BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147483.10 - phase: 0
(2245 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 2328 0.0
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 1643 0.0
ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica... 903 0.0
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 768 0.0
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 765 0.0
gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sati... 756 0.0
ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultiva... 700 0.0
gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonic... 700 0.0
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 699 0.0
ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cu... 699 0.0
ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultiva... 696 0.0
ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultiv... 696 0.0
ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (jap... 693 0.0
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18... 693 0.0
gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cul... 692 0.0
gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonic... 691 0.0
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva... 691 0.0
ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cu... 690 0.0
ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultiva... 684 0.0
gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultiva... 682 0.0
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 2328 bits (6033), Expect = 0.0
Identities = 1225/2320 (52%), Positives = 1578/2320 (67%), Gaps = 141/2320 (6%)
Query: 7 QLRTELASLKEELAKANDVMTALLAAQEQSATAIPTTTAAPVTTSVLPTTSADNRFTMPV 66
Q++TELA ++ +A+ +M + QE+ + A T N+ +P
Sbjct: 3 QVQTELAEMRANMAQFMHMMQGVAQGQEELRALVQRQEAV---------TPPPNQ-ALPE 52
Query: 67 GFP-YGLPPFFTPVATASTSGTANNVLIP----ATNAASIIATLPQTTAAVTEPLVHILP 121
G P + P PV + + + A +AA+ A + A P+V
Sbjct: 53 GNPVHDTPAAAIPVNNYAVGEELMGIRVDGQPIAPDAAN--ARVIHAPARNRIPIVDRQE 110
Query: 122 QGININTQHRSIPVTK-TMEEMMEELAKELRH-EIQANRGSADSVKTQDLCLVSKVDVPK 179
+ ++ IP + ++ LA+++R E Q + G ++ LV + +P
Sbjct: 111 DLFTMFSEDEDIPGRNDARDRKVDALAEKIRAMECQNSLG----FDVTNMGLVEGLRIPY 166
Query: 180 KFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKND 239
KFK P FD+YNG +CP+ H+ Y RK+ Y D++ + ++ FQDSL + +WY L +
Sbjct: 167 KFKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKSDS 226
Query: 240 IHTFDELATAFKSHYGFNTRLRPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEE 299
I + +L AF Y N + P+R L+SL QK ESF+EYAQRWR AAR+ P + E
Sbjct: 227 IRCWRDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSNESFKEYAQRWRELAARVQPPMLER 286
Query: 300 EMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESSVNASKRY 359
E+T F+ TL+ +++RM +FS++V G R E ++ G I + ++SK+
Sbjct: 287 ELTDMFIGTLQGVFMDRMGSCPFGSFSDVVICGERTESLIKTGKI----QDVGSSSSKKP 342
Query: 360 GNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYMPYSQHPFFPPFYHQYPLPP 419
G +++E E V Q+ A +P P Q P
Sbjct: 343 FAGAPRRREGETNAVQHRRDQNRIEYRQAAAVTIPAPQPRQQQQQRVQQP---------- 392
Query: 420 GQPQVPVNAIAQQMKQQMPVQQQQQNQQARPTFPPIPMLYAELLPTLLQRGH---CTTRQ 476
QQ +QQ P Q +Q+ R F +PM YAELLP LL+ G CT
Sbjct: 393 -----------QQQQQQRPYQPRQRMPDRR--FDSLPMSYAELLPELLRLGLVELCTMA- 438
Query: 477 GKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDN 536
PP LPP + ++++CDFH GA GH E C AL++ V+ LID + F VP+V++N
Sbjct: 439 ---PPTVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDANAINFAP-VPNVVNN 494
Query: 537 PLPNHAV--VNMIEVCEEAPRLD-VRNVATPLVPLHIKLCKASLFNHDHAKCLGCLRDPL 593
P+P H VN IE E +D V +V T L+ + +L +++ CLGC
Sbjct: 495 PMPQHGGHRVNNIEGKEAEDLVDNVDDVQTSLLVVKSRLLNEGVYSGCDEDCLGCAESEN 554
Query: 594 GCHAVQDDIQSLMNDNLL----------TVSDVCVI-------------VPVFHDPPVKS 630
GC ++ IQ +M++ L TVS + + P + PV
Sbjct: 555 GCDQLRAGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPSEGHGQRVVSAPATNGTPVTI 614
Query: 631 VTLKKNAEPLVIRLPGPIPYVSDKAVPYKY-----------------NATMIENGV--EV 671
+ P I G + +AVP+KY N T + G+ V
Sbjct: 615 PVPVTISAPTTIVASGRRAVENSRAVPWKYDNAYRSNRRVESQTKPVNQTPVTIGLANRV 674
Query: 672 PLASFATVSNIAEGTSAALRSGKVRPPLFQKKVATPTIPPVEEATPTVVSPIATDVNQSG 731
P V N+ G RSG++ P + + + V G
Sbjct: 675 PATVGPAVDNVG-GPGGFTRSGRLFAPQPLRDNNAEALAKAKGKQAVVEEEPVQKEAPEG 733
Query: 732 KSIEDSNLDEILRIIKRSDYKIVDQLLQTPSKISVLSLLLSSEAHRNTLLKVLEQAYVDH 791
+D ++E +++IK+SDYKIVDQL QTPSKIS+LSLLL SEAHRN LLK+L AYV
Sbjct: 734 SFEKD--VEEFMKMIKKSDYKIVDQLNQTPSKISILSLLLCSEAHRNALLKMLNLAYVPQ 791
Query: 792 EVTVDRFGGIVGNITACNNLWFSEEELPEVGKSHNLALHISVNCKSDMISNVLVDTGSSL 851
E++V++ G++ N++ + + F+ +LP G++HN ALHI++ CK ++S+VLVDTGSSL
Sbjct: 792 EISVNQLEGVMANVSTRHGVGFTNLDLPPEGRNHNKALHITMECKGAVLSHVLVDTGSSL 851
Query: 852 NVMPKTTLDQLSYRGTPLRRSTFLVKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDIN 911
NV+PK L ++ G L S +V+AFD S+++V GE+ LP+ IGPE F + F VMDI
Sbjct: 852 NVLPKQILKKIDVEGFVLTPSDLIVRAFDRSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQ 911
Query: 912 ASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGEEAYLVSQLSSFSCIEA-GSA 970
+YSCLLGRPWIH AGAV+STLHQKLK+V NG++VT+ GEE LVS LSSF +E G
Sbjct: 912 PAYSCLLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEI 971
Query: 971 EGT---AFQGLTIEG---AEPKKAGAAMASLKDAQRAVQEGQAAGWGKVIQLCENKRKEG 1024
T F+ + +E AE +K G ++ S K A+ V G+A GWGK++ L + K G
Sbjct: 972 HETLCQVFETVALEKVAYAEQRKPGVSITSYKQAKEVVDSGKAEGWGKMVDLPVKEDKFG 1031
Query: 1025 LGFSPSSRVSSG-----VFHSAGFVNAISEEATGSG-----------LRPVFVTPGGIAT 1068
+G+ P +G F SAG +N ATGS +RP PGG
Sbjct: 1032 VGYEPLQAEQNGQAGPSTFTSAGLMNHGDVSATGSEDCDSDCDLDNWVRPC--APGGSIN 1089
Query: 1069 DWDAIDIPSIMHVSELNHNKPVEHSNPTVPPSFDFPGYEAEDEESND--IPYEITRLLEQ 1126
+W A ++ + ++E + + + FD P Y+AE+E D +P E+ RLL+Q
Sbjct: 1090 NWTAEEVVQVTLLTESDLMAFTMNGSVIAQYDFDNPIYQAEEESEEDCELPAELVRLLKQ 1149
Query: 1127 EKKAIQSHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPG 1186
E++ IQ HQEE+E++N+GTE+ REIKIGA LE+ VK+++I++LREY +IFAWSY+DMPG
Sbjct: 1150 EERVIQPHQEELEVVNLGTEDATREIKIGAALEDSVKRRLIEMLREYVEIFAWSYQDMPG 1209
Query: 1187 LDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIV 1246
LD IV HR+P + CP V+QKLRRT PDMA KIK EVQKQ DAGFL YP W+ANIV
Sbjct: 1210 LDTDIVVHRLPLREGCPSVKQKLRRTSPDMATKIKEEVQKQWDAGFLAVTSYPPWMANIV 1269
Query: 1247 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1306
PVPKKDGKVRMCVD+RDLN+ASPKD+FPLPHIDVLVDNTAQS VFSFMDGFSGYNQIKM+
Sbjct: 1270 PVPKKDGKVRMCVDYRDLNRASPKDDFPLPHIDVLVDNTAQSSVFSFMDGFSGYNQIKMA 1329
Query: 1307 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST 1366
PED EKT+FITPWGTFCYKVMPFGL NAGATYQR MTTLFHDM+HKE+EVYVDDMI KS
Sbjct: 1330 PEDMEKTTFITPWGTFCYKVMPFGLKNAGATYQRAMTTLFHDMMHKEIEVYVDDMIAKSQ 1389
Query: 1367 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1426
EE+H+ L K+F+RLRK+KLRLNPNKCTFGVRSGKLLGFIVS+KGIEVDP KV+AI+EM
Sbjct: 1390 TEEEHLVNLQKLFDRLRKFKLRLNPNKCTFGVRSGKLLGFIVSEKGIEVDPAKVKAIQEM 1449
Query: 1427 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYL 1486
P P+TEKQVRGFLGRLNYI+RFISH+TATC PIFKLLRKNQ + WND+CQ+AFD IK YL
Sbjct: 1450 PEPKTEKQVRGFLGRLNYIARFISHLTATCEPIFKLLRKNQAIKWNDDCQKAFDKIKEYL 1509
Query: 1487 LEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTML 1546
+PPIL+PPV GRPLIMYL+V + SMGCVLG+ DE+G+KEHAIYYLSKKFTDCETRY++L
Sbjct: 1510 QKPPILIPPVPGRPLIMYLSVTENSMGCVLGRHDESGRKEHAIYYLSKKFTDCETRYSLL 1569
Query: 1547 EKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFK 1606
EKTCCALAWAA+RLR Y++NHTT LIS+MDP+KYIFEK A+TG++ARWQM+L+EYDI +
Sbjct: 1570 EKTCCALAWAARRLRQYMLNHTTLLISKMDPVKYIFEKPALTGRVARWQMILTEYDIQYT 1629
Query: 1607 TQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLV 1666
+QKAIKGSIL+D+LA QP++DYQP+ F+FPDE+IMYLK KDC+EPL+ EGPDP+ KW L+
Sbjct: 1630 SQKAIKGSILSDYLAEQPIEDYQPMMFEFPDEDIMYLKMKDCKEPLVEEGPDPDDKWTLM 1689
Query: 1667 FDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLD 1726
FDGAVN G G+GAV+++P+G H+PF+AR+ F+ TNN AEYEACI GIEEAID+RIK LD
Sbjct: 1690 FDGAVNMNGNGVGAVLINPKGAHMPFSARLTFDVTNNEAEYEACIMGIEEAIDLRIKTLD 1749
Query: 1727 IYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLS 1786
I+GDSALV+NQ+ G+W T+ LIPYRDY RR+LT+F KV+L+H+PRDENQMADALATLS
Sbjct: 1750 IFGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVKLYHVPRDENQMADALATLS 1809
Query: 1787 SMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDCKPWYYDIKQFLLSREYPP 1846
SM +VN WN VP + V RLERP++VFA V V+D KPWYYDIK FL ++EYP
Sbjct: 1810 SMIKVNWWNHVPHVAVNRLERPAYVFAAESV-------VIDEKPWYYDIKNFLKTQEYPE 1862
Query: 1847 GASKQDKKTLRRLASRFLLD-GDVLYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHAT 1905
GASK DKKTLRRLA F L+ DVLYKRN+DMVLLRC+D EA+ LM +VH+G+FGTHA
Sbjct: 1863 GASKNDKKTLRRLAGSFYLNQDDVLYKRNFDMVLLRCMDRPEADMLMQEVHEGSFGTHAG 1922
Query: 1906 GHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGI 1965
GH M++KLLRAGYYWM ME DC++YARKCHKCQIYAD++HVPP LNV++SPWPF+MWGI
Sbjct: 1923 GHAMAKKLLRAGYYWMTMESDCFKYARKCHKCQIYADRVHVPPSPLNVMNSPWPFAMWGI 1982
Query: 1966 DMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKII 2025
DMIG+IEP ASNGHRFILVAIDYFTKWVEAASY N+TKQVV +FIK IICRYGVP +II
Sbjct: 1983 DMIGKIEPTASNGHRFILVAIDYFTKWVEAASYANITKQVVTRFIKKEIICRYGVPERII 2042
Query: 2026 TDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKDWHE 2085
TDNG+NLNN +++ LC++FKIEHHNSSPYRP+MNGAVEAANKNIK+IV+KMV TYKDWHE
Sbjct: 2043 TDNGSNLNNKMMKELCKDFKIEHHNSSPYRPKMNGAVEAANKNIKKIVRKMVVTYKDWHE 2102
Query: 2086 MLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYD 2145
MLP+ALHGYRT+VR+STGATP+SLVYGMEAVLP+EVEIPSLRV+++ KL EAEW ++R++
Sbjct: 2103 MLPFALHGYRTSVRTSTGATPYSLVYGMEAVLPVEVEIPSLRVLLDVKLDEAEWIRTRFN 2162
Query: 2146 QLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWAPN 2205
+L+LIEE+R+ + G YQ RMK AFD+KV PR +++G+LVLKR + D RGKW PN
Sbjct: 2163 ELSLIEERRLAVVCHGQLYQRRMKRAFDQKVRPRSYQIGDLVLKRILPPGTDNRGKWTPN 2222
Query: 2206 YEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2245
YEGPYVVKK FSGGAL+LT MDG + P+PVN+D+VKKYFA
Sbjct: 2223 YEGPYVVKKVFSGGALMLTTMDGEDFPSPVNSDVVKKYFA 2262
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 1643 bits (4254), Expect = 0.0
Identities = 907/1864 (48%), Positives = 1191/1864 (63%), Gaps = 135/1864 (7%)
Query: 7 QLRTELASLKEELAKANDVMTALLAAQEQSATAIPTTTAA-PVTTSVLPTTSADNRFTMP 65
Q++ ELA +K +A+ ++M + QE+ + AA P P N +
Sbjct: 3 QVQAELAEMKANMAQFMNMMQGVAQGQEELRALVQRQEAAIPPVNHAPPEGGPVNGNNVA 62
Query: 66 VGFPY----------GLPPFFTPVATASTSGTANNVLIPATNAASIIATLPQTTAAVTEP 115
P G+ P+A + A V PA N A I+ E
Sbjct: 63 AAVPINNYAVGDELGGIRINGQPIAPDVANARA--VRAPARNPAPIVDR--------QED 112
Query: 116 LVHILPQGININTQHRSIPVTKTMEEMMEELAKELRH-EIQANRGSADSVKTQDLCLVSK 174
+ +L + ++ + + ++ LA+++R E Q + G ++ LV
Sbjct: 113 MFSLLSEDEDV------LGRVDERDRKVDALAEKIRAMECQNSLG----FDVTNMGLVEG 162
Query: 175 VDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTS 234
+ +P KFK P FD+YNG +CP+ H+ Y RK+ Y D++ + ++ FQDSL + +WY
Sbjct: 163 LRIPYKFKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYME 222
Query: 235 LSKNDIHTFDELATAFKSHYGFNTRLRPNREFLRSLSQKKEESFREYAQRWRGAAARITP 294
L ++ I + +L AF Y N + P+R L+SL QK ESF+EYAQRWR AAR+ P
Sbjct: 223 LKRDSIRCWKDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFKEYAQRWRELAARVQP 282
Query: 295 ALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESSVN 354
+ E E+T F+ TL+ +++RM +FS++V G R E ++ G I ++ +
Sbjct: 283 PMLERELTDMFIGTLQGVFMDRMGSCPFVSFSDVVICGERTESLIKTGKI----QDAGSS 338
Query: 355 ASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYMPYSQHPFFPPFYHQ 414
+SK+ G +++E E V Q+ + + A +P
Sbjct: 339 SSKKPFAGAPRRREGETNAVQYRRDQNRSQRCQVAAVTIPA------------------- 379
Query: 415 YPLPPGQPQVPVNAIAQQMKQQMPVQQQQQNQQARPTFPPIPMLYAELLPTLLQRGHCTT 474
P P Q Q V QQ +QQ P Q +Q+ R F +PM YAELLP LL+ G
Sbjct: 380 -PQPRQQQQQRVQQPQQQQQQQRPYQPRQRMPDRR--FDSLPMSYAELLPELLRLGMVEL 436
Query: 475 RQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVL 534
R PP LPP + ++++CDFH GA GH E C AL++ V+ LID + F VP+V+
Sbjct: 437 RT-MAPPTVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDAKAINFAP-VPNVV 494
Query: 535 DNPLPNHAV--VNMIEVCE-EAPRLDVRNVATPLVPLHIKLCKASLFNHDHAKCLGCLRD 591
+NP+P H VN IE E E ++V +V T L+ + +L +++ CLGC
Sbjct: 495 NNPMPQHGGHRVNNIEGKEAEDLVVNVDDVQTSLLVVKGRLLNGGVYSGCDEDCLGCAES 554
Query: 592 PLGCHAVQDDIQSLMNDNLL----------TVSDVCVI-------------VPVFHDPPV 628
GC ++ IQ +M++ L TVS + + P + PV
Sbjct: 555 ENGCDQLRTGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPSEGRGQRVVSAPATNGTPV 614
Query: 629 KSVTLKKNAEPLVIRLPGPIPYVSDKAVPYKY-----------------NATMIENGV-- 669
+ P I G + +AVP+KY N + G+
Sbjct: 615 TISVPVTISAPTTIAASGRRAVENSRAVPWKYDNAYRSNRRAESQTRPVNQAPVTIGLPN 674
Query: 670 EVPLASFATVSNIAEGTSAALRSGKVRPPLFQKKVATPTIPPVEEATPTVVSPIATDVNQ 729
VP V N+ G RSG++ P + + + V
Sbjct: 675 RVPATVGPAVDNVG-GPGGFTRSGRLFAPQPLRDNNAEALAKAKGKQAVVEEEPVQKEAP 733
Query: 730 SGKSIEDSNLDEILRIIKRSDYKIVDQLLQTPSKISVLSLLLSSEAHRNTLLKVLEQAYV 789
G +D ++E ++IIK+SDYKIVDQL QTPSKIS+LSLLL SEAHRN LLK+L AYV
Sbjct: 734 EGSFEKD--VEEFMKIIKKSDYKIVDQLNQTPSKISILSLLLCSEAHRNALLKMLNLAYV 791
Query: 790 DHEVTVDRFGGIVGNITACNNLWFSEEELPEVGKSHNLALHISVNCKSDMISNVLVDTGS 849
E++V++ G++ N++ + + F+ +L G++HN ALHI++ CK ++S+VLVDTGS
Sbjct: 792 PQEISVNQLEGVMANVSTRHGVGFTNLDLTPEGRNHNKALHITMECKGAVLSHVLVDTGS 851
Query: 850 SLNVMPKTTLDQLSYRGTPLRRSTFLVKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMD 909
SLNV+PK L ++ G L S +V+AFDGS+++V GE+ LP+ IGPE F + F VMD
Sbjct: 852 SLNVLPKQILKKIDVEGFVLTPSDLIVRAFDGSKRSVCGEVTLPVKIGPEVFDIIFYVMD 911
Query: 910 INASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGEEAYLVSQLSSFSCIEA-G 968
I +YSCLLGRPWIH AGAV+STLHQKLK+V NG++VT+ GEE LVS LSSF +E G
Sbjct: 912 IQPAYSCLLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDG 971
Query: 969 SAEGT---AFQGLTIEG---AEPKKAGAAMASLKDAQRAVQEGQAAGWGKVIQLCENKRK 1022
T AF+ + +E AE +K GA++ S K A+ V G+A GWGK++ L + K
Sbjct: 972 EIHETLCQAFETVALEKVAYAEQRKPGASITSYKQAKEVVDSGKAEGWGKMVYLPVKEDK 1031
Query: 1023 EGLGFSPSSRVSSG-----VFHSAGFVNAISEEATGSG-----------LRPVFVTPGGI 1066
G+G+ P +G F SAG +N ATGS +RP PGG
Sbjct: 1032 FGVGYEPLQAEQNGQAGPSTFTSAGLMNHGDVSATGSEDCDSDCDLDNWVRPC--APGGS 1089
Query: 1067 ATDWDAIDIPSIMHVSELNHNKPVEHSNPTVPPSFDFPGYEAEDEESND--IPYEITRLL 1124
+W A ++ + ++E + +++ F P Y+AE+E D +P E+ RLL
Sbjct: 1090 INNWTAEEVVQVTLLTESDLMAFTMNNSVMAQYDFGNPIYQAEEESEEDCELPAELVRLL 1149
Query: 1125 EQEKKAIQSHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDM 1184
