BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147536.4 + phase: 0 /pseudo
(805 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 202 5e-50
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 192 5e-47
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 186 3e-45
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 162 3e-38
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 158 8e-37
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 156 2e-36
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 156 3e-36
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 155 5e-36
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 154 8e-36
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 154 1e-35
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 153 2e-35
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 153 2e-35
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 152 3e-35
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 152 4e-35
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 152 4e-35
ref|XP_474837.1| OSJNBa0052O21.12 [Oryza sativa (japonica cultiv... 152 4e-35
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 152 4e-35
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 150 1e-34
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 150 2e-34
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 150 2e-34
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 202 bits (513), Expect = 5e-50
Identities = 92/219 (42%), Positives = 141/219 (64%)
Query: 1 MSKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWN 60
M + KG K +M +++DLEKAYDR+ W+F++E L I ++ S ++WN
Sbjct: 424 MRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWN 483
Query: 61 GDKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLL 120
G++T++F P+RG+RQGDPLSPYLFV+C+ERL H+I V WKP+ V G +SH+
Sbjct: 484 GERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVC 543
Query: 121 FADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTG 180
FADDL+LFAEAS+ Q + L+ FC++SGQK++ EK++++FS NV + + I + +G
Sbjct: 544 FADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESG 603
Query: 181 FNQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
LGKYLG I R ++ F ++ ++ +L+GW
Sbjct: 604 IGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGW 642
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 192 bits (487), Expect = 5e-47
Identities = 88/189 (46%), Positives = 126/189 (66%)
Query: 1 MSKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWN 60
M + KG+K +M +++DLEKAYDR+ W+F+ + L+ F + I C+S ++WN
Sbjct: 1 MRRKKGSKGWMLLKLDLEKAYDRIRWDFLSDTLVAAGFSEVWVTWIMQCVSGPDMSLLWN 60
Query: 61 GDKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLL 120
G+KT F P RG+RQGD LSPYLFV+CMERL H+I + + WKP+ + R GP +SH+
Sbjct: 61 GEKTTPFKPLRGLRQGDLLSPYLFVLCMERLCHLIERSINAKQWKPINLSRGGPKLSHIC 120
Query: 121 FADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTG 180
FADDL+LFAEAS+EQ V L+ FC +SGQK++ EK++++FSKNV L + I +G
Sbjct: 121 FADDLILFAEASVEQVQIVRRVLEAFCTASGQKVSLEKSKIFFSKNVSRELGKLISDESG 180
Query: 181 FNQVNNLGK 189
+ GK
Sbjct: 181 IQSTCDWGK 189
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 186 bits (471), Expect = 3e-45
Identities = 89/219 (40%), Positives = 130/219 (58%), Gaps = 17/219 (7%)
Query: 1 MSKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWN 60
M + KG K +M +++DLEKAYDR+ W+F+ E L IK I C++ ++WN
Sbjct: 376 MRRKKGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWN 435
Query: 61 GDKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLL 120
G+KT++F P RG+RQGDP+SPYLFV+C+ERL H I V WK + + + GP +SH+
Sbjct: 436 GEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSISISQGGPKVSHVC 495
Query: 121 FADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTG 180
FADDL+LFAEAS+ QK++ EK++++FS NV L I TG
Sbjct: 496 FADDLILFAEASV-----------------AQKVSLEKSKIFFSNNVSRDLEGLITAETG 538
Query: 181 FNQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
LGKYLG + R ++ F ++ ++ ++LSGW
Sbjct: 539 IGSTRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGW 577
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411326|pir||C84488 hypothetical protein
