BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147002.8 + phase: 0 /pseudo
(1664 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_468615.1| putative copia-type pol polyprotein [Oryza sati... 133 6e-29
gb|AAT85130.1| putative polyprotein [Oryza sativa (japonica cult... 132 8e-29
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 129 8e-28
gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678... 127 3e-27
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 127 4e-27
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 127 4e-27
gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza s... 126 5e-27
ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa] gi|... 126 5e-27
ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sati... 126 7e-27
dbj|BAB11308.1| copia-like retroelement pol polyprotein [Arabido... 126 7e-27
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana] 126 7e-27
gb|AAX92911.1| retrotransposon protein, putative, unclassified [... 123 5e-26
emb|CAE02142.1| OSJNBa0069D17.3 [Oryza sativa (japonica cultivar... 121 2e-25
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 121 2e-25
gb|AAX96502.1| Transposable element protein, putative [Oryza sat... 121 2e-25
gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cul... 120 3e-25
gb|AAK92658.1| Putative retroelement [Oryza sativa] 120 3e-25
gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cult... 120 3e-25
gb|AAP53715.1| contains similarity to Zea mays retrotransposon O... 120 4e-25
emb|CAE05272.1| OSJNBb0014D23.6 [Oryza sativa (japonica cultivar... 120 4e-25
>ref|XP_468615.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|30017555|gb|AAP12977.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1896
Score = 133 bits (334), Expect = 6e-29
Identities = 125/487 (25%), Positives = 217/487 (43%), Gaps = 51/487 (10%)
Query: 1 WKTNMYSFIMGLDEELWDILEDGVD----DLDLDEEGAAIDRKIHTPAQKKLYKKHHKIR 56
WK M I+ L +W ++ G+D D++L E Q++L ++ ++
Sbjct: 62 WKHKMKLHIISLHPSIWKVVCTGIDVPHDDMELTSE------------QEQLIHRNDQVS 109
Query: 57 GIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDES 116
I++++ E+ K+ AKA++ +L EGS V+EAK +L + F M D E+
Sbjct: 110 NAILSALSPEEFNKVDRLEEAKAIWDTLQLAHEGSPAVREAKIELLEGRLGRFVMDDKET 169
Query: 117 IEEMYSRFQTLVSGLQILKKSYVSSDHVSK-ILRSLPSRWRPKVTAIEEAKDLNTLSVED 175
+EMY R LV+ ++ L +++ V K +LR+ R V+ I E KD L+ D
Sbjct: 170 PQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRAFGPRNPTLVSMIHERKDFKRLTPSD 229
Query: 176 LVSSLKVHEMSLNE-HETSKKSKSIALPSKGKTSKSSKAYKASESVEESPDGDSDEDQSV 234
++ + HEM E E + K+ A+ A KA + E S + DE+
Sbjct: 230 ILGRIVSHEMQEEEAREVRQMVKNAAM-----IKNQEVALKAKQEEESSCEESKDEE--- 281
Query: 235 KMAMLSNKLEYLARKQKKFLSKRGSYKNFKKEDQKGCFNCKKPGHFIADCPDLQKEKFKG 294
MA++ + ++ R+ ++ K K++ ++ CFNC + GHFIADCP + K KG
Sbjct: 282 -MALIVKRFKHFLRRSGYGKERKDDDKG-KRQSKRACFNCGEYGHFIADCPKTNEAKGKG 339
Query: 295 KSKKSSFNSSKFRKQIKKSLMA-TWEDLDSESGSDKEEADDDAKAAVGLVATVSSEAVSE 353
KK + ++ MA W D E K + + + V VA SS + E
Sbjct: 340 GKKKPEC------AHVAEAHMAEVWYSEDEEDPKPKPKDKVEGEGGVATVAFKSSSSSKE 393
Query: 354 A--------ESDSEDENEVYS-------KIPRQELVDSLKELLSLFEHRTNELTDLKEKY 398
