BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147537.1 + phase: 0 /pseudo
         (1265 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP09024.1| Macrolide-efflux protein [Bacillus cereus ATCC 14...    39  1.5
gb|AAF73764.1| NADH dehydrogenase 2 [Bombyx mori] gi|15213108|gb...    38  2.5
gb|AAG33817.1| NADH dehydrogenase subunit 2 [Bombyx mori] gi|186...    38  2.5
dbj|BAB88891.1| NADH dehydrogenase 2 [Bombyx mori]                     38  2.5
ref|ZP_00503871.1| Virulence factor MVIN-like [Clostridium therm...    37  3.3
gb|AAS99609.1| latent membrane protein 1 [Human herpesvirus 4]         37  4.3
dbj|BAB84648.1| NADH dehydrogenase subunit 2 [Bombyx mandarina] ...    36  9.5

>gb|AAP09024.1| Macrolide-efflux protein [Bacillus cereus ATCC 14579]
           gi|30020192|ref|NP_831823.1| Macrolide-efflux protein
           [Bacillus cereus ATCC 14579]
          Length = 405

 Score = 38.5 bits (88), Expect = 1.5
 Identities = 38/133 (28%), Positives = 59/133 (43%), Gaps = 11/133 (8%)

Query: 481 LYCLLTIFLVLHGYIF*KIALNYHKFIFLL--LVWLKHNFLVLLRFYAQTMRWNIVILPC 538
           L+ LL +   L   I   + +N      LL  L WLK  FL+LL      +  NI+ L  
Sbjct: 43  LFPLLQVITNLIANISAPLIINRFPSYTLLYTLQWLKTVFLLLLMILFPVLSTNIIALLT 102

Query: 539 FSFSVNKARRFNAHV-------LTPPNKMVELNE--NIVTSLTQFVPFSSQPRVQKSFGG 589
           F F ++    ++A +       LTP  K+V++N   +  T + Q V +S    V    G 
Sbjct: 103 FIFVISLCSGWSAPLLYGILPRLTPKEKLVKVNSIFSFSTQIVQAVAYSFTSIVVLLIGA 162

Query: 590 KQLLMLSIQLIYF 602
              LM++  L+ F
Sbjct: 163 TSTLMINNILMIF 175


>gb|AAF73764.1| NADH dehydrogenase 2 [Bombyx mori] gi|15213108|gb|AAK85718.1| NADH
           dehydrogenase 2 [Bombyx mori]
           gi|8572570|ref|NP_059475.1| NADH dehydrogenase subunit 2
           [Bombyx mori]
          Length = 334

 Score = 37.7 bits (86), Expect = 2.5
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 417 NLLSLVGY*DPQSLSLLIVYIANLANSWLYPLIV--LFLFQIVLLI*SIQTFGGLLLFLQ 474
           +L  L+ +    +L  +I  I    N WL+  ++  + +F ++ L   +  +    LF+ 
Sbjct: 168 SLRKLLAFSSINNLGWMIFSIMISENLWLFYFLIYSMMIFMMISLFFLMNMYFMNQLFIN 227

Query: 475 *MAFVILYCLLTIFLVLHGYIF*KIALNYHKFIFLLLVWLKHNFLVLLRFYAQT---MRW 531
            M F I   LL  FL L G            F+  +  W+  NFL++ +FY  T   M  
Sbjct: 228 NMNFFIKLNLLINFLSLGGL---------PPFMGFMPKWIIINFLLINKFYFLTFIFMMT 278

Query: 532 NIVILPCFSFSVNKARRFNAHVLTPPNKMVELNENIVTSLTQFVPFSS 579
           +++I+  +   +  +  FN   +   N +++ N +++ +L+ F+  SS
Sbjct: 279 SLIIIYYYIRIIYSSFMFNYFKMKWVNLLMKNNMSLI-NLSSFISISS 325


>gb|AAG33817.1| NADH dehydrogenase subunit 2 [Bombyx mori]
           gi|18640070|dbj|BAB84661.1| NADH dehydrogenase subunit 2
           [Bombyx mori]
          Length = 340

 Score = 37.7 bits (86), Expect = 2.5
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 417 NLLSLVGY*DPQSLSLLIVYIANLANSWLYPLIV--LFLFQIVLLI*SIQTFGGLLLFLQ 474
           +L  L+ +    +L  +I  I    N WL+  ++  + +F ++ L   +  +    LF+ 
Sbjct: 174 SLRKLLAFSSINNLGWMIFSIMISENLWLFYFLIYSMMIFMMISLFFLMNMYFMNQLFIN 233

Query: 475 *MAFVILYCLLTIFLVLHGYIF*KIALNYHKFIFLLLVWLKHNFLVLLRFYAQT---MRW 531
            M F I   LL  FL L G            F+  +  W+  NFL++ +FY  T   M  
Sbjct: 234 NMNFFIKLNLLINFLSLGGL---------PPFMGFMPKWIIINFLLINKFYFLTFIFMMT 284

Query: 532 NIVILPCFSFSVNKARRFNAHVLTPPNKMVELNENIVTSLTQFVPFSS 579
           +++I+  +   +  +  FN   +   N +++ N +++ +L+ F+  SS
Sbjct: 285 SLIIIYYYIRIIYSSFMFNYFKMKWVNLLMKNNMSLI-NLSSFISISS 331


