BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147178.1 - phase: 0
(79 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB16825.1| putative protein [Arabidopsis thaliana] gi|72706... 92 3e-18
gb|AAS76284.1| At4g36720 [Arabidopsis thaliana] gi|57012586|sp|Q... 92 3e-18
pir||JC4667 TB2/DP1 protein homolog - mouse gi|1142716|gb|AAB079... 37 0.17
dbj|BAB28678.1| unnamed protein product [Mus musculus] gi|128460... 37 0.17
ref|NP_031900.2| deleted in polyposis 1 [Mus musculus] gi|153417... 37 0.17
ref|XP_344662.2| PREDICTED: similar to receptor expression enhan... 37 0.17
gb|AAT70678.1| receptor expression enhancing protein 5 [Mus musc... 37 0.17
ref|NP_473279.1| conserved protein, putative [Plasmodium falcipa... 36 0.29
gb|AAT70688.1| receptor expression enhancing protein 5 [Homo sap... 35 0.49
gb|AAA60136.1| polyposis locus-encoded protein 35 0.49
gb|AAH65926.1| Chromosome 5 open reading frame 18 [Homo sapiens]... 35 0.49
ref|XP_536283.1| PREDICTED: similar to TB2 [Canis familiaris] 35 0.49
ref|XP_517877.1| PREDICTED: similar to TB2 [Pan troglodytes] 35 0.49
emb|CAH89974.1| hypothetical protein [Pongo pygmaeus] 35 0.49
gb|AAA66351.1| TB2 35 0.49
ref|NP_499990.1| polyposis locus protein 1 (22.8 kD) (4B543) [Ca... 34 1.1
ref|XP_543255.1| PREDICTED: similar to RIKEN cDNA 2700029E10 [Ca... 33 1.4
gb|AAH90826.1| Zgc:101744 [Danio rerio] gi|61806644|ref|NP_00101... 33 1.9
ref|XP_519644.1| PREDICTED: similar to hairless protein isoform ... 33 1.9
gb|AAF36016.1| Hypothetical protein Y71F9B.3 [Caenorhabditis ele... 33 1.9
>emb|CAB16825.1| putative protein [Arabidopsis thaliana]
gi|7270620|emb|CAB80338.1| putative protein
[Arabidopsis thaliana] gi|15234503|ref|NP_195390.1|
abscisic acid-responsive HVA22 family protein
[Arabidopsis thaliana] gi|25407759|pir||F85433
hypothetical protein AT4g36720 [imported] - Arabidopsis
thaliana
Length = 227
Score = 92.4 bits (228), Expect = 3e-18
Identities = 40/64 (62%), Positives = 54/64 (83%)
Query: 2 ALPLIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRCL 61
++ L+GS + EVGLR+L PL S++V+RTACCS+GIGLPVYSTFKAIES +++ QQ+ L
Sbjct: 10 SMALLGSGLTGEVGLRVLFSPLSSNIVLRTACCSIGIGLPVYSTFKAIESGDENEQQKML 69
Query: 62 VYWA 65
+YWA
Sbjct: 70 IYWA 73
>gb|AAS76284.1| At4g36720 [Arabidopsis thaliana] gi|57012586|sp|Q6NLY8|A22K_ARATH
HVA22-like protein k (AtHVA22k)
Length = 200
Score = 92.4 bits (228), Expect = 3e-18
Identities = 40/64 (62%), Positives = 54/64 (83%)
Query: 2 ALPLIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRCL 61
++ L+GS + EVGLR+L PL S++V+RTACCS+GIGLPVYSTFKAIES +++ QQ+ L
Sbjct: 10 SMALLGSGLTGEVGLRVLFSPLSSNIVLRTACCSIGIGLPVYSTFKAIESGDENEQQKML 69
Query: 62 VYWA 65
+YWA
Sbjct: 70 IYWA 73
>pir||JC4667 TB2/DP1 protein homolog - mouse gi|1142716|gb|AAB07994.1| GP106
gi|2498308|sp|Q60870|DP1_MOUSE Polyposis locus protein
1 homolog (TB2 protein homolog) (GP106)
Length = 185
Score = 36.6 bits (83), Expect = 0.17
Identities = 15/32 (46%), Positives = 19/32 (58%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C +G G P Y + KAIES N+D + L YW
Sbjct: 55 CNLIGFGYPAYISMKAIESPNKDDDTQWLTYW 86
>dbj|BAB28678.1| unnamed protein product [Mus musculus]
gi|12846004|dbj|BAB26991.1| unnamed protein product
[Mus musculus]
Length = 185
Score = 36.6 bits (83), Expect = 0.17