SD D++ YS K+ Q+L + S E NEL D+ + +
Sbjct: 394 RLFMAQGHNLSDDNDDSYHYSCFMAQGRKVMTQKLSHTSLNDDSSDEESDNELDDVLKSF 453
Query: 399 VDLMKQQKSTLLE-LKASEEELKGFNLISATYEDRLKSLCQKLQEKCDKGSGNKHEIALD 457
Q + L+ L + E+ L+ + + R +L + L ++C K +++ L
Sbjct: 454 SKPAMQHLAKLMRALDSKEQSLERQEELLILEKKRNLALEESLAKECAKNEQLANDLNLA 513
Query: 458 DFIMAGI 464
+ +A +
Sbjct: 514 NGSLASL 520
>gb|AAT85130.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1362
Score = 132 bits (333), Expect = 8e-29
Identities = 131/494 (26%), Positives = 221/494 (44%), Gaps = 65/494 (13%)
Query: 1 WKTNMYSFIMGLDEELWDILEDGVD----DLDLDEEGAAIDRKIHTPAQKKLYKKHHKIR 56
WK M ++ L +W ++ GVD D++L E Q++L ++ +
Sbjct: 63 WKHKMKLHLISLHPSIWKVVCTGVDVPHDDMELTSE------------QEQLIHRNAQAS 110
Query: 57 GIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDES 116
I++++ E+ K+ AK ++ +L EGS V+EAK +L + F M D E+
Sbjct: 111 NAILSALSPEEFNKVDGLEEAKEIWDTLQLAHEGSPAVREAKIELLEGRLGRFVMGDKET 170
Query: 117 IEEMYSRFQTLVSGLQILKKSYVSSDHVSK-ILRSLPSRWRPKVTAIEEAKDLNTLSVED 175
+EMY R LV+ ++ L +++ V K +LR+ R V+ I E KD L+ D
Sbjct: 171 PQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRAFGPRNPTLVSMIRERKDFKRLTPSD 230
Query: 176 LVSSLKVHEMSLNE-HETSKKSKSIALPSKGKTSKSSKAYKASESVEESPDGDSDEDQSV 234
++ + HEM E E + K+ A+ A KA + E S + DE+
Sbjct: 231 ILGRIVSHEMQEEEAREVRQMVKNAAM-----IKNQEIALKAKQEEESSCEESEDEE--- 282
Query: 235 KMAMLSNKLEYLARKQKKFLSKRGSYKNFKKEDQKG-------CFNCKKPGHFIADCPDL 287
+ ++ ++ K FL K G Y +K+D KG CFNC + GHFIADCP
Sbjct: 283 --------MAFIVKRFKHFLRKSG-YGKGRKDDDKGKRQSKRACFNCGEYGHFIADCPKS 333
Query: 288 QKEKFKGKSKKSSFNSSKFRKQIKKSLMA-TWEDLDSESGSDK-EEADDDAKAAVGLVAT 345
+ K KG KK R + ++ MA W D E K + D G VAT
Sbjct: 334 NEAKAKGGKKKPE------RAHVAEAHMAEVWYSRDEEDPEVKPKPKPKDKVEGEGGVAT 387
Query: 346 VSSEAVSEAE-------SDSEDENEVYS-------KIPRQELVDSLKELLSLFEHRTNEL 391
V+ ++ S ++ SD +D++ YS K+ Q+ + ++ S E NEL
Sbjct: 388 VAFKSSSSSKERLFNNLSDDDDDSYHYSCFMAQGRKVMTQKPSHTSLDVDSSDEESDNEL 447
Query: 392 TDLKEKYVDLMKQQKSTLLE-LKASEEELKGFNLISATYEDRLKSLCQKLQEKCDKGSGN 450
D+ + + Q + L+ L + E+ L+ + + R +L + L ++C K
Sbjct: 448 DDVLKSFSKPAMQHLAKLMRALYSKEQSLERQEELLILEKKRNLALEESLAKECAKNEQL 507
Query: 451 KHEIALDDFIMAGI 464
+E+ L + +A +
Sbjct: 508 ANELNLANGSLASL 521
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 129 bits (324), Expect = 8e-28
Identities = 125/478 (26%), Positives = 207/478 (43%), Gaps = 78/478 (16%)
Query: 1 WKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----KIHTPAQKKLYKKHHKI 55
WK M +F+ LD W + G + LD EG D + T + +L + K
Sbjct: 24 WKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKA 83
Query: 56 RGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDE 115
+ + + + ++ + AK L + EG+ KVK ++ +L ++E +MK++E
Sbjct: 84 LNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMSRLQLLATKFENLKMKEEE 143
Query: 116 SIEEMYSRFQTLVSGLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVED 175
I + + + + L + V KILRSLP R+ KVTAIEEA+D+ + V++
Sbjct: 144 CIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDE 203
Query: 176 LVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESVEESPDGDSDEDQSVK 235
