BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147484.13 + phase: 0 /pseudo
(575 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C71403 hypothetical 15.1K protein - Arabidopsis thaliana 198 3e-49
emb|CAB46002.1| hypothetical protein [Arabidopsis thaliana] gi|7... 169 2e-40
emb|CAE02100.2| OSJNBa0020I02.9 [Oryza sativa (japonica cultivar... 135 3e-30
emb|CAA55379.1| unnamed protein product [Chlamydia muridarum] gi... 39 0.35
ref|YP_214641.1| gp7 [Cyanophage P-SSM4] gi|61563826|gb|AAX46881... 38 0.77
emb|CAB96252.1| gp41 [Human immunodeficiency virus 1] 37 1.7
gb|EAM69955.1| DNA gyrase, subunit A [Desulfuromonas acetoxidans... 36 2.9
ref|ZP_00048988.2| COG0433: Predicted ATPase [Magnetospirillum m... 35 5.0
ref|NP_975380.1| Hypothetical transmembrane protein [Mycoplasma ... 35 6.5
ref|XP_645974.1| hypothetical protein DDB0190268 [Dictyostelium ... 35 8.5
>pir||C71403 hypothetical 15.1K protein - Arabidopsis thaliana
Length = 1361
Score = 198 bits (504), Expect = 3e-49
Identities = 115/234 (49%), Positives = 152/234 (64%), Gaps = 9/234 (3%)
Query: 1 MALASLEQYVLLNSSDSHNWTTDSLTVTRLVNLYSLLRGLGNMNYQIHYSREAEEIIFQL 60
+ LASLEQY++LN + +DS + LVNLY L R L N YQI YS EAE IIF L
Sbjct: 655 LVLASLEQYIILNKTSLICAISDSPALLNLVNLYGLCRSLQNERYQISYSLEAERIIFHL 714
Query: 61 INNGEWDLLSARIHTVSLKWLFQQENIINSLCHQILKFCRNNNLEGDDM--IIGNSNQTV 118
+N EWDL S IH SLKWLFQQE+I SL +QI K R NNL G+++ + G+ Q
Sbjct: 715 LNEYEWDLGSINIHLESLKWLFQQESISKSLIYQIQKISR-NNLIGNEVHNVYGDGRQRS 773
Query: 119 NVQTLAELVSSEDNYGARLFICLLAQLAEEEGQEHDIISVLNLMATMIHICPAASDQLSL 178
A+L+S DNY A L + LL QLAE+E QE+D+IS+LNLM T++ I P AS+ LS+
Sbjct: 774 LTYWFAKLISEGDNYAATLLVNLLTQLAEKEEQENDVISILNLMNTIVSIFPTASNNLSM 833
Query: 179 HGIGTTIRTCC--FSTA----TFMSILVLVFNTLSSVHPKTLSTDQSWVAVTME 226
+GIG+ I FS + +F ++L+LVFN L+SV P L D+SW AV+++
Sbjct: 834 NGIGSVIHRLVSGFSNSSLGTSFRTLLLLVFNILTSVQPAVLMIDESWYAVSIK 887
>emb|CAB46002.1| hypothetical protein [Arabidopsis thaliana]
gi|7268123|emb|CAB78460.1| hypothetical protein
[Arabidopsis thaliana] gi|15236434|ref|NP_193154.1|
expressed protein [Arabidopsis thaliana]
gi|25333913|pir||G85154 hypothetical protein dl3130w
[imported] - Arabidopsis thaliana
Length = 1268
Score = 169 bits (429), Expect = 2e-40
Identities = 98/197 (49%), Positives = 129/197 (64%), Gaps = 9/197 (4%)
Query: 38 RGLGNMNYQIHYSREAEEIIFQLINNGEWDLLSARIHTVSLKWLFQQENIINSLCHQILK 97
R L N YQI YS EAE IIF L+N EWDL S IH SLKWLFQQE+I SL +QI K
Sbjct: 661 RSLQNERYQISYSLEAERIIFHLLNEYEWDLGSINIHLESLKWLFQQESISKSLIYQIQK 720
Query: 98 FCRNNNLEGDDM--IIGNSNQTVNVQTLAELVSSEDNYGARLFICLLAQLAEEEGQEHDI 155
R NNL G+++ + G+ Q A+L+S DNY A L + LL QLAE+E QE+D+
Sbjct: 721 ISR-NNLIGNEVHNVYGDGRQRSLTYWFAKLISEGDNYAATLLVNLLTQLAEKEEQENDV 779
Query: 156 ISVLNLMATMIHICPAASDQLSLHGIGTTIRTCC--FSTA----TFMSILVLVFNTLSSV 209
IS+LNLM T++ I P AS+ LS++GIG+ I FS + +F ++L+LVFN L+SV
Sbjct: 780 ISILNLMNTIVSIFPTASNNLSMNGIGSVIHRLVSGFSNSSLGTSFRTLLLLVFNILTSV 839
Query: 210 HPKTLSTDQSWVAVTME 226
