BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147483.2 + phase: 0
(384 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK76703.1| unknown protein [Arabidopsis thaliana] 195 2e-48
emb|CAB16817.1| putative protein [Arabidopsis thaliana] gi|72706... 195 2e-48
dbj|BAD81134.1| unknown protein [Oryza sativa (japonica cultivar... 152 1e-35
gb|AAM91683.1| unknown protein [Arabidopsis thaliana] gi|1934773... 127 6e-28
emb|CAB79010.1| putative protein [Arabidopsis thaliana] gi|28276... 125 2e-27
emb|CAG87359.1| unnamed protein product [Debaryomyces hansenii C... 73 1e-11
ref|XP_657499.1| PQ loop repeat protein [Entamoeba histolytica H... 69 2e-10
emb|CAE62849.1| Hypothetical protein CBG07028 [Caenorhabditis br... 69 2e-10
gb|EAL85896.1| PQ loop repeat protein [Aspergillus fumigatus Af293] 68 4e-10
gb|AAK39328.2| Hypothetical protein Y43H11AL.2 [Caenorhabditis e... 68 4e-10
gb|AAS53976.1| AFR605Cp [Ashbya gossypii ATCC 10895] gi|45199123... 68 4e-10
ref|XP_322386.1| hypothetical protein [Neurospora crassa] gi|289... 68 4e-10
emb|CAI22229.1| novel protein [Homo sapiens] gi|34526918|dbj|BAC... 68 5e-10
emb|CAH01215.1| unnamed protein product [Kluyveromyces lactis NR... 68 5e-10
gb|AAS51122.1| ACL106Cp [Ashbya gossypii ATCC 10895] gi|45185582... 68 5e-10
emb|CAG77823.1| unnamed protein product [Yarrowia lipolytica CLI... 67 9e-10
emb|CAG85464.1| unnamed protein product [Debaryomyces hansenii C... 67 1e-09
emb|CAG60520.1| unnamed protein product [Candida glabrata CBS138... 67 1e-09
emb|CAG62038.1| unnamed protein product [Candida glabrata CBS138... 66 2e-09
gb|AAD12006.1| hypothetical protein [Arabidopsis thaliana] gi|74... 66 2e-09
>gb|AAK76703.1| unknown protein [Arabidopsis thaliana]
Length = 392
Score = 195 bits (495), Expect = 2e-48
Identities = 85/121 (70%), Positives = 105/121 (86%)
Query: 5 YCVKENKECVKWVETYFKDCLCNLRDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGI 64
YC+KE K CV+WVE YF DCLCNL DD+SF+LG+ SL+ WGVAEIPQ+IT FR KSS+G+
Sbjct: 6 YCLKEKKTCVRWVEIYFDDCLCNLNDDVSFALGIASLLCWGVAEIPQVITNFRTKSSNGV 65
Query: 65 SLAFLLTWVAGDICNLVGCLLEPATLPTQFYTALLYASTTIILLLQIVYYDHILRWCKHR 124
SL+FLL WVAGDI NLVGCLLEPATLPTQFYTALLY +T++L++Q +YYD+I + C+HR
Sbjct: 66 SLSFLLAWVAGDIFNLVGCLLEPATLPTQFYTALLYTVSTVVLVIQTIYYDYIYKLCRHR 125
Query: 125 Q 125
+
Sbjct: 126 R 126
>emb|CAB16817.1| putative protein [Arabidopsis thaliana] gi|7270634|emb|CAB80351.1|
putative protein [Arabidopsis thaliana]
gi|42567473|ref|NP_568009.2| PQ-loop repeat family
protein / transmembrane family protein [Arabidopsis
thaliana] gi|25407768|pir||B85435 hypothetical protein
AT4g36850 [imported] - Arabidopsis thaliana
Length = 374
Score = 195 bits (495), Expect = 2e-48
Identities = 85/121 (70%), Positives = 105/121 (86%)
Query: 5 YCVKENKECVKWVETYFKDCLCNLRDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGI 64
YC+KE K CV+WVE YF DCLCNL DD+SF+LG+ SL+ WGVAEIPQ+IT FR KSS+G+
Sbjct: 6 YCLKEKKTCVRWVEIYFDDCLCNLNDDVSFALGIASLLCWGVAEIPQVITNFRTKSSNGV 65