L+ SL+ E+ L++ KKSK++A S E E+ D D+DE +
Sbjct: 204 LIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLDTDEGLTNA 250
Query: 236 MAMLSNK----LEYLARKQKKFL----------SKRGSYKNFKKEDQKG--CFNCKKPGH 279
+ +L + L + ++QK + SK + K KG C C+ GH
Sbjct: 251 VVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGH 310
Query: 280 FIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAA 339
IA+CP K+ KG S S D +SE SD +D D A
Sbjct: 311 IIAECPTHLKKHRKGLSVCQS-------------------DTESEQESD---SDRDVNAL 348
Query: 340 VGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYV 399
+G+ T +ED ++ S+I EL S ++L E + LK+
Sbjct: 349 IGIFET------------AEDSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIA 396
Query: 400 DLMKQQKSTLLELKASEEELKG-FNLISATYEDRLKSLCQKLQEKCDKGSGNKHEIAL 456
DL ++++ E+ ELKG +++ E+ KS+ + +KGS E+ L
Sbjct: 397 DLEAEKEAHKEEI----SELKGEVGFLNSKLENMTKSI-----KMLNKGSDTLDEVLL 445
>gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678|pir||T06419
gag-proteinase polyprotein - soybean retrovirus-like
element
Length = 640
Score = 127 bits (319), Expect = 3e-27
Identities = 126/477 (26%), Positives = 210/477 (43%), Gaps = 79/477 (16%)
Query: 1 WKTNMYSFIMGLDEELWD-ILEDGVDDLDLDEEGAAID----RKIHTPAQKKLYKKHHKI 55
WK M +F+ LD W +++D LD EG D + T + +L + K
Sbjct: 24 WKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDELALGNSKA 83
Query: 56 RGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDE 115
+ + + + ++ + AK + L EG+ KVK ++ +L ++E +MK++E
Sbjct: 84 LNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEE 143
Query: 116 SIEEMYSRFQTLVSGLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVED 175
I + + + + L + V KILRSLP R+ KVTAIEEA+D+ L V++
Sbjct: 144 CIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNLRVDE 203
Query: 176 LVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESVEESPDGDSDEDQSVK 235
L+ SL+ E+ L++ T KKSK++A S E E+ D D+DE +
Sbjct: 204 LIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDTDEGLTNA 250
Query: 236 MAMLSNK----LEYLARKQK------KFLSKRGSYKNFKKEDQK-------GCFNCKKPG 278
+ +L + L + R+QK F ++GS + K+ D+K C C+ G
Sbjct: 251 VVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGS-EYQKRSDEKPSHSKGFQCHGCEGYG 309
Query: 279 HFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKA 338
H A+CP K++ KG S S +D +SE SD +D D A
Sbjct: 310 HIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESD---SDRDVNA 348
Query: 339 AVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKY 398
G +ED ++ S+I EL S +EL E + LK+
Sbjct: 349 LTGRF------------ESAEDSSDTDSEITFDELATSYRELCIKSEKILQQEAQLKKVI 396
Query: 399 VDLMKQQKSTLLELKASEEELKG-FNLISATYEDRLKSLCQKLQEKCDKGSGNKHEI 454
+L ++++ E+ ELKG +++ E+ KS+ + +KGS E+
Sbjct: 397 ANLEAEKEAHEEEI----SELKGEVGFLNSKLENMTKSI-----KMLNKGSDMLDEV 444
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 127 bits (318), Expect = 4e-27
Identities = 125/478 (26%), Positives = 205/478 (42%), Gaps = 78/478 (16%)
Query: 1 WKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----KIHTPAQKKLYKKHHKI 55
WK M +F+ LD W + G + LD EG D + T + +L + K
Sbjct: 24 WKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKA 83