>dbj|BAB88891.1| NADH dehydrogenase 2 [Bombyx mori]
          Length = 340

 Score = 37.7 bits (86), Expect = 2.5
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 417 NLLSLVGY*DPQSLSLLIVYIANLANSWLYPLIV--LFLFQIVLLI*SIQTFGGLLLFLQ 474
           +L  L+ +    +L  +I  I    N WL+  ++  + +F ++ L   +  +    LF+ 
Sbjct: 174 SLRKLLAFSSINNLGWMIFSIMISENLWLFYFLIYSMMIFMMISLFFLMNMYFMNQLFIN 233

Query: 475 *MAFVILYCLLTIFLVLHGYIF*KIALNYHKFIFLLLVWLKHNFLVLLRFYAQT---MRW 531
            M F I   LL  FL L G            F+  +  W+  NFL++ +FY  T   M  
Sbjct: 234 NMNFFIKLNLLINFLSLGGL---------PPFMGFMPKWIIINFLLINKFYFLTFIFMMT 284

Query: 532 NIVILPCFSFSVNKARRFNAHVLTPPNKMVELNENIVTSLTQFVPFSS 579
           +++I+  +   +  +  FN   +   N +++ N +++ +L+ F+  SS
Sbjct: 285 SLIIIYYYIRIIYSSFMFNYFKMKWVNLLMKNNMSLI-NLSSFISISS 331


>ref|ZP_00503871.1| Virulence factor MVIN-like [Clostridium thermocellum ATCC 27405]
           gi|67851587|gb|EAM47151.1| Virulence factor MVIN-like
           [Clostridium thermocellum ATCC 27405]
          Length = 512

 Score = 37.4 bits (85), Expect = 3.3
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 485 LTIFLVLHGYIF*KIALNYHKFIFLLLVWLKHNFLVLLRFYAQTMRWNIVILPCFSF 541
           L I+ +  GY+F  +      FI   +V   +NF+V++   A T +WNI+ILP  +F
Sbjct: 132 LGIYFIGLGYVFKSLLQIKDNFIVPAIVGFPYNFIVIISIIAST-KWNIMILPLGTF 187


>gb|AAS99609.1| latent membrane protein 1 [Human herpesvirus 4]
          Length = 358

 Score = 37.0 bits (84), Expect = 4.3
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 430 LSLLIVYIANLANSWLYPL--IVLFLFQIVLLI*SIQTFGGLLLFLQ*MAFVILYCLLTI 487
           L ++I+ I       L PL  +VL L  I+LL+ ++    G  L+L  + F+   CLL +
Sbjct: 62  LIIIILIIFIFRRDLLCPLGGLVLLLLMIILLLSALWNLHGQALYLGILLFIFA-CLLAL 120

Query: 488 FLVLHGYIF*KIALNYHKFIFLLLVWLKHNFLVLLRFYAQTMRWNIVI 535
            L ++  I  ++     + +  +L +     L+++  Y Q   W +++
Sbjct: 121 GLWIYLEILWRLGATIWQLLAFILAFFLDIILLIIALYLQQNWWTLLV 168


>dbj|BAB84648.1| NADH dehydrogenase subunit 2 [Bombyx mandarina]
           gi|18644904|ref|NP_570624.1| NADH dehydrogenase subunit
           2 [Bombyx mandarina]
          Length = 340

 Score = 35.8 bits (81), Expect = 9.5
 Identities = 39/168 (23%), Positives = 74/168 (43%), Gaps = 15/168 (8%)

Query: 417 NLLSLVGY*DPQSLSLLIVYIANLANSWLYPLIV--LFLFQIVLLI*SIQTFGGLLLFLQ 474
           +L  L+ +    +L  +I  I    N WL+  ++  + +F ++ L   +  +    LF+ 
Sbjct: 174 SLRKLLAFSSINNLGWMIFSIMISENLWLFYFLIYSMMIFMMISLFFLMNMYFMNQLFIN 233

Query: 475 *MAFVILYCLLTIFLVLHGYIF*KIALNYHKFIFLLLVWLKHNFLVLLRFYAQT---MRW 531
            M F I   LL  FL L G            F+  +  W+  NFL++ +FY  T   M  
Sbjct: 234 NMNFFIKMNLLINFLSLGGL---------PPFMGFMPKWIIINFLLINKFYFLTFIFMMT 284

Query: 532 NIVILPCFSFSVNKARRFNAHVLTPPNKMVELNENIVTSLTQFVPFSS 579
           +++I+  +   +  +  FN   +   N  ++ N   + +L+ F+  SS
Sbjct: 285 SLIIIYYYIRIIYSSFMFNYFKMKWMNLFMK-NNMFLINLSSFISISS 331


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.351    0.158    0.516 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,748,122,526
Number of Sequences: 2540612
Number of extensions: 63919709
Number of successful extensions: 251667
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 251653
Number of HSP's gapped (non-prelim): 31
length of query: 1265
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1125
effective length of database: 507,674,714
effective search space: 571134053250
effective search space used: 571134053250
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 81 (35.8 bits)