QE++ IQ HQEE+E++N+GTE+ KREIKIGA LE+ VK+++I++LREY +IFAWSY+DM
Sbjct: 1150 RQEERVIQPHQEELEVVNLGTEDAKREIKIGAALEDSVKRRLIEMLREYVEIFAWSYQDM 1209
Query: 1185 PGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVAN 1244
PGLD IV HR+P + CP V+QKLRRT PDMA KIK EVQKQ DAGFL YP WVAN
Sbjct: 1210 PGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMATKIKEEVQKQWDAGFLAVTSYPPWVAN 1269
Query: 1245 IVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIK 1304
IVPVPKKDGKVRMCVD+RDLN+ASPKD+FPLPHIDVLVDNTAQS VFSFMDGFSGYNQIK
Sbjct: 1270 IVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPHIDVLVDNTAQSSVFSFMDGFSGYNQIK 1329
Query: 1305 MSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVK 1364
M+PED EKT+FITPWGTF YKVMPFGL NAGATYQR MTTLFHDM+HKE+EVYVDDMI K
Sbjct: 1330 MAPEDMEKTTFITPWGTFYYKVMPFGLKNAGATYQRAMTTLFHDMMHKEIEVYVDDMIAK 1389
Query: 1365 STDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIR 1424
S EE+H+ L K+F+RLRK+KLRLNPNKCTFGVRSGKLLGFIVS+KGIEVDP KV+AI+
Sbjct: 1390 SQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFGVRSGKLLGFIVSEKGIEVDPAKVKAIQ 1449
Query: 1425 EMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKN 1484
EMP P+TEKQVRGFLGRLNYI+RFISH+TATC PIFKLLRKNQ + WND+CQ+AFD IK
Sbjct: 1450 EMPEPKTEKQVRGFLGRLNYIARFISHLTATCEPIFKLLRKNQAIKWNDDCQKAFDKIKE 1509
Query: 1485 YLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYT 1544
YL +PPIL PPV GRPLIMYL+V + SMGCVLGQ DE+G+KEHAIYYLSKKFTDCETRY+
Sbjct: 1510 YLQKPPILTPPVPGRPLIMYLSVTENSMGCVLGQHDESGRKEHAIYYLSKKFTDCETRYS 1569
Query: 1545 MLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIV 1604
+LEKTCCALAWAA+RLR Y++NHTT LIS+MDP+KYIFEK A+TG++ARWQM+L+EYDI
Sbjct: 1570 LLEKTCCALAWAARRLRQYMLNHTTLLISKMDPVKYIFEKPALTGRVARWQMILTEYDIQ 1629
Query: 1605 FKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWG 1664
+ +QKAIKGSIL+D+LA QP++DYQP+ F+FPDE+IMYLK KDCEEPL+ EGPDP+ KW
Sbjct: 1630 YTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPDEDIMYLKVKDCEEPLVEEGPDPDDKWT 1689
Query: 1665 LVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKH 1724
L+FDGAVN G G+GAV+++P+G HIPF+AR+ F+ TNN AEYEACI GIEEAID+RIK
Sbjct: 1690 LMFDGAVNMNGNGVGAVLINPKGAHIPFSARLTFDVTNNEAEYEACIMGIEEAIDLRIKT 1749
Query: 1725 LDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALAT 1784
LDIYGDSALV+NQ+ G+W T+ LIPYRDY RR+LT+F KV L+H+PRDENQMADALAT
Sbjct: 1750 LDIYGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVRLYHVPRDENQMADALAT 1809
Query: 1785 LSSM 1788
LSSM
Sbjct: 1810 LSSM 1813
>ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 903 bits (2334), Expect = 0.0
Identities = 480/1140 (42%), Positives = 686/1140 (60%), Gaps = 37/1140 (3%)
Query: 1119 EITRLLEQEKKAIQSHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFA 1178
++ L+Q Q +E+ +N+GTE++ R I + L E ++ L E+ D FA
Sbjct: 1759 DVAGALKQLDDGGQPTIDELVEMNLGTEDDPRPIFVSGMLTEEEREDYRSFLMEFRDCFA 1818
Query: 1179 WSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEY 1238
W+Y++MPGLD + H++ P+ PV+Q RR P+ ++ +EV + I+ GF+ ++Y
Sbjct: 1819 WTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAEVDRLINVGFIKEIQY 1878
Query: 1239 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 1298
P W+ANIVPV KK+G+VR+CVDFRDLN+A PKD+FPLP +++VD+T S
Sbjct: 1879 PRWLANIVPVEKKNGQVRVCVDFRDLNRACPKDDFPLPITEMVVDSTTG------YGALS 1932
Query: 1299 GYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYV 1358
GYNQIKM D T+F TP G F Y VMPFGL NAGATYQR M + D+IH VE YV
Sbjct: 1933 GYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQRAMQFVLDDLIHHSVECYV 1992
Query: 1359 DDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1418
DDM+VK+ D E H E L +FERLR+++L++NP KC F V+SG LGF++ +GIE++P
Sbjct: 1993 DDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVFLGFVIRHRGIEIEPK 2052
Query: 1419 KVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEA 1478
K++AI MP PQ K +R G+L YI RFIS+++ P KL++K P VW++ECQ
Sbjct: 2053 KIKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLMKKGTPFVWDEECQNG 2112
Query: 1479 FDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTD 1538
FDSIK YLL PP+L PV+GRPLI+Y+A S+G +L Q ++ G KE A YYLS+
Sbjct: 2113 FDSIKRYLLNPPVLAAPVKGRPLILYIATQPASIGALLAQHNDEG-KEVACYYLSRTMVG 2171
Query: 1539 CETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLL 1598
E Y+ +EK C AL +A K+LRHY++ H LI+R DPI+Y+ + +TG++ +W +L+
Sbjct: 2172 AEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRYVLSQPVLTGRLGKWALLM 2231
Query: 1599 SEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPD 1658
EYDI F QKAIKG LA+ LA P+ D P+ + PDEEI + ++
Sbjct: 2232 MEYDITFVPQKAIKGQALAEFLATHPMPDDSPLIANLPDEEIFTAELQE----------- 2280
Query: 1659 PNSKWGLVFDGA----VNAYG-----KGIGAVIVSPQGHHIPFTARIL-FECTNNMAEYE 1708
+W L FDGA +N G G G V +PQG I + +L EC+NN AEYE
Sbjct: 2281 ---QWELYFDGASRKDINPDGTPRRRAGAGLVFKTPQGGVIYHSFSLLKEECSNNEAEYE 2337
Query: 1709 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1768
A IFG+ A+ M ++ L +GDS L+I QI +E +L+PY ARRL+ F +E+
Sbjct: 2338 ALIFGLLLALSMEVRSLRAHGDSRLIIRQINNIYEVRKPELVPYYTVARRLMDKFEHIEV 2397
Query: 1769 HHIPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDC 1828
H+PR +N ADALA L++ N ++ +R P+ + I + ++ N +
Sbjct: 2398 IHVPRSKNAPADALAKLAAALVFQGDNPAQIVVEERWLLPAVLELIPEEVNIIITNSAEE 2457
Query: 1829 KPWYYDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDM-VLLRCVDEHE 1887
+ W + P +++ L+R ++ VLYKR+Y VLLRCVD E
Sbjct: 2458 EDWRQPFLDYFKHGSLP--EDPVERRQLQRRLPSYIYKAGVLYKRSYGQEVLLRCVDRSE 2515
Query: 1888 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1947
A +++ +VH G G H +G M + GYYW + DC + A+ CH CQI+ + H P
Sbjct: 2516 ANRVLQEVHHGVCGGHQSGPKMYHSIRLVGYYWPGIMADCLKTAKTCHGCQIHDNFKHQP 2575
Query: 1948 PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 2007
P L+ WPF WGID+IG I P +S GHRFIL A DYF+KW EA V V
Sbjct: 2576 PAPLHPTVPSWPFDAWGIDVIGLINPPSSRGHRFILTATDYFSKWAEAVPLREVKSSDVI 2635
Query: 2008 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 2067
F++ +II R+GVP +I +DN + + E++KI+ + S+ Y PQ NG EA NK
Sbjct: 2636 NFLERHIIYRFGVPHRITSDNAKAFKSQKIYRFMEKYKIKWNYSTGYYPQANGMAEAFNK 2695
Query: 2068 NIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2126
+ +I++K V + +DWH+ L AL YR TVR+ T ATP+SLVYG EAVLPLE+++PSL
Sbjct: 2696 TLGKILKKTVDKHRRDWHDRLYEALWAYRVTVRTPTQATPYSLVYGNEAVLPLEIQLPSL 2755
Query: 2127 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGE- 2185
RV + +L++ E + R+ +L+ +EE+R+ A+ Y+ M A+DK V R F+ GE
Sbjct: 2756 RVAIHDELTKDEQIRLRFQELDAVEEERLGALQNLELYRQNMVRAYDKLVKQRVFRKGEL 2815
Query: 2186 -LVLKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2244
LVL+R I +GK+ P +EGPYV+++A+ GGA L G + P+N +KKYF
Sbjct: 2816 VLVLRRPIVVTHKMKGKFEPKWEGPYVIEQAYDGGAYQLIDHQGSQPMPPINGRFLKKYF 2875
Score = 115 bits (288), Expect = 2e-23
Identities = 86/289 (29%), Positives = 137/289 (46%), Gaps = 23/289 (7%)
Query: 684 EGTSAALRSGKVRPPLFQKKVATPTIP-PVEEATPTVVSPIATDVNQSGKSIEDSNLDEI 742
E + +LR GK P + KV P + P ++A+P +P A + K
Sbjct: 1252 EEVNISLRGGKTLPDPHKSKV--PNVDKPAKKASPPGEAPEAPETKTGSKEKP------- 1302
Query: 743 LRIIKRSDYKIVDQLLQTPSKISVLSLLLSSEAHRNTLLKVLEQAYVDHEVTVDRFGGIV 802
DYK++ L + P+ +SV L+ R L+K L+ V +EV + + +
Sbjct: 1303 -----AVDYKVLAHLKRIPALLSVYDALMMVPDLREALIKALQAPEV-YEVDMAKHR-LY 1355
Query: 803 GNITACNNLWFSEEELPEVGKSHNLALHISVNCKSDMISNVLVDTGSSLNVMPKTTLDQL 862
N N + F++E+ G HN L+I N S + +L+D GS++N++P +L +
Sbjct: 1356 DNPLFVNEITFADEDNIIKGGDHNRPLYIEGNIGSAHLRRILIDLGSAVNILPVRSLTRA 1415
Query: 863 SYRGTPLRRSTFLVKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPW 922
+ L ++ FD K LG I + I + +F V F V++ N SYS LLGRPW
Sbjct: 1416 GFTTKDLEPIDVVICGFDNQGKPTLGAITIKIQMSTFSFKVRFFVIEANTSYSALLGRPW 1475
Query: 923 IHDAGAVTSTLHQKLKFVKNGKLVTIHGEEAYLVSQLSSFSCIEAGSAE 971
IH V STLHQ LKF+ +G + + S S ++ E+ A+
Sbjct: 1476 IHKYRVVPSTLHQCLKFLDG------NGVQQRITSNFSPYTIQESYHAD 1518
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 768 bits (1983), Expect = 0.0
Identities = 420/1063 (39%), Positives = 618/1063 (57%), Gaps = 39/1063 (3%)
Query: 1184 MPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVA 1243
M G+ P I HR+ PVRQ++RR HPD I++E+ K ++AGF+ V YP+W+A
Sbjct: 1 MKGIHPSITSHRLNVVSTARPVRQRIRRFHPDRQRVIRNEIDKLLEAGFIREVSYPDWLA 60
Query: 1244 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 1303
N+V VPKK+GK R+CVD+ +LN A PKD+FPLP ID +VD+T+ + SF+D FSGY+QI
Sbjct: 61 NVVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFLDAFSGYHQI 120
Query: 1304 KMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIV 1363
MSP+D EK +FITP +CYKVMPFGL NAGATYQR MT +F +I VEVY+DD++V
Sbjct: 121 PMSPDDEEKIAFITPHDLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHSVEVYIDDIVV 180
Query: 1364 KSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 1423
KS EQH+ +L ++F LR+Y ++LNP+KC FGV + K LGF+VSQ+GIEV PD+V+A+
Sbjct: 181 KSKTREQHILHLQEVFYLLRRYGMKLNPSKCAFGVSARKFLGFMVSQRGIEVSPDQVKAV 240
Query: 1424 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIK 1483
E P P+ +K+++ G+L + RFI+ P F +RK W D CQ A + IK
Sbjct: 241 METPPPRNKKELQRLTGKLVALGRFIARFIDELRPFFLAIRKAGTHGWTDNCQNALERIK 300
Query: 1484 NYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 1543
+YL++PPIL P+ L MYLAV + ++ VL + + K++ IYY+S+ D ETRY
Sbjct: 301 HYLMQPPILSSPIPKEKLYMYLAVSEWAISAVL-FRCPSPKEQKPIYYVSRALADVETRY 359
Query: 1544 TMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDI 1603
+ +E AL AA++LR Y H ++ P++ I K +TG++ +W + LSE+ I
Sbjct: 360 SKMELISLALRSAAQKLRPYFQAHPV-IVLTDQPLRNILHKPDLTGRMLQWAIELSEFGI 418
Query: 1604 VFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKW 1663
F+ + ++KG ++AD + +E+ +P +EG W
Sbjct: 419 EFQPRLSMKGQVMADFV----------LEYS--------------RKPGQHEGSRKKEWW 454
Query: 1664 GLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 1723
L DGA + G G+G ++ SP G H+ R+ F +NN AEYEA + G++ A+ + +
Sbjct: 455 TLRVDGASRSSGSGVGLLLQSPTGEHLEQAIRLGFSASNNEAEYEAILSGLDLALALSVS 514
Query: 1724 HLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALA 1783
L I+ DS LV+ ++ E+E A++ Y R L FT+ + I R +N+ ADALA
Sbjct: 515 KLRIFSDSQLVVKHVQEEYEAKDARMARYLAKVRNTLQQFTEWTIEKIKRADNRRADALA 574
Query: 1784 TLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDCKPWYYDIKQFLLSRE 1843
+++ + +P I VQ S + + D + W DI +++ +
Sbjct: 575 GIAASLSIKEAILLP-IHVQTNPSVSEI----SICSTTEAPQADDQEWMNDITEYIRTGT 629
Query: 1844 YPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTH 1903
PG KQ K +R A+RF L G LYKR++ LRC+ EA+ ++ ++H+G +G H
Sbjct: 630 L-PGDPKQAHK-VRVQAARFTLIGGHLYKRSFTGPYLRCLGHSEAQYVLAELHEGIYGNH 687
Query: 1904 ATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVISSPWPFSMW 1963
+ G +++ + GYYW M+ + Y ++C KCQ YA H+P L IS PWPF+ W
Sbjct: 688 SGGRSLAHRAHSQGYYWPTMKKEAAAYVKRCDKCQRYAPIPHMPSTTLKSISGPWPFAQW 747
Query: 1964 GIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSK 2023
G+D++ R P A +F+LVA DYF+KWVEA +Y + + V KF+ NIICR+G+P
Sbjct: 748 GMDIV-RPLPTAPAQKKFLLVATDYFSKWVEAEAYASTKDKDVTKFVWKNIICRFGIPQT 806
Query: 2024 IITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYK-D 2082
II DNG ++ + C E I + S+P PQ NG EA NK + ++K + K
Sbjct: 807 IIADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQSNGQAEATNKTLITALKKRLEQAKGK 866
Query: 2083 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQS 2142
W E LP L YRTT TG TPF+L YGM+AV+P+E+ +P++ AK S+A
Sbjct: 867 WVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPIEIGLPTIWT-NAAKQSDANMQLG 925
Query: 2143 RYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPD-PRGK 2201
R L+ +E R A R YQ R +++KV PR K G LVL++ + GK
Sbjct: 926 R--NLDWTDEVRESASIRMADYQQRASAHYNRKVRPRSLKNGTLVLRKFFENTTEVGAGK 983
Query: 2202 WAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2244
+ N+EGPY+V KA GA L +DG L P N +K+Y+
Sbjct: 984 FQANWEGPYIVSKASDNGAYHLQKLDGTPLLRPWNVSNLKQYY 1026
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 765 bits (1975), Expect = 0.0
Identities = 435/1138 (38%), Positives = 643/1138 (56%), Gaps = 53/1138 (4%)
Query: 1122 RLLEQEKKAIQSHQEE----IELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIF 1177
R ++ K +S++E E++NI + R + +GA + ++ ++I LL+ F
Sbjct: 738 RAPKEAKTPSRSYEESELCRTEMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTF 797
Query: 1178 AWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVE 1237
AWS EDM G+DP I H + P PV+QK R+ P+ A + EV+K + AG ++ V+
Sbjct: 798 AWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVK 857
Query: 1238 YPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGF 1297
YPEW+AN V V KK+GK R+CVD+ DLNKA PKD++PLPHID LV+ T+ + + SFMD F
Sbjct: 858 YPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAF 917
Query: 1298 SGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVY 1357
SGYNQI M +D+EKTSF+T GT+CYKVM FGL NAGATYQR + + D I + VEVY
Sbjct: 918 SGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVY 977
Query: 1358 VDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDP 1417
+DDM+VKS E HVE+L+K F+ L Y ++LNP KCTFGV SG+ LG++V+++GIE +P
Sbjct: 978 IDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANP 1037
Query: 1418 DKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQE 1477
++RAI E+P+P+ ++V+ GR+ ++RFIS T C P + LL++ W+ + +E
Sbjct: 1038 KQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEE 1097
Query: 1478 AFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFT 1537
AF+ +K+YL PPILV P G L +Y+AV D ++ VL ++D ++ I+Y SK
Sbjct: 1098 AFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLV 1155
Query: 1538 DCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQML 1597
+ ETRY ++EK A+ +A++LR Y +HT +++ P++ + +G++ +W +
Sbjct: 1156 EAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVE 1214
Query: 1598 LSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGP 1657
LSEYDI F+ + A+K +LAD L PL + EE
Sbjct: 1215 LSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEE------------------ 1256
Query: 1658 DPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEA 1717
W L DG+ +A G GIG +VSP + + R+ F TNN+AEYE I G+ A
Sbjct: 1257 -----WSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLA 1311
Query: 1718 IDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQ 1777
M+I + + DS L+ Q+ GE+E + K+ Y + + F +L IPR +N
Sbjct: 1312 AGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNA 1371
Query: 1778 MADALATLSSMFRVNHWNDV-PLIKVQRLERPS-----HVFAIGDVIDQAGENVVDCKPW 1831
ADALA L+ + +D+ +I V+ +++PS V + + + D W
