BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147178.5 + phase: 0 /pseudo
(676 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10766.1| unnamed protein product [Arabidopsis thaliana] g... 265 5e-69
gb|AAG01125.1| BAC19.10 [Lycopersicon esculentum] 159 3e-37
gb|AAO51571.1| similar to Mus musculus (Mouse). N/A [Dictyosteli... 111 9e-23
gb|AAH00285.1| POLR3E protein [Homo sapiens] 89 6e-16
dbj|BAA91655.1| unnamed protein product [Homo sapiens] gi|294280... 89 6e-16
gb|AAM18215.1| RNA polymerase III 80 kDa subunit RPC5 [Homo sapi... 89 6e-16
dbj|BAD96391.1| polymerase (RNA) III (DNA directed) polypeptide ... 89 6e-16
dbj|BAA95976.1| KIAA1452 protein [Homo sapiens] 89 6e-16
ref|NP_079574.2| sex-lethal interactor homolog [Mus musculus] gi... 88 1e-15
dbj|BAB14437.1| unnamed protein product [Homo sapiens] 88 1e-15
gb|AAH80898.1| Polr3e-prov protein [Xenopus tropicalis] gi|56118... 87 1e-15
dbj|BAB28084.1| unnamed protein product [Mus musculus] 87 1e-15
dbj|BAD96509.1| polymerase (RNA) III (DNA directed) polypeptide ... 87 2e-15
ref|XP_341920.2| PREDICTED: similar to Sex-lethal interactor hom... 86 3e-15
ref|XP_511201.1| PREDICTED: similar to KIAA1452 protein [Pan tro... 86 5e-15
gb|AAH48877.1| RNA polymerase III 80 kDa subunit RPC5 [Danio rer... 84 1e-14
ref|NP_001016970.1| hypothetical protein LOC549724 [Xenopus trop... 83 3e-14
ref|XP_583740.1| PREDICTED: similar to DNA-directed RNA polymera... 81 1e-13
ref|XP_651187.1| conserved hypothetical protein [Entamoeba histo... 80 2e-13
gb|AAH72054.1| MGC78924 protein [Xenopus laevis] 78 1e-12
>dbj|BAB10766.1| unnamed protein product [Arabidopsis thaliana]
gi|15240503|ref|NP_199764.1| SIN-like family protein
[Arabidopsis thaliana]
Length = 689
Score = 265 bits (676), Expect = 5e-69
Identities = 163/374 (43%), Positives = 224/374 (59%), Gaps = 28/374 (7%)
Query: 1 MDFDDLDAPVK-PRVSRFAP-KSSKFKPK-KEEPSLVPKSEPPPLAS----AKTEPQEID 53
MDFDD D P + + RFAP ++ K KPK K EP+ +PPP + +KTE
Sbjct: 1 MDFDDDDKPKEVTKTRRFAPGRAGKSKPKPKPEPTADKPVQPPPQSQTESVSKTEHDVDA 60
Query: 54 LTAPTPVKHEP-NASVKTDAESKIEGKVDSRNVDVEMTEAVDGSREVNPMDEE------- 105
T V+ E N SVK + +SK++ + ++ TE ++ +++ P+ EE
Sbjct: 61 KFVGTKVETEVCNGSVKMEIDSKVD-----KEPEIMETELMEEDQQL-PLQEEKEEEEEE 114
Query: 106 -DTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDLSI 164
D VVREIDV+F PSID +T+LYV+QYPLRPSWRPY++DE+CEEVR+ P TS+VE+DLS+
Sbjct: 115 DDVVVREIDVFFKPSIDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPSTSQVEIDLSM 174
Query: 165 DLESYNVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHLHPIHAVVQLRPSRH 224
D+ S N + L TKQTL TTWK PP AVG+L GDKLHL+P+HAV QLRPS
Sbjct: 175 DVHSKNYDSNFG--LNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPS-- 230
Query: 225 YLDSGGSEKKNVATSNNQNKQTTPSMEQKSDGAPSIEQKSDSNQCWVPLEYHGCKSDISS 284
+ S S+KK + + T + K S +QK + + WV L+YHG +S+ S
Sbjct: 231 -MQSLSSDKKKKQEESTEESVGTSKKQNKGVQQASTDQKPINEETWVSLKYHGLQSEYCS 289
Query: 285 RYFQQMVTHESSPINFEMSTYDYIATLCPGVSS-NTLAKGPSKRYLLSLPVEKRLQTLLI 343
RY M+ + +S I+F MS YI LC G SS N+ +K KR LLSLP+++R+Q LL
Sbjct: 290 RYLNGMMANGNSSIDFNMSPGTYINELCRGGSSRNSESKETLKRVLLSLPLKERVQKLLC 349
Query: 344 ESNNRTLYDRALHF 357
E + Y H+
Sbjct: 350 EGSPLIRYSVLKHY 363
Score = 96.7 bits (239), Expect = 2e-18