Query: 65 SLAFLLTWVAGDICNLVGCLLEPATLPTQFYTALLYASTTIILLLQIVYYDHILRWCKHR 124
SL+FLL WVAGDI NLVGCLLEPATLPTQFYTALLY +T++L++Q +YYD+I + C+HR
Sbjct: 66 SLSFLLAWVAGDIFNLVGCLLEPATLPTQFYTALLYTVSTVVLVIQTIYYDYIYKLCRHR 125
Query: 125 Q 125
+
Sbjct: 126 R 126
>dbj|BAD81134.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 420
Score = 152 bits (385), Expect = 1e-35
Identities = 67/113 (59%), Positives = 87/113 (76%)
Query: 13 CVKWVETYFKDCLCNLRDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTW 72
C KW +TY K CLC+ RD ++ +LGL+S++SWGVAE+PQIIT +++KS+ G+SLAFL+TW
Sbjct: 20 CAKWAQTYLKYCLCSTRDGMALTLGLLSVISWGVAEVPQIITNYKHKSTEGLSLAFLMTW 79
Query: 73 VAGDICNLVGCLLEPATLPTQFYTALLYASTTIILLLQIVYYDHILRWCKHRQ 125
+ GD NL+GC LEP TLPTQFY ALLY TT+IL Q VYY HI K ++
Sbjct: 80 IVGDFFNLIGCFLEPETLPTQFYMALLYTITTVILTGQTVYYSHIYHRLKAKK 132
>gb|AAM91683.1| unknown protein [Arabidopsis thaliana] gi|19347739|gb|AAL86295.1|
unknown protein [Arabidopsis thaliana]
gi|30688510|ref|NP_850340.1| PQ-loop repeat family
protein / transmembrane family protein [Arabidopsis
thaliana]
Length = 376
Score = 127 bits (319), Expect = 6e-28
Identities = 58/100 (58%), Positives = 78/100 (78%)
Query: 27 NLRDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLLE 86
+ RD +S SLG++S++SWGVAEIPQI+T + KS+ G+S+ FL TW+ GDI NL+GCL+E
Sbjct: 6 SFRDGLSLSLGIISVISWGVAEIPQIMTNYSEKSTEGLSITFLTTWMIGDIFNLLGCLME 65
Query: 87 PATLPTQFYTALLYASTTIILLLQIVYYDHILRWCKHRQN 126
PATLPTQFY ALLY TT +L +Q +YY HI K+R++
Sbjct: 66 PATLPTQFYMALLYTVTTSVLYVQSIYYGHIYPRLKNRRD 105
>emb|CAB79010.1| putative protein [Arabidopsis thaliana] gi|2827664|emb|CAA16618.1|
putative protein [Arabidopsis thaliana]
gi|15235292|ref|NP_193743.1| PQ-loop repeat family
protein / transmembrane family protein [Arabidopsis
thaliana] gi|7459569|pir||T04894 hypothetical protein
F18F4.200 - Arabidopsis thaliana
Length = 288
Score = 125 bits (314), Expect = 2e-27
Identities = 57/100 (57%), Positives = 78/100 (78%), Gaps = 1/100 (1%)
Query: 28 LRDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLLEP 87
+RDD+S SLG++S++SW VAEIPQI+T + KS G+S+ FL TW+ GDI N+VGCL+EP
Sbjct: 2 IRDDLSLSLGIISVISWSVAEIPQIMTNYNQKSIEGVSITFLTTWMLGDIFNVVGCLMEP 61
Query: 88 ATLPTQFYTALLYASTTIILLLQIVYYDHIL-RWCKHRQN 126
A+LP QFYTA+LY T++L +Q +YY HI R K+R+N
Sbjct: 62 ASLPVQFYTAVLYTLATLVLYVQSIYYGHIYPRLMKNRRN 101
>emb|CAG87359.1| unnamed protein product [Debaryomyces hansenii CBS767]
gi|50421283|ref|XP_459188.1| unnamed protein product
[Debaryomyces hansenii]
Length = 352
Score = 73.2 bits (178), Expect = 1e-11
Identities = 37/92 (40%), Positives = 50/92 (54%)
Query: 26 CNLRDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLL 85
C+ IS SL ++SL SW A++PQI +RNKS+ GIS FLL W GD + CLL
Sbjct: 4 CSQFSFISSSLSILSLSSWVWAQLPQIYCNYRNKSAEGISPLFLLLWFMGDFLSFTSCLL 63
Query: 86 EPATLPTQFYTALLYASTTIILLLQIVYYDHI 117
L Q Y +L + + L Q YY+ +
Sbjct: 64 NDVVLKFQVYLSLFFLCNDVTLCYQYYYYNSV 95
>ref|XP_657499.1| PQ loop repeat protein [Entamoeba histolytica HM-1:IMSS]
gi|56474752|gb|EAL52109.1| PQ loop repeat protein