Sbjct: 1372 PADALAALA----LTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDW 1427
Query: 1832 YYDIKQFLLSREYPPGASKQDKKTLRRL---ASRFLLDGDVLYKRNYDMVLLRCVDEHEA 1888
+I+ +L G DK T RRL A+++ L + L K + +L C+ E
Sbjct: 1428 RVEIRDYL-----SDGTLPSDKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEI 1482
Query: 1889 EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPP 1948
++M + H+G G H+ G ++ KL + G+YW M DC + KC +CQ +A IH P
Sbjct: 1483 NEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPT 1542
Query: 1949 HALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 2008
L +P+PF W +D++G + AS RFILV DYFTKWVEA SY + V
Sbjct: 1543 ELLRAGVAPYPFMRWAMDIVGPM--PASRQKRFILVMTDYFTKWVEAESYATIRANDVQN 1600
Query: 2009 FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKN 2068
F+ IICR+G+P +IITDNG+ + + C +KI + S+P PQ NG EA NK
Sbjct: 1601 FVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKT 1660
Query: 2069 IKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLR 2127
I ++K + K W + L L YRTT RS+T TPF+ YGMEA+ P EV SLR
Sbjct: 1661 ILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLR 1720
Query: 2128 VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGELV 2187
M K E + D+L+ +EE R A+ R +YQ +++KVH R F VG+LV
Sbjct: 1721 RSMMVKNPELN-DRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLV 1779
Query: 2188 LKRRISQQPD-PRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2244
L++ + GK N+EG Y V K G L M G +P N+ +K+Y+
Sbjct: 1780 LRKVFENTAEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1837
Score = 74.3 bits (181), Expect = 4e-11
Identities = 48/176 (27%), Positives = 83/176 (46%), Gaps = 7/176 (3%)
Query: 813 FSEEELPEVGKSHNLALHISVNCKSDMISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRS 872
F++ +L + HN L + + ++ VL+DTGSS++++ K L ++ ++
Sbjct: 602 FTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPV 661
Query: 873 TFLVKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTST 932
+ + FDG +G I LPI +G V F V+ A Y+ +LG PWIH A+ ST
Sbjct: 662 SKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPST 721
Query: 933 LHQKLKFVKNGKLVTIHG-------EEAYLVSQLSSFSCIEAGSAEGTAFQGLTIE 981
HQ +KF + + T+ +Y S+L + ++ T G+ E
Sbjct: 722 YHQCVKFPTHNGIFTLRAPKEAKTPSRSYEESELCRTEMVNIDESDPTRCVGVGAE 777
Score = 48.5 bits (114), Expect = 0.003
Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%)
Query: 137 KTMEEMMEELAKELRHEIQANRGSADSVKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQ 196
+T+ EM ++ + + +R ++ +T ++ V + KI + YNG P+
Sbjct: 173 RTISEMSSKIHRATSTAPELDRVLEETQQTPFTRRITNVSIRGAQKIK-LESYNGRNDPK 231
Query: 197 NHIIKY---VRKMGNYKDN-DSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELATAFKS 252
+ + + + DN D+ F + L A W++ L N I +F +L ++F
Sbjct: 232 EFLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAHNWFSRLKPNSIDSFHQLTSSFLK 291
Query: 253 HYGFNTRLRPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKD 312
HY + + L S+SQ +ES R + R++ IT + +
Sbjct: 292 HYAPLIENQTSNADLWSISQGAKESLRSFVDRFKLVVTNITVPDEAAIVALRNAVWYDSR 351
Query: 313 YVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 352
+ + + + AP+ + + +R E + +I+ K S+
Sbjct: 352 FRDDITLHAPSTLEDALHRASRFIELEEEKLILARKHNST 391
>gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530550|ref|NP_919577.1| putative
retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18581535|gb|AAK52540.2| Putative
retroelement pol polyprotein [Oryza sativa]
Length = 1580
Score = 756 bits (1953), Expect = 0.0
Identities = 421/1105 (38%), Positives = 633/1105 (57%), Gaps = 66/1105 (5%)
Query: 1147 ENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVR 1206
++ EI I + +G + +I+LL+E+ D F W Y +MPG IVEHR+P KP P +
Sbjct: 528 DDLEEIDISPAIGQG-RHLLIELLKEFRDCFTWEYYEMPGHSRSIVEHRLPLKPGVRPHQ 586
Query: 1207 QKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1266
Q RR DM +K+E+++ DAGF+ Y EWV++IVPV KK+GKVR+C+DFR LNK
Sbjct: 587 QLPRRCKADMLEPVKAEIKRLYDAGFIRPCRYAEWVSSIVPVIKKNGKVRVCIDFRYLNK 646
Query: 1267 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPW--GTFCY 1324
A+PKD +P+ D LVD + K+ SFMDG +GYNQI M+ ED KT+F P G F +
Sbjct: 647 ATPKDEYPMLVADQLVDAASGHKILSFMDGNAGYNQIFMAEEDIHKTTFRCPGAIGLFEW 706
Query: 1325 KVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRK 1384
V+ F L +AGATYQR M ++HD+I VEVY+DD++VKS + E H+ L K+FER RK
Sbjct: 707 VVITFVLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRK 766
Query: 1385 YKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNY 1444
Y L++NP KC FGV +G+ LGF+V ++GIEV + AI+++ P+ + +++ +G++N+
Sbjct: 767 YGLKMNPTKCAFGVSAGQFLGFLVHERGIEVTQRSINAIKKIKPPEDKTELQEMIGKINF 826
Query: 1445 ISRFISHMTATCGPIFKLLR--KNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLI 1502
+ RFIS ++ P LLR +Q W E Q+A D+IK YL PP+L+PP +G P
Sbjct: 827 VRRFISILSGKLEPFTPLLRLKADQQFAWGAEQQKALDNIKEYLSSPPVLIPPQKGIPFR 886
Query: 1503 MYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRH 1562
+YL+ D+S+ VL Q+ E +KE ++YLS++ + ETRY+ +EK C L ++ RLRH
Sbjct: 887 LYLSAGDKSISSVLIQELE--RKERVVFYLSRRLLNAETRYSPVEKLCLCLYFSCTRLRH 944
Query: 1563 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1622
YL+++ +I + D +KY+ + G+I +W L+E+D+ +++ KAIKG +A+ +
Sbjct: 945 YLLSNECTVICKADVVKYMLSAPILKGRIGKWIFSLTEFDLRYESPKAIKGQAIANFIV- 1003
Query: 1623 QPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVI 1682
D+ D+ I G W L FDG+V +G GIG VI
Sbjct: 1004 -----------DYRDDSI---------------GSVEVVPWTLFFDGSVCTHGCGIGLVI 1037
Query: 1683 VSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEW 1742
+SP+G F I TNN AEYEA + G++ ++ ++I GDS LVI+Q+ GE+
Sbjct: 1038 ISPRGACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADTIEIMGDSLLVISQLAGEY 1097
Query: 1743 ETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKV 1802
E + LI Y + + L+ F V L H+ R++N A+ LA +S +++ +IK
Sbjct: 1098 ECKNDTLIVYNEKCQELMREFRLVTLKHVSREQNIEANDLAQGASGYKL-------MIKH 1150
Query: 1803 QRLERPSHVFAIGDVIDQAGENVVDCKPWYYDIKQFLLSREYPPGASKQDKKTLRRLASR 1862
++E V+ W Y + Q+L S+ + LR A +
Sbjct: 1151 VQIEVA----------------VITADDWRYYVYQYLQD------PSQSASRKLRYKALK 1188
Query: 1863 FLLDGDVLYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMA 1922
++L D LY R D VLL+C+ +A+ + +VH+G GTH + H M L AGY+W
Sbjct: 1189 YILLDDELYYRTIDGVLLKCLSTDQAKVAIGEVHEGICGTHQSAHKMKWLLRCAGYFWPT 1248
Query: 1923 MEHDCYQYARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFI 1982
M DC++Y + C CQ + P A+N I PWPF WGIDMIG I P +S GH+FI
Sbjct: 1249 MLEDCFRYYKGCQDCQKFGAIQRAPASAMNPIIKPWPFRGWGIDMIGMINPPSSKGHKFI 1308
Query: 1983 LVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCE 2042
LVA DYFTKWVEA V +F++ +II R G+P I TD G+ ++ +
Sbjct: 1309 LVATDYFTKWVEAIPLKKVDSGDAIQFVQEHIIYRVGIPQTITTDQGSIFVSDEFIQFAD 1368
Query: 2043 EFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSS 2101
I+ NSSPY Q NG EA+NK++ +++++ ++ Y + WH L AL YR S
Sbjct: 1369 SMGIKLLNSSPYYAQANGQAEASNKSLIKLIKRKISDYPRQWHTRLAEALWSYRMACHGS 1428
Query: 2102 TGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARG 2161
P+ LVY +A+LP EV I S R ++ L+ E+ D+ + + R+ A+A+
Sbjct: 1429 IQVPPYKLVYRHKAILPWEVRIGSRRTELQNDLTADEYSNLMADEREDLVQSRLRALAKV 1488
Query: 2162 HSYQARMKTAFDKKVHPREFKVGELVLK--RRISQQPDPRGKWAPNYEGPYVVKKAFSGG 2219
+ R+ ++KKV P++F GEL+ K I + GKW+PN+EGP+ + K S G
Sbjct: 1489 IKDKERVTRHYNKKVVPKDFSEGELIWKLILPIGTRDSKFGKWSPNWEGPFQIHKVVSKG 1548
Query: 2220 ALILTHMDGVELPNPVNADIVKKYF 2244
A +L +DG +N +KKY+
Sbjct: 1549 AYMLQGLDGEVYDRALNGKYLKKYY 1573
Score = 77.4 bits (189), Expect = 5e-12
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 5/197 (2%)
Query: 817 ELPEVGKSHNLA-LHISVNCKSDMISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFL 875
E PE ++ +L L+I+ +S ++VD G+++N+MP T +L L ++ +
Sbjct: 351 EKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMV 410
Query: 876 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 935
+K F G+ +G +++ +T+G + TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 411 LKDFGGNPSETMGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTIHQ 470
Query: 936 KLKFVKNGKLVTIHGEEAYLVSQLSSFSCIEAGSAEGTAFQGLTIEGAEPKKAGAAMASL 995
L G + I ++ L + S+ C E + T++ + K+ M++
Sbjct: 471 CL-IQWQGDKIEIVPADSQLKMENPSY-CFEGVMEGSNVYTKDTVDDLDDKQGQGLMSA- 527
Query: 996 KDAQRAVQEGQAAGWGK 1012
D + A G G+
Sbjct: 528 -DDLEEIDISPAIGQGR 543
>ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultivar-group)]
gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1986
Score = 700 bits (1807), Expect = 0.0
Identities = 408/1139 (35%), Positives = 612/1139 (52%), Gaps = 53/1139 (4%)
Query: 1117 PYEITRLLEQEKKAIQSHQEEIELINIGTEENKRE-IKIGATLEEGVKQKIIQLLREYPD 1175
P + L K+A+ +E ++ + RE I++ AT E +I L+ D
Sbjct: 891 PRGVLSLRSDIKQAVTCDKESCDMAQTREMASAREEIRLAATTESA----LITFLQNNKD 946
Query: 1176 IFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMT 1235
IFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 947 IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKE 1006
Query: 1236 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1295
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D
Sbjct: 1007 VLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLD 1066
Query: 1296 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1355
+SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE
Sbjct: 1067 CYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVE 1126
Query: 1356 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1415
YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1127 AYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQA 1186
Query: 1416 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDEC 1475
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1187 NPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEA 1246
Query: 1476 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYY 1531
Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K + IY+
Sbjct: 1247 QKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYF 1306
Query: 1532 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1591
+S+ D +TRY ++K + ++L HY H+ +++ P+ + G+I
Sbjct: 1307 VSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRI 1365
Query: 1592 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEP 1651
A+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1366 AKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--------- 1411
Query: 1652 LINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1711
W + FDG+ G G G V++SP G + + I F ++N+AEYEA +
Sbjct: 1412 -----------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1460
Query: 1712 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHI 1771
G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H+
Sbjct: 1461 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1520
Query: 1772 PRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDCKPW 1831
R N+ AD LA S R +DV V+ L P+ + V+ W
Sbjct: 1521 LRHNNEAADRLANFGSK-REAAPSDV---FVEHLYTPTVPHKDTTQDADTHDVVMVEADW 1576
Query: 1832 YYDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEAEQL 1891
+FL S+E P K + + + R + +++ LYK++ +L RCV E QL
Sbjct: 1577 REPFIRFLSSQELP--QDKDEAERISRRSKLYVMHESELYKKSPSGILQRCVSLEEGRQL 1634
Query: 1892 MHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHAL 1951
+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P L
Sbjct: 1635 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1694
Query: 1952 NVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIK 2011
I WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1695 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF- 1752
Query: 2012 NNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-- 2069
NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I
Sbjct: 1753 INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1812
Query: 2070 ---KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2126
R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE SL
Sbjct: 1813 GIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1872
Query: 2127 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGEL 2186
R E + + R D L+ +EE R A+ + Y ++ ++ V R F VG+L
Sbjct: 1873 RF---RNFREERYEEDRVDDLHRLEEAREAALIQSARYLQGLRRYHNRNVRSRAFLVGDL 1929
Query: 2187 VLKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2245
VL++ Q R K +P +EGP+++ + G+ L DG + N N + +++++A
Sbjct: 1930 VLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFYA 1986
Score = 52.0 bits (123), Expect = 2e-04
Identities = 64/279 (22%), Positives = 115/279 (40%), Gaps = 35/279 (12%)
Query: 147 AKELRHEIQANRGSADSVK--TQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVR 204
A+ H + D V T DL +VD P FK ++Y+G T P++ + Y
Sbjct: 401 ARGYHHSPDCHDDDLDGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGL 457
Query: 205 KMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELATAFKSHYGFNTRLRPNR 264
+ ++ M + +L + A W L + I ++ EL F +++ T RP
Sbjct: 458 AIRAAGGDNKAMANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGT 516
Query: 265 EF-LRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPN 323
++ L ++ QK ES REY +R+ +I+ + ++ + F K ++ + + P
Sbjct: 517 QYDLYNVIQKSGESLREYIRRFSEQRNKISD-ISDDVIIAAFTKGIRHEELVGKFGRKPP 575
Query: 324 NFSEMVTMGTRLEEAVRDGIIVFEKAESSVNASKRY---------------GNGHHKKKE 368
T+ E+A + KAE +V ASK+ G+ +HK ++
Sbjct: 576 R-----TVKLMFEKANE-----YAKAEDAVTASKQSGPSWKPKNTPATGGGGSNNHKDRK 625
Query: 369 TEVGMVSAGAGQSMATVAPINAAQ--MPPSYPYMPYSQH 405
+ + A A S + +N M P+ P S H
Sbjct: 626 RKPEELVATAAHSSRQRSRVNTFDKIMNSQCPHHPNSNH 664
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 840 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 898
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 784 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 843
Query: 899 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 938
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 844 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 887
>gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531824|ref|NP_920214.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128685|gb|AAM92798.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1986
Score = 700 bits (1806), Expect = 0.0
Identities = 411/1141 (36%), Positives = 614/1141 (53%), Gaps = 57/1141 (4%)
Query: 1117 PYEITRLLEQEKKAIQSHQEEIELINIGTEENKRE-IKIGATLEEGVKQKIIQLLREYPD 1175
P + L K+A+ +E ++ + RE I++ AT E +I L+ D