Identities = 53/114 (46%), Positives = 73/114 (63%), Gaps = 4/114 (3%)
Query: 563 VCSFQLICQELRGLALAQTMLPKGGSKMSVDAANSLDVPQDELKAILGEVACDIHGCYVL 622
VC ++ ICQ LR LA++ + PK S M+V+ A ++D Q EL+ ++ VA +IHG YV
Sbjct: 558 VCRYETICQGLRDLAVSTSNNPKADSGMAVNVALAVDAYQGELEDVINGVATNIHGSYVS 617
Query: 623 KSAQNDP----FRDVVIDMLRGSGPNGKLKKAEILEAARRKLGRDVPNNEYIKV 672
S+ + P R+VVI +L GS P KL KAE+ A R KL R++ NNEYIKV
Sbjct: 618 ISSPDHPEYDSLREVVISLLTGSPPGTKLMKAEVFAAGRTKLEREITNNEYIKV 671
>gb|AAG01125.1| BAC19.10 [Lycopersicon esculentum]
Length = 683
Score = 159 bits (402), Expect = 3e-37
Identities = 97/257 (37%), Positives = 144/257 (55%), Gaps = 29/257 (11%)
Query: 5 DLDAPVK--PRVSRFAPKSSKFKPKKEEPSLVPKSEPPPL---ASAKTEPQEIDLTAPTP 59
D D P K R +RFAPK+SK KP+ PKSE PL + T+ +E P
Sbjct: 4 DFDGPSKVPSRQARFAPKNSKLKPQ-------PKSETLPLKVDSEIPTKKEEFVSQPPLR 56
Query: 60 VKHEPNASVKTDAESKIEGKVDSRNVDVEMTEAVDGSREVNPMDEEDTVVREIDVYFSPS 119
N K + + + G+ ++ E S ++D VVRE+DV+ +PS
Sbjct: 57 DHIVKNGEAKVEDDVLLNGETTGNDLAEEQVGMETDS-------DQDEVVREVDVWLTPS 109
Query: 120 IDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDLSIDLESYNVEKATADKL 179
+ + YV+QYPLR WRPY LDE+C++VRL+P ++E+EVDL+ID +S N ++ +
Sbjct: 110 AN---EFYVLQYPLRSEWRPYGLDERCQDVRLRPSSAEMEVDLAIDFDSKNFDRDSVHAA 166
Query: 180 KYTKQTLSTTWKPPPANGC---AVGLLMGDKLHLHPIHAVVQLRPSRHYLDSGGSEKKNV 236
KQ +ST W P++ C AVG+ +GDK HL+P+HA+VQLRPS + SE KN+
Sbjct: 167 TIKKQIVSTKW--VPSSTCADFAVGIFIGDKFHLNPVHAIVQLRPSLQHRKE--SELKNL 222
Query: 237 ATSNNQNKQTTPSMEQK 253
TSN++ +++K
Sbjct: 223 TTSNDEKSCENEDVKEK 239
Score = 73.6 bits (179), Expect = 2e-11
Identities = 40/101 (39%), Positives = 61/101 (59%), Gaps = 4/101 (3%)
Query: 576 LALAQTMLPKGGSKMSVDAANSLDVPQDELKAILGEVACDIHGCYVLKSAQNDP----FR 631
L + + M + K + A D + E++A++ ++A +IHG YVLKS+ ++P R
Sbjct: 527 LQICELMEKEDPMKAIISPAGISDALRKEIEAVVNQIAVNIHGVYVLKSSPDNPQYDALR 586
Query: 632 DVVIDMLRGSGPNGKLKKAEILEAARRKLGRDVPNNEYIKV 672
VVID+ G N KLKKA I+EAA+ +LGRDV E+ K+
Sbjct: 587 KVVIDLFMAEGSNAKLKKASIVEAAKLQLGRDVTTVEFQKL 627
>gb|AAO51571.1| similar to Mus musculus (Mouse). N/A [Dictyostelium discoideum]
gi|66824391|ref|XP_645550.1| putative RNA polymerase III
subunit [Dictyostelium discoideum]
gi|60473681|gb|EAL71621.1| putative RNA polymerase III
subunit [Dictyostelium discoideum]
Length = 657
Score = 111 bits (277), Expect = 9e-23
Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 67/348 (19%)
Query: 48 EPQEIDLTAPTPVKHEPNASVKTDAESKIEGKVDSRNVDVEMTEAVDGSREVNPM----- 102
EP++ID+T T P + T + ++ +E+ E + E P
Sbjct: 10 EPKDIDMTETTK---SPQKTTTTTTTTTTTTNTNTDKATIELDELDEYEEEKIPPPPKTK 66
Query: 103 ----------DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLK 152
+EED V+ EI VY S S+ + LY+ QYPLR WRPYD+ + EE+R+K
Sbjct: 67 VIINGVEEEEEEEDYVIHEIPVYLSQSLSD--YLYLFQYPLRQPWRPYDMSK-LEELRIK 123
Query: 153 PGTSEVEVDLSIDLES--YNVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHL 210
P +VE+DLSID +S YN + T K TK TLS+T N A+GL+ ++LHL
Sbjct: 124 PKQQKVEMDLSIDPDSDNYNPDAQT----KTTKYTLSSTTVSHRTN-YAIGLMKSNELHL 178
Query: 211 HPIHAVVQLRPSRHYLDSGGSE-----KKNVATSNNQNKQT------------------T 247
P+ +++QLRP +Y D E K++ + Q++++
Sbjct: 179 TPLQSIIQLRPQFNYFDDKWQEEKLRKKQDTKDDDEQDEESGNGGGGGGNGQSIDPLNKI 238
Query: 248 PSMEQKSDGA--------PSIEQKSDSNQCWVPL-----EYHGCKSDISSRYFQQMVTHE 294
