BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147537.6 + phase: 0
(80 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB81840.1| transport protein subunit-like [Arabidopsis thal... 132 3e-30
gb|AAN41304.1| putative transport protein SEC61 beta-subunit [Ar... 130 7e-30
dbj|BAC42429.1| putative transport protein subunit [Arabidopsis ... 130 7e-30
ref|NP_918453.1| P0697C12.13 [Oryza sativa (japonica cultivar-gr... 105 2e-22
dbj|BAC42746.1| protein transport protein subunit - like [Arabid... 97 1e-19
gb|EAL88200.1| translocon subunit [Aspergillus fumigatus Af293] 63 2e-09
gb|AAR10049.1| similar to Drosophila melanogaster Sec61beta [Dro... 61 6e-09
gb|EAL25183.1| GA10096-PA [Drosophila pseudoobscura] 61 6e-09
gb|AAV90726.1| transport protein Sec61 beta subunit-like [Aedes ... 61 8e-09
dbj|BAD97104.1| protein translocation complex beta variant [Homo... 61 8e-09
emb|CAG11937.1| unnamed protein product [Tetraodon nigroviridis] 60 1e-08
ref|XP_329425.1| predicted protein [Neurospora crassa] gi|289270... 60 1e-08
gb|EAA68154.1| conserved hypothetical protein [Gibberella zeae P... 60 2e-08
gb|AAH41270.1| Sec61beta-prov protein [Xenopus laevis] 60 2e-08
emb|CAG77970.1| unnamed protein product [Yarrowia lipolytica CLI... 60 2e-08
ref|XP_315280.2| ENSANGP00000022309 [Anopheles gambiae str. PEST... 59 3e-08
ref|XP_317795.2| ENSANGP00000014901 [Anopheles gambiae str. PEST... 59 3e-08
gb|AAH76372.1| Hypothetical protein LOC436800 [Danio rerio] gi|5... 59 3e-08
gb|AAK68450.1| Hypothetical protein Y38F2AR.9 [Caenorhabditis el... 59 3e-08
ref|XP_419082.1| PREDICTED: similar to Protein transport protein... 59 3e-08
>emb|CAB81840.1| transport protein subunit-like [Arabidopsis thaliana]
gi|42572743|ref|NP_974467.1| sec61beta family protein
[Arabidopsis thaliana] gi|15232357|ref|NP_191613.1|
sec61beta family protein [Arabidopsis thaliana]
gi|11358899|pir||T47865 transport protein subunit-like
- Arabidopsis thaliana
Length = 81
Score = 132 bits (331), Expect = 3e-30
Identities = 67/75 (89%), Positives = 71/75 (94%), Gaps = 1/75 (1%)
Query: 3 LGGGAPQRGSAAATASMRRRKTAGGGAS-GGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 61
+GGGAPQRGSAAATASMRRRK AGG +S GG AGTMLQFYTDDAPGLKISPNVVL+MSIG
Sbjct: 2 VGGGAPQRGSAAATASMRRRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMSIG 61
Query: 62 FIAFVAVLHVVGKLY 76
FIAFVAVLHV+GKLY
Sbjct: 62 FIAFVAVLHVMGKLY 76
>gb|AAN41304.1| putative transport protein SEC61 beta-subunit [Arabidopsis
thaliana] gi|433665|emb|CAA81412.1| Sec61 beta-subunit
homolog [Arabidopsis thaliana]
gi|4895244|gb|AAD32829.1| putative transport protein
SEC61 beta-subunit [Arabidopsis thaliana]
gi|585960|sp|P38389|SC61B_ARATH Protein transport
protein Sec61 beta subunit gi|15225401|ref|NP_182033.1|
sec61beta family protein [Arabidopsis thaliana]
Length = 82
Score = 130 bits (328), Expect = 7e-30
Identities = 67/78 (85%), Positives = 71/78 (90%), Gaps = 4/78 (5%)
Query: 3 LGGGAPQRGSAAATASMRRRK----TAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVM 58
+G GAPQRGSAAATASMRRRK GGGASGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2 VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61
Query: 59 SIGFIAFVAVLHVVGKLY 76
SIGFIAFVAVLHV+GKLY
Sbjct: 62 SIGFIAFVAVLHVMGKLY 79
>dbj|BAC42429.1| putative transport protein subunit [Arabidopsis thaliana]