At2g07730 [imported] - Arabidopsis thaliana
Length = 970
Score = 162 bits (411), Expect = 3e-38
Identities = 82/219 (37%), Positives = 122/219 (55%), Gaps = 18/219 (8%)
Query: 1 MSKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWN 60
M + KG K +M +++DLEKAYDR+ WNF++E L+ I ++ S ++WN
Sbjct: 274 MRRKKGRKGWMLLKLDLEKAYDRIRWNFLQETLVATGLSEVWTHRIMAGVTDPSMSVLWN 333
Query: 61 GDKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLL 120
G KT++F P+RG+RQGDPLSPYLFV+C+ERL H+I V + WKPM
Sbjct: 334 GGKTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGTWDWKPM------------- 380
Query: 121 FADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTG 180
L EAS+ Q + L+ FC++SGQ ++ EK+++ FS NV + I +G
Sbjct: 381 -----ALSCEASVAQILIIRRVLEQFCEASGQNVSLEKSKIVFSNNVSRDMERLISGESG 435
Query: 181 FNQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
LGKYLG I R ++ ++ + + L+GW
Sbjct: 436 IGCTRELGKYLGMPILQKRMNKETSGEVLEHVSSSLAGW 474
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 158 bits (399), Expect = 8e-37
Identities = 80/213 (37%), Positives = 122/213 (56%)
Query: 10 FMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTETFYP 69
FM I+ D+ KAYD++ WNF+E L + F K I I CI+T+ YK++ NG P
Sbjct: 354 FMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIP 413
Query: 70 SRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLLLFA 129
RG+RQGDPLSPYLF++C E L I + ++V P +SHLLFADD L F
Sbjct: 414 ERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFC 473
Query: 130 EASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNNLGK 189
+A+ EQ +L L + SGQ+IN K+ + F V++ ++ DI G + + +G
Sbjct: 474 KANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGS 533
Query: 190 YLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
YLG + G + F+ + +++Q++++GW K
Sbjct: 534 YLGLPESLGGSKTKVFSFVRDRLQSRINGWSAK 566
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 156 bits (395), Expect = 2e-36
Identities = 75/214 (35%), Positives = 120/214 (56%)
Query: 10 FMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTETFYP 69
F+ ++D+ KA+D++ W F+E + + F K I CI+T +Y I+ NG P
Sbjct: 25 FVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNWIMTCITTTTYSILINGQPVRRIIP 84
Query: 70 SRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLLLFA 129
RGIRQGDP+SPYL+++C E LS +I +++ + R GP ISHLLFA D L+F
Sbjct: 85 KRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLHGFKASRNGPAISHLLFAHDSLVFC 144
Query: 130 EASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNNLGK 189
+A++E+ +++ L ++ ++SGQ +N +K+ + F K +D E + Q G + G+
Sbjct: 145 KATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEGFGR 204
Query: 190 YLGANIAPGRTSRGHFNHIINKIQNKLSGWMFKL 223
YLG GR F+ I + K+ W KL
Sbjct: 205 YLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKL 238
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 156 bits (394), Expect = 3e-36
Identities = 79/213 (37%), Positives = 120/213 (56%)
Query: 10 FMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTETFYP 69
FM I+ D+ KAYDR+ WNF+EE L + F K I I CI+T+ Y+++ NG P
Sbjct: 420 FMAIKTDMSKAYDRVEWNFIEELLKKMGFCEKWISWIMWCITTVQYRVLLNGQPRGLIVP 479
Query: 70 SRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLLLFA 129
RG+RQGDPLSPYLF++C E L I + ++V P +SHLLFA+D L F
Sbjct: 480 KRGLRQGDPLSPYLFILCTEVLIANIRKAEQEKLITGIKVATASPSVSHLLFANDSLFFC 539
Query: 130 EASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNNLGK 189
+A+ EQ +L L + SGQ IN K+ + F V + ++ +I G + + +G
Sbjct: 540 KANKEQCGVILGILKQYEAVSGQMINFSKSSIQFGHKVGDDIKAEIKSALGIHSIGGMGS 599
Query: 190 YLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
YLG + G + F+ + +++Q +++GW K
Sbjct: 600 YLGLPESLGGSKTRIFSFVRDRLQTRINGWSAK 632
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411392|pir||B84497 hypothetical protein
At2g11240 [imported] - Arabidopsis thaliana
Length = 1044
Score = 155 bits (392), Expect = 5e-36
Identities = 77/212 (36%), Positives = 118/212 (55%)
Query: 8 KAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTETF 67
+ FM ++ ++ KAYDR+ W+F++ + E F I I CI+T+SY + NG
Sbjct: 394 RCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAV 453