Sbjct: 891 PRGVLTLRSDIKQAVTCDKESCDMAQTREIASAREEIRLAATTESA----LITFLQNNKD 946
Query: 1176 IFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMT 1235
IFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 947 IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKE 1006
Query: 1236 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1295
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D
Sbjct: 1007 VLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLD 1066
Query: 1296 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1355
+SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE
Sbjct: 1067 CYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVE 1126
Query: 1356 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1415
YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1127 AYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQA 1186
Query: 1416 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDEC 1475
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1187 NPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEA 1246
Query: 1476 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYY 1531
Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K + IY+
Sbjct: 1247 QKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYF 1306
Query: 1532 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1591
+S+ D + RY ++K + ++L HY H+ +++ P+ + G+I
Sbjct: 1307 VSEVLADSKARYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRI 1365
Query: 1592 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEP 1651
A+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1366 AKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--------- 1411
Query: 1652 LINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1711
W + FDG+ G G G V++SP G + + I F ++N+AEYEA +
Sbjct: 1412 -----------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1460
Query: 1712 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHI 1771
G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H+
Sbjct: 1461 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1520
Query: 1772 PRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPS--HVFAIGDVIDQAGENVVDCK 1829
R N+ AD LA S R +DV V+ L P+ H D D +V+
Sbjct: 1521 LRHNNEAADRLANFGSK-RETAPSDV---FVEHLYTPTVPHKDTTQDA-DTRNIAMVEA- 1574
Query: 1830 PWYYDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEAE 1889
W +FL S+E P K + + + R + ++L LYK++ +L RCV E
Sbjct: 1575 DWREPFIRFLTSQELP--QDKDEAERISRRSKLYVLHESELYKKSPSGILQRCVSLEEGR 1632
Query: 1890 QLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPH 1949
QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P
Sbjct: 1633 QLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQ 1692
Query: 1950 ALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKF 2009
L I WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1693 ELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDF 1751
Query: 2010 IKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI 2069
NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I
Sbjct: 1752 F-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMI 1810
Query: 2070 -----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIP 2124
R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1811 LQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFE 1870
Query: 2125 SLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVG 2184
SLR E + + R D L+ +EE R A+ + Y ++ ++ V R F VG
Sbjct: 1871 SLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVG 1927
Query: 2185 ELVLKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2244
+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +++++
Sbjct: 1928 DLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1985
Query: 2245 A 2245
A
Sbjct: 1986 A 1986
Score = 50.4 bits (119), Expect = 7e-04
Identities = 57/250 (22%), Positives = 105/250 (41%), Gaps = 30/250 (12%)
Query: 174 KVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYT 233
+VD P FK ++Y+G T P++ + Y + ++ M + +L + A W
Sbjct: 427 RVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLH 486
Query: 234 SLSKNDIHTFDELATAFKSHYGFNTRLRPNREF-LRSLSQKKEESFREYAQRWRGAAARI 292
L + I ++ EL F +++ T RP ++ L ++ QK ES R+Y +R+ +I
Sbjct: 487 GLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKI 545
Query: 293 TPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 352
+ D + + F K ++ + + P T+ E+A + KAE +
Sbjct: 546 SDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKANE-----YAKAEDA 594
Query: 353 VNASKRY---------------GNGHHKKKETEVGMVSAGAGQSMATVAPINAAQ--MPP 395
V ASK+ G+ +HK ++ + + A A S + +N M
Sbjct: 595 VTASKQSGPSWKPKNTPATGGGGSNNHKDRKRKPEELVATAAHSSRQRSRVNTFDKIMNS 654
Query: 396 SYPYMPYSQH 405
P+ P S H
Sbjct: 655 QCPHHPNSNH 664
Score = 47.4 bits (111), Expect = 0.006
Identities = 33/117 (28%), Positives = 55/117 (46%), Gaps = 5/117 (4%)
Query: 840 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTF-LVKAFDGSRKNVLGEIDLPITIGP 898
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 784 LRRTLIDGGSALNILFAKTLDDMQIPRSELKSSNAPFHGVIPGLSATPLGQITLPVTFGT 843
Query: 899 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGE 951
ENF ++F+V D +Y +LG P + AV + +K ++T+ +
Sbjct: 844 RENFRTENISFEVADFETAYHAILGHPALAKFMAVPHYTYMMMKMPGPRGVLTLRSD 900
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 699 bits (1804), Expect = 0.0
Identities = 395/1098 (35%), Positives = 621/1098 (55%), Gaps = 56/1098 (5%)
Query: 1152 IKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRR 1211
I IG LE+ ++++I+++++E +FAWS +++ G+D ++EH + K P +QKLRR
Sbjct: 956 ILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRR 1015
Query: 1212 THPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKD 1271
D K E++K + A + V +PEW+AN V V K +GK RMC+DF DLNKA PKD
Sbjct: 1016 MSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKD 1075
Query: 1272 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 1331
+FPLP ID LVD TA ++ SF+D +SGY+Q+ M ED EKTSFITP+GT+C+ MPFGL
Sbjct: 1076 DFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFGTYCFIRMPFGL 1135
Query: 1332 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 1391
NAGAT+ R + + + + VE Y+DD++VKS H + L + FE LRK ++LNP
Sbjct: 1136 KNAGATFARLIGKVLAKQLGRNVEAYIDDIVVKSKQAFTHGKDLQETFENLRKCSVKLNP 1195
Query: 1392 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 1451
KC FGVR+GKLLGF+VS++GIE +PDK+ AI +M P+ ++V+ GR+ +SRF+S
Sbjct: 1196 EKCVFGVRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRFLSK 1255
Query: 1452 MTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDES 1511
P FK LR W ECQ+AFD +K YL E P L P +G+PL+MY+A +
Sbjct: 1256 SAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMYVAATPAT 1315
Query: 1512 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWL 1571
+ VL Q++E ++ +Y++S+ +TRY+ +EK A+ A+++LRHY ++H +
Sbjct: 1316 VSAVLVQEEE--NRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMASRKLRHYFLSHDITI 1373
Query: 1572 ISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPI 1631
S PI + V G+IA+W M L +D+ + ++ AIK +LAD +A ++ P
Sbjct: 1374 PSAY-PIGEVLTNKEVAGRIAKWAMELLPFDLKYISRTAIKSQVLADFVA-----EWTPN 1427
Query: 1632 EFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIP 1691
E + + ++ ++P W + DGA NA G G AV+ +P +
Sbjct: 1428 EVE---------QQEEVKKP-----------WIVFSDGACNAAGAGAAAVVKTPMKQTLK 1467
Query: 1692 FTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIP 1751
++ +++F TNN AEYE + + +A + + L + DS LV +E +
Sbjct: 1468 YSVQLVFPSTNNTAEYEGVLLAMRKARALGARRLIVKTDSKLVAGHFSKSFEAKEETMAK 1527
Query: 1752 YRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFR--VNHWNDVPLIKVQRLERPS 1809
Y + AR +F + + I R+EN AD LA ++ + N + D+ + +PS
Sbjct: 1528 YLEEARLNEKHFLGITVKAITREENGEADELAKAAATGQPLENSFFDI-------ITQPS 1580
Query: 1810 HVFAIGDVIDQAGENVVDCKPWYYDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDV 1869
+ I + G+ W I ++L+S + P +++ K ++ ++ ++ +
Sbjct: 1581 YEKKEVACIQREGD-------WREPILKYLVSAQLP--EKEEEAKRIQLMSKKYKVVEGQ 1631
Query: 1870 LYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQ 1929
LYK LL+CV E +++ ++H+G G H +++ K++R G YW + D +
Sbjct: 1632 LYKSGVTAPLLKCVTREEGMKMVVEIHEGLCGAHQAPWSVASKVIRQGIYWPTIMKDTEK 1691
Query: 1930 YARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 1989
Y + C CQ + PP L I WPF WGID++G + P+A RF++VAI+YF
Sbjct: 1692 YIKTCKACQKFGPMTKAPPKELQPIPPVWPFYRWGIDIVGPL-PRAKGDLRFVIVAIEYF 1750
Query: 1990 TKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 2049
++W+EA + +T V KF+ NIICR+G+P +I+ DNG + Q +C+ ++ +
Sbjct: 1751 SRWIEAEAVARITSAAVQKFVWKNIICRFGIPKEIVCDNGKQFESGKFQDMCKGLNLQIN 1810
Query: 2050 NSSPYRPQMNGAVEAANKNIKRIVQKMV--TTYKDWHEMLPYALHGYRTTVRSSTGATPF 2107
+S PQ NG VE AN I ++K + + W E L L RTTV STG TPF
Sbjct: 1811 FASVGHPQTNGVVERANGKIMEAIKKRLEGSAKGKWPEDLLSVLWALRTTVVRSTGMTPF 1870
Query: 2108 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQAR 2167
LVYG EA+ P EV S R+I + K E R L +++E R++A+ + SY
Sbjct: 1871 RLVYGDEAMTPSEVGAHSPRMIFDQKDEE-----GREITLEMLDEIRVEALEKMASYTEG 1925
Query: 2168 MKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMD 2227
K+ +++KV R + G+LVLK+ +++ GK +EGP++VKK GA L ++D
Sbjct: 1926 TKSYYNQKVKTRPIEEGDLVLKKVLNEV--AVGKLESKWEGPFIVKKKTETGAFKLAYLD 1983
Query: 2228 GVELPNPVNADIVKKYFA 2245
G EL + NA +KK++A
Sbjct: 1984 GEELKHTWNAVSLKKFYA 2001
Score = 45.4 bits (106), Expect = 0.022
Identities = 33/144 (22%), Positives = 64/144 (43%), Gaps = 4/144 (2%)
Query: 813 FSEEELPEVGKSHNLALHISVNCKSDMISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRS 872
F E+ + H L +SV + VL+D GSS +V+ ++ L +
Sbjct: 760 FGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNA 819
Query: 873 TFLVKAFDGSRKNVLGEIDLPITIGPENFL----VTFQVMDINASYSCLLGRPWIHDAGA 928
++ F G + + +G+I L + G + + F V+D+ Y+ +LGR I+ A
Sbjct: 820 GVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIFEA 879
Query: 929 VTSTLHQKLKFVKNGKLVTIHGEE 952
+ + +K ++T+ GE+
Sbjct: 880 IIHHNYICMKLPGLRGVITVRGEQ 903
>ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46391119|gb|AAS90646.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1991
Score = 699 bits (1803), Expect = 0.0
Identities = 406/1139 (35%), Positives = 612/1139 (53%), Gaps = 53/1139 (4%)
Query: 1117 PYEITRLLEQEKKAIQSHQEEIELINIGTEENKRE-IKIGATLEEGVKQKIIQLLREYPD 1175
P + L K+A+ +E ++ + RE I++ AT E +I L+ D
Sbjct: 896 PRGVLTLRSDIKQAVTCDKESCDMAQTREMASAREEIRLAATTESA----LITFLQNNKD 951
Query: 1176 IFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMT 1235
IFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 952 IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKE 1011
Query: 1236 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1295
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D
Sbjct: 1012 VLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLD 1071
Query: 1296 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1355
+SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE
Sbjct: 1072 CYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVE 1131
Query: 1356 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1415
YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1132 AYVDDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQA 1191
Query: 1416 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDEC 1475
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1192 NPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEA 1251
Query: 1476 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYY 1531
Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K + IY+
Sbjct: 1252 QKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYF 1311
Query: 1532 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1591
+S+ D +TRY ++K + ++L HY H+ +++ P+ + G+I
Sbjct: 1312 VSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRI 1370
Query: 1592 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEP 1651
A+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1371 AKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--------- 1416
Query: 1652 LINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1711
W + FDG+ G G G V++SP G + + I F ++N+AEYEA +
Sbjct: 1417 -----------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1465
Query: 1712 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHI 1771
G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H+
Sbjct: 1466 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1525
Query: 1772 PRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDCKPW 1831
R N+ AD LA S R +DV V+ L P+ + + + W
Sbjct: 1526 LRHNNEAADRLANFGSK-REAAPSDV---FVEHLYSPTVPHKDATQVADTHDIAMVEADW 1581
Query: 1832 YYDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEAEQL 1891
+ +FL S+E P K + + + R + +++ LYK++ +L RCV E QL
Sbjct: 1582 REPLIRFLTSQELP--QYKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQL 1639
Query: 1892 MHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHAL 1951
+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P L
Sbjct: 1640 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1699
Query: 1952 NVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIK 2011
I WPF++WG+DM+G + KA G+ + +AID F+KW+EA +T F
Sbjct: 1700 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFMAIDKFSKWIEAKPVVTITADNARDFF- 1757
Query: 2012 NNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-- 2069
NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I
Sbjct: 1758 INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1817
Query: 2070 ---KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2126
R+ ++ W LP L RTT +TG +PF LVYG EA+LP EVE SL
Sbjct: 1818 RIKARVFDRLKPYAGKWVSQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1877
Query: 2127 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGEL 2186
R E + + R D L+ +EE R A+ + Y ++ ++ V R F VG+L
Sbjct: 1878 RF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDL 1934
Query: 2187 VLKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2245
VL++ Q R K +P +EGP+++ + G+ L DG + N N + +++++A
Sbjct: 1935 VLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHIRRFYA 1991
Score = 51.6 bits (122), Expect = 3e-04
Identities = 58/250 (23%), Positives = 105/250 (41%), Gaps = 30/250 (12%)
Query: 174 KVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYT 233