Length = 81
Score = 130 bits (328), Expect = 7e-30
Identities = 66/75 (88%), Positives = 71/75 (94%), Gaps = 1/75 (1%)
Query: 3 LGGGAPQRGSAAATASMRRRKTAGGGAS-GGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 61
+GGGAPQRGSAAATASMR+RK AGG +S GG AGTMLQFYTDDAPGLKISPNVVL+MSIG
Sbjct: 2 VGGGAPQRGSAAATASMRKRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMSIG 61
Query: 62 FIAFVAVLHVVGKLY 76
FIAFVAVLHV+GKLY
Sbjct: 62 FIAFVAVLHVMGKLY 76
>ref|NP_918453.1| P0697C12.13 [Oryza sativa (japonica cultivar-group)]
Length = 80
Score = 105 bits (263), Expect = 2e-22
Identities = 53/80 (66%), Positives = 59/80 (73%)
Query: 1 MALGGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
M G AP RGSAAA AS+RRR+T G GG A TMLQFYTD+A G K+SPN VL+MSI
Sbjct: 1 MVANGDAPARGSAAAAASLRRRRTTSSGTGGGGASTMLQFYTDEAAGRKMSPNSVLIMSI 60
Query: 61 GFIAFVAVLHVVGKLYLREA 80
GFIA VA+LHV GKLY A
Sbjct: 61 GFIAVVALLHVFGKLYRTSA 80
>dbj|BAC42746.1| protein transport protein subunit - like [Arabidopsis thaliana]
gi|9757748|dbj|BAB08229.1| unnamed protein product
[Arabidopsis thaliana] gi|28973101|gb|AAO63875.1|
putative protein transport protein subunit [Arabidopsis
thaliana] gi|15239337|ref|NP_200854.1| sec61beta family
protein [Arabidopsis thaliana]
Length = 109
Score = 97.1 bits (240), Expect = 1e-19
Identities = 53/84 (63%), Positives = 61/84 (72%), Gaps = 8/84 (9%)
Query: 5 GGAPQRGSAAATASMRRRKTAGGG--ASGGAAGT------MLQFYTDDAPGLKISPNVVL 56
G A RGSAAATA MRRR+ GGG +SGG +G ML+FYTDDAPGLKISP VVL
Sbjct: 22 GLAAPRGSAAATAGMRRRRLGGGGGVSSGGGSGVGSGSSNMLRFYTDDAPGLKISPTVVL 81
Query: 57 VMSIGFIAFVAVLHVVGKLYLREA 80
+MS+ FI FV LHV GKLYL ++
Sbjct: 82 IMSLCFIGFVTALHVFGKLYLHKS 105
>gb|EAL88200.1| translocon subunit [Aspergillus fumigatus Af293]
Length = 131
Score = 62.8 bits (151), Expect = 2e-09
Identities = 31/69 (44%), Positives = 47/69 (67%), Gaps = 2/69 (2%)
Query: 9 QRGSAAATASMR--RRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFV 66
+R +A S+R R + +GG++GTML+ YTD++PGL++ P VVLV+S+GFI V
Sbjct: 57 RRAAADHKESLRNARPSSTRAAGAGGSSGTMLKLYTDESPGLRVDPVVVLVLSLGFIFSV 116
Query: 67 AVLHVVGKL 75
LHV+ K+
Sbjct: 117 VGLHVIAKI 125
>gb|AAR10049.1| similar to Drosophila melanogaster Sec61beta [Drosophila yakuba]
gi|7303165|gb|AAF58229.1| CG10130-PA [Drosophila
melanogaster] gi|21356199|ref|NP_652037.1| CG10130-PA
[Drosophila melanogaster] gi|17945446|gb|AAL48777.1|
RE18615p [Drosophila melanogaster]
gi|6002114|emb|CAB56698.1| sec61beta protein
[Drosophila melanogaster]
Length = 100
Score = 61.2 bits (147), Expect = 6e-09
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFI 63
GGG+ + T++ R A GGA G M +FYTDD+PG+K+ P VLVMS+ FI
Sbjct: 29 GGGSTLKQRKTTTSTTAARSRAPGGAGTGG---MWRFYTDDSPGIKVGPVPVLVMSLLFI 85
Query: 64 AFVAVLHVVGK 74
A V +LH+ GK
Sbjct: 86 ASVFMLHIWGK 96
>gb|EAL25183.1| GA10096-PA [Drosophila pseudoobscura]
Length = 100
Score = 61.2 bits (147), Expect = 6e-09
Identities = 34/73 (46%), Positives = 46/73 (62%), Gaps = 7/73 (9%)
Query: 4 GGGAP--QRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 61
GGG+ QR + ++T + R R G G G M +FYTDD+PG+K+ P VLVMS+
Sbjct: 29 GGGSTLKQRKTTSSTTAARSRAPGGAGTGG-----MWRFYTDDSPGIKVGPVPVLVMSLL 83
Query: 62 FIAFVAVLHVVGK 74
FIA V +LH+ GK
Sbjct: 84 FIASVFMLHIWGK 96
>gb|AAV90726.1| transport protein Sec61 beta subunit-like [Aedes albopictus]