SM+ K GA P+I ++ ++ + W+ + E+ G ++ ++ +
Sbjct: 239 ASMQFKKAGAKVSAANQQPNIIKQIENEEQWIKVNLVDDEFDG---ELIKQFEKLQCEDI 295
Query: 295 SSPINFEMSTYDYIATLCPGVSSNTLAKGPSKRYLLSLPVEKRLQTLL 342
+ I ++++ Y LCP V ++K +SL ++ L
Sbjct: 296 YTDIKYDLNESQYFDMLCPRVPDEWVSKAAYIHETVSLETVHKMSLAL 343
>gb|AAH00285.1| POLR3E protein [Homo sapiens]
Length = 666
Score = 88.6 bits (218), Expect = 6e-16
Identities = 80/268 (29%), Positives = 121/268 (44%), Gaps = 57/268 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D VV+EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPVVQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ + A L
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 121 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G + S Q ++ SS
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSS--------- 231
Query: 306 DYIATLCPGVSSNTLAKGPSKRYLLSLP 333
GV + L K PS+ ++ +P
Sbjct: 232 --------GVENTELVKSPSEYLMMLMP 251
>dbj|BAA91655.1| unnamed protein product [Homo sapiens]
gi|29428028|sp|Q9NVU0|RPC5_HUMAN DNA-directed RNA
polymerases III 80 kDa polypeptide (RNA polymerase III
subunit 5) (RPC5) gi|8922477|ref|NP_060589.1| polymerase
(RNA) III (DNA directed) polypeptide E [Homo sapiens]
Length = 708
Score = 88.6 bits (218), Expect = 6e-16
Identities = 80/268 (29%), Positives = 121/268 (44%), Gaps = 57/268 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D VV+EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPVVQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ + A L
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 121 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G + S Q ++ SS
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSS--------- 231
Query: 306 DYIATLCPGVSSNTLAKGPSKRYLLSLP 333
GV + L K PS+ ++ +P
Sbjct: 232 --------GVENTELVKSPSEYLMMLMP 251
>gb|AAM18215.1| RNA polymerase III 80 kDa subunit RPC5 [Homo sapiens]
Length = 708
Score = 88.6 bits (218), Expect = 6e-16
Identities = 80/268 (29%), Positives = 121/268 (44%), Gaps = 57/268 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D VV+EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPVVQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ + A L
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 121 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G + S Q ++ SS
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSS--------- 231
Query: 306 DYIATLCPGVSSNTLAKGPSKRYLLSLP 333
GV + L K PS+ ++ +P
Sbjct: 232 --------GVENTELVKSPSEYLMMLMP 251
>dbj|BAD96391.1| polymerase (RNA) III (DNA directed) polypeptide E variant [Homo
sapiens]
Length = 389
Score = 88.6 bits (218), Expect = 6e-16
Identities = 80/268 (29%), Positives = 121/268 (44%), Gaps = 57/268 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D VV+EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPVVQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ + A L
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 121 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G + S Q ++ SS
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSS--------- 231
Query: 306 DYIATLCPGVSSNTLAKGPSKRYLLSLP 333
GV + L K PS+ ++ +P
Sbjct: 232 --------GVENTELVKSPSEYLMMLMP 251
>dbj|BAA95976.1| KIAA1452 protein [Homo sapiens]