Query: 68 YPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLLL 127
P RG+RQGDPLSP+LF+IC E LS + +RV + P ++HLLFADD +
Sbjct: 454 TPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIF 513
Query: 128 FAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNNL 187
F + ++ L L + ++SGQ IN+ K+ + FS+ +H++ + Q G V L
Sbjct: 514 FCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGL 573
Query: 188 GKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
GKYLG GR R FN I+++I+ + W
Sbjct: 574 GKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSW 605
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488322|pir||T00814 RNA-directed DNA
polymerase homolog At2g41580 - Arabidopsis thaliana
Length = 1094
Score = 154 bits (390), Expect = 8e-36
Identities = 82/218 (37%), Positives = 121/218 (54%)
Query: 5 KGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKT 64
K +K FM + D+ KAYDR+ W F++ L+ F S I + C+S++SY ++ NG
Sbjct: 294 KISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPF 353
Query: 65 ETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADD 124
P RG+RQGDPLSP+LFV+C E L HI+ + ++ GP ++HLLFADD
Sbjct: 354 GHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKIGKISGIQFNGTGPSVNHLLFADD 413
Query: 125 LLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQV 184
LL +AS + ++HCL + SGQ IN EK+ + F V+ ++ I+ +G
Sbjct: 414 TLLICKASQLECAEIMHCLSQYGHISGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTE 473
Query: 185 NNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
GKYLG + + F I K+Q++LSGW K
Sbjct: 474 GGTGKYLGLPECFQGSKQVLFGFIKEKLQSRLSGWYAK 511
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 154 bits (389), Expect = 1e-35
Identities = 75/222 (33%), Positives = 130/222 (57%)
Query: 2 SKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNG 61
+K G + ++D+ KAYDR+ W+F+ + +++ F + + +I C+ST++Y+I NG
Sbjct: 763 NKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNG 822
Query: 62 DKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLF 121
+ +E+F P RG+RQGDPLSPYLF++C E S +++ E +R+ + P +SHLLF
Sbjct: 823 ELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLF 882
Query: 122 ADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGF 181
ADD L+ A+ +A + L ++ + SGQ IN++K+ V FS N + + ++
Sbjct: 883 ADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNM 942
Query: 182 NQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFKL 223
+ KYLG + GR+ F+++ +I ++ GW KL
Sbjct: 943 QRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKL 984
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 153 bits (386), Expect = 2e-35
Identities = 76/221 (34%), Positives = 123/221 (55%)
Query: 2 SKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNG 61
++ + ++++M ++ D+ KAYDR+ WNF+E + F IK I + +++Y ++ NG
Sbjct: 924 TRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNG 983
Query: 62 DKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLF 121
T P RGIRQGDPLSPYLF++C + L+H+I ++V + +R+G P ++HL F
Sbjct: 984 IPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQF 1043
Query: 122 ADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGF 181
ADD L F ++++ + D++ SGQKIN K+ + F V + + G
Sbjct: 1044 ADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGI 1103
Query: 182 NQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
GKYLG GR R FN+II +++ + S W K
Sbjct: 1104 QSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAK 1144
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 153 bits (386), Expect = 2e-35
Identities = 76/221 (34%), Positives = 123/221 (55%)
Query: 2 SKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNG 61
++ + ++++M ++ D+ KAYDR+ WNF+E + F IK I + +++Y ++ NG
Sbjct: 944 TRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNG 1003
Query: 62 DKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLF 121
T P RGIRQGDPLSPYLF++C + L+H+I ++V + +R+G P ++HL F
Sbjct: 1004 IPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQF 1063
Query: 122 ADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGF 181
ADD L F ++++ + D++ SGQKIN K+ + F V + + G
Sbjct: 1064 ADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGI 1123