+VD P FK ++Y+G T P++ + Y + ++ M + +L + A W
Sbjct: 432 RVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLH 491
Query: 234 SLSKNDIHTFDELATAFKSHYGFNTRLRPNREF-LRSLSQKKEESFREYAQRWRGAAARI 292
L + I ++ EL F +++ T RP ++ L ++ QK ES REY +R+ +I
Sbjct: 492 GLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESLREYIRRFSEQRNKI 550
Query: 293 TPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 352
+ D + + F K ++ + + P T+ E+A + KAE +
Sbjct: 551 SDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKANE-----YAKAEDA 599
Query: 353 VNASKRY---------------GNGHHKKKETEVGMVSAGAGQSMATVAPINAAQ--MPP 395
V ASK+ G+ +HK ++ + + A A S + +N M
Sbjct: 600 VTASKQSGPSWKPKNTPATGGGGSNNHKDRKRKPEELVATAAHSSRQRSRVNTFDKIMNS 659
Query: 396 SYPYMPYSQH 405
P+ P S H
Sbjct: 660 QCPHHPNSNH 669
Score = 49.3 bits (116), Expect = 0.002
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 840 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 898
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKSSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 899 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGE 951
ENF ++F+V D +Y +LGRP + AV + +K ++T+ +
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLTLRSD 905
>ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa
(japonica cultivar-group)]
Length = 2013
Score = 696 bits (1797), Expect = 0.0
Identities = 411/1136 (36%), Positives = 609/1136 (53%), Gaps = 56/1136 (4%)
Query: 1127 EKKAIQSHQEEIELINIGTEENK-REIKIGATLEEGVKQKIIQLLREYP-------DIFA 1178
+ + + S +E+I L E + KI + E K K I L P DIFA
Sbjct: 917 QTREMASAREDIRLAAATASEGEVPATKISKSGESEAKTKKIPLDPSDPTKTANNKDIFA 976
Query: 1179 WSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEY 1238
W DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +
Sbjct: 977 WKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLH 1036
Query: 1239 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 1298
P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D +S
Sbjct: 1037 PDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYS 1096
Query: 1299 GYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYV 1358
GY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE YV
Sbjct: 1097 GYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYV 1156
Query: 1359 DDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1418
DD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+
Sbjct: 1157 DDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPE 1216
Query: 1419 KVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEA 1478
KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E Q+A
Sbjct: 1217 KVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKA 1276
Query: 1479 FDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSK 1534
F+ K L EPP+L P PL++Y++ + + VL +++E G K + IY++S+
Sbjct: 1277 FEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSE 1336
Query: 1535 KFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARW 1594
D +TRY ++K + ++L HY H+ +++ P+ I V G+IA+W
Sbjct: 1337 VLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREVNGRIAKW 1395
Query: 1595 QMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIN 1654
+ L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1396 ALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH------------ 1438
Query: 1655 EGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 1714
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+
Sbjct: 1439 --------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGL 1490
Query: 1715 EEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRD 1774
AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H+ R
Sbjct: 1491 RIAISLGIKRLIVRGDSQLVVNQVMKEWSYLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1550
Query: 1775 ENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDCKPWYYD 1834
N+ AD LA S R +DV V+ L P+ + + + W
Sbjct: 1551 NNEAADRLANFGSK-REAAPSDV---FVEHLYTPTVPHKDTTQVAGTHDAAMVEVDWREP 1606
Query: 1835 IKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEAEQLMHD 1894
+ +FL S+E P K + + + R + ++L LYK++ +L RCV E QL+ D
Sbjct: 1607 LIRFLTSQELP--QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEEGRQLLKD 1664
Query: 1895 VHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVI 1954
+H G G HA T+ K R G++W D + R C CQ +A +IH+P L I
Sbjct: 1665 IHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTI 1724
Query: 1955 SSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNI 2014
WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F NI
Sbjct: 1725 PLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INI 1782
Query: 2015 ICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI----- 2069
+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I
Sbjct: 1783 VHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIK 1842
Query: 2070 KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVI 2129
R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1843 ARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF- 1901
Query: 2130 MEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGELVLK 2189
E + + R D L+ +EE R A+ R Y ++ ++ V R F VG+LVL+
Sbjct: 1902 --RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLR 1959
Query: 2190 RRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2245
+ Q R K +P +EGP+++ + G+ L DG + N N + +++++A
Sbjct: 1960 K--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFYA 2013
Score = 50.8 bits (120), Expect = 5e-04
Identities = 57/251 (22%), Positives = 105/251 (41%), Gaps = 31/251 (12%)
Query: 174 KVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYT 233
+VD P FK ++Y+G T P++ + Y + ++ M + +L + A W
Sbjct: 427 RVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLH 486
Query: 234 SLSKNDIHTFDELATAFKSHYGFNTRLRPNREF-LRSLSQKKEESFREYAQRWRGAAARI 292
L + I ++ EL F +++ T RP ++ L ++ QK ES R+Y +R+ +I
Sbjct: 487 GLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKI 545
Query: 293 TPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 352
+ D + + F K ++ + + P T+ E+A + KAE +
Sbjct: 546 SDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKANE-----YAKAEDA 594
Query: 353 VNASKRY----------------GNGHHKKKETEVGMVSAGAGQSMATVAPINAAQ--MP 394
V ASK+ G+ +HK ++ + + A A S + +N M
Sbjct: 595 VTASKQSGPSWKQNKGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRSRVNTFDKIMN 654
Query: 395 PSYPYMPYSQH 405
P+ P S H
Sbjct: 655 SQCPHHPNSNH 665
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 840 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 898
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 785 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 844
Query: 899 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 938
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 845 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 888
>ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultivar-group)]
gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza
sativa (japonica cultivar-group)]
Length = 2010
Score = 696 bits (1797), Expect = 0.0
Identities = 410/1138 (36%), Positives = 609/1138 (53%), Gaps = 60/1138 (5%)
Query: 1127 EKKAIQSHQEEIELINIGTEENKREI-KIGATLEEGVKQKIIQLLREYP-------DIFA 1178
+ + + S +E+I L E + KI + E K K I L P DIFA
Sbjct: 914 QTREMASAREDIRLAAATASEGEEPATKISKSGESEAKTKKIPLDPSDPAKTANNKDIFA 973
Query: 1179 WSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEY 1238
W DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +
Sbjct: 974 WKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLH 1033
Query: 1239 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 1298
P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D +S
Sbjct: 1034 PDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGRELLSFLDCYS 1093
Query: 1299 GYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYV 1358
GY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE YV
Sbjct: 1094 GYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYV 1153
Query: 1359 DDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1418
DD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKL+GF+VS +GI+ +P+
Sbjct: 1154 DDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLVGFMVSHRGIQANPE 1213
Query: 1419 KVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEA 1478
KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E Q+A
Sbjct: 1214 KVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKA 1273
Query: 1479 FDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSK 1534
F+ K L EPP+L P PL++Y++ + + VL +++E G K + IY++S+
Sbjct: 1274 FEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSE 1333
Query: 1535 KFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARW 1594
D +TRY ++K + ++L HY H+ +++ P+ I G+IA+W
Sbjct: 1334 VLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKW 1392
Query: 1595 QMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIN 1654
+ L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1393 ALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH------------ 1435
Query: 1655 EGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 1714
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+
Sbjct: 1436 --------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGL 1487
Query: 1715 EEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRD 1774
AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H+ R
Sbjct: 1488 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1547
Query: 1775 ENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDC--KPWY 1832
N+ AD LA S V + + V+ L P+ D AG + V W
Sbjct: 1548 NNEAADRLANFGSKREVAPSD----VFVEHLYTPT--VPHKDTTQVAGTHDVAMVETDWR 1601
Query: 1833 YDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEAEQLM 1892
+ +FL S+E P K + + + R + +++ LYK++ +L RCV E QL+
Sbjct: 1602 EPLIRFLTSQELP--QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLL 1659
Query: 1893 HDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALN 1952
D+H G G HA T+ K R G++W D + R C CQ +A +IH+P L
Sbjct: 1660 QDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQ 1719
Query: 1953 VISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKN 2012
I WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1720 TIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-I 1777
Query: 2013 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI--- 2069
NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I
Sbjct: 1778 NIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQG 1837
Query: 2070 --KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLR 2127
R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1838 IKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLR 1897
Query: 2128 VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGELV 2187
E + + R D L+ +EE R A+ R Y ++ ++ V R F VG+LV
Sbjct: 1898 F---RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLV 1954
Query: 2188 LKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2245
L++ Q R K +P +EGP+++ + G+ L DG + N N + +++++A
Sbjct: 1955 LRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFYA 2010
Score = 50.4 bits (119), Expect = 7e-04
Identities = 48/197 (24%), Positives = 89/197 (44%), Gaps = 13/197 (6%)
Query: 174 KVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYT 233
+VD P FK ++Y+G T P++ + Y + ++ M + +L + A W
Sbjct: 424 RVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLH 483
Query: 234 SLSKNDIHTFDELATAFKSHYGFNTRLRPNREF-LRSLSQKKEESFREYAQRWRGAAARI 292
L + I ++ EL F +++ T RP ++ L ++ QK ES R+Y +R+ +I
Sbjct: 484 GLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKI 542
Query: 293 TPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 352
+ D + + F K ++ + + P +T+ E+A + KAE +
Sbjct: 543 SDITD-DVIIAAFTKGIRHEELVGKFGRKP-----PMTVKLMFEKANE-----YAKAEDA 591
Query: 353 VNASKRYGNGHHKKKET 369
V ASK+ G + K T
Sbjct: 592 VTASKQSGPSWKQNKGT 608
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 840 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 898
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 782 LRRTLIDGGSALNILFAKTLDDMQIPHSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 841
Query: 899 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 938
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 842 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 885
>ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2012
Score = 693 bits (1788), Expect = 0.0
Identities = 400/1082 (36%), Positives = 590/1082 (53%), Gaps = 52/1082 (4%)
Query: 1175 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1234
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 972 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1031
Query: 1235 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1294
V +P+W+AN V V KK G+ MCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 1032 EVLHPDWLANPVLVRKKTGQWLMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1091
Query: 1295 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1354
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1092 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1151
Query: 1355 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1414
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1152 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1211
Query: 1415 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDE 1474
+P+KV AI M +P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1212 ANPEKVTAILNMKSPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDSFRWGPE 1271
Query: 1475 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1530
Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G K + IY
Sbjct: 1272 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1331
Query: 1531 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1590
++S+ D +TRY ++K + ++L HY H+ +++ P+ I G+
Sbjct: 1332 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1390
Query: 1591 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1650
IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1391 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1437
Query: 1651 PLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1710
