BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147435.10 + phase: 0 /pseudo
(612 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg... 135 4e-30
emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultiva... 106 2e-21
gb|AAX92750.1| retrotransposon protein, putative, unclassified [... 103 1e-20
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 102 4e-20
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 100 1e-19
emb|CAI44611.1| P0650D04.15 [Oryza sativa (japonica cultivar-gro... 100 2e-19
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 99 3e-19
gb|AAP53623.1| putative non-LTR retroelement reverse transcripta... 99 4e-19
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 98 7e-19
pir||H86435 protein F17F8.5 [imported] - Arabidopsis thaliana gi... 96 3e-18
emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultiva... 95 8e-18
gb|AAP54694.1| putative reverse transcriptase [Oryza sativa (jap... 94 1e-17
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta... 94 2e-17
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 92 6e-17
gb|AAX96121.1| retrotransposon protein, putative, unclassified [... 92 6e-17
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 91 8e-17
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 91 1e-16
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 91 1e-16
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 91 1e-16
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 90 2e-16
>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
gi|7484649|pir||T14619 reverse transcriptase - beet
retrotransposon (fragment)
Length = 507
Score = 135 bits (340), Expect = 4e-30
Identities = 64/154 (41%), Positives = 100/154 (64%)
Query: 1 DGVNFNRLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVR 60
+G+NFN+LSE + L+APF EEI+ V D K+PG D +NF F+K W ++K ++
Sbjct: 279 NGLNFNKLSESECSSLIAPFTHEEIDEAVDSCDAQKAPGPDGFNFKFIKSSWEVIKKDIY 338
Query: 61 IMFDQIHANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGV 120
+ + A+ LP + F+ALIPK P ++R IS++G LYK++AK+LARRL V
Sbjct: 339 KIVEDFWASGSLPHGCNSAFIALIPKTQHPRGFNEFRPISMVGCLYKIIAKILARRLQRV 398
Query: 121 LSSVISTTQSAFLKGTNLVDGVLVVNELVDYAKK 154
+ +I QS+F+KG ++DGVL+ +EL+D ++
Sbjct: 399 MDHLIGPYQSSFIKGRQILDGVLIASELIDSCRR 432
>emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultivar-group)]
Length = 779
Score = 106 bits (265), Expect = 2e-21
Identities = 57/149 (38%), Positives = 85/149 (56%)
Query: 7 RLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQI 66
R+ + DND LV PF MEEIE + E N +PG D F KEFW +K++++ M D +
Sbjct: 141 RVDQEDNDFLVRPFSMEEIERALAEMKTNTAPGPDGLPVCFYKEFWEQLKDQIKEMLDSL 200
Query: 67 HANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIS 126
L + + LIPK+ +K +R I LL +KLL KVL R+ V + VI
Sbjct: 201 FEGRLDLWRLNYGVITLIPKIKEANNIKAFRPICLLNVCFKLLTKVLTMRITHVANKVIG 260
Query: 127 TTQSAFLKGTNLVDGVLVVNELVDYAKKS 155
+Q+AFL G ++DGV++++E++ K S
Sbjct: 261 ESQTAFLPGRFILDGVVILHEVLHELKNS 289
>gb|AAX92750.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1319
Score = 103 bits (258), Expect = 1e-20
Identities = 46/143 (32%), Positives = 88/143 (61%)
Query: 7 RLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQI 66
++S+ +ND L APF EE++ + + NK+PG D + F ++FW ++K+++ +F++
Sbjct: 890 QVSQAENDFLTAPFSEEEVKEAIFAMEHNKAPGLDGFPAEFYQKFWDVIKHDLMNLFNEF 949