P L D+SW AV+++
Sbjct: 840 QPAVLMIDESWYAVSIK 856
Score = 37.7 bits (86), Expect = 1.0
Identities = 23/83 (27%), Positives = 44/83 (52%), Gaps = 2/83 (2%)
Query: 484 LTS*VLSKLQL*VKCCRKQMYTNNAQDGLPSEPIKKVLATSYDLGDVCWFLIDLMSPDTL 543
L S ++KL + CRKQM+ N +D E +++ + + +D + C +L+ LM ++
Sbjct: 1159 LNSQQVTKLDRAFQECRKQMHRNGTRDETVEEQVQRKIPSIHDHSEFCNYLVHLMVSNSF 1218
Query: 544 --DMDSWGIHMDGKRLLEEIELF 564
+S K++L+E+E F
Sbjct: 1219 GHPSESETYTQKKKQILDEMEQF 1241
>emb|CAE02100.2| OSJNBa0020I02.9 [Oryza sativa (japonica cultivar-group)]
gi|50923297|ref|XP_472009.1| OSJNBa0020I02.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1176
Score = 135 bits (341), Expect = 3e-30
Identities = 89/248 (35%), Positives = 144/248 (57%), Gaps = 12/248 (4%)
Query: 3 LASLEQYVLLNSSDSHNWTTDSLTVTRLVNLYSLLRGLGNMNYQIHYSREAEEIIFQLIN 62
LAS+EQY+LLN + + SL +T LV+LY+ +RG+ + + I +S EAE+ +F +
Sbjct: 557 LASVEQYILLNGAKFPHEIPGSLMLTLLVHLYAFVRGI-SFRFGIPHSPEAEKTLFHAMT 615
Query: 63 NGEWDLLSARIHTVSLKWLFQQENIINSLCHQILKFCRNNNLEGDDMIIGNSNQTVNVQT 122
+ EWDLL R+H ++LKWLFQ E ++ L +L FC+ E +++ +S Q V++Q
Sbjct: 616 HKEWDLLLIRVHLIALKWLFQNEELMEPLSFHLLNFCK-FFCEDRTVMLSSSTQLVDIQL 674
Query: 123 LAELVSSEDNYGARLFICLLAQLAEEEGQEHDIISVLNLMATMIHICPAASDQLSLHGI- 181
+AELV S + + L + LL+Q+ +E E +++SV+N++ ++ P SDQ GI
Sbjct: 675 IAELVYSGETCISSLLVSLLSQMIKESA-EDEVLSVVNVITEILVSFPCTSDQFVSCGIV 733
Query: 182 ---GTTIRTCCFSTATFMSILVLVFNTLSSVHPKTLS-TDQSWVAVTMESRKSLRHWHSF 237
G+ + C S + L L+FN L S T + D +W+A+TM K L ++S
Sbjct: 734 DALGSIYLSLCSSRIKSVCSL-LIFNILHSASAMTFTCDDDAWLALTM---KLLDCFNSS 789
Query: 238 LDFTSFHQ 245
L +TS Q
Sbjct: 790 LAYTSSEQ 797
>emb|CAA55379.1| unnamed protein product [Chlamydia muridarum]
gi|7190955|gb|AAF39716.1| virulence protein pGP6-D
[Chlamydia muridarum Nigg] gi|10957570|ref|NP_038282.1|
virulence protein pGP6-D [Chlamydia muridarum Nigg]
gi|628875|pir||S44166 hypothetical protein 8 - Chlamydia
trachomatis gi|12230089|sp|Q46442|GP6D_CHLMU Virulence
plasmid protein pGP6-D
Length = 246
Score = 39.3 bits (90), Expect = 0.35
Identities = 28/96 (29%), Positives = 48/96 (49%), Gaps = 5/96 (5%)
Query: 119 NVQTLAELVSSEDNYGA-RLFICLLAQLAEEEGQEHDIISVLNLMATMIHICPAASDQL- 176
+++ + ++SE+N RLF+ L++EE + D++SV L+ + I L
Sbjct: 29 SIEMFSTSLNSEENQSLDRLFLSETQNLSDEESYQEDVLSV-KLLTSQIKAIQKQHVLLL 87
Query: 177 --SLHGIGTTIRTCCFSTATFMSILVLVFNTLSSVH 210
++ + CFS+ TF S L LVF T SS +
Sbjct: 88 GEKIYNARKILSKSCFSSTTFSSWLDLVFRTKSSAY 123
>ref|YP_214641.1| gp7 [Cyanophage P-SSM4] gi|61563826|gb|AAX46881.1| gp7 [Cyanophage
P-SSM4]
Length = 7312
Score = 38.1 bits (87), Expect = 0.77
Identities = 20/60 (33%), Positives = 33/60 (54%), Gaps = 2/60 (3%)
Query: 11 LLNSSDSHNWTTDSLTVTRLVNLYSLLRGL--GNMNYQIHYSREAEEIIFQLINNGEWDL 68
L N S+SH WTT + + R N S+ G G++ +++ + E+I +INN WD+
Sbjct: 4529 LRNGSNSHIWTTSASYINRTTNPISIATGTIEGDVPQEVYATEIVEKISKFVINNVPWDI 4588
>emb|CAB96252.1| gp41 [Human immunodeficiency virus 1]
Length = 219
Score = 37.0 bits (84), Expect = 1.7