Length = 694
Score = 88.6 bits (218), Expect = 6e-16
Identities = 80/268 (29%), Positives = 121/268 (44%), Gaps = 57/268 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D VV+EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 44 EEDDPVVQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 100
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ + A L
Sbjct: 101 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR 160
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 161 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 220
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G + S Q ++ SS
Sbjct: 221 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSS--------- 271
Query: 306 DYIATLCPGVSSNTLAKGPSKRYLLSLP 333
GV + L K PS+ ++ +P
Sbjct: 272 --------GVENTELVKSPSEYLMMLMP 291
>ref|NP_079574.2| sex-lethal interactor homolog [Mus musculus]
gi|22902247|gb|AAH37637.1| Sex-lethal interactor homolog
[Mus musculus] gi|29427993|sp|Q9CZT4|RPC5_MOUSE
DNA-directed RNA polymerases III 80 kDa polypeptide (RNA
polymerase III subunit 5) (RPC5) (Sex-lethal interactor
homolog)
Length = 710
Score = 87.8 bits (216), Expect = 1e-15
Identities = 79/268 (29%), Positives = 120/268 (44%), Gaps = 57/268 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D V++EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPVIQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ A L
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 121 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G + S Q ++ SS
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSS--------- 231
Query: 306 DYIATLCPGVSSNTLAKGPSKRYLLSLP 333
GV + L K PS+ ++ +P
Sbjct: 232 --------GVENTELVKSPSEYLMMLMP 251
>dbj|BAB14437.1| unnamed protein product [Homo sapiens]
Length = 666
Score = 87.8 bits (216), Expect = 1e-15
Identities = 79/268 (29%), Positives = 122/268 (45%), Gaps = 57/268 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D VV+EI+VY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPVVQEINVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ + A L
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGSEKK-----NVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD +E + N A ++Q+ KQ T P
Sbjct: 121 QGELHLTPLHGILQLRPSFSYLDKADAEHREREAANEAGDSSQDEAEDDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G + S Q ++ SS
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSS--------- 231
Query: 306 DYIATLCPGVSSNTLAKGPSKRYLLSLP 333
GV + L K PS+ ++ +P
Sbjct: 232 --------GVENTELVKSPSEYLMMLMP 251
>gb|AAH80898.1| Polr3e-prov protein [Xenopus tropicalis]
gi|56118648|ref|NP_001008020.1| polr3e-prov protein
[Xenopus tropicalis]
Length = 547
Score = 87.4 bits (215), Expect = 1e-15
Identities = 73/273 (26%), Positives = 118/273 (42%), Gaps = 49/273 (17%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+++D VV+EIDV+ + S+ KLY++QYP+RP+ YD D R+KP ++E+++
Sbjct: 4 EDDDPVVQEIDVFLAKSLSE--KLYLLQYPIRPASMTYD-DVTHVSTRIKPKEQKMEMEI 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+++ ES NV+ A+ D KQT S+ A L
Sbjct: 61 AMNTESPNYCCSKGEQIALNVDGASNDDTSTYSTKLMDKQTFSSIQAESNTTRYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGSEKKNVATSNNQNKQTTPSMEQKSDGAPSIE--- 261
++HL P+H ++Q+RPS YLD ++ K +N PS ++ D +