Query: 182 NQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
GKYLG GR R FN+II +++ + S W K
Sbjct: 1124 QSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAK 1164
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 152 bits (385), Expect = 3e-35
Identities = 76/220 (34%), Positives = 126/220 (56%)
Query: 2 SKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNG 61
S+ + ++ ++ D+ KAYDR+ WNF+E+ +++ F + +K I C++++SY+++ NG
Sbjct: 924 SRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLING 983
Query: 62 DKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLF 121
+PSRGIRQGDPLSPYLF+ C E LS+++ + M++ + ISHLLF
Sbjct: 984 SPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLF 1043
Query: 122 ADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGF 181
ADD L F AS + + + ++SGQKIN K+ + F + + R+ + + G
Sbjct: 1044 ADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGI 1103
Query: 182 NQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMF 221
+ V GKYLG GR F +I+ K++ + GW +
Sbjct: 1104 DNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAY 1143
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 152 bits (384), Expect = 4e-35
Identities = 80/216 (37%), Positives = 122/216 (56%)
Query: 7 NKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTET 66
+K M + D+ KAYDR+ W F+E + F +K I I +C++++SY ++ NG
Sbjct: 545 SKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGH 604
Query: 67 FYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLL 126
P+RGIRQGDPLSP LFV+C E L HI+ ++ ++ ++HLLFADD L
Sbjct: 605 IIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTL 664
Query: 127 LFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNN 186
L +A+ ++ ++ CL + Q SGQ IN K+ + F KNVD +++ I +G +
Sbjct: 665 LMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGG 724
Query: 187 LGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
GKYLG + R F I K+Q++L+GW K
Sbjct: 725 TGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAK 760
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 152 bits (384), Expect = 4e-35
Identities = 76/221 (34%), Positives = 126/221 (56%)
Query: 3 KMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGD 62
+ KG I++D+ KAYDR+ W+F+ ++ F + + ++ C+++++Y+I NG+
Sbjct: 911 RKKGKNGVAAIKLDMSKAYDRVEWDFLRHMMLRLGFHDQWVNLVMKCVTSVTYRIKINGE 970
Query: 63 KTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFA 122
++ YP RG+RQGDPLSPYLF+IC E LS ++ + ++V R P I+HL FA
Sbjct: 971 HSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQKAQADGKIEGIKVCRDTPRINHLFFA 1030
Query: 123 DDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFN 182
DD L+ A A + L+++ +SGQ IN++K+ V FS N R ++ N
Sbjct: 1031 DDSLVLMRAGQNDAQELRRVLNIYEVASGQVINKDKSSVLFSPNTLQSDRMEVRSALCIN 1090
Query: 183 QVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFKL 223
Q +YLG ++ G++ R F +I K+ ++ GW KL
Sbjct: 1091 QEAKNERYLGLPVSIGKSRRKAFEYIKRKVWLRIQGWQEKL 1131
>ref|XP_474837.1| OSJNBa0052O21.12 [Oryza sativa (japonica cultivar-group)]
gi|38345009|emb|CAE01608.2| OSJNBa0052O21.12 [Oryza
sativa (japonica cultivar-group)]
Length = 427
Score = 152 bits (384), Expect = 4e-35
Identities = 72/201 (35%), Positives = 117/201 (57%)
Query: 19 KAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTETFYPSRGIRQGDP 78
KAYDR+ W+F+ CL++ F I+ + C++++ Y + NG+ T PSRG+RQGDP
Sbjct: 3 KAYDRVEWSFLHGCLLKLGFADPWIQTVMRCVTSVRYAVRINGELTNPVTPSRGLRQGDP 62
Query: 79 LSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLLLFAEASIEQAHC 138
+SPYLF++C E LS I+ + + +R GR GP ISHLLFADD + FA + +
Sbjct: 63 ISPYLFLLCTEGLSSILQKKESMGVIQGIRNGRLGPPISHLLFADDSIFFARSDLHSVQG 122
Query: 139 VLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNNLGKYLGANIAPG 198
+ L +C++SGQKIN +K+ ++F +N ++ + + + YLG G
Sbjct: 123 LKDALQAYCKASGQKINLQKSSIFFGQNCLEDIKNSVKETLQVSVEILQDTYLGMPTEIG 182
Query: 199 RTSRGHFNHIINKIQNKLSGW 219
R S G F+ + ++ +++GW
Sbjct: 183 RASTGSFHFLPERVWRRVNGW 203
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 152 bits (384), Expect = 4e-35
Identities = 80/216 (37%), Positives = 122/216 (56%)
Query: 7 NKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTET 66
+K M + D+ KAYDR+ W F+E + F +K I I +C++++SY ++ NG