Query: 56 RGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDE 115
+ + + + ++ + AK + L EG+ KVK ++ +L ++E +MK++E
Sbjct: 84 LNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEE 143
Query: 116 SIEEMYSRFQTLVSGLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVED 175
I + + + + L + V KILRSLP R+ KVTAIEEA+D+ + V++
Sbjct: 144 CIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDE 203
Query: 176 LVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESVEESPDGDSDEDQSVK 235
L+ SL+ E+ L++ KKSK++A S E E+ D D+DE +
Sbjct: 204 LIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLDTDEGLTNA 250
Query: 236 MAMLSNK----LEYLARKQKKFL----------SKRGSYKNFKKEDQKG--CFNCKKPGH 279
+ +L + L + ++QK + SK + K KG C C+ GH
Sbjct: 251 VVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGH 310
Query: 280 FIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAA 339
IA+CP K+ KG S S D +SE SD +D D A
Sbjct: 311 IIAECPTHLKKHRKGLSVCQS-------------------DTESEQESD---SDRDVNAL 348
Query: 340 VGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYV 399
G+ T +ED ++ S+I EL S ++L E + LK+
Sbjct: 349 TGIFET------------AEDSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIA 396
Query: 400 DLMKQQKSTLLELKASEEELKG-FNLISATYEDRLKSLCQKLQEKCDKGSGNKHEIAL 456
DL ++++ E+ ELKG +++ E KS+ + +KGS E+ L
Sbjct: 397 DLEAEKEAHEEEI----SELKGEVGFLNSKLETMKKSI-----KMLNKGSDTLDEVLL 445
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 127 bits (318), Expect = 4e-27
Identities = 125/478 (26%), Positives = 206/478 (42%), Gaps = 78/478 (16%)
Query: 1 WKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----KIHTPAQKKLYKKHHKI 55
WK M +F+ LD W + G + LD EG D + T + +L + K
Sbjct: 24 WKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKA 83
Query: 56 RGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDE 115
+ + + + ++ + AK + L EG+ KVK ++ +L ++E +MK++E
Sbjct: 84 LNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLATKFENLKMKEEE 143
Query: 116 SIEEMYSRFQTLVSGLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVED 175
I + + + + L + V KILRSLP R+ KVTAIEEA+D+ + V++
Sbjct: 144 CIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDE 203
Query: 176 LVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESVEESPDGDSDEDQSVK 235
L+ SL+ E+ L++ KKSK++A S E E+ D ++DE +
Sbjct: 204 LIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLNTDEGLTNA 250
Query: 236 MAMLSNK----LEYLARKQKKFLSK-----RGSYKNFKKEDQK-------GCFNCKKPGH 279
+ +L + L + ++QK + R K KK D K C C+ GH
Sbjct: 251 VVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKKSDVKPSHSKGIQCHGCEGYGH 310
Query: 280 FIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAA 339
IA+CP K+ KG S S D +SE SD +D D A
Sbjct: 311 IIAECPTHLKKHRKGLSVCQS-------------------DTESEQESD---SDRDVNAL 348
Query: 340 VGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYV 399
G+ T +ED ++ S+I EL S ++L E + LK+
Sbjct: 349 TGIFET------------AEDSSDTDSEITFDELATSYRKLCIKSEKILQQEAQLKKVIA 396
Query: 400 DLMKQQKSTLLELKASEEELKG-FNLISATYEDRLKSLCQKLQEKCDKGSGNKHEIAL 456
DL ++++ E+ ELKG +++ E+ KS+ + +KGS E+ L