Sbjct: 121 KGEIHLTPLHGILQMRPSFTYLDKADTKFKEREAANEGG---DPSQDEAEDDVKQVNVRF 177
Query: 262 -------------------QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPI-NFE 301
QK + + WV L Y G K S Q ++ +S N E
Sbjct: 178 SRPESEKAKQRRVQSYEFLQKKQAEENWVHLHYSGVKDSRSEHERQYLLCQNTSVADNME 237
Query: 302 M--STYDYIATLCPGVSSNTLAKGPSKRYLLSL 332
+ S DY++ L P K + +LSL
Sbjct: 238 LTKSPRDYLSMLMPSNVEEEKKKPVAPSNVLSL 270
>dbj|BAB28084.1| unnamed protein product [Mus musculus]
Length = 710
Score = 87.4 bits (215), Expect = 1e-15
Identities = 77/251 (30%), Positives = 116/251 (45%), Gaps = 43/251 (17%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D V++EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPVIQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ A L
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 121 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPI---NFEM 302
EQ + S E QK + + WV L Y+G + S Q ++ SS + F
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVENTEFVK 240
Query: 303 STYDYIATLCP 313
S +Y+ L P
Sbjct: 241 SPSEYLMMLMP 251
>dbj|BAD96509.1| polymerase (RNA) III (DNA directed) polypeptide E variant [Homo
sapiens]
Length = 708
Score = 86.7 bits (213), Expect = 2e-15
Identities = 79/268 (29%), Positives = 120/268 (44%), Gaps = 57/268 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D VV+EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPVVQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ + A L
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRP YLD + E N A ++Q+ KQ T P
Sbjct: 121 QGELHLTPLHGILQLRPRFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G + S Q ++ SS
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSS--------- 231
Query: 306 DYIATLCPGVSSNTLAKGPSKRYLLSLP 333
GV + L K PS+ ++ +P
Sbjct: 232 --------GVENTELVKSPSEYLMMLMP 251
>ref|XP_341920.2| PREDICTED: similar to Sex-lethal interactor homolog [Rattus
norvegicus]
Length = 708
Score = 86.3 bits (212), Expect = 3e-15
Identities = 78/268 (29%), Positives = 119/268 (44%), Gaps = 57/268 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D V++EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPVIQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A D+ KQT ++ A L
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACTDETSTYSSKLMDKQTFCSSQTTSNTARYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 121 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G + S Q ++ SS
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSS--------- 231
Query: 306 DYIATLCPGVSSNTLAKGPSKRYLLSLP 333
GV + L K PS+ ++ +P
Sbjct: 232 --------GVENTELVKSPSEYLMMLMP 251
>ref|XP_511201.1| PREDICTED: similar to KIAA1452 protein [Pan troglodytes]
Length = 807
Score = 85.5 bits (210), Expect = 5e-15
Identities = 84/278 (30%), Positives = 129/278 (46%), Gaps = 48/278 (17%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D VV+EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 90 EEDDPVVQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 146
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ + A L
Sbjct: 147 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR 206
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 207 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 266