Query: 67 HANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIS 126
H L + + L+PKV +++ YR I LL YK+ KV R++ V + +++
Sbjct: 950 HTGSLPIFGLNFGVLTLVPKVKEANQIQQYRPICLLNVSYKIFTKVATNRISSVANHLVN 1009
Query: 127 TTQSAFLKGTNLVDGVLVVNELV 149
TQ+ F++G N++DGV++++E V
Sbjct: 1010 PTQTVFMRGRNILDGVVIIHETV 1032
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412166|pir||H84629 hypothetical protein
At2g23880 [imported] - Arabidopsis thaliana
Length = 1216
Score = 102 bits (254), Expect = 4e-20
Identities = 63/150 (42%), Positives = 82/150 (54%), Gaps = 1/150 (0%)
Query: 7 RLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQI 66
R SE D+ LL EEI+ V+ +KSPG D Y F K W ++ +EV I
Sbjct: 161 RCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSF 220
Query: 67 HANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIS 126
A LPK + + +ALIPK E+KDYR IS LYK ++K+LA RL +L I
Sbjct: 221 FAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIV 280
Query: 127 TTQSAFLKGTNLVDGVLVVNELV-DYAKKS 155
QSAF+K L++ VL+ ELV DY K S
Sbjct: 281 GNQSAFVKDRLLIENVLLATELVKDYHKDS 310
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 100 bits (249), Expect = 1e-19
Identities = 57/148 (38%), Positives = 81/148 (54%), Gaps = 1/148 (0%)
Query: 7 RLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQI 66
R S+ D L+ P EEI V+ +KSPG D Y F K W ++ +E +
Sbjct: 440 RCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSF 499
Query: 67 HANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIS 126
LPK + + +ALIPK + E+KDYR IS LYK+++K++A RL VL I+
Sbjct: 500 FTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIA 559
Query: 127 TTQSAFLKGTNLVDGVLVVNELV-DYAK 153
QSAF+K L++ +L+ ELV DY K
Sbjct: 560 GNQSAFVKDRLLIENLLLATELVKDYHK 587
>emb|CAI44611.1| P0650D04.15 [Oryza sativa (japonica cultivar-group)]
Length = 1579
Score = 99.8 bits (247), Expect = 2e-19
Identities = 46/142 (32%), Positives = 89/142 (62%)
Query: 8 LSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQIH 67
L D ++L+ PF +EE++ V++E+ N +PG D ++ F + FW ++N++ M +H
Sbjct: 825 LKPKDREVLIRPFKLEELDKVLKEAKLNTAPGPDGFSIPFYRAFWPHLQNDIFEMLLMLH 884
Query: 68 ANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIST 127
EL K + ++LIPK + P ++K +R I +L +K ++KV+ R + V + VIS
Sbjct: 885 NEELDLKRLNFGVISLIPKNNDPSDIKQFRPICVLNDCFKFISKVVTNRFSEVANGVISP 944
Query: 128 TQSAFLKGTNLVDGVLVVNELV 149
TQ+AF+ G +++G ++++E++
Sbjct: 945 TQTAFIPGRFILEGCVIIHEVL 966
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488323|pir||T02730 RNA-directed DNA
polymerase homolog T9I4.6 - Arabidopsis thaliana
Length = 1529
Score = 99.4 bits (246), Expect = 3e-19
Identities = 61/150 (40%), Positives = 80/150 (52%), Gaps = 1/150 (0%)
Query: 7 RLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQI 66
R S D ++L EEI+ V+ NKSPG D Y F K W L +
Sbjct: 737 RCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSF 796
Query: 67 HANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIS 126
LPK + A +ALIPK +E+KDYR IS LYK+++K+LA RL +L S I
Sbjct: 797 FVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFIL 856
Query: 127 TTQSAFLKGTNLVDGVLVVNELV-DYAKKS 155
QSAF+K L++ VL+ ELV DY K+S
Sbjct: 857 QNQSAFVKERLLMENVLLATELVKDYHKES 886
>gb|AAP53623.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534068|ref|NP_921336.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|19881727|gb|AAM01128.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1228
