BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147202.9 + phase: 0 /pseudo
(520 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 187 9e-46
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 181 6e-44
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 179 2e-43
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 179 2e-43
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 179 2e-43
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 178 4e-43
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 177 7e-43
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 177 9e-43
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 176 1e-42
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 176 2e-42
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 174 6e-42
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 171 7e-41
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 171 7e-41
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 170 9e-41
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 170 1e-40
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 169 1e-40
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 169 1e-40
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 169 1e-40
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 168 4e-40
ref|XP_474837.1| OSJNBa0052O21.12 [Oryza sativa (japonica cultiv... 168 4e-40
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 187 bits (474), Expect = 9e-46
Identities = 90/185 (48%), Positives = 117/185 (62%)
Query: 4 KVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPGSGL 63
K+DMSKAYDR+ W +L +ML+LGF W IM CV +V Y++ VN E P GL
Sbjct: 775 KLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGL 834
Query: 64 RKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCRAT* 123
R+GDPLSPYLF+LCA+G ++L+ K E G LHG+R+C GAP+ +HLLF DD + CRA
Sbjct: 835 RQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANG 894
Query: 124 REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKYLGL 183
E L+ IL IYE+ SGQ IN KS + FS N + K ++ L + KYLGL
Sbjct: 895 GEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGL 954
Query: 184 PSVIG 188
P +G
Sbjct: 955 PVFVG 959
Score = 75.5 bits (184), Expect = 4e-12
Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
L+A+Y+ F + +N+SY W+SI + + +++ G W++G+G KI ++ D W+ G
Sbjct: 1086 LRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGW 1145
Query: 365 LAQPAA*YNRLLQLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDERVW 424
+P L V+EL+ P +W+ D+L + V A+ ++ + D W
Sbjct: 1146 SRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDV-AAIKSIPVHVEMEDVLAW 1204
Query: 425 RPGKRGIYTVRSA 437
RG +TV+SA
Sbjct: 1205 HFDARGCFTVKSA 1217
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 181 bits (458), Expect = 6e-44
Identities = 89/207 (42%), Positives = 127/207 (60%), Gaps = 6/207 (2%)
Query: 3 LKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPGSG 62
+K+DMSKAYDR+ W++LR +MLRLGF +W +M CV SV Y++ +N E I P G
Sbjct: 921 IKLDMSKAYDRVEWDFLRHMMLRLGFHDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRG 980
Query: 63 LRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCRAT 122
LR+GDPLSPYLFI+CA+GL++L+ KA+ G + G++VC P HL F DD + RA
Sbjct: 981 LRQGDPLSPYLFIICAEGLSALLQKAQADGKIEGIKVCRDTPRINHLFFADDSLVLMRAG 1040
Query: 123 *REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKYLG 182
+ L+ +L+IYE ASGQ IN KS + FS N ++ + + L +N +YLG
Sbjct: 1041 QNDAQELRRVLNIYEVASGQVINKDKSSVLFSPNTLQSDRMEVRSALCINQEAKNERYLG 1100
Query: 183 LPSVIGTEYGGRSTLGEGALYLRREKW 209
LP IG + + Y++R+ W
Sbjct: 1101 LPVSIG------KSRRKAFEYIKRKVW 1121
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 179 bits (453), Expect = 2e-43