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPI-NFEMST 304
EQ + S E QK + + WV L Y+G + S Q ++ SS + N E+
Sbjct: 267 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVK 326
Query: 305 YDYIATLCPGVSSNTLAKGPSKRYLLSLPVEKRLQTLL 342
+ P SN L S L +LP+ +++ L+
Sbjct: 327 SPRDKPVAP---SNVL----SMAQLRTLPLADQIKILM 357
>gb|AAH48877.1| RNA polymerase III 80 kDa subunit RPC5 [Danio rerio]
gi|47086541|ref|NP_997919.1| RNA polymerase III 80 kDa
subunit RPC5 [Danio rerio]
Length = 696
Score = 84.0 bits (206), Expect = 1e-14
Identities = 80/288 (27%), Positives = 134/288 (45%), Gaps = 53/288 (18%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
D++D +++EIDVY + S+ KLY+ QYP+RP Y+ ++KP +VE+++
Sbjct: 5 DDDDPIIQEIDVYLARSLVE--KLYLFQYPVRPGSMSYNNVTHLG-AKIKPKQQKVELEV 61
Query: 163 SIDLESYNVEKATADKLK-------------YT-----KQTLSTTWKPPPANGCAVGLLM 204
++D S N ++ +++ YT KQT S+ + A +
Sbjct: 62 AMDTMSPNYSRSKGEQIALNVDGMSSEDSNVYTTKMMDKQTFSSIQATTNTSRYAAAVFH 121
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+ ++Q+RPS YLD + E N A ++Q+ KQ T P
Sbjct: 122 KGELHLTPLQGILQMRPSFTYLDKADTKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 181
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSR-----YFQQMVTHESSPINF 300
EQ + S E QK + + WV L YH K S Y Q M T E++ +
Sbjct: 182 ESEQARQRRIQSYEFLQKKQAEEPWVHLHYHAIKDSRSEHERQYLYCQAMDTTENTEL-- 239
Query: 301 EMSTYDYIATLCPGVSSNTLAK--GPSK----RYLLSLPVEKRLQTLL 342
+ +Y++ L P ++ + K GPS L +LP+ +++TL+
Sbjct: 240 VKTPREYLSMLMPPLAEEKVVKPVGPSNVLSMAQLRTLPLGDQVKTLM 287
>ref|NP_001016970.1| hypothetical protein LOC549724 [Xenopus tropicalis]
Length = 697
Score = 82.8 bits (203), Expect = 3e-14
Identities = 68/251 (27%), Positives = 113/251 (44%), Gaps = 43/251 (17%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+++D +++EIDV+ + S+ KLY+ QYP+RP+ YD D R+KP ++E+++
Sbjct: 4 EDDDPIIQEIDVFLAKSLSE--KLYLFQYPIRPASMTYD-DVTHLSTRIKPKQQKMEMEI 60
Query: 163 SIDLESYNVEKATADKLKYT------------------KQTLSTTWKPPPANGCAVGLLM 204
+I+ S N ++ +++ KQ S+ A L
Sbjct: 61 AINTVSPNYCRSKGEQIALNVDGTSNDDTSTYSTKLMDKQIFSSIQAASNTTRYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGSEKKNVATSN-----------NQNKQTT------ 247
++HL P+H ++Q+RPS YLD ++ K +N + KQ T
Sbjct: 121 KGEIHLTPLHGILQMRPSFTYLDKADTKFKEREAANEGGDSSQDEVEDDIKQVTVRFSRP 180
Query: 248 PSMEQKSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPI-NFEM-- 302
S + K A S E QK + + WV L Y G K S Q ++ +S N E+
Sbjct: 181 ESEKAKQRRAQSYEFLQKKQAEETWVHLHYSGVKDSRSEHERQYLLCQNTSVADNMELTK 240
Query: 303 STYDYIATLCP 313
S DY++ L P
Sbjct: 241 SPRDYLSMLMP 251
>ref|XP_583740.1| PREDICTED: similar to DNA-directed RNA polymerases III 80 kDa
polypeptide (RNA polymerase III subunit 5) (RPC5),
partial [Bos taurus]
Length = 316
Score = 80.9 bits (198), Expect = 1e-13
Identities = 76/259 (29%), Positives = 113/259 (43%), Gaps = 57/259 (22%)
Query: 112 IDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDLSIDLES--- 168
IDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE++++ID +
Sbjct: 1 IDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEMAIDTLNPNY 57
Query: 169 ---------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLMGDKLHLHPI 213
NV+ A AD+ KQT ++ + A L +LHL P+
Sbjct: 58 CRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPL 117