Score = 99.0 bits (245), Expect = 4e-19
Identities = 49/150 (32%), Positives = 88/150 (58%)
Query: 4 NFNRLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMF 63
N LS+ + L PF M E++ V+ E+ N +PG D ++ F + FW +KN++ M
Sbjct: 940 NHLNLSDASKENLTRPFVMAELDKVINEAKLNTAPGPDGFSIPFYRAFWPQVKNDLFEML 999
Query: 64 DQIHANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSS 123
+H +L K + ++LIPK ++P ++K +R I +L +K L+KV+ RL V
Sbjct: 1000 LMLHNEDLDLKRLNFGVISLIPKNNNPTDIKQFRPICVLNDCFKFLSKVVTNRLTEVADE 1059
Query: 124 VISTTQSAFLKGTNLVDGVLVVNELVDYAK 153
V+S TQ+AF+ G +++G ++++E++ K
Sbjct: 1060 VVSQTQTAFIPGRFILEGCVIIHEVLHELK 1089
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana] gi|7488318|pir||T01191
RNA-directed DNA polymerase homolog F21E10.5 -
Arabidopsis thaliana
Length = 928
Score = 98.2 bits (243), Expect = 7e-19
Identities = 59/150 (39%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Query: 7 RLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQI 66
R S+ D ++L EEI VV +KSPG D Y F K W ++ E +
Sbjct: 328 RCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSF 387
Query: 67 HANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIS 126
A LPK + + +ALIPK E+KDYR IS LYK+++K++A RL VL I
Sbjct: 388 FAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIV 447
Query: 127 TTQSAFLKGTNLVDGVLVVNELV-DYAKKS 155
QSAF+K L++ VL+ E+V DY K S
Sbjct: 448 GNQSAFVKDRLLIENVLLATEIVKDYHKDS 477
>pir||H86435 protein F17F8.5 [imported] - Arabidopsis thaliana
gi|9755374|gb|AAF98181.1| F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 95.9 bits (237), Expect = 3e-18
Identities = 55/150 (36%), Positives = 82/150 (54%), Gaps = 1/150 (0%)
Query: 7 RLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQI 66
R + DN++L EEI+ V+ +KSPG D Y F K W ++ E +
Sbjct: 87 RCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSF 146
Query: 67 HANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIS 126
LPK + + +ALIPK + E++DYR IS LYK+++K++A RL +L I+
Sbjct: 147 FQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIA 206
Query: 127 TTQSAFLKGTNLVDGVLVVNELV-DYAKKS 155
QSAF+K L++ +L+ ELV DY K S
Sbjct: 207 ENQSAFVKDRLLIENLLLATELVKDYHKDS 236
>emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)]
gi|50930119|ref|XP_474587.1| OSJNBa0019G23.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1140
Score = 94.7 bits (234), Expect = 8e-18
Identities = 43/129 (33%), Positives = 78/129 (60%)
Query: 21 HMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQIHANELLPKSMLAYF 80
H+ EI+ + D NK+PG D + F ++FW ++K+++ +F++ H+ L +
Sbjct: 665 HLREIKEAIFAMDHNKAPGPDGFPVEFYQKFWEVIKHDLLNLFNEFHSGSLPIFGLNFGV 724
Query: 81 VALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVISTTQSAFLKGTNLVD 140
+ LIPKV ++ YR I LL YK+ KV R++ V ++++ TQ+AF++G N++D
Sbjct: 725 ITLIPKVEEANRIQQYRPICLLNVSYKIFTKVATNRISSVADNLVNPTQTAFMRGRNILD 784
Query: 141 GVLVVNELV 149
GV +++E V
Sbjct: 785 GVAIIHETV 793
>gb|AAP54694.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536210|ref|NP_922407.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311270|gb|AAO00696.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 563
Score = 94.0 bits (232), Expect = 1e-17
Identities = 47/144 (32%), Positives = 88/144 (60%), Gaps = 2/144 (1%)
Query: 7 RLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQI 66
++S+++N+ L F +EI+ + + + NK+PG D + F + FW ++K+++ +F +