Identities = 91/188 (48%), Positives = 113/188 (59%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K D+SKAYDR+ W++L M GF KW GWIM V+SV Y VL+N G I P
Sbjct: 953 MAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPT 1012
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R+GDPLSPYLFILC L+ LI+ GDL GVR+ GAP THL F DD FC+
Sbjct: 1013 RGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQ 1072
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A R ALK++ +YE SGQ+IN QKS I F V + + IL++ GKY
Sbjct: 1073 ANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKY 1132
Query: 181 LGLPSVIG 188
LGLP G
Sbjct: 1133 LGLPEQFG 1140
Score = 51.6 bits (122), Expect = 6e-05
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
+KARY++ +I +A SY W S+ + I ++K+GTR IG+G IR+ D +V+
Sbjct: 1267 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDN-IVDSH 1325
Query: 365 LAQPAA*YNRLLQLNVKELLQ--PGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDER 422
+P ++ + L + W+ + ++ L S D+
Sbjct: 1326 PPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKI 1385
Query: 423 VWRPGKRGIYTVRS 436
+W G YTVRS
Sbjct: 1386 IWNYNTTGEYTVRS 1399
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 179 bits (453), Expect = 2e-43
Identities = 91/188 (48%), Positives = 113/188 (59%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K D+SKAYDR+ W++L M GF KW GWIM V+SV Y VL+N G I P
Sbjct: 727 MAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPT 786
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R+GDPLSPYLFILC L+ LI+ GDL GVR+ GAP THL F DD FC+
Sbjct: 787 RGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQ 846
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A R ALK++ +YE SGQ+IN QKS I F V + + IL++ GKY
Sbjct: 847 ANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKY 906
Query: 181 LGLPSVIG 188
LGLP G
Sbjct: 907 LGLPEQFG 914
Score = 51.6 bits (122), Expect = 6e-05
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
+KARY++ +I +A SY W S+ + I ++K+GTR IG+G IR+ D +V+
Sbjct: 1041 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDN-IVDSH 1099
Query: 365 LAQPAA*YNRLLQLNVKELLQ--PGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDER 422
+P ++ + L + W+ + ++ L S D+
Sbjct: 1100 PPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKI 1159
Query: 423 VWRPGKRGIYTVRS 436
+W G YTVRS
Sbjct: 1160 IWNYNTTGEYTVRS 1173
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 179 bits (453), Expect = 2e-43
Identities = 90/188 (47%), Positives = 115/188 (60%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K DMSKAYDRI W +L+ V++RLGF KW W+M CV +V Y L+N +G ++P
Sbjct: 512 MAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPS 571
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSPYLFILC + L+ L KA+ +G + G+RV G+P HLLF DD FC+
Sbjct: 572 RGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCK 631
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
AL NIL YE ASGQ IN KS I FS K + L+++ GKY
Sbjct: 632 TNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKY 691
Query: 181 LGLPSVIG 188
LGLP G
Sbjct: 692 LGLPEHFG 699
Score = 50.8 bits (120), Expect = 1e-04
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 325 SYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGGLAQPAA*YNRL-LQLNVKEL 383
S+ W+ I ++++G W IG GD I V+ + WL P L+V +L
Sbjct: 840 SHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDL 899
Query: 384 LQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNS-TAYDERVWRPGKRGIYTVRS 436
+ KSWN++ ++ +L + + + N+ D VW P K G YT ++
Sbjct: 900 ICHDVKSWNVEAIRKHLPQYE--DQIRKITINALPLQDSLVWLPVKSGEYTTKT 951
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 178 bits (451), Expect = 4e-43
