393 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 451
Query: 319 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 378
+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 452 RTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 509
Query: 379 RIYEEDTKAHYKVVNERKGKG----QQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 434
I +ED + K+ +RK Q S +P P +G + VR+ + + +
Sbjct: 510 -IRQEDQRN--KIDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPFNPSNFHQ 566
Query: 435 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 489
G + H A P + G+ + CFNC GH + +C +
Sbjct: 567 GTSGSQNHHGGQPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPK 626
Query: 490 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 546
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 627 PRRAGPRFIQARVNHASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGRY 686
Query: 547 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 606
GL +++ M V TP S + S + + F +L+ L +DVILGM+WL
Sbjct: 687 GLRKEELSTPMRVHTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 745
Query: 607 EYNHVLINCFSKSVHFSSVEEESGA--EFLSTKQ---LKQLERDGILMFSLMATLSIENQ 661
+I+C +++V ++ + E+ +S K+ L Q+E + + +N
Sbjct: 746 TKFKGVIDCANRTVTLTNEKGETVVYKSLVSPKKGVSLNQIETE------IPVDTVEKNL 799
Query: 662 AVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KKQ 718
++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KKQ
Sbjct: 800 RKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQ 859
Query: 719 LEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQ 778
+++ L+K ++RPS SPWGA V+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQ
Sbjct: 860 VDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQ 919
Query: 779 LVGARVFSKIDLRSGYHQ 796
L GA+VFSKIDLRSGYHQ
Sbjct: 920 LKGAKVFSKIDLRSGYHQ 937
Score = 97.1 bits (240), Expect = 2e-18
Identities = 54/147 (36%), Positives = 77/147 (51%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL IE+ ++QC +++KV F THQL A WW +
Sbjct: 351 FLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMA 410
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T G VTWA F R F + P+ V +K+ EF L QGN +VTEY +F L+++ P
Sbjct: 411 T-RPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP 469
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE K GL ++ +L
Sbjct: 470 EDVRTDAEKQE--KFMAGLDDELTNQL 494
>emb|CAD40170.2| OSJNBa0061A09.9 [Oryza sativa (japonica cultivar-group)]
gi|50921869|ref|XP_471295.1| OSJNBa0061A09.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1653
Score = 339 bits (869), Expect = 2e-91
Identities = 211/618 (34%), Positives = 322/618 (51%), Gaps = 33/618 (5%)
Query: 199 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 258
+Q + G L F++ PPTF +P A WL IE+ ++Q +++KV F
Sbjct: 275 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF 334
Query: 259 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 318
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 335 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 393
Query: 319 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 378
+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 394 RTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 451
Query: 379 RIYEEDTKAHY----KVVNERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 434
I +ED + K R +G Q RP+ P +G + VR+ + +
Sbjct: 452 -IRQEDQRNKMDRKRKAAQFRSNQGSQHRPR--FTPGQQGGPTTMIVRQHRPFHSGNFHQ 508
Query: 435 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 489
G + H+ A P + + + CFNC GH + +C +
Sbjct: 509 GASGSQNHQGGQPNRGAAPRPPMAPAQSAQPAQAKKETGAKPGSCFNCGELGHFADKCPK 568
Query: 490 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 546
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 569 PRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGVH 628
Query: 547 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 606
GL +++ M V TP S + + + G F +L+ L +DVILGM+WL
Sbjct: 629 GLIREELSTPMRVHTPGNSSSSVQF-SPSITIEIQGSPFLANLILLESKDLDVILGMDWL 687
Query: 607 EYNHVLINCFSKSVHFSSVEEESGA--EFLSTKQ---LKQLERDGILMFSLMATLSIENQ 661
+I+C +++V ++ + E+ +S K+ L Q+E + + +N
Sbjct: 688 TKFKGVIDCANRTVTLTNEKGETVVYKSLVSPKKGASLNQIETE------IPVDTEEKNL 741
Query: 662 AVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KKQ 718
++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KKQ
Sbjct: 742 RKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQ 801
Query: 719 LEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQ 778
+++ L+K ++RPS SPWGA V+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQ
Sbjct: 802 VDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQ 861
Query: 779 LVGARVFSKIDLRSGYHQ 796
L GA+VFSKIDLRSGYHQ
Sbjct: 862 LKGAKVFSKIDLRSGYHQ 879
Score = 97.1 bits (240), Expect = 2e-18
Identities = 54/147 (36%), Positives = 77/147 (51%), Gaps = 3/147 (2%)
Query: 2 FMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLP 61
F++ PPTF +P A WL IE+ ++QC +++KV F THQL A WW +
Sbjct: 293 FLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMA 352
Query: 62 TLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYP 121
T G VTWA F R F + P+ V +K+ EF L QGN +VTEY +F L+++ P
Sbjct: 353 T-RPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP 411
Query: 122 HYTGENAEFSRCIKIQNGLRPDIKRRL 148
+AE K GL ++ +L
Sbjct: 412 EDVRTDAEKQE--KFMAGLDDELTNQL 436
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,338,648,829
Number of Sequences: 2540612
Number of extensions: 56999374
Number of successful extensions: 201026
Number of sequences better than 10.0: 5889
Number of HSP's better than 10.0 without gapping: 1979
Number of HSP's successfully gapped in prelim test: 3916
Number of HSP's that attempted gapping in prelim test: 174328
Number of HSP's gapped (non-prelim): 20312
length of query: 805
length of database: 863,360,394
effective HSP length: 136
effective length of query: 669
effective length of database: 517,837,162
effective search space: 346433061378
effective search space used: 346433061378
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)
Medicago: description of AC147714.1