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 31 VNLYSLLRGLGNMNYQIHYSREAEEIIFQLINNGEWDLLSARIHTVSLKWLFQQENIINS 90
V ++L++G+ + + +A++ QL+ W + R ++L+ L Q + ++NS
Sbjct: 4 VRTHTLIKGIVQQQDNLLRAIQAQQ---QLLRLSVWGIRQLRARLLALETLIQNQQLLNS 60
Query: 91 -------LCHQILKFCRNNNLEGDDMIIGNSNQTVNVQTLAELVSSEDNYGARLFICLLA 143
+C+ +K+ NN +GD+ I GN T E DN + +F +L
Sbjct: 61 WGCKGRLVCYTSVKW--NNTWKGDEYIWGN-------LTWQEWDQQIDNVSSIIFDEILR 111
Query: 144 QLAEEEGQEHDIISV 158
++E E ++ +
Sbjct: 112 AQVQQEENERKLLEL 126
>gb|EAM69955.1| DNA gyrase, subunit A [Desulfuromonas acetoxidans DSM 684]
Length = 833
Score = 36.2 bits (82), Expect = 2.9
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 52 EAEEIIFQLINNGEWDLLSARIHTVSLKWLFQQENIINSLCHQILKFCRNNNLEGDDMII 111
E + ++ I +G D+L A H S+++ + + R LEGDD II
Sbjct: 643 EGDSLVATRITDGSMDVLLASHHGKSIRFAETDVRPMGRTARGV----RGMQLEGDDTII 698
Query: 112 GNSNQTVNVQTLAELVS-SEDNYGAR 136
G + VN T A LVS +E+ YG R
Sbjct: 699 G--MEVVNDNTSASLVSVTENGYGKR 722
>ref|ZP_00048988.2| COG0433: Predicted ATPase [Magnetospirillum magnetotacticum MS-1]
Length = 130
Score = 35.4 bits (80), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 207 SSVHPKTLSTDQSWVAVTMESRKSLRHWHSFLDFTSFH 244
SS+HP LS ++W + + LR F DF+ FH
Sbjct: 44 SSIHPNILSNTENWFVTHLNNEDELRALGKFYDFSDFH 81
>ref|NP_975380.1| Hypothetical transmembrane protein [Mycoplasma mycoides subsp.
mycoides SC str. PG1] gi|42492426|emb|CAE77022.1|
Hypothetical transmembrane protein [Mycoplasma mycoides
subsp. mycoides SC]
Length = 275
Score = 35.0 bits (79), Expect = 6.5
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 19 NWTTDSLTVTRLVNLYSLLRGLGNMNYQIHYSREAEEIIFQLINNGEWDLLSARIHTVSL 78
N+ + SL + VN Y + + ++HY+ E +++ + E+D +ARI+ + +
Sbjct: 191 NYLSFSLIICLFVNYYISI--IIKNKIELHYNDEVSKLVSSALEMYEYDFKAARIYALGI 248
Query: 79 KWLF 82
KW +
Sbjct: 249 KWTY 252
>ref|XP_645974.1| hypothetical protein DDB0190268 [Dictyostelium discoideum]
gi|60474134|gb|EAL72071.1| hypothetical protein
DDB0190268 [Dictyostelium discoideum]
Length = 923
Score = 34.7 bits (78), Expect = 8.5
Identities = 17/49 (34%), Positives = 27/49 (54%), Gaps = 2/49 (4%)
Query: 86 NIINSLCHQILKFCRNNNLEGDDMIIGNSNQTVN--VQTLAELVSSEDN 132
N++N C+ I NNN+ DD+ I +SN ++ + T + SS DN
Sbjct: 254 NLLNYSCNNINNINNNNNIINDDININDSNNSIQNAINTFNSINSSNDN 302
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.349 0.152 0.538
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 837,765,959
Number of Sequences: 2540612
Number of extensions: 30482502
Number of successful extensions: 137494
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 137478
Number of HSP's gapped (non-prelim): 14
length of query: 575
length of database: 863,360,394
effective HSP length: 134
effective length of query: 441
effective length of database: 522,918,386
effective search space: 230607008226
effective search space used: 230607008226
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 78 (34.7 bits)
Medicago: description of AC147484.13