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1438 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1485
Query: 1711 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 1770
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1486 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1545
Query: 1771 IPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDC-- 1828
+ R N+ AD LA S R +DV V+ L P+ D AG + V
Sbjct: 1546 VLRHNNEAADRLANFGSK-REAAPSDV---FVEHLYSPT--VPHKDATQAAGAHDVAMVE 1599
Query: 1829 KPWYYDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEA 1888
W + +FL S+E P K + + + R + ++L LYK++ +L RCV E
Sbjct: 1600 ADWREPLIRFLTSQELP--QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEEG 1657
Query: 1889 EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPP 1948
QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P
Sbjct: 1658 RQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPA 1717
Query: 1949 HALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 2008
L I WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1718 QELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARD 1776
Query: 2009 FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKN 2068
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1777 FF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGM 1835
Query: 2069 I-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 2123
I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1836 ILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTSSRATGQSPFFLVYGAEAMLPSEVEF 1895
Query: 2124 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKV 2183
SLR E + + R D L+ +EE R A+ R Y ++ ++ V R F V
Sbjct: 1896 ESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFLV 1952
Query: 2184 GELVLKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 2243
G+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + ++++
Sbjct: 1953 GDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRF 2010
Query: 2244 FA 2245
+A
Sbjct: 2011 YA 2012
Score = 50.8 bits (120), Expect = 5e-04
Identities = 57/251 (22%), Positives = 105/251 (41%), Gaps = 31/251 (12%)
Query: 174 KVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYT 233
+VD P FK ++Y+G T P++ + Y + ++ M + +L + A W
Sbjct: 426 RVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLH 485
Query: 234 SLSKNDIHTFDELATAFKSHYGFNTRLRPNREF-LRSLSQKKEESFREYAQRWRGAAARI 292
L + I ++ EL F +++ T RP ++ L ++ QK ES R+Y +R+ +I
Sbjct: 486 GLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKI 544
Query: 293 TPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 352
+ D + + F K ++ + + P T+ E+A + KAE +
Sbjct: 545 SDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKANE-----YAKAEDA 593
Query: 353 VNASKRY----------------GNGHHKKKETEVGMVSAGAGQSMATVAPINAAQ--MP 394
V ASK+ G+ +HK ++ + + A A S + +N M
Sbjct: 594 VTASKQSGPSWKQNKGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRSRVNTFDKIMN 653
Query: 395 PSYPYMPYSQH 405
P+ P S H
Sbjct: 654 SQCPHHPNSNH 664
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 840 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 898
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 784 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 843
Query: 899 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 938
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 844 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 887
>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 693 bits (1788), Expect = 0.0
Identities = 409/1138 (35%), Positives = 607/1138 (52%), Gaps = 60/1138 (5%)
Query: 1127 EKKAIQSHQEEIELINIGTEENK-REIKIGATLEEGVKQKIIQLLREYP-------DIFA 1178
+ + + S +E+I L E + K + E K K I L P DIFA
Sbjct: 921 QTREMASAREDIRLAAATASEGEVPATKTSKSGESEAKTKKIPLDPSNPTKTANNKDIFA 980
Query: 1179 WSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEY 1238
W DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +
Sbjct: 981 WKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVHH 1040
Query: 1239 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 1298
P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D +S
Sbjct: 1041 PDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYS 1100
Query: 1299 GYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYV 1358
GY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE YV
Sbjct: 1101 GYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYV 1160
Query: 1359 DDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1418
DD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+
Sbjct: 1161 DDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPE 1220
Query: 1419 KVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEA 1478
KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E Q+A
Sbjct: 1221 KVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKA 1280
Query: 1479 FDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSK 1534
F+ K L EPP+L P PL++Y++ + + VL +++E G K + IY++S+
Sbjct: 1281 FEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSE 1340
Query: 1535 KFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARW 1594
D +TRY ++K + ++L HY H+ +++ P+ I G+IA+W
Sbjct: 1341 VLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKW 1399
Query: 1595 QMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIN 1654
+ L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1400 ALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH------------ 1442
Query: 1655 EGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 1714
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+
Sbjct: 1443 --------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGL 1494
Query: 1715 EEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRD 1774
AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H+ R
Sbjct: 1495 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1554
Query: 1775 ENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDC--KPWY 1832
N+ AD LA S V + + V+ L P+ D AG + V W
Sbjct: 1555 NNEAADRLANFGSKREVAPSD----VFVEHLYTPT--VPHKDTTQVAGTHDVAMVEADWR 1608
Query: 1833 YDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEAEQLM 1892
+ +FL S+E P K + + + R + +++ LYK++ +L RCV E QL+
Sbjct: 1609 EPLIRFLTSQELP--QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLL 1666
Query: 1893 HDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALN 1952
D+H G G HA T+ K R G++W D + R C CQ +A +IH+P L
Sbjct: 1667 KDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQ 1726
Query: 1953 VISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKN 2012
I WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1727 TIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAPDFF-I 1784
Query: 2013 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI--- 2069
NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE AN I
Sbjct: 1785 NIVHRFGVPNRIITDNGRQFTGGVFKDCCEDFGIKICYASVAHPMSNGQVERANGMILQG 1844
Query: 2070 --KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLR 2127
R+ ++ W E LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1845 IKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLR 1904
Query: 2128 VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGELV 2187
E + + R D L+ +EE R A+ + Y ++ ++ V R F VG+LV
Sbjct: 1905 F---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLV 1961
Query: 2188 LKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2245
L++ Q R K +P +EGP+++ G+ L DG + N N + +++++A
Sbjct: 1962 LRK--IQTTRDRHKLSPLWEGPFIISAVTRPGSYRLKREDGTLVDNSWNIEHLRRFYA 2017
Score = 53.5 bits (127), Expect = 8e-05
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 13/197 (6%)
Query: 174 KVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYT 233
+VD P FK ++Y+G T P++ + Y + + M + +L + A W
Sbjct: 431 RVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALADSARSWLH 490
Query: 234 SLSKNDIHTFDELATAFKSHYGFNTRLRPNREF-LRSLSQKKEESFREYAQRWRGAAARI 292
L + I ++ EL F +++ T RP +F L ++ QK ES R+Y +R+ +I
Sbjct: 491 GLPRGTIGSWAELRDHFIANFQ-GTFERPGTQFDLYNVVQKSGESLRDYIRRFSEQRNKI 549
Query: 293 TPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 352
+ D + + F K ++ + + P T+ E+A + KAE +
Sbjct: 550 SDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKANE-----YAKAEDA 598
Query: 353 VNASKRYGNGHHKKKET 369
V ASK+ G KK+T
Sbjct: 599 VTASKQSGPSWKPKKDT 615
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 840 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 898
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 899 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 938
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533012|ref|NP_920808.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881590|gb|AAM00991.1| Putative retroelement [Oryza
sativa]
Length = 2017
Score = 692 bits (1787), Expect = 0.0
Identities = 412/1141 (36%), Positives = 607/1141 (53%), Gaps = 66/1141 (5%)
Query: 1127 EKKAIQSHQEEIELINIGTEENK-REIKIGATLEEGVKQKIIQL-------LREYPDIFA 1178
+ + + S +E+I L E + KI + E K K I L DIFA
Sbjct: 921 QTREMASAREDIRLAAATASEGEVPATKISKSGESEAKTKKIPLDPSDSTKTANNKDIFA 980
Query: 1179 WSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEY 1238
W DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +
Sbjct: 981 WKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLH 1040
Query: 1239 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 1298
P+W+AN V V KK G+ RMCVD+ DLNK PKD F LP ID +VD+TA ++ SF+D +S
Sbjct: 1041 PDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFLDCYS 1100
Query: 1299 GYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYV 1358
GY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE YV
Sbjct: 1101 GYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYV 1160
Query: 1359 DDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1418
DD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+
Sbjct: 1161 DDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPE 1220
Query: 1419 KVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEA 1478
KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E Q+A
Sbjct: 1221 KVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFHWGPEAQKA 1280
Query: 1479 FDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSK 1534
F+ K L EPP+L P PL++Y++ + + VL +++E G K + IY++S+
Sbjct: 1281 FEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEDGHVQKVQRPIYFVSE 1340
Query: 1535 KFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARW 1594
D +TRY ++K + ++L HY H +++ P+ I G+IA+W
Sbjct: 1341 VLADSKTRYPQVQKLLYGILITTRKLSHYFQGHLVTVVTSF-PLGDILHNREANGRIAKW 1399
Query: 1595 QMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIN 1654
+ L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1400 ALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKVEH------------ 1442
Query: 1655 EGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 1714
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+
Sbjct: 1443 --------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGL 1494
Query: 1715 EEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRD 1774
AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H+ R
Sbjct: 1495 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1554
Query: 1775 ENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDC--KPWY 1832
N+ AD LA S V + + V+ L P+ D AG + V W
Sbjct: 1555 NNKAADRLANFGSKREVAPSD----VFVEHLYAPT--VPHKDTTQVAGTHDVAMVEADWR 1608
Query: 1833 YDIKQFLLSREYPPGASKQDKKTLRRLASR---FLLDGDVLYKRNYDMVLLRCVDEHEAE 1889
+ +FL S+E P QDK R++ R +++ LYK++ +L RCV E
Sbjct: 1609 EPLIRFLTSQELP-----QDKDEAERISRRSRLYVMHEAELYKKSPSGILQRCVSLEEGR 1663
Query: 1890 QLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPH 1949
QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P
Sbjct: 1664 QLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQ 1723
Query: 1950 ALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKF 2009
L I WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1724 ELQTIPLSWPFAVWGLDMVGPFK-KAFGGYTHLFVAIDKFSKWIEAKPVVTITADNARDF 1782
Query: 2010 IKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI 2069
NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE AN I
Sbjct: 1783 F-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMI 1841
Query: 2070 -----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIP 2124
R+ ++ W E LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1842 LQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFE 1901
Query: 2125 SLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVG 2184
SLR E + + R D L+ +EE R A+ + Y ++ ++ V R F VG
Sbjct: 1902 SLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVG 1958
Query: 2185 ELVLKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2244
+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +++++
Sbjct: 1959 DLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLIDNSWNIEHLRRFY 2016
Query: 2245 A 2245
A
Sbjct: 2017 A 2017
Score = 49.7 bits (117), Expect = 0.001
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 13/197 (6%)
Query: 174 KVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYT 233
+VD P FK ++Y+G T P++ + Y + + M + +L + A W
Sbjct: 431 RVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALADSARSWLH 490
Query: 234 SLSKNDIHTFDELATAFKSHYGFNTRLRPNREF-LRSLSQKKEESFREYAQRWRGAAARI 292
L + I ++ EL F +++ T RP ++ L ++ QK ES R+Y +R+ +I
Sbjct: 491 GLPRGTIESWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKI 549
Query: 293 TPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 352
+ D + + F K ++ + + P T+ E+A + KAE +
Sbjct: 550 SDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKANE-----YAKAEDA 598
Query: 353 VNASKRYGNGHHKKKET 369
V ASK+ G K T
Sbjct: 599 VTASKQSGPSWKPNKGT 615
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 840 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 898
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 899 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 938
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531820|ref|NP_920212.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128689|gb|AAM92802.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 691 bits (1784), Expect = 0.0
Identities = 409/1138 (35%), Positives = 608/1138 (52%), Gaps = 60/1138 (5%)