Identities = 15/32 (46%), Positives = 19/32 (58%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C +G G P Y + KAIES N+D + L YW
Sbjct: 55 CNLIGFGYPAYISMKAIESPNKDDDTQWLTYW 86
>ref|NP_031900.2| deleted in polyposis 1 [Mus musculus] gi|15341776|gb|AAH13052.1|
Deleted in polyposis 1 [Mus musculus]
Length = 185
Score = 36.6 bits (83), Expect = 0.17
Identities = 15/32 (46%), Positives = 19/32 (58%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C +G G P Y + KAIES N+D + L YW
Sbjct: 55 CNLIGFGYPAYISMKAIESPNKDDDTQWLTYW 86
>ref|XP_344662.2| PREDICTED: similar to receptor expression enhancing protein 5
[Rattus norvegicus]
Length = 189
Score = 36.6 bits (83), Expect = 0.17
Identities = 15/32 (46%), Positives = 19/32 (58%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C +G G P Y + KAIES N+D + L YW
Sbjct: 59 CNLIGFGYPAYISMKAIESPNKDDDTQWLTYW 90
>gb|AAT70678.1| receptor expression enhancing protein 5 [Mus musculus]
Length = 189
Score = 36.6 bits (83), Expect = 0.17
Identities = 15/32 (46%), Positives = 19/32 (58%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C +G G P Y + KAIES N+D + L YW
Sbjct: 59 CNLIGFGYPAYISMKAIESPNKDDDTQWLTYW 90
>ref|NP_473279.1| conserved protein, putative [Plasmodium falciparum 3D7]
gi|3758859|emb|CAB11144.1| conserved protein, putative
[Plasmodium falciparum 3D7] gi|7494244|pir||T18505
hypothetical protein C0730w - malaria parasite
(Plasmodium falciparum)
Length = 221
Score = 35.8 bits (81), Expect = 0.29
Identities = 14/32 (43%), Positives = 20/32 (61%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C VG P Y +FKA+ES+++D + L YW
Sbjct: 93 CNVVGFAYPAYQSFKAVESQSRDETKLWLTYW 124
>gb|AAT70688.1| receptor expression enhancing protein 5 [Homo sapiens]
Length = 189
Score = 35.0 bits (79), Expect = 0.49
Identities = 14/32 (43%), Positives = 19/32 (58%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C +G G P Y + KAIES N++ + L YW
Sbjct: 59 CNLIGFGYPAYISIKAIESPNKEDDTQWLTYW 90
>gb|AAA60136.1| polyposis locus-encoded protein
Length = 185
Score = 35.0 bits (79), Expect = 0.49
Identities = 14/32 (43%), Positives = 19/32 (58%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C +G G P Y + KAIES N++ + L YW
Sbjct: 55 CNLIGFGYPAYISIKAIESPNKEDDTQWLTYW 86
>gb|AAH65926.1| Chromosome 5 open reading frame 18 [Homo sapiens]
gi|23830945|sp|Q00765|DP1_HUMAN Polyposis locus protein
1 (TB2 protein) gi|33667051|ref|NP_005660.3| deleted in
polyposis 1 [Homo sapiens]
Length = 185
Score = 35.0 bits (79), Expect = 0.49
Identities = 14/32 (43%), Positives = 19/32 (58%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C +G G P Y + KAIES N++ + L YW
Sbjct: 55 CNLIGFGYPAYISIKAIESPNKEDDTQWLTYW 86
>ref|XP_536283.1| PREDICTED: similar to TB2 [Canis familiaris]
Length = 504
Score = 35.0 bits (79), Expect = 0.49
Identities = 14/32 (43%), Positives = 19/32 (58%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C +G G P Y + KAIES N++ + L YW
Sbjct: 374 CNLIGFGYPAYVSIKAIESPNKEDDTQWLTYW 405
>ref|XP_517877.1| PREDICTED: similar to TB2 [Pan troglodytes]
Length = 492
Score = 35.0 bits (79), Expect = 0.49
Identities = 14/32 (43%), Positives = 19/32 (58%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C +G G P Y + KAIES N++ + L YW
Sbjct: 100 CNLIGFGYPAYISIKAIESPNKEDDTQWLTYW 131