Length = 99
Score = 60.8 bits (146), Expect = 8e-09
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 6/71 (8%)
Query: 10 RGSAAATASMRRRKT------AGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFI 63
R SA ++++++RKT A +G +G M +FYTDD+PG+K+ P VLVMS+ FI
Sbjct: 25 RASAGGSSNLKQRKTTTTTTAARNRTTGTGSGGMWRFYTDDSPGIKVGPVPVLVMSLLFI 84
Query: 64 AFVAVLHVVGK 74
A V +LH+ GK
Sbjct: 85 ASVFMLHIWGK 95
>dbj|BAD97104.1| protein translocation complex beta variant [Homo sapiens]
Length = 96
Score = 60.8 bits (146), Expect = 8e-09
Identities = 35/78 (44%), Positives = 48/78 (60%), Gaps = 8/78 (10%)
Query: 5 GGAPQRGSAAATA--SMRRRKTAG------GGASGGAAGTMLQFYTDDAPGLKISPNVVL 56
G +P + AA A ++R+RK AG G + G M +FYT+D+PGLK+ P VL
Sbjct: 15 GRSPSKAVAARAAGSTVRQRKNAGCGTRSAGRTTSAGTGRMWRFYTEDSPGLKVGPVPVL 74
Query: 57 VMSIGFIAFVAVLHVVGK 74
VMS+ FIA V +LH+ GK
Sbjct: 75 VMSLLFIASVFMLHIWGK 92
>emb|CAG11937.1| unnamed protein product [Tetraodon nigroviridis]
Length = 99
Score = 60.5 bits (145), Expect = 1e-08
Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 9/79 (11%)
Query: 5 GGAPQRGSA--AATASMRRRK-----TAGGGASGGAAGT--MLQFYTDDAPGLKISPNVV 55
G +P + A AA +++R+RK T G S G+AGT M +FYT+D+PGLK+ P V
Sbjct: 17 GRSPSKTVAPRAAGSTVRQRKATSSGTRSGSRSTGSAGTGGMWRFYTEDSPGLKVGPVPV 76
Query: 56 LVMSIGFIAFVAVLHVVGK 74
LVMS+ FIA V +LH+ GK
Sbjct: 77 LVMSLLFIASVFMLHIWGK 95
>ref|XP_329425.1| predicted protein [Neurospora crassa] gi|28927088|gb|EAA36046.1|
predicted protein [Neurospora crassa]
Length = 114
Score = 60.1 bits (144), Expect = 1e-08
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 17 ASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGKL 75
A+ R T GA GG++ TML+ YTD++PGLK+ P VVLV+S+ FI V LH++ K+
Sbjct: 51 ANARPNSTRAAGA-GGSSSTMLRLYTDESPGLKVDPVVVLVLSLVFIFSVVALHIIAKI 108
>gb|EAA68154.1| conserved hypothetical protein [Gibberella zeae PH-1]
gi|46109292|ref|XP_381704.1| conserved hypothetical
protein [Gibberella zeae PH-1]
Length = 113
Score = 59.7 bits (143), Expect = 2e-08
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 17 ASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGKL 75
A+ R T GA GG++ TML+ YTD++PGLK+ P VVLV+S+ FI V LH++ K+
Sbjct: 50 ANARPSSTRAAGA-GGSSSTMLRLYTDESPGLKVDPVVVLVLSLVFIFSVVALHIIAKI 107
>gb|AAH41270.1| Sec61beta-prov protein [Xenopus laevis]
Length = 96
Score = 59.7 bits (143), Expect = 2e-08
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 1 MALGGGAPQRGSAAATA--SMRRRKTAG------GGASGGAAGTMLQFYTDDAPGLKISP 52
+A G +P + A TA ++R+RK A G + G M +FYT+D+PGLK+ P
Sbjct: 11 VAASGRSPSKAVAPRTAGSTVRQRKNASSSTRSAGRTTSAGTGGMWRFYTEDSPGLKVGP 70
Query: 53 NVVLVMSIGFIAFVAVLHVVGK 74
VLVMS+ FIA V +LH+ GK
Sbjct: 71 VPVLVMSLLFIASVFMLHIWGK 92
>emb|CAG77970.1| unnamed protein product [Yarrowia lipolytica CLIB99]
gi|50555510|ref|XP_505163.1| hypothetical protein
[Yarrowia lipolytica] gi|10697176|emb|CAC12697.1|
translocon subunit [Yarrowia lipolytica]
gi|42559879|sp|Q9HFC7|SC61B_YARLI Protein transport
protein SEC61 beta subunit
Length = 91
Score = 59.7 bits (143), Expect = 2e-08
Identities = 30/61 (49%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 15 ATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGK 74
A AS R T GA GG++ TML+ YTD++ GLK+ P VV+V+S+GFI V LH++ K
Sbjct: 26 AKASQRPTSTRSVGA-GGSSSTMLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAK 84