Identities = 86/186 (46%), Positives = 116/186 (62%)
Query: 3 LKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPGSG 62
LK+DM KAYDR+ W YL + +LGF W +M CV SV+Y V +N E P++P G
Sbjct: 588 LKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRG 647
Query: 63 LRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCRAT 122
+R+GDP+SPYLF+LC +GL+ L+ K E G+L G++ P +HLLF DD F +A
Sbjct: 648 IRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKAD 707
Query: 123 *REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKYLG 182
R V ALKN L Y ASGQ+IN KS IFF K K+++ + LQV+ + YLG
Sbjct: 708 SRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLG 767
Query: 183 LPSVIG 188
+P+ IG
Sbjct: 768 MPTEIG 773
Score = 57.4 bits (137), Expect = 1e-06
Identities = 34/145 (23%), Positives = 62/145 (42%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
LK RY+ ++ +EA + + S+ W+S+ ++ +G RW +G+G I++F D W+
Sbjct: 900 LKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFR 959
Query: 365 LAQPAA*YNRLLQLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDERVW 424
V L+ + W+ D+++ E + + D W
Sbjct: 960 PQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQIPISRHGDADFASW 1019
Query: 425 RPGKRGIYTVRSASRFCLTELVEGD 449
K G+Y+VRSA +E D
Sbjct: 1020 PHDKLGLYSVRSAYNLARSEAFFAD 1044
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 177 bits (449), Expect = 7e-43
Identities = 82/186 (44%), Positives = 119/186 (63%)
Query: 3 LKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPGSG 62
+K D+SKAYDR+ W +L +VM++LGF +W WIM CV SV Y+VL+N G I P G
Sbjct: 935 VKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRG 994
Query: 63 LRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCRAT 122
+R+GDPLSPYLF+ CA+ L++++ KAE +HG+++ +HLLF DD FCRA+
Sbjct: 995 IRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRAS 1054
Query: 123 *REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKYLG 182
+ + L I YE+ASGQ+IN+ KS I F + + + + +L ++ GKYLG
Sbjct: 1055 NQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLG 1114
Query: 183 LPSVIG 188
LP +G
Sbjct: 1115 LPEQLG 1120
Score = 61.6 bits (148), Expect = 6e-08
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 306 KARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGGL 365
K YY ANKG + SY W SI E +++QG R ++G+G ++++D WL
Sbjct: 1230 KGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLPT--- 1286
Query: 366 AQPAA*YNRLL--QLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDERV 423
P +L + V +L + ++ W+ + + L+ + A + L N A D
Sbjct: 1287 LPPRPARGPILDEDMKVADLWRENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYK 1346
Query: 424 WRPGKRGIYTVRS 436
W + YTVRS
Sbjct: 1347 WAYTRNTQYTVRS 1359
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 177 bits (448), Expect = 9e-43
Identities = 91/207 (43%), Positives = 125/207 (59%), Gaps = 6/207 (2%)
Query: 3 LKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPGSG 62
+K MSKAYDR+ W +L ++ML+LGFD W +M CV SV Y++ VN E I P G
Sbjct: 1030 VKQGMSKAYDRVEWGFLEKMMLKLGFDRNWVFIVMKCVTSVTYRIKVNGEFTEQINPTGG 1089
Query: 63 LRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCRAT 122
LR+GDP+SPYLF +CA+G ++L++ AE RGDL ++VC AP+ HLLF DD L +
Sbjct: 1090 LRQGDPISPYLFFICAEGFSTLLNAAEERGDLSVIKVCQNAPSINHLLFADDSLLLLKTD 1149
Query: 123 *REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKYLG 182
L+N+LS+YE SG+ IN +KS I FS+N+ K + L + + KYLG
Sbjct: 1150 EGSAACLQNVLSLYERCSGETINKEKSSIMFSRNIKEVNKQIFMGALDIGVGAWNEKYLG 1209
Query: 183 LPSVIGTEYGGRSTLGEGALYLRREKW 209
LP Y GRS + + YL+ W
Sbjct: 1210 LP-----VYMGRSK-AKTSSYLKERVW 1230
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 176 bits (447), Expect = 1e-42