Query: 1127 EKKAIQSHQEEIELINIGTEENK-REIKIGATLEEGVKQKIIQLLREYP-------DIFA 1178
+ + + S +E+I L E + KI + E K K I L P DIFA
Sbjct: 921 QTREMASAREDIRLAAATASEGEVPATKISKSGESEAKTKKIPLDPSDPTKTANNKDIFA 980
Query: 1179 WSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEY 1238
W DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +
Sbjct: 981 WKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLH 1040
Query: 1239 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 1298
P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D +S
Sbjct: 1041 PDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYS 1100
Query: 1299 GYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYV 1358
GY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE YV
Sbjct: 1101 GYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYV 1160
Query: 1359 DDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1418
DD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+
Sbjct: 1161 DDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPE 1220
Query: 1419 KVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEA 1478
KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E Q+A
Sbjct: 1221 KVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKA 1280
Query: 1479 FDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG-QQDETG---KKEHAIYYLSK 1534
F+ K L EPP+L P PL++Y++ + + VL +++E G K + IY++S+
Sbjct: 1281 FEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSE 1340
Query: 1535 KFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARW 1594
D +TRY ++K + ++L HY H+ +++ P+ I G+IA+W
Sbjct: 1341 VLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKW 1399
Query: 1595 QMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIN 1654
+ L D+ FK + +IK LAD +A + +C+E
Sbjct: 1400 ALELMSLDLSFKPRISIKSQALADFVA----------------------EWTECQEDTTV 1437
Query: 1655 EGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 1714
+ + W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+
Sbjct: 1438 KKME---HWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGL 1494
Query: 1715 EEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRD 1774
AI + IK L + GDS LV+NQ+ EW + YR R+L F +EL H+ R
Sbjct: 1495 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMKAYRQEVRKLEDKFDGLELSHVLRH 1554
Query: 1775 ENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDC--KPWY 1832
+N+ AD LA S V + + V+ L P+ D AG + V W
Sbjct: 1555 DNEAADRLANFGSKREVAPSD----VFVEHLYTPT--VPHKDTTQAAGIHDVAMVETDWR 1608
Query: 1833 YDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEAEQLM 1892
+ +FL S+E P K + + + R + +++ LYK++ +L RCV E QL+
Sbjct: 1609 EPLIRFLTSQELP--QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLL 1666
Query: 1893 HDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALN 1952
D+H G G HA T+ K R G++W D + R C CQ +A +IH+P L
Sbjct: 1667 KDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQ 1726
Query: 1953 VISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKN 2012
I WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1727 TIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-I 1784
Query: 2013 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI--- 2069
NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I
Sbjct: 1785 NIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQG 1844
Query: 2070 --KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLR 2127
R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1845 IKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLR 1904
Query: 2128 VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGELV 2187
E + + R D L+ +EE R A+ R Y ++ ++ V R F VG+LV
Sbjct: 1905 F---RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLV 1961
Query: 2188 LKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2245
L++ Q R K +P +EGP+++ + G+ L DG + N N + +++++A
Sbjct: 1962 LRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEYLRRFYA 2017
Score = 51.2 bits (121), Expect = 4e-04
Identities = 67/296 (22%), Positives = 118/296 (39%), Gaps = 36/296 (12%)
Query: 131 RSIPVTKTMEEMMEELAKELRHEIQANRGSADSVK--TQDLCLVSKVDVPKKFKIPDFDR 188
R PV + A+ H + D V T DL +VD P FK ++
Sbjct: 389 RRRPVDLRDTIIQRRAARGYHHSPNRHDDDLDGVAAFTDDL---RRVDWPAGFKPTGIEK 445
Query: 189 YNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAT 248
Y+G T P++ + Y + ++ M + +L + A W L + I ++ EL
Sbjct: 446 YDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLHGLPRGTIGSWAELRD 505
Query: 249 AFKSHYGFNTRLRPNREF-LRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLK 307
F +++ T RP ++ L ++ QK ES R+Y +R+ +I+ D + + F K
Sbjct: 506 HFIANFQ-GTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISDITD-DVIIAAFTK 563
Query: 308 TLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESSVNASKRY-------- 359
++ + + P T+ E+A + KAE +V ASK+
Sbjct: 564 GIRHEELVGKFGRKPPR-----TVKLMFEKANE-----YAKAEDAVTASKQSGPSWKQNK 613
Query: 360 --------GNGHHKKKETEVGMVSAGAGQSMATVAPINAAQ--MPPSYPYMPYSQH 405
G+ +HK ++ + + A A S + +N M P+ P S H
Sbjct: 614 GTPATGGGGSNNHKDRKRKPAELVATASHSSRQRSRVNTFDKIMNSQCPHHPNSNH 669
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 840 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 898
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 899 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 938
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1950
Score = 691 bits (1784), Expect = 0.0
Identities = 398/1082 (36%), Positives = 588/1082 (53%), Gaps = 52/1082 (4%)
Query: 1175 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1234
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 910 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 969
Query: 1235 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1294
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 970 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1029
Query: 1295 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1354
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1030 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1089
Query: 1355 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1414
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1090 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1149
Query: 1415 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDE 1474
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1150 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPE 1209
Query: 1475 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1530
Q+AF+ K L EPPIL P PL++Y++ + + VL +++E G K + IY
Sbjct: 1210 AQKAFEDFKKLLTEPPILASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1269
Query: 1531 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1590
++S+ D +TRY ++K + ++L HY H+ +++ P+ I G+
Sbjct: 1270 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1328
Query: 1591 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1650
IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1329 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1375
Query: 1651 PLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1710
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1376 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1423
Query: 1711 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 1770
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1424 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1483
Query: 1771 IPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPS--HVFAIGDVIDQAGENVVDC 1828
+ R N+ AD LA S + + + V+ L P+ H D D +V+
Sbjct: 1484 VLRHNNEAADRLANFGSKREMAPSD----VFVEHLYTPTVPHKDTTQDA-DTHDVALVEA 1538
Query: 1829 KPWYYDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEA 1888
W +FL S+E P K + + + R + + + LYK++ +L RCV E
Sbjct: 1539 -DWREPFIRFLTSQELP--QDKDEAERISRRSKLYAMHEAELYKKSPSGILQRCVSLEEG 1595
Query: 1889 EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPP 1948
QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P
Sbjct: 1596 RQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPA 1655
Query: 1949 HALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 2008
L I WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1656 QELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARD 1714
Query: 2009 FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKN 2068
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1715 FF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGM 1773
Query: 2069 I-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 2123
I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1774 ILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEF 1833
Query: 2124 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKV 2183
SLR E + + R D L+ +EE R A+ R Y ++ ++ V R F V
Sbjct: 1834 ESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFLV 1890
Query: 2184 GELVLKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 2243
G+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + ++++
Sbjct: 1891 GDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRF 1948
Query: 2244 FA 2245
+A
Sbjct: 1949 YA 1950
Score = 50.8 bits (120), Expect = 5e-04
Identities = 57/251 (22%), Positives = 105/251 (41%), Gaps = 31/251 (12%)
Query: 174 KVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYT 233
+VD P FK ++Y+G T P++ + Y + ++ M + +L + A W
Sbjct: 364 RVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLH 423
Query: 234 SLSKNDIHTFDELATAFKSHYGFNTRLRPNREF-LRSLSQKKEESFREYAQRWRGAAARI 292
L + I ++ EL F +++ T RP ++ L ++ QK ES R+Y +R+ +I
Sbjct: 424 GLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKI 482
Query: 293 TPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 352
+ D + + F K ++ + + P T+ E+A + KAE +
Sbjct: 483 SDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKANE-----YTKAEDA 531
Query: 353 VNASKRY----------------GNGHHKKKETEVGMVSAGAGQSMATVAPINAAQ--MP 394
V ASK+ G+ +HK ++ + + A A S + +N M
Sbjct: 532 VTASKQSGPSWKQNKGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRSRVNTFDKIMN 591
Query: 395 PSYPYMPYSQH 405
P+ P S H
Sbjct: 592 SQCPHHPNSNH 602
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 840 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 898
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 722 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 781
Query: 899 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 938
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 782 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 825
>ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1756
Score = 690 bits (1781), Expect = 0.0
Identities = 407/1138 (35%), Positives = 607/1138 (52%), Gaps = 60/1138 (5%)
Query: 1127 EKKAIQSHQEEIEL-INIGTEENKREIKIGATLEEGVKQKIIQL-------LREYPDIFA 1178
+ + + S +E+I L + +E KI + E K K I L DIFA
Sbjct: 660 QTREMASAREDIRLAVATASEGEVPATKISKSGESEAKTKKIPLDPSDSTKTANNKDIFA 719
Query: 1179 WSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEY 1238
W DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +
Sbjct: 720 WKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFVQDRKDAIKEELTKLLAAGFIKEVLH 779
Query: 1239 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 1298
P+W+AN V V KK G+ RMCVD+ DLNK PKD F LP ID +VD+TA ++ SF+D +S
Sbjct: 780 PDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFLDCYS 839
Query: 1299 GYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYV 1358
GY+QI++ D KTSFITP G +CY MPFGL NAGATYQR + F I + VE YV
Sbjct: 840 GYHQIRLKESDCLKTSFITPIGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYV 899
Query: 1359 DDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1418
DD+++K+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+
Sbjct: 900 DDVVIKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPE 959
Query: 1419 KVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEA 1478
KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E Q+A
Sbjct: 960 KVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKA 1019
Query: 1479 FDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSK 1534
F+ K +L EPP+L P PL++Y++ + + VL +++E G K + IY++S+
Sbjct: 1020 FEDFKKFLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSE 1079
Query: 1535 KFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARW 1594
D +TRY ++K + ++L HY H+ +++ P+ I G+IA+W
Sbjct: 1080 VLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKW 1138
Query: 1595 QMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIN 1654
+ L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1139 ALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH------------ 1181
Query: 1655 EGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 1714
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+
Sbjct: 1182 --------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGL 1233
Query: 1715 EEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRD 1774
AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H+ R
Sbjct: 1234 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1293
Query: 1775 ENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDC--KPWY 1832
N+ AD LA S V + + V+ L P+ D AG + V W
Sbjct: 1294 NNEAADRLANFGSKREVAPSD----VFVEHLYTPT--VPHKDTTQIAGTHDVALVEADWR 1347
Query: 1833 YDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEAEQLM 1892
+FL S+E P K + + + R + +++ LYK++ +L RCV E QL+
Sbjct: 1348 EPFIRFLTSQELP--QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLL 1405
Query: 1893 HDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALN 1952
D+H G G HA T+ K R G++W D + R C CQ +A +IH+P L
Sbjct: 1406 KDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQ 1465
Query: 1953 VISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKN 2012
I WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1466 TIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-I 1523
Query: 2013 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI--- 2069
NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE AN I
Sbjct: 1524 NIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQG 1583
Query: 2070 --KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLR 2127
R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1584 IKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLR 1643