Sbjct: 397 DLEAEKEAHKEEI----SELKGEVGFLNSKLENMTKSI-----KMLNKGSDTLDEVLL 445
>gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza sativa]
Length = 1074
Score = 126 bits (317), Expect = 5e-27
Identities = 123/455 (27%), Positives = 202/455 (44%), Gaps = 49/455 (10%)
Query: 1 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQKKLYKKHHKIRGIIV 60
WK M + ++ +W I+E G ++ D H AQ +I+
Sbjct: 47 WKHKMKMHLKSINPSIWRIVEKGYVLQKPEDPTKEDDENEHKNAQAA---------NVIL 97
Query: 61 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 120
+++ +E+ ++ D +AK ++ +L EG+ V+E+K +L Q+E F M D ES +M
Sbjct: 98 SALSGSEFNRVDDIESAKVIWDTLRNLHEGTDSVRESKVEILKGQFERFVMLDGESPSDM 157
Query: 121 YSRFQTLVSGLQIL-KKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSS 179
Y +V+ ++ L K V K++R++ R VT I E D TL+ DL+
Sbjct: 158 YDHLSKIVNEIKGLGSKDMTDEVVVKKMVRAITLRNSTLVTIIRERPDYKTLTPHDLLGR 217
Query: 180 LKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESVEESPDGDSDED-QSVKMAM 238
+ H+M + E+ + + I S K A KA E EES S E+ +M +
Sbjct: 218 ILAHDMLV--QESKEVIQYINQSSTTSIKKEDLALKAKEEEEESRKSKSKEEIDDEEMTL 275
Query: 239 LSNKLEYLARKQ---KKFLSKRGSYKNFKKEDQKGCFNCKKPGHFIADCPDLQ-----KE 290
K R+ K SK S K + + C+ CK+PGHFIADCP L+ KE
Sbjct: 276 FVKKFGKFMRRSGFFKGSSSKHHSNKLSGRHSARVCYVCKEPGHFIADCPYLKDGSHIKE 335
Query: 291 KFKG--KSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEA---------------- 332
G K +K + R++ ++ + DSES S EE
Sbjct: 336 DKMGEKKDEKKEKHKHSKRERYGQAHLGKIFGSDSESSSSDEEGIATFAVKPSSPPRLFN 395
Query: 333 -DDDAKAAVGLVA----TVSSEAVSEAESDSEDENEVYSKIPRQELVDSL-KELLSLFEH 386
D A + L+A SS + S++E++V ++ +EL S+ KE L H
Sbjct: 396 YSSDEDAPICLMAKEPKVPSSLKSFNVDLVSDEEDDVEDEVMDEELFKSITKESL---PH 452
Query: 387 RTNELTDLKEKYVDLMKQQKSTLLELKASEEELKG 421
+ L ++++Y L ++Q++ L+ K ELKG
Sbjct: 453 LSELLGRIEDQYATL-ERQEALLIREKERSHELKG 486
>ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa]
gi|13937301|gb|AAK50132.1| putative gag-pol polyprotein
[Oryza sativa]
Length = 1700
Score = 126 bits (317), Expect = 5e-27
Identities = 118/470 (25%), Positives = 208/470 (44%), Gaps = 72/470 (15%)
Query: 1 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQKKLYKKHHKIRGIIV 60
WK M + + + +W I++ G AI T + + + + +
Sbjct: 22 WKIKMSTHLKAMSFHIWSIVDVGF----------AITGTPLTEIDHRNLQLNAQAMNALF 71
Query: 61 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 120
S+ + E+ ++S+ TA ++ L EG+ + K+AK L QYE F M ES+ +M
Sbjct: 72 NSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSMLPHESVNDM 131
Query: 121 YSRFQTLVSGLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 180
Y R +V+ L+ L +Y + K+LR+LP ++ VT + + D++ ++ L+ +
Sbjct: 132 YGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETFVTMLINS-DMSRMTPASLLGKI 190
Query: 181 KVHEM----SLNEHETSKKSKSIALPSKGKTSKSSKAYKASESVEESPDGDSDEDQSVKM 236
++M E S K IAL ++ + SK + +E +EE +M
Sbjct: 191 NTNDMYKLKKKEIEEASPSKKCIALQAEVEDQSKSKVNEVNEDLEE------------EM 238
Query: 237 AMLSNKLEYLARKQKKFLSKRGSYKNFKKEDQKG-------CFNCKKPGHFIADCPDLQK 289
+L+ + L ++K+ RGS N +K + CF C + GHF + CP
Sbjct: 239 VLLARRFNDLLGRRKE--RGRGSNSNRRKNRRPNKTLSNLRCFECGEKGHFASKCPSKDD 296
Query: 290 EKFKGKSKKSSFNSSKFRKQIKK------SLMATW---EDLDSESGSDKEEADDDAK--- 337