Identities = 86/188 (45%), Positives = 119/188 (62%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K DMSKAYD++ W ++ ++ ++GF KW WIM C+ +V+YKVL+N + +G I+P
Sbjct: 355 MAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPE 414
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSPYLFILC + L + I KAE + + G++V T +P +HLLF DD FC+
Sbjct: 415 RGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCK 474
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A + + IL YE SGQQINF KS I F V K +I IL ++ G Y
Sbjct: 475 ANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSY 534
Query: 181 LGLPSVIG 188
LGLP +G
Sbjct: 535 LGLPESLG 542
Score = 60.5 bits (145), Expect = 1e-07
Identities = 41/145 (28%), Positives = 67/145 (45%), Gaps = 3/145 (2%)
Query: 306 KARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGGL 365
K RY+R++ ++ K + SY W+S+ A +V +G ++G+G I V+ D W +
Sbjct: 670 KGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPW-IPAQF 728
Query: 366 AQPAA*YNRLL--QLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDERV 423
+PA ++ L VK L+ WN+D+L+ + V + N D
Sbjct: 729 PRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLG 788
Query: 424 WRPGKRGIYTVRSASRFCLTELVEG 448
W K G YTV+S +L EG
Sbjct: 789 WHFTKAGNYTVKSGYHTARLDLNEG 813
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 176 bits (445), Expect = 2e-42
Identities = 89/188 (47%), Positives = 111/188 (58%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K D+SKAYDR+ W++L M GF KW GWIM V+SV Y VL+N G I P
Sbjct: 192 MAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPT 251
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R+GDPLSPYLFILC L+ LI GD+ GVR+ GAP THL F DD FC+
Sbjct: 252 RGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQ 311
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A R ALK++ +YE SGQ+IN QKS I F V + + +L + GKY
Sbjct: 312 ANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKY 371
Query: 181 LGLPSVIG 188
LGLP G
Sbjct: 372 LGLPEQFG 379
Score = 55.8 bits (133), Expect = 3e-06
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
+KARY++ N+I +A + SY W S+ I ++++GTR+ IG+G IR+ D +V+
Sbjct: 506 MKARYFKDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDN-VVDSH 564
Query: 365 LAQPAA*YNRLLQLNVKELLQ--PGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDER 422
+P + L++ L Q + W+ LQ ++ L + D
Sbjct: 565 PPRPLLTDEQHNGLSLDNLFQHRGHSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRL 624
Query: 423 VWRPGKRGIYTVRS 436
+W G YTVRS
Sbjct: 625 IWSYNSTGDYTVRS 638
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 174 bits (441), Expect = 6e-42
Identities = 84/188 (44%), Positives = 117/188 (61%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K DMSKAYDR+ W ++ ++ ++GF KW WIM C+ +V+Y+VL+N + G I+P
Sbjct: 421 MAIKTDMSKAYDRVEWNFIEELLKKMGFCEKWISWIMWCITTVQYRVLLNGQPRGLIVPK 480
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSPYLFILC + L + I KAE + G++V T +P+ +HLLF +D FC+
Sbjct: 481 RGLRQGDPLSPYLFILCTEVLIANIRKAEQEKLITGIKVATASPSVSHLLFANDSLFFCK 540
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A + + IL YE SGQ INF KS I F VG K I + L ++ G Y
Sbjct: 541 ANKEQCGVILGILKQYEAVSGQMINFSKSSIQFGHKVGDDIKAEIKSALGIHSIGGMGSY 600
Query: 181 LGLPSVIG 188
LGLP +G
Sbjct: 601 LGLPESLG 608
Score = 52.0 bits (123), Expect = 5e-05
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 306 KARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRW------ 359
K RY+R++ + K + SY W+SI A +VK+G ++G+G I V++D W
Sbjct: 736 KGRYFRKSNPLDKLKSYSPSYGWRSIISARSLVKKGLINRVGSGASISVWEDPWIPAQFP 795
Query: 360 ---LVNGGLAQPAA*YNRLLQLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNS 416
+ NG + P+ L V L+ WN+D L + V L +S
Sbjct: 796 RPAISNGSVIDPS--------LKVNNLIDSRSNFWNIDFLNEIFVPEDVLLISAMHLGSS 847