[Entamoeba histolytica HM-1:IMSS]
Length = 320
Score = 69.3 bits (168), Expect = 2e-10
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 7 VKENKECVKWVETYFKDCLCNLRDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISL 66
+++ E ++ Y +C + D S+ GL+++ W A+ PQ+ F+ K +S+
Sbjct: 7 IEDGIEAIEIFRKYTHNCFYDGLDVTSYIFGLINIGFWMCAQFPQLYKTFKTKKPESLSI 66
Query: 67 AFLLTWVAGDICNLVGCLLEPATLPTQFYTALLYASTTIILLLQIVYYDHILRWCKHRQN 126
FL+ W+ GDI NL+GC+ T Q T++ + II+L Q +Y I R H+++
Sbjct: 67 TFLVMWLGGDITNLLGCIFTDQT-QVQLLTSVYFVLIDIIMLSQYAWYLLICRKKYHKED 125
Score = 40.0 bits (92), Expect = 0.12
Identities = 26/93 (27%), Positives = 43/93 (45%), Gaps = 9/93 (9%)
Query: 49 IPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLLEPATL--PTQFYTALLYA----- 101
IPQII I+R K+ G+S+ + +I + + L PT + L Y
Sbjct: 223 IPQIIHIYRTKNVDGLSILLFIMATIANIFYSLSLFISGIDLTDPTFYEAKLAYIIGSFF 282
Query: 102 --STTIILLLQIVYYDHILRWCKHRQNVKSKLL 132
+++++ Q YY +I W HR++ K LL
Sbjct: 283 VIPMSLVVIAQYYYYKYIKNWWIHRKDEKQPLL 315
>emb|CAE62849.1| Hypothetical protein CBG07028 [Caenorhabditis briggsae]
Length = 310
Score = 68.9 bits (167), Expect = 2e-10
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 8 KENKEC---VKWVETYFKDCLCNLRDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGI 64
+E+ C ++W++ F DC+ + F +GL+SL W + PQ+ ++ K G+
Sbjct: 14 EEDANCTQGIQWIKNVFTDCVDTDLKLLGFIIGLISLALWLIPLFPQLWQNYKTKKCEGL 73
Query: 65 SLAFLLTWVAGDICNLVGCLLEPATLPTQFYTALLYASTTIILLLQIVYY 114
SLAFL W+ GD CN++G +L P Q + Y +IL Q YY
Sbjct: 74 SLAFLFFWLVGDTCNMLGAILTNQQ-PIQKIIGVYYIFQDLILWAQYGYY 122
>gb|EAL85896.1| PQ loop repeat protein [Aspergillus fumigatus Af293]
Length = 391
Score = 68.2 bits (165), Expect = 4e-10
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 30 DDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLLEPAT 89
D +S G +S+ W V PQII FR S+ G+SL FL+ W+AGD+ N++G +L+
Sbjct: 12 DALSGICGSISIACWVVVFSPQIIENFRRGSADGLSLLFLVVWLAGDVFNILGAVLQ-GV 70
Query: 90 LPTQFYTALLYASTTIILLLQIVYY 114
LPT A+ Y I+LL Q YY
Sbjct: 71 LPTMIILAVYYTLADIVLLGQCFYY 95
>gb|AAK39328.2| Hypothetical protein Y43H11AL.2 [Caenorhabditis elegans]
gi|32564589|ref|NP_493686.2| Cystinosin/ERS1p repeat
(35.0 kD) (2A514C) [Caenorhabditis elegans]
Length = 311
Score = 68.2 bits (165), Expect = 4e-10
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 8 KENKEC---VKWVETYFKDCLCNLRDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGI 64
+E+ C ++W++ F DC+ + F +GL+SL W + PQ+ ++ K G+
Sbjct: 14 EEDANCTQGIQWIKDVFTDCVDTDLKLLGFIIGLISLALWLIPLFPQLWQNYKTKKCEGL 73
Query: 65 SLAFLLTWVAGDICNLVGCLLEPATLPTQFYTALLYASTTIILLLQIVYY 114
SLAFL W+ GD CN++G +L P Q + Y ++L Q YY
Sbjct: 74 SLAFLFFWLVGDTCNMLGAILTNQQ-PIQKIIGVYYIIQDLVLWTQYGYY 122
>gb|AAS53976.1| AFR605Cp [Ashbya gossypii ATCC 10895] gi|45199123|ref|NP_986152.1|
AFR605Cp [Eremothecium gossypii]
Length = 315
Score = 68.2 bits (165), Expect = 4e-10
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 30 DDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLLEPAT 89