Query: 214 HAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----PSMEQ-KSDG 256
H ++QLRPS YLD + E N A ++Q+ KQ T P EQ +
Sbjct: 118 HGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITVRFSRPESEQARQRR 177
Query: 257 APSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTYDYIATLCPG 314
S E QK + + WV L YHG + S Q ++ SS G
Sbjct: 178 VQSYEFLQKKHAEEPWVHLHYHGLRDSRSEHERQYLLCQGSS-----------------G 220
Query: 315 VSSNTLAKGPSKRYLLSLP 333
V + L K PS+ ++ +P
Sbjct: 221 VENTELVKSPSEYLMMLMP 239
>ref|XP_651187.1| conserved hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56467889|gb|EAL45799.1| conserved hypothetical
protein [Entamoeba histolytica HM-1:IMSS]
Length = 549
Score = 80.5 bits (197), Expect = 2e-13
Identities = 63/219 (28%), Positives = 100/219 (44%), Gaps = 16/219 (7%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
DE D V E+ VY S N+ +L++MQYP R +WRP+DL Q +EVR KP +E+D+
Sbjct: 6 DENDPVELEMPVYLCDS--NEQELFLMQYPTRLAWRPFDL-SQVKEVRYKPLQKGIEMDV 62
Query: 163 SIDLESYNVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDK----LHLHPIHAVVQ 218
++ + + E K T QT T AN AVG + K L L P+ + Q
Sbjct: 63 KLEQDFIDEESI----YKITSQTYKGTVTENKAN-YAVGFVKEVKNQPTLVLFPVSTIAQ 117
Query: 219 LRPSRHYLDSG----GSEKKNVATSNNQNKQTTPSMEQKSDGAPSIEQKSDSNQCWVPLE 274
+RP Y+D EK T++ + K+ S + K D + + ++
Sbjct: 118 MRPQLQYIDEDIIDEKPEKAEGMTADGKKKKIAVSAAPTKKQKDLEQLKKDEAEEAIKMK 177
Query: 275 YHGCKSDISSRYFQQMVTHESSPINFEMSTYDYIATLCP 313
+ S+ + ++M+ I +E +YI L P
Sbjct: 178 LNDTTSNETIEVVERMIKSSKGKIEWENDVKEYINKLAP 216
>gb|AAH72054.1| MGC78924 protein [Xenopus laevis]
Length = 701
Score = 77.8 bits (190), Expect = 1e-12
Identities = 66/251 (26%), Positives = 114/251 (45%), Gaps = 43/251 (17%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+++D +++EIDV+ + S+ KLY+ QYP+RP+ YD R+KP +VE+++
Sbjct: 4 EDDDPIIQEIDVFLAKSLSE--KLYLFQYPIRPASMTYDGVTHLS-ARIKPKQQKVEMEM 60
Query: 163 SIDLESYNVEKATADKLKYT------------------KQTLSTTWKPPPANGCAVGLLM 204
+I+ S N ++ +++ KQT ++ + AV
Sbjct: 61 AINTASPNYCRSKGEQIALNVDGTSNDETSTYSTKLMDKQTFTSIQAASNTSRYAVAFYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGSEKKNVATSNNQN-----------KQTT-----P 248
++H+ P++ ++Q+RPS YLD ++ K +N KQ T P
Sbjct: 121 KGEVHVTPLNGILQMRPSFTYLDKADTKFKEREAANEGGDSSQDEVEEDVKQVTVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPI-NFEM-- 302
EQ K A S E QK + + WV L Y K S Q ++ +S N E+
Sbjct: 181 ESEQAKQRRAQSYEFLQKKQAEETWVHLHYSSVKDSRSEHERQYLLCQNTSVADNMELVK 240
Query: 303 STYDYIATLCP 313
S+ +Y++ L P
Sbjct: 241 SSREYLSMLMP 251
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.327 0.140 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,097,392,737
Number of Sequences: 2540612
Number of extensions: 45245282
Number of successful extensions: 208415
Number of sequences better than 10.0: 219
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 206929
Number of HSP's gapped (non-prelim): 965
length of query: 676
length of database: 863,360,394
effective HSP length: 135
effective length of query: 541
effective length of database: 520,377,774
effective search space: 281524375734
effective search space used: 281524375734
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 79 (35.0 bits)
Medicago: description of AC147178.5