Query: 417 TAYDERVWRPGKRGIYTVR 435
T D + K I+ V+
Sbjct: 848 TKEDSLDIKTLKAHIWKVQ 866
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 171 bits (432), Expect = 7e-41
Identities = 86/184 (46%), Positives = 112/184 (60%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K DMSKAYDR+ W YLR ++L LGF KW WIM+CV SV Y VL+N G I+
Sbjct: 537 MAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQ 596
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSP+LF+LC +GLT L++KA+ G L G++ P HLLF DD C+
Sbjct: 597 RGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCK 656
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A+ + L+ IL +Y +A+GQ IN KS I F + V K I L + G Y
Sbjct: 657 ASREQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTY 716
Query: 181 LGLP 184
LGLP
Sbjct: 717 LGLP 720
Score = 50.1 bits (118), Expect = 2e-04
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
LK+RY+ +A S+ W+SI ++ +G + ++G+G + V+ D W+ + G
Sbjct: 851 LKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNG 910
Query: 365 LAQPAA*YNRL--LQLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDER 422
P N + + L VK LL P W+ +VL + + S A D
Sbjct: 911 FRAPWR-KNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDILRIKAIKPVISQA-DFF 968
Query: 423 VWRPGKRGIYTVRSA 437
VW+ K G ++V+SA
Sbjct: 969 VWKLNKSGDFSVKSA 983
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 171 bits (432), Expect = 7e-41
Identities = 86/184 (46%), Positives = 112/184 (60%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K DMSKAYDR+ W YLR ++L LGF KW WIM+CV SV Y VL+N G I+
Sbjct: 534 MAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQ 593
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSP+LF+LC +GLT L++KA+ G L G++ P HLLF DD C+
Sbjct: 594 RGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCK 653
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A+ + L+ IL +Y +A+GQ IN KS I F + V K I L + G Y
Sbjct: 654 ASREQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTY 713
Query: 181 LGLP 184
LGLP
Sbjct: 714 LGLP 717
Score = 50.1 bits (118), Expect = 2e-04
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
LK+RY+ +A S+ W+SI ++ +G + ++G+G + V+ D W+ + G
Sbjct: 848 LKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNG 907
Query: 365 LAQPAA*YNRL--LQLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDER 422
P N + + L VK LL P W+ +VL + + S A D
Sbjct: 908 FRAPWR-KNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDILRIKAIKPVISQA-DFF 965
Query: 423 VWRPGKRGIYTVRSA 437
VW+ K G ++V+SA
Sbjct: 966 VWKLNKSGDFSVKSA 980
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
Length = 1333
Score = 170 bits (431), Expect = 9e-41
Identities = 83/184 (45%), Positives = 114/184 (61%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K +MSKA+DR+ W Y+R ++ LGF KW GWIM + SV Y VL+N ++ G I+P
Sbjct: 573 IAIKSNMSKAFDRVEWNYVRALLDALGFHQKWVGWIMFMISSVSYSVLINDKAFGNIVPS 632
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSP+LF+LC++GLT L+++AE +G L G+R P HLLF DD C+
Sbjct: 633 RGLRQGDPLSPFLFVLCSEGLTHLMNRAERQGLLSGIRFSENGPAIHHLLFADDSLFMCK 692
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A EV +K+I +Y D +GQ+IN+ KS I V KV I L + Y
Sbjct: 693 AVKEEVTVIKSIFKVYGDVTGQRINYDKSSITLGALVDEDCKVWIQAELGITNEGGASTY 752
Query: 181 LGLP 184
LGLP
Sbjct: 753 LGLP 756
Score = 49.7 bits (117), Expect = 2e-04
Identities = 37/136 (27%), Positives = 60/136 (43%), Gaps = 6/136 (4%)
Query: 304 FLKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNG 363
F K+RYY +A SY W+SI ++ +G R K+GNG V+ D W+ +
Sbjct: 886 FFKSRYYDEEDFLDAELKATPSYAWRSILHGRDLLIKGFRKKVGNGSSTSVWMDPWIYDN 945
Query: 364 GLAQPAA*YNRL-LQLNVKELLQPGQKSWNLDVLQH--YLSSQSVFEAMNTLLFNSTAYD 420