Query: 2128 VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGELV 2187
E + + R D L+ +EE R A+ + Y ++ ++ V R F VG+LV
Sbjct: 1644 F---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLV 1700
Query: 2188 LKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2245
L++ Q R K +P +EGP+++ + G+ L DG + N N + +++++A
Sbjct: 1701 LRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFYA 1756
Score = 55.5 bits (132), Expect = 2e-05
Identities = 68/327 (20%), Positives = 128/327 (38%), Gaps = 29/327 (8%)
Query: 57 SADNRFTMPVGFPYGLPPFFTPVATASTSGTANNVLIPATNAAS-------IIATLPQTT 109
S +NR ++P G P +F ++ S + + T+ I+ LP
Sbjct: 43 SGENRISVPFGLPNAAESYFKTISIELASNHSGEIASSPTSPDQDDGAYPPILMKLPDDL 102
Query: 110 AAVTEPLVHILPQGININTQHRSIPVTKTMEEM------MEELAKELRHEIQANRGSADS 163
AAV+ + + S P++ + E+ + A+ ++ A +
Sbjct: 103 AAVS---ITTASPSRRPRQKSASTPISPSFREVGVILQPLRLAAESPTSDLMTTVIQASA 159
Query: 164 VKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDS 223
QD + V FK ++Y+G T P++ + Y + + M + +
Sbjct: 160 SPAQDPIAGAGVTTSAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVA 219
Query: 224 LMEDAAEWYTSLSKNDIHTFDELATAFKSHYGFNTRLRPNREF-LRSLSQKKEESFREYA 282
L + A W L + I ++ EL F +++ T RP ++ L ++ QK ES R+Y
Sbjct: 220 LADSARSWLHGLPRGTIRSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESLRDYI 278
Query: 283 QRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDG 342
+R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 279 RRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKANE-- 330
Query: 343 IIVFEKAESSVNASKRYGNGHHKKKET 369
+ KAE +V ASK+ G K T
Sbjct: 331 ---YAKAEDAVTASKQSGPSWKPNKGT 354
Score = 48.9 bits (115), Expect = 0.002
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 840 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 898
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 528 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 587
Query: 899 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGE 951
ENF ++F+V D +Y +LGRP + AV + +K +++++ +
Sbjct: 588 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRRVLSLRSD 644
>ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultivar-group)]
gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa
(japonica cultivar-group)]
Length = 2008
Score = 684 bits (1765), Expect = 0.0
Identities = 395/1089 (36%), Positives = 586/1089 (53%), Gaps = 62/1089 (5%)
Query: 1166 IIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQ 1225
+I L+ DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+
Sbjct: 973 LITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELT 1032
Query: 1226 KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNT 1285
K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+T
Sbjct: 1033 KLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDST 1092
Query: 1286 AQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 1345
A ++ SF+D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR +
Sbjct: 1093 AGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRC 1152
Query: 1346 FHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLG 1405
F I + VE YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLG
Sbjct: 1153 FSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFVSIRAFRMKLNPEKCTFGVPSGKLLG 1212
Query: 1406 FIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1465
F+VS +GI+ +P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K
Sbjct: 1213 FMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKK 1272
Query: 1466 NQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG-QQDETG- 1523
W E Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G
Sbjct: 1273 TDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLAVEREEEGH 1332
Query: 1524 --KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYI 1581
K + IY++S+ D +TRY ++K L H+ +++ P+ I
Sbjct: 1333 VQKVQRPIYFVSEVLADSKTRYPQVQK--------------LLYGHSVTVVTSF-PLGDI 1377
Query: 1582 FEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIM 1641
G+IA+W + L DI FK + +IK LAD +A ++ + D P E +
Sbjct: 1378 LHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENME 1432
Query: 1642 YLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECT 1701
+ W + FDG+ G G G V++SP G + + I F +
Sbjct: 1433 H--------------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSAS 1472
Query: 1702 NNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLT 1761
+N+AEYEA + G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L
Sbjct: 1473 HNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLED 1532
Query: 1762 YFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQA 1821
F +EL H+ R N+ AD LA S V + + V+ L P+ +
Sbjct: 1533 KFDGLELSHVLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGT 1588
Query: 1822 GENVVDCKPWYYDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLR 1881
+ V W + +FL S+E P K + + + R + +++ LYK++ +L R
Sbjct: 1589 HDVAVVETDWREPLIRFLTSQELP--QDKDEAERISRRSKLYVMHEAELYKKSPSGILQR 1646
Query: 1882 CVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYA 1941
CV E QL+ D+H G G HA T+ K R G++W D + R C CQ +A
Sbjct: 1647 CVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFA 1706
Query: 1942 DKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNV 2001
+IH+P L I WPF++WG+DM+G + KA G+ + VAID F+KW+EA +
Sbjct: 1707 RQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTI 1765
Query: 2002 TKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGA 2061
T F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG
Sbjct: 1766 TADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQ 1824
Query: 2062 VEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 2116
VE AN I R+ ++ W + LP L RTT +TG +PF LVYG EA+
Sbjct: 1825 VERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAM 1884
Query: 2117 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKV 2176
LP EVE SLR E + + R D L+ +EE R A+ R Y ++ ++ V
Sbjct: 1885 LPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNV 1941
Query: 2177 HPREFKVGELVLKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVN 2236
R F VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N N
Sbjct: 1942 RSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWN 1999
Query: 2237 ADIVKKYFA 2245
+ +++++A
Sbjct: 2000 IEHLRRFYA 2008
Score = 49.7 bits (117), Expect = 0.001
Identities = 67/296 (22%), Positives = 117/296 (38%), Gaps = 36/296 (12%)
Query: 131 RSIPVTKTMEEMMEELAKELRHEIQANRGSADSVK--TQDLCLVSKVDVPKKFKIPDFDR 188
R PV + A+ H + D V T DL +VD P FK ++
Sbjct: 385 RRRPVDLRDTIIQRRAARGYHHSPNRHDDDLDEVAAFTDDL---RRVDWPAGFKPTGIEK 441
Query: 189 YNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAT 248
Y+G T P + + Y + ++ M + +L + A W L + I ++ EL
Sbjct: 442 YDGTTNPGSWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLHGLPRGTIGSWAELRD 501
Query: 249 AFKSHYGFNTRLRPNREF-LRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLK 307
F +++ T RP ++ L ++ QK ES R+Y +R+ +I+ D + + F K
Sbjct: 502 HFIANFQ-GTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISDITD-DVIIAAFTK 559
Query: 308 TLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESSVNASKRY-------- 359
++ + + P T+ E+A + KAE +V ASK+
Sbjct: 560 GIRHEELVGKFGRKPPR-----TVKLMFEKANE-----YAKAEDAVTASKQSGPSWKQNK 609
Query: 360 --------GNGHHKKKETEVGMVSAGAGQSMATVAPINAAQ--MPPSYPYMPYSQH 405
G+ +HK ++ + + A A S + +N M P+ P S H
Sbjct: 610 GTPATGGGGSNNHKDRKRKPAELVATASHSSRQRSRVNTFDKIMNSQCPHHPNSNH 665
Score = 48.5 bits (114), Expect = 0.003
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 840 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 898
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 785 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 844
Query: 899 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 938
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 845 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 888
>gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37536646|ref|NP_922625.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
gi|13876521|gb|AAK43497.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
Length = 2017
Score = 682 bits (1760), Expect = 0.0
Identities = 404/1138 (35%), Positives = 605/1138 (52%), Gaps = 60/1138 (5%)
Query: 1127 EKKAIQSHQEEIELINIGTEENK-REIKIGATLEEGVKQKIIQL-------LREYPDIFA 1178
+ + + S +E+I L E + KI + E K K I L DIFA
Sbjct: 921 QTREMASAREDIRLAAATASEGEVPATKISKSGESEAKTKKIPLDPSDSTKTANNKDIFA 980
Query: 1179 WSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEY 1238
W DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +
Sbjct: 981 WKPSDMPGIPREVIEHSLYVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLH 1040
Query: 1239 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 1298
P+W+AN V V KK G+ RMCVD+ DLN + PKD F LP ID +VD+TA ++ SF+D +
Sbjct: 1041 PDWLANPVLVRKKTGQWRMCVDYTDLNISCPKDPFGLPRIDQVVDSTAGCELLSFLDCYL 1100
Query: 1299 GYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYV 1358
GY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE YV
Sbjct: 1101 GYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYV 1160
Query: 1359 DDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1418
DD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+
Sbjct: 1161 DDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPE 1220
Query: 1419 KVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEA 1478
K+ AI M P T+K V+ G + +SRF+S + P FKLL+K W + Q+A
Sbjct: 1221 KITAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPDAQKA 1280
Query: 1479 FDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSK 1534
F+ K L EPP+L P PL++Y+A + + VL +++E G K + IY++S+
Sbjct: 1281 FEDFKKLLTEPPVLASPHPQEPLLLYIAAASQVVSTVLVVEREEEGHVQKVQRPIYFVSE 1340
Query: 1535 KFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARW 1594
D +TRY ++K + ++L HY +H+ +++ + I G+IA+W
Sbjct: 1341 VLADSKTRYPQVQKLLYGILITTRKLSHYFQSHSVTVVTSFS-LGDILHNREANGRIAKW 1399
Query: 1595 QMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIN 1654
+ L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1400 ALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH------------ 1442
Query: 1655 EGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 1714
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+
Sbjct: 1443 --------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGL 1494
Query: 1715 EEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRD 1774
AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H+ R
Sbjct: 1495 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1554
Query: 1775 ENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDC--KPWY 1832
N+ AD LA S V + + V+ L P+ D AG + V W
Sbjct: 1555 NNEAADRLANFGSKREVAPSD----VFVEHLYTPT--VPHKDTTQIAGTHDVALVEADWR 1608
Query: 1833 YDIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDVLYKRNYDMVLLRCVDEHEAEQLM 1892
+ +FL S+E P K + + + R + +++ LYK++ +L RCV E QL+
Sbjct: 1609 EPLIRFLTSQELP--QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLL 1666
Query: 1893 HDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALN 1952
D+H G G HA T+ K R G++W D + R C CQ +A +IH+P L
Sbjct: 1667 KDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQ 1726
Query: 1953 VISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKN 2012
I WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F
Sbjct: 1727 TIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-I 1784
Query: 2013 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI--- 2069
NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE AN I
Sbjct: 1785 NIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQG 1844
Query: 2070 --KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLR 2127
R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1845 IKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLR 1904
Query: 2128 VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGELV 2187
E + + R D L+ +EE R A+ + Y ++ ++ V R F VG+LV
Sbjct: 1905 F---RNYREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLV 1961
Query: 2188 LKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2245
L++ Q R K +P +EGP+++ G+ L DG + N N + +++++A
Sbjct: 1962 LRK--IQTTRDRHKLSPLWEGPFIISDVTRPGSYRLKREDGTLVDNSWNIEHLRRFYA 2017
Score = 47.8 bits (112), Expect = 0.004
Identities = 33/104 (31%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 840 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTF-LVKAFDGSRKNVLGEIDLPITIGP 898
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 899 -ENFL---VTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 938
ENF ++F+V D +Y +LGRP + AV + +K
Sbjct: 849 RENFRTENISFEVDDFETAYHAILGRPALAKFMAVPHYTYMMMK 892
Score = 46.6 bits (109), Expect = 0.010
Identities = 47/197 (23%), Positives = 85/197 (42%), Gaps = 13/197 (6%)
Query: 174 KVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYT 233
+VD P FK ++Y+G T P++ + Y + + M + +L + A W
Sbjct: 431 RVDWPAGFKPTGIEKYDGTTNPESWLTIYGLAIRAAGGDSKAMANYLPVALADSARSWLH 490
Query: 234 SLSKNDIHTFDELATAFKSHYGFNTRLRPNREF-LRSLSQKKEESFREYAQRWRGAAARI 292
L + I ++ EL F +++ T P ++ L ++ QK ES R+Y +R+ +I
Sbjct: 491 GLPRGTIGSWAELRDHFIANFQ-GTFEHPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKI 549
Query: 293 TPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 352
+ D + + F K ++ + + P T+ E+A + KAE +
Sbjct: 550 SDITD-DVIIAAFTKGIRHEELVGKFGRKPPK-----TVKLMFEKANE-----YAKAEDA 598
Query: 353 VNASKRYGNGHHKKKET 369
V ASK+ G K T
Sbjct: 599 VTASKQSGPSWKPNKGT 615
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,927,619,584
Number of Sequences: 2540612
Number of extensions: 176608415
Number of successful extensions: 643123
Number of sequences better than 10.0: 35673
Number of HSP's better than 10.0 without gapping: 4778
Number of HSP's successfully gapped in prelim test: 30969
Number of HSP's that attempted gapping in prelim test: 610364
Number of HSP's gapped (non-prelim): 49961
length of query: 2245
length of database: 863,360,394
effective HSP length: 144
effective length of query: 2101
effective length of database: 497,512,266
effective search space: 1045273270866
effective search space used: 1045273270866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 84 (37.0 bits)
Medicago: description of AC147483.10