Sbjct: 188 QVSQLENEALTQEFTEDEIKKAIFQMEHNKAPGPDGFPAEFYQVFWNVIKSDLLDLFIEF 247
Query: 67 HANELLPKSMLAYF-VALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVI 125
H N LP L + + L+PK ++++ YR I LL +K+ KV R+ GV VI
Sbjct: 248 H-NGTLPLFSLNFGPIILLPKCMEAMKIQQYRPICLLNVSFKIFTKVATNRIIGVAQKVI 306
Query: 126 STTQSAFLKGTNLVDGVLVVNELV 149
S TQ+AF+ G N+++GV++++E +
Sbjct: 307 SPTQTAFIPGRNIMEGVVILHETI 330
>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7487278|pir||T00530 hypothetical protein
At2g19100 [imported] - Arabidopsis thaliana
Length = 1447
Score = 93.6 bits (231), Expect = 2e-17
Identities = 51/146 (34%), Positives = 78/146 (52%)
Query: 7 RLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQI 66
R SE +++LL EEI+ V+ +KSPG D + F K W ++ NE +
Sbjct: 848 RCSETEHELLTRVVTAEEIKKVLFSMPNDKSPGPDGFTSEFFKATWEILGNEFILAIQSF 907
Query: 67 HANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIS 126
A LPK + +ALIPK E+KDYR IS +YK+++K++A RL V I+
Sbjct: 908 FAKGFLPKGINTTILALIPKKKEAKEMKDYRPISCCNVIYKVISKIIANRLKLVPPKFIA 967
Query: 127 TTQSAFLKGTNLVDGVLVVNELVDYA 152
QSAF+K L++ VL+ + ++
Sbjct: 968 GNQSAFVKDRLLIENVLLATDTASFS 993
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|7488317|pir||T01610 RNA-directed DNA polymerase
homolog At2g18820 - Arabidopsis thaliana
Length = 1412
Score = 91.7 bits (226), Expect = 6e-17
Identities = 58/153 (37%), Positives = 82/153 (52%), Gaps = 1/153 (0%)
Query: 2 GVNFNRLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRI 61
G+ R S + +LLVA E+ V NKSPG D Y F +E W ++ EV +
Sbjct: 701 GILQYRYSLHEQNLLVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTM 760
Query: 62 MFDQIHANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVL 121
LPK + + +ALIPK + E+KDYR IS LYK ++K+LA RL +L
Sbjct: 761 AIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLL 820
Query: 122 SSVISTTQSAFLKGTNLVDGVLVVNELV-DYAK 153
I+ QSAF+ L++ +L+ +ELV DY K
Sbjct: 821 PEFIAPNQSAFISDRLLMENLLLASELVKDYHK 853
>gb|AAX96121.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1556
Score = 91.7 bits (226), Expect = 6e-17
Identities = 49/151 (32%), Positives = 85/151 (55%), Gaps = 2/151 (1%)
Query: 7 RLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQI 66
++S +N L F EE++ V + + NK+PG D + F + FW ++K ++ +F
Sbjct: 1152 QVSMEENTFLTKEFTEEEVKHAVFQMEHNKAPGPDGFPAEFYQVFWEVIKEDLMAVFRDF 1211
Query: 67 HANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIS 126
H+ EL + + L+PK +++ YR I LL +K+ KV+A R+A V VI
Sbjct: 1212 HSGELPLHRLNFGIITLLPKNKEAKQIQQYRRICLLNVSFKVFTKVMANRIALVAQKVIR 1271
Query: 127 TTQSAFLKGTNLVDGVLVVNELVD--YAKKS 155
+Q AFLKG N+++G ++++E + + KKS
Sbjct: 1272 PSQIAFLKGRNIIEGAIILHETLHEMHKKKS 1302
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 91.3 bits (225), Expect = 8e-17
Identities = 46/149 (30%), Positives = 87/149 (57%)
Query: 7 RLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQI 66
RLS+ + + L+ PF EE++ +++ + +PG D + +F + FW ++++ + M D +
Sbjct: 141 RLSQEEREHLIRPFTFEEMDQALKQMKTDTAPGPDGFTVSFYRAFWPQLRDQFKEMLDLL 200
Query: 67 HANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIS 126
L + ++LIPKV +K +R I LL +KL+ K+L RL V +VI
Sbjct: 201 FEGRLDLWRINYGVISLIPKVKDANTIKAFRPICLLNVCFKLITKILTNRLTLVAHNVIG 260
Query: 127 TTQSAFLKGTNLVDGVLVVNELVDYAKKS 155
+Q+AF+ G ++DGV++++E++ KK+
Sbjct: 261 ESQTAFIPGRFILDGVIILHEVLHEVKKT 289