+ IS G +S+ W + +PQI FR KS+ G+SL F++ W+AGDI NL+G +L+
Sbjct: 9 ETISGITGSISIACWVIVFVPQIYENFRRKSAEGLSLLFVVLWLAGDIFNLLGAILQ-HL 67
Query: 90 LPTQFYTALLYASTTIILLLQIVYY 114
LPT A Y I+L Q V+Y
Sbjct: 68 LPTMIVLAAYYTVADIVLWFQCVFY 92
>ref|XP_322386.1| hypothetical protein [Neurospora crassa] gi|28918866|gb|EAA28535.1|
hypothetical protein [Neurospora crassa]
Length = 538
Score = 68.2 bits (165), Expect = 4e-10
Identities = 33/83 (39%), Positives = 49/83 (58%), Gaps = 1/83 (1%)
Query: 32 ISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLLEPATLP 91
IS LG +S+ W V PQII FR S+ G+S+ F++ W+ GD+ N++G +L+ LP
Sbjct: 15 ISGILGSVSIACWVVVFSPQIIENFRRSSADGLSIQFIIIWLTGDVFNILGAVLQ-GVLP 73
Query: 92 TQFYTALLYASTTIILLLQIVYY 114
T A+ Y ++LL Q YY
Sbjct: 74 TMLILAIYYTIADVVLLAQCFYY 96
>emb|CAI22229.1| novel protein [Homo sapiens] gi|34526918|dbj|BAC85296.1| unnamed
protein product [Homo sapiens]
Length = 291
Score = 67.8 bits (164), Expect = 5e-10
Identities = 39/122 (31%), Positives = 61/122 (49%), Gaps = 2/122 (1%)
Query: 14 VKWVETYFKDCLCNLRDDISFSLGLMSLVSWGVAEIPQIITIFRNKS-SHGISLAFLLTW 72
++W+ +C + D+ S LGL+S++ + + PQ I ++ + +SL FLL W
Sbjct: 19 IQWIWDVLGECAQDGWDEASVGLGLISILCFAASTFPQFIKAYKTGNMDQALSLWFLLGW 78
Query: 73 VAGDICNLVGCLLEPATLPTQFYTALLYASTTIILLLQIVYYDHILRWCKHRQNVKSKLL 132
+ GD CNL+G L LP Q YTA+ Y +++L YY R + S LL
Sbjct: 79 IGGDSCNLIGSFLAD-QLPLQTYTAVYYVLADLVMLTLYFYYKFRTRPSLLSAPINSVLL 137
Query: 133 LL 134
L
Sbjct: 138 FL 139
>emb|CAH01215.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
gi|50304817|ref|XP_452364.1| unnamed protein product
[Kluyveromyces lactis]
Length = 306
Score = 67.8 bits (164), Expect = 5e-10
Identities = 34/83 (40%), Positives = 51/83 (60%), Gaps = 1/83 (1%)
Query: 32 ISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLLEPATLP 91
+S G +S+ W + +PQI F KS+ G+SL F++ W+AGDI NL+G +L+ LP
Sbjct: 13 VSGITGSISIACWIIVFVPQIYENFYRKSAEGLSLMFVVLWLAGDIFNLLGAMLQ-HLLP 71
Query: 92 TQFYTALLYASTTIILLLQIVYY 114
T A Y + IILL+Q ++Y
Sbjct: 72 TMIILAAYYTAADIILLIQCLFY 94
>gb|AAS51122.1| ACL106Cp [Ashbya gossypii ATCC 10895] gi|45185582|ref|NP_983298.1|
ACL106Cp [Eremothecium gossypii]
Length = 273
Score = 67.8 bits (164), Expect = 5e-10
Identities = 39/98 (39%), Positives = 54/98 (54%), Gaps = 3/98 (3%)
Query: 23 DCLCNLRDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVG 82
DC + IS + G++S + VA IPQ++ ++ KS G+S LL W++GDI LVG
Sbjct: 6 DCAATIWPVISIASGVVSFTTSLVASIPQVVETYKEKSVDGLSPLCLLCWISGDITTLVG 65
Query: 83 CLLEPATLPTQFYTALLYASTTIILLLQIVYYDHILRW 120
+L LP Q A Y ST +IL Q YY +RW
Sbjct: 66 AIL-THQLPFQIIQAFYYFSTDLILCYQYYYYG--VRW 100
>emb|CAG77823.1| unnamed protein product [Yarrowia lipolytica CLIB99]
gi|50555215|ref|XP_505016.1| hypothetical protein
[Yarrowia lipolytica]
Length = 278
Score = 67.0 bits (162), Expect = 9e-10
Identities = 32/85 (37%), Positives = 52/85 (60%), Gaps = 1/85 (1%)
Query: 32 ISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLLEPATLP 91
+S +G +S+ W + PQI F+ +SS G+SL+F++ W+ GDI N++G +L+ +P