+ K KKS K K++KK + + W E+ + SGS++E DD +
Sbjct: 297 DGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEEEGGDDASSKKK 354
Query: 338 --------------AAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSL 383
A + L+A SS+ S ++S+S+D+ + + ELV +EL +
Sbjct: 355 KMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYDELVSMFEELHTY 411
Query: 384 FEHRTNELTDLKEKYVD---LMKQQKSTLLELKASEEELKGF--NLISAT 428
E + LK+ + L ++ K+T L S E+LK NL+S T
Sbjct: 412 SEKEIVKFKALKKDHASLEVLYEELKTTHERLTISHEKLKEAHDNLLSTT 461
Score = 43.9 bits (102), Expect = 0.047
Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 55/258 (21%)
Query: 77 AKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEMYSRFQTL-------VS 129
A ++FA LC +GS KV + E DD S +E+ S F+ L +
Sbjct: 364 APSLFAPLCLMAKGSSKVTS------LSDSESDDDCDDVSYDELVSMFEELHTYSEKEIV 417
Query: 130 GLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVE------DLVSSLKVH 183
+ LKK + S + + + L++ R ++EA D N LS D+ S +
Sbjct: 418 KFKALKKDHASLEVLYEELKTTHERLTISHEKLKEAHD-NLLSTTQHGAHIDVDISCDLL 476
Query: 184 EMSLNEHETSKKSKSIA--------LPSKGKTSKS-----------------SKAYKASE 218
+ S H S SI+ +PS +S S + K ++
Sbjct: 477 DDSATCHIAHVASSSISTSCDNLMDMPSPCSSSSSCVSICDASLVVENNELKEQVSKLNK 536
Query: 219 SVEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKN-----FKKEDQKGCFN 273
S+E G + D+ +LS + L ++ F+ K+G + F K + K C
Sbjct: 537 SLERCFKGKNTLDK-----ILSEQRCILNKEGLGFIPKKGKKPSHHATRFVKRNGKYCSK 591
Query: 274 CKKPGHFIADCPDLQKEK 291
C++ GH ++DCP + K
Sbjct: 592 CREVGHLVSDCPGSKPPK 609
>ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|29126367|gb|AAO66559.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2027
Score = 126 bits (316), Expect = 7e-27
Identities = 120/451 (26%), Positives = 198/451 (43%), Gaps = 47/451 (10%)
Query: 1 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQKKLYKKHHKIRGIIV 60
WK M + ++ +W I+E G + + D H AQ I+
Sbjct: 47 WKHKMKMHLKSINPSIWRIVEKGYVLQNPENPTKEDDENEHKNAQAA---------NAIL 97
Query: 61 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 120
+++ +E+ ++ D +AK ++ +L EG+ V+E+K +L Q+E F M D ES +M
Sbjct: 98 SALSGSEFNRVDDIESAKVIWDTLRNLHEGTDSVRESKVEILKGQFERFIMLDGESPSDM 157
Query: 121 YSRFQTLVSGLQIL-KKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSS 179
Y R +V+ ++ L K V K++R++ R VT I E D TL+ DL+
Sbjct: 158 YDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIRERPDYKTLTPHDLLGR 217
Query: 180 LKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESVEESPDGDSD-EDQSVKMAM 238
+ H+M + E+ + I S K A KA E EE+ S E +MA+
Sbjct: 218 ILAHDMLV--QESKDVIQYINQSSTTNIKKEDLALKAKEEEEENRKSKSKAEIDDEEMAL 275
Query: 239 LSNKLEYLARKQKKF---LSKRGSYKNFKKEDQKGCFNCKKPGHFIADCPDL------QK 289
K R+ F SK S K+ + + C+ CK+PGHFIADCP L ++
Sbjct: 276 FVKKFGKFMRRSGFFKGGSSKHYSNKSSGRHSARMCYVCKEPGHFIADCPHLKDGSHIKE 335
Query: 290 EKFKGKSKKSSFNSSKFRK--QIKKSLMATWEDLDSESGSDKEEA--------------- 332
+K KG+ K K+ K ++ + DSES S EE
Sbjct: 336 DKKKGEKKDEKKEKHKYSKWEHYGQAHLGMIFGSDSESSSSDEEGVATFAVKPSSPPRLF 395
Query: 333 --DDDAKAAVGLVA---TVSSEAVS-EAESDSEDENEVYSKIPRQELVDSLKELLSLFEH 386
D A + L+A V S S + S++E+EV ++ EL+ S+ + H