>emb|CAH89974.1| hypothetical protein [Pongo pygmaeus]
Length = 189
Score = 35.0 bits (79), Expect = 0.49
Identities = 14/32 (43%), Positives = 19/32 (58%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C +G G P Y + KAIES N++ + L YW
Sbjct: 59 CNLIGFGYPAYISIKAIESPNKEDDTQWLTYW 90
>gb|AAA66351.1| TB2
Length = 197
Score = 35.0 bits (79), Expect = 0.49
Identities = 14/32 (43%), Positives = 19/32 (58%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C +G G P Y + KAIES N++ + L YW
Sbjct: 67 CNLIGFGYPAYISIKAIESPNKEDDTQWLTYW 98
>ref|NP_499990.1| polyposis locus protein 1 (22.8 kD) (4B543) [Caenorhabditis
elegans] gi|25395975|pir||G88632 protein F56B3.6
[imported] - Caenorhabditis elegans
gi|13559618|gb|AAK29829.1| Hypothetical protein F56B3.6
[Caenorhabditis elegans]
Length = 205
Score = 33.9 bits (76), Expect = 1.1
Identities = 15/37 (40%), Positives = 19/37 (50%)
Query: 28 VIRTACCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
V R C +G G P Y++ KAI S D L+YW
Sbjct: 99 VARLLCNLIGFGYPTYASVKAIRSPGGDDDTVWLIYW 135
>ref|XP_543255.1| PREDICTED: similar to RIKEN cDNA 2700029E10 [Canis familiaris]
Length = 535
Score = 33.5 bits (75), Expect = 1.4
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 1 MALPLIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRC 60
+ +P+ + V + L+ CP +TA G+ P Y+++KA+++KN R
Sbjct: 212 VVIPICNLAVPGLVAVDLMACPQE-----QTAWLVFGMLYPAYASYKAVKTKNIREYVRW 266
Query: 61 LVYW 64
++YW
Sbjct: 267 MMYW 270
>gb|AAH90826.1| Zgc:101744 [Danio rerio] gi|61806644|ref|NP_001013554.1|
hypothetical protein LOC541409 [Danio rerio]
Length = 184
Score = 33.1 bits (74), Expect = 1.9
Identities = 13/32 (40%), Positives = 19/32 (58%)
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C +G P Y++ KAIES N++ + L YW
Sbjct: 59 CNLIGFIYPAYASIKAIESNNKEDDTKWLTYW 90
>ref|XP_519644.1| PREDICTED: similar to hairless protein isoform a; hairless (mouse)
homolog [Pan troglodytes]
Length = 2991
Score = 33.1 bits (74), Expect = 1.9
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 15 GLRLLLCPLGSHVVI-----RTACCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
G R L PLG H VI + G+ P Y+++KA+++KN R ++YW
Sbjct: 618 GHRPTLLPLGKHKVIWHVVGGESRLVFGMLCPAYASYKAVKTKNIREYVRWMMYW 672
>gb|AAF36016.1| Hypothetical protein Y71F9B.3 [Caenorhabditis elegans]
gi|17510509|ref|NP_491033.1| polyposis locus protein 1
(20.6 kD) (1D299) [Caenorhabditis elegans]
Length = 183
Score = 33.1 bits (74), Expect = 1.9
Identities = 18/51 (35%), Positives = 25/51 (48%), Gaps = 2/51 (3%)
Query: 14 VGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
VGL+ L G + C +G P Y + KAIES N++ + L YW
Sbjct: 47 VGLQALYLIFGHSAQL--VCNFMGFVYPAYMSIKAIESSNKEDDTQWLTYW 95
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.141 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,899,919
Number of Sequences: 2540612
Number of extensions: 4417349
Number of successful extensions: 8390
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8355
Number of HSP's gapped (non-prelim): 39
length of query: 79
length of database: 863,360,394
effective HSP length: 55
effective length of query: 24
effective length of database: 723,626,734
effective search space: 17367041616
effective search space used: 17367041616
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC147178.1