Sbjct: 20 LSGIMGCISIACWIIVFTPQIYENFKRQSSEGLSLSFVVIWLIGDIFNVLGAILQ-KIIP 78
Query: 92 TQFYTALLYASTTIILLLQIVYYDH 116
T A+ Y I+LLLQ + Y H
Sbjct: 79 TMIILAIYYTLADILLLLQCLVYTH 103
>emb|CAG85464.1| unnamed protein product [Debaryomyces hansenii CBS767]
gi|50415254|ref|XP_457460.1| unnamed protein product
[Debaryomyces hansenii]
Length = 320
Score = 66.6 bits (161), Expect = 1e-09
Identities = 33/83 (39%), Positives = 49/83 (58%), Gaps = 1/83 (1%)
Query: 32 ISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLLEPATLP 91
+S G +SL W + PQI FR KSS G+SL F++ W+AGD+ N++G +L+ LP
Sbjct: 14 VSGITGSISLACWIIVFAPQIYENFRRKSSDGLSLLFIILWLAGDVFNVLGSILQ-GVLP 72
Query: 92 TQFYTALLYASTTIILLLQIVYY 114
T A+ Y ++LL Q + Y
Sbjct: 73 TMIILAIYYTLADVVLLWQCLVY 95
>emb|CAG60520.1| unnamed protein product [Candida glabrata CBS138]
gi|50290303|ref|XP_447583.1| unnamed protein product
[Candida glabrata]
Length = 309
Score = 66.6 bits (161), Expect = 1e-09
Identities = 33/85 (38%), Positives = 52/85 (60%), Gaps = 1/85 (1%)
Query: 32 ISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLLEPATLP 91
+S G +S+ W V +PQI F KS+ G+SL F++ W+AGD+ NLVG +++ L
Sbjct: 14 VSGIAGSVSIACWVVVFVPQIYENFYRKSADGLSLLFVVLWLAGDVFNLVGAMMQHLLL- 72
Query: 92 TQFYTALLYASTTIILLLQIVYYDH 116
T A Y + +ILL+Q ++YD+
Sbjct: 73 TMVILAAYYTAADVILLIQCLWYDN 97
>emb|CAG62038.1| unnamed protein product [Candida glabrata CBS138]
gi|50293313|ref|XP_449068.1| unnamed protein product
[Candida glabrata]
Length = 329
Score = 66.2 bits (160), Expect = 2e-09
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 29 RDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLLEPA 88
R +S G +S+ W V PQI FR KSS G+SL F++ W+ GDI N+VG +++
Sbjct: 10 RRTVSEIAGSISIACWVVVFAPQIYENFRRKSSDGLSLMFIILWLIGDIFNIVGAIMQ-N 68
Query: 89 TLPTQFYTALLYASTTIILLLQIVYYD 115
LPT A Y IIL Q ++Y+
Sbjct: 69 LLPTMIILAAYYTVADIILWFQCIWYN 95
>gb|AAD12006.1| hypothetical protein [Arabidopsis thaliana]
gi|7487622|pir||T02114 hypothetical protein At2g41050
[imported] - Arabidopsis thaliana
Length = 219
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/62 (48%), Positives = 43/62 (68%)
Query: 27 NLRDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLLE 86
+ RD +S SLG++S++SWGVAEIPQI+T + KS+ G+S+ FL TW+ G +L
Sbjct: 6 SFRDGLSLSLGIISVISWGVAEIPQIMTNYSEKSTEGLSITFLTTWMIGSARSLSSSHTP 65
Query: 87 PA 88
PA
Sbjct: 66 PA 67
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.354 0.155 0.589
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,930,892
Number of Sequences: 2540612
Number of extensions: 21020678
Number of successful extensions: 88806
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 88627
Number of HSP's gapped (non-prelim): 171
length of query: 384
length of database: 863,360,394
effective HSP length: 130
effective length of query: 254
effective length of database: 533,080,834
effective search space: 135402531836
effective search space used: 135402531836
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 76 (33.9 bits)
Medicago: description of AC147483.2