Sbjct: 566 SKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGH 625
Query: 67 FYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLL 126
P+RGIRQGDPLSP LFV+C E L HI+ ++ ++ ++HLLFADD L
Sbjct: 626 IIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTL 685
Query: 127 LFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNN 186
L +A+ ++ ++ CL + Q SGQ IN K+ + F KNVD +++ I +G +
Sbjct: 686 LMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGG 745
Query: 187 LGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
GKYLG + R F I K+Q++L+GW K
Sbjct: 746 TGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAK 781
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 150 bits (380), Expect = 1e-34
Identities = 80/218 (36%), Positives = 117/218 (52%)
Query: 5 KGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKT 64
K +K FM + D+ KAYDR+ W+F++E L+ F K I I C+++++Y ++ NG
Sbjct: 517 KISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKWISWIMGCVTSVTYSVLINGQHF 576
Query: 65 ETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADD 124
P RGIRQGDP+SP+LFV+C E L HI+ S ++ GP ++HLLF DD
Sbjct: 577 GHITPERGIRQGDPISPFLFVLCTEALIHILQQAENSKKVSGIQFNGSGPSVNHLLFVDD 636
Query: 125 LLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQV 184
L A+ ++ CL + SGQ IN EK+ + F VD + I +G +
Sbjct: 637 TQLVCRATKSDCEQMMLCLSQYGHISGQLINVEKSSITFGVKVDEDTKRWIKNRSGIHLE 696
Query: 185 NNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
GKYLG + + F +I K+Q+ LSGW K
Sbjct: 697 GGTGKYLGLPENLSGSKQDLFGYIKEKLQSHLSGWYDK 734
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 150 bits (378), Expect = 2e-34
Identities = 74/217 (34%), Positives = 119/217 (54%)
Query: 3 KMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGD 62
K F ++ID+ KAYDR+ W ++ CL + F I + C+S++ Y + NG+
Sbjct: 578 KQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGE 637
Query: 63 KTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFA 122
T+ PSRGIRQGDP+SPYLF++C E LS ++ + + + ++ GR+GP ISHLLFA
Sbjct: 638 LTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFA 697
Query: 123 DDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFN 182
DD + FA+A + + L +C +SGQKIN K+ ++F K + ++ + +
Sbjct: 698 DDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVD 757
Query: 183 QVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
YLG G + F + +I +++GW
Sbjct: 758 NEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGW 794
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 150 bits (378), Expect = 2e-34
Identities = 78/222 (35%), Positives = 120/222 (53%), Gaps = 2/222 (0%)
Query: 3 KMKGNKAF--MTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWN 60
++ G K + M I+ D+ KAYDR+ WNF++E LM F K I+ + C+ T+SY + N
Sbjct: 502 RVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLIN 561
Query: 61 GDKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLL 120
G + PSRG+RQGDPLSPYLF++C E LS + E +RV R P ++HLL
Sbjct: 562 GSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLL 621
Query: 121 FADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTG 180
FADD + F + + + + L + +SGQ IN K+ + FS ++ +
Sbjct: 622 FADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLR 681
Query: 181 FNQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
+ +GKYLG GR R F+ I+++I+ + W +
Sbjct: 682 IDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIR 723
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.363 0.164 0.635
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,165,937,423
Number of Sequences: 2540612
Number of extensions: 43851856
Number of successful extensions: 158349
Number of sequences better than 10.0: 872
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 216
Number of HSP's that attempted gapping in prelim test: 156885
Number of HSP's gapped (non-prelim): 1072
length of query: 805
length of database: 863,360,394
effective HSP length: 136
effective length of query: 669
effective length of database: 517,837,162
effective search space: 346433061378
effective search space used: 346433061378
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 79 (35.0 bits)
Medicago: description of AC147536.4