P + + L L V +L+ + D L+ Y + + N ++ + D
Sbjct: 946 DPRLPLQKHFSVNLDLRVHDLINVEDRCRRRDRLEELFYPADIEIIVKRNPVV---SMDD 1002
Query: 421 ERVWRPGKRGIYTVRS 436
VW K G Y+V+S
Sbjct: 1003 FWVWLHSKSGEYSVKS 1018
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 170 bits (430), Expect = 1e-40
Identities = 85/188 (45%), Positives = 111/188 (58%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K DMSKAYDR+ W++L++V+ R GF + W W++ CV SV Y L+N +G ++P
Sbjct: 466 MAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPT 525
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSP LFILC + L+ L +A+ L GVRV P HLLF DD F +
Sbjct: 526 RGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSK 585
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
+ N L ILS Y ASGQ INF KS + FS K + IL++ TGKY
Sbjct: 586 SDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKY 645
Query: 181 LGLPSVIG 188
LGLP G
Sbjct: 646 LGLPEHFG 653
Score = 47.8 bits (112), Expect = 9e-04
Identities = 36/140 (25%), Positives = 61/140 (42%), Gaps = 16/140 (11%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
L +Y ++ E + S+ W+SI ++K+G W I NG+K+ ++ D WL
Sbjct: 780 LLGKYCHSSSFMECKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWL---S 836
Query: 365 LAQPAA*YNRLLQ----LNVKELLQPGQKSWNLD----VLQHYLSSQSVFEAMNTLLFNS 416
+++P L+ L V L+ W+ + +L +Y + A +S
Sbjct: 837 ISKPLVPIGPALREHQDLRVSALINQNTLQWDWNKIAVILPNYENLIKQLPAP-----SS 891
Query: 417 TAYDERVWRPGKRGIYTVRS 436
D+ W P K G YT RS
Sbjct: 892 RGVDKLAWLPVKSGQYTSRS 911
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411392|pir||B84497 hypothetical protein
At2g11240 [imported] - Arabidopsis thaliana
Length = 1044
Score = 169 bits (429), Expect = 1e-40
Identities = 83/188 (44%), Positives = 113/188 (59%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K +MSKAYDRI W++++ VM +GF W WI+ C+ +V Y L+N ++G + P
Sbjct: 397 MAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPE 456
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSP+LFI+C++ L+ L KA+ G L G+RV G P HLLF DD FCR
Sbjct: 457 RGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCR 516
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
+ + IL YE+ASGQ IN KS I FS+ K IL + + GKY
Sbjct: 517 SDLKSCKTFLCILKKYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKY 576
Query: 181 LGLPSVIG 188
LGLP + G
Sbjct: 577 LGLPKMFG 584
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 169 bits (429), Expect = 1e-40
Identities = 87/188 (46%), Positives = 107/188 (56%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K D+SKAYDR+ W +L M GF W WIM V+SV Y VLVN G I P
Sbjct: 933 MAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQ 992
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R+GDPLSPYLFILCA L LI GD+ G+R+ G P THL F DD FC+
Sbjct: 993 RGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQ 1052
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
+ R ALK++ +YE SGQ+IN KS I F V + + NIL + GKY
Sbjct: 1053 SNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKY 1112
Query: 181 LGLPSVIG 188
LGLP G
Sbjct: 1113 LGLPEQFG 1120
Score = 41.6 bits (96), Expect = 0.062
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKI 352
+KARY+R ++I +A + SY W S+ + ++K+G+R+ +G+G +
Sbjct: 1247 MKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTV 1294
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 169 bits (429), Expect = 1e-40
Identities = 87/188 (46%), Positives = 107/188 (56%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K D+SKAYDR+ W +L M GF W WIM V+SV Y VLVN G I P
Sbjct: 953 MAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQ 1012
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R+GDPLSPYLFILCA L LI GD+ G+R+ G P THL F DD FC+