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410913|pir||B84426 hypothetical protein
At2g01550 [imported] - Arabidopsis thaliana
Length = 1449
Score = 90.9 bits (224), Expect = 1e-16
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Query: 9 SEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQIHA 68
S + D+L A +EI + +KSPG D Y F K W ++ E +
Sbjct: 857 SPAEKDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFE 916
Query: 69 NELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVISTT 128
LPK + +ALIPK E+KDYR IS +YK+++K++A RL VL + I+
Sbjct: 917 KGFLPKGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGN 976
Query: 129 QSAFLKGTNLVDGVLVVNELV-DYAK 153
QSAF+K L++ +L+ ELV DY K
Sbjct: 977 QSAFVKDRLLIENLLLATELVKDYHK 1002
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 90.5 bits (223), Expect = 1e-16
Identities = 51/147 (34%), Positives = 79/147 (53%)
Query: 7 RLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQI 66
R+SEV N+ LV +EI+ V +PG D + F + +W + N+V +
Sbjct: 381 RVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKF 440
Query: 67 HANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIS 126
A+ ++P + LIPK P E+ D R ISL LYK+++K++A+RL L ++S
Sbjct: 441 FADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVS 500
Query: 127 TTQSAFLKGTNLVDGVLVVNELVDYAK 153
TQSAF+ + D +LV +ELV K
Sbjct: 501 DTQSAFVSERLITDNILVAHELVHSLK 527
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 90.5 bits (223), Expect = 1e-16
Identities = 51/147 (34%), Positives = 79/147 (53%)
Query: 7 RLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQI 66
R+SEV N+ LV +EI+ V +PG D + F + +W + N+V +
Sbjct: 378 RVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKF 437
Query: 67 HANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIS 126
A+ ++P + LIPK P E+ D R ISL LYK+++K++A+RL L ++S
Sbjct: 438 FADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVS 497
Query: 127 TTQSAFLKGTNLVDGVLVVNELVDYAK 153
TQSAF+ + D +LV +ELV K
Sbjct: 498 DTQSAFVSERLITDNILVAHELVHSLK 524
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 90.1 bits (222), Expect = 2e-16
Identities = 45/142 (31%), Positives = 85/142 (59%)
Query: 8 LSEVDNDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQIH 67
L E D + L+ PF +EE+ V+RE+ N + G D ++ F + FW ++ ++ M ++
Sbjct: 1046 LKEEDKNTLMRPFTIEELYKVLREAKPNTAFGPDGFSIPFYRAFWPQLRPDLFEMLLMLY 1105
Query: 68 ANELLPKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIST 127
EL K + ++LIPK S+P ++K +R I +L +K ++K + RL + VIS
Sbjct: 1106 NEELDLKRLNFGVISLIPKNSNPTDIKQFRPICVLNDCFKFISKCVCNRLTEIARDVISP 1165
Query: 128 TQSAFLKGTNLVDGVLVVNELV 149
TQ+AF+ G +++G ++++E++
Sbjct: 1166 TQTAFIPGRFILEGCVIIHEVL 1187
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.358 0.165 0.605
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 886,978,110
Number of Sequences: 2540612
Number of extensions: 33387694
Number of successful extensions: 150763
Number of sequences better than 10.0: 592
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 149764
Number of HSP's gapped (non-prelim): 732
length of query: 612
length of database: 863,360,394
effective HSP length: 134
effective length of query: 478
effective length of database: 522,918,386
effective search space: 249954988508
effective search space used: 249954988508
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 78 (34.7 bits)
Medicago: description of AC147435.10