Query: 75 L 75
+
Sbjct: 85 V 85
>ref|XP_315280.2| ENSANGP00000022309 [Anopheles gambiae str. PEST]
gi|55239495|gb|EAA10661.3| ENSANGP00000022309 [Anopheles
gambiae str. PEST]
Length = 106
Score = 58.9 bits (141), Expect = 3e-08
Identities = 31/71 (43%), Positives = 47/71 (65%), Gaps = 6/71 (8%)
Query: 10 RGSAAATASMRRRKT------AGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFI 63
R +A ++++++RKT A +G +G M +FYTDD+PG+K+ P VLVMS+ FI
Sbjct: 32 RAAAGGSSTLKQRKTTTTATAARNRNTGTGSGGMWRFYTDDSPGIKVGPVPVLVMSLLFI 91
Query: 64 AFVAVLHVVGK 74
A V +LH+ GK
Sbjct: 92 ASVFMLHIWGK 102
>ref|XP_317795.2| ENSANGP00000014901 [Anopheles gambiae str. PEST]
gi|55236963|gb|EAA12929.3| ENSANGP00000014901 [Anopheles
gambiae str. PEST]
Length = 106
Score = 58.9 bits (141), Expect = 3e-08
Identities = 31/71 (43%), Positives = 47/71 (65%), Gaps = 6/71 (8%)
Query: 10 RGSAAATASMRRRKT------AGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFI 63
R +A ++++++RKT A +G +G M +FYTDD+PG+K+ P VLVMS+ FI
Sbjct: 32 RAAAGGSSTLKQRKTTTTATAARNRNTGTGSGGMWRFYTDDSPGIKVGPVPVLVMSLLFI 91
Query: 64 AFVAVLHVVGK 74
A V +LH+ GK
Sbjct: 92 ASVFMLHIWGK 102
>gb|AAH76372.1| Hypothetical protein LOC436800 [Danio rerio]
gi|50540124|ref|NP_001002527.1| hypothetical protein
LOC436800 [Danio rerio]
Length = 97
Score = 58.9 bits (141), Expect = 3e-08
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 14 AATASMRRRKTAGGGASGG----AAGT--MLQFYTDDAPGLKISPNVVLVMSIGFIAFVA 67
A T++ +R+ T+ SGG +AGT M +FYT+D+PGLK+ P VLVMS+ FIA V
Sbjct: 27 AGTSARQRKATSSSARSGGRSTASAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVF 86
Query: 68 VLHVVGK 74
+LH+ GK
Sbjct: 87 MLHIWGK 93
>gb|AAK68450.1| Hypothetical protein Y38F2AR.9 [Caenorhabditis elegans]
gi|17543194|ref|NP_500197.1| protein translocation
complex beta (8.6 kD) (4D152) [Caenorhabditis elegans]
Length = 81
Score = 58.9 bits (141), Expect = 3e-08
Identities = 35/70 (50%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 5 GGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIA 64
GG QR AA A R R +GG G + +FYT+D+ GLKI P VLVMS+ FIA
Sbjct: 13 GGVRQRKGGAAAAPARAR-------AGGNNGGLWRFYTEDSTGLKIGPVPVLVMSLVFIA 65
Query: 65 FVAVLHVVGK 74
V VLH+ GK
Sbjct: 66 SVFVLHIWGK 75
>ref|XP_419082.1| PREDICTED: similar to Protein transport protein SEC61 beta
subunit [Gallus gallus]
Length = 96
Score = 58.9 bits (141), Expect = 3e-08
Identities = 35/78 (44%), Positives = 49/78 (61%), Gaps = 8/78 (10%)
Query: 5 GGAPQRGSA--AATASMRRRKTAG------GGASGGAAGTMLQFYTDDAPGLKISPNVVL 56
G +P + A AA +++R+RK A G A+ G M +FYT+D+PGLK+ P VL
Sbjct: 15 GRSPSKAVAPRAAGSTVRQRKNASCGTRSAGRATSTGTGGMWRFYTEDSPGLKVGPVPVL 74
Query: 57 VMSIGFIAFVAVLHVVGK 74
VMS+ FIA V +LH+ GK
Sbjct: 75 VMSLLFIASVFMLHIWGK 92
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,027,118
Number of Sequences: 2540612
Number of extensions: 4984139
Number of successful extensions: 44311
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 44035
Number of HSP's gapped (non-prelim): 262
length of query: 80
length of database: 863,360,394
effective HSP length: 56
effective length of query: 24
effective length of database: 721,086,122
effective search space: 17306066928
effective search space used: 17306066928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC147537.6