Sbjct: 1013 RGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQ 1072
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
+ R ALK++ +YE SGQ+IN KS I F V + + NIL + GKY
Sbjct: 1073 SNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKY 1132
Query: 181 LGLPSVIG 188
LGLP G
Sbjct: 1133 LGLPEQFG 1140
Score = 41.2 bits (95), Expect = 0.080
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNG 349
+KARY+R ++I +A + SY W S+ + ++K+G+R+ +G+G
Sbjct: 1267 MKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDG 1311
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 168 bits (425), Expect = 4e-40
Identities = 86/187 (45%), Positives = 112/187 (58%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ K DMSKAYDR+ W +L +M LGF+ KW WIM CV SV Y VL+N + G I+P
Sbjct: 549 MAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPT 608
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R+GDPLSP LF+LC + L +++KAE G + G++ + HLLF DD L C+
Sbjct: 609 RGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCK 668
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
AT +E L LS Y SGQ IN KS I F KNV K I + +++ TGKY
Sbjct: 669 ATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKY 728
Query: 181 LGLPSVI 187
LGLP +
Sbjct: 729 LGLPECL 735
Score = 67.0 bits (162), Expect = 1e-09
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 306 KARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGGL 365
++RY+ + A +G+ SY W+SI ++ QG R IGNG K V+ D+WL +G
Sbjct: 864 QSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSN 923
Query: 366 AQPAA*YNRL----LQLNVKELLQPGQKSWNLDVLQHYL--SSQSVFEAMNTLLFNSTAY 419
+P NR + L V +L+ P ++WNL++L+ + L F
Sbjct: 924 RRP---LNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLFFKE--- 977
Query: 420 DERVWRPGKRGIYTVRSASRF 440
D W G+Y+V++ F
Sbjct: 978 DSFCWLHSHNGLYSVKTGYEF 998
>ref|XP_474837.1| OSJNBa0052O21.12 [Oryza sativa (japonica cultivar-group)]
gi|38345009|emb|CAE01608.2| OSJNBa0052O21.12 [Oryza
sativa (japonica cultivar-group)]
Length = 427
Score = 168 bits (425), Expect = 4e-40
Identities = 83/182 (45%), Positives = 111/182 (60%)
Query: 7 MSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPGSGLRKG 66
M KAYDR+ W +L +L+LGF W +M CV SV+Y V +N E P+ P GLR+G
Sbjct: 1 MMKAYDRVEWSFLHGCLLKLGFADPWIQTVMRCVTSVRYAVRINGELTNPVTPSRGLRQG 60
Query: 67 DPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCRAT*REV 126
DP+SPYLF+LC +GL+S++ K E G + G+R P +HLLF DD F R+ V
Sbjct: 61 DPISPYLFLLCTEGLSSILQKKESMGVIQGIRNGRLGPPISHLLFADDSIFFARSDLHSV 120
Query: 127 NALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKYLGLPSV 186
LK+ L Y ASGQ+IN QKS IFF +N K ++ LQV++ I YLG+P+
Sbjct: 121 QGLKDALQAYCKASGQKINLQKSSIFFGQNCLEDIKNSVKETLQVSVEILQDTYLGMPTE 180
Query: 187 IG 188
IG
Sbjct: 181 IG 182
Score = 49.7 bits (117), Expect = 2e-04
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWL 360
LK RY+ + ++ A K S+ W SI ++++G RW IGNG +++ +D W+
Sbjct: 309 LKGRYFPNSDLWNAPKPTATSFTWPSILFGRDLLRKGVRWGIGNGSSVKILKDHWI 364
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.344 0.154 0.514
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 808,614,204
Number of Sequences: 2540612
Number of extensions: 32270032
Number of successful extensions: 107567
Number of sequences better than 10.0: 718
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 106373
Number of HSP's gapped (non-prelim): 946
length of query: 520
length of database: 863,360,394
effective HSP length: 133
effective length of query: 387
effective length of database: 525,458,998
effective search space: 203352632226
effective search space used: 203352632226
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 77 (34.3 bits)
Medicago: description of AC147202.9