Sbjct: 396 DYSSDEDAPICLMAKEPKVPSPLKSFNVDFVSDEEDEVEDEVMDDELLKSITK--ESIPH 453
Query: 387 RTNELTDLKEKYVDLMKQQKSTLLELKASEE 417
+ L ++++Y L +Q++ + E + S E
Sbjct: 454 LSELLGRIEDQYATLERQEELLIHEKEQSHE 484
>dbj|BAB11308.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1013
Score = 126 bits (316), Expect = 7e-27
Identities = 120/483 (24%), Positives = 204/483 (41%), Gaps = 42/483 (8%)
Query: 1 WKTNMYSFIMGLDEELWDIL-----------EDGVDDLDLDEEGAAIDRKIHTPAQKKLY 49
WK M + I GL +E W E+G D L +++ T A++
Sbjct: 24 WKVKMRALIRGLGKEAWIATSVGWKAPVVKGENGEDVLKTEDQW--------TDAEEAKA 75
Query: 50 KKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELF 109
+ + +I S+ + ++ ++ + +AK + L +EG+ VK ++ ML Q+E
Sbjct: 76 TANSRALSLIFNSVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENL 135
Query: 110 RMKDDESIEEMYSRFQTLVSGLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDLN 169
M + E+IEE + + S L K Y V K+LR LPSR+ K TA+ + D +
Sbjct: 136 TMDESENIEEFSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTD 195
Query: 170 TLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASE--SVEESPDGD 227
T+ E++V L+ +E+ + KG SK +SE ++E D
Sbjct: 196 TIDFEEVVGMLQAYELEITS-------------GKGGYSKGVALAVSSEKNEIQELKDSM 242
Query: 228 SDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNFKKEDQKGCFNCKKPGHFIADCPDL 287
S ++ AM + AR Q + K + C C+ GH A+CP L
Sbjct: 243 SMMAKNFSRAMKRVEKRGFARNQGSDRDRDRDRDRNSKRSEIQCHECQGYGHIKAECPSL 302
Query: 288 QKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAVGLVATVS 347
+++ K S+ +KF KS +S+S SD E++++D K V V +
Sbjct: 303 KRKDLK-CSECRGIGHTKFDCIGSKSKPDRSYIAESDSDSDDEDSEEDVKGFVSFVGIIE 361
Query: 348 SEAVSEAESDSE---DENEVYSKIPRQELVDSLKELLSLFEH---RTNELTDLKEKYVDL 401
+ VS SDSE ++ E+ + +D E L+E+ + E E+ V +
Sbjct: 362 DDNVSSDSSDSEVGCEKEEISADDESDVEMDVDGEFRKLYENWLVLSKEKVIWLEEKVKV 421
Query: 402 MKQQKSTLLELKASEEELKGFNLISATYEDRLKSLCQKLQEKCDK-GSGNKHEIALDDFI 460
+Q + EL + + L + E++ + L Q L + K NK LD +
Sbjct: 422 QEQIEQLKGELAVANQIKSEMILKYSAKEEKNRELSQDLSDTRKKIHMLNKGTKDLDSIL 481
Query: 461 MAG 463
AG
Sbjct: 482 AAG 484
>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
Length = 1643
Score = 126 bits (316), Expect = 7e-27
Identities = 120/483 (24%), Positives = 204/483 (41%), Gaps = 42/483 (8%)
Query: 1 WKTNMYSFIMGLDEELWDIL-----------EDGVDDLDLDEEGAAIDRKIHTPAQKKLY 49
WK M + I GL +E W E+G D L +++ T A++
Sbjct: 24 WKVKMRALIRGLGKEAWIATSVGWKAPVVKGENGEDVLKTEDQW--------TDAEEAKA 75
Query: 50 KKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELF 109
+ + +I S+ + ++ ++ + +AK + L +EG+ VK ++ ML Q+E
Sbjct: 76 TANSRALSLIFNSVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENL 135
Query: 110 RMKDDESIEEMYSRFQTLVSGLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDLN 169
M + E+IEE + + S L K Y V K+LR LPSR+ K TA+ + D +
Sbjct: 136 TMDESENIEEFSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTD 195
Query: 170 TLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASE--SVEESPDGD 227
T+ E++V L+ +E+ + KG SK +SE ++E D
Sbjct: 196 TIDFEEVVGMLQAYELEITS-------------GKGGYSKGVALAVSSEKNEIQELKDSM 242
Query: 228 SDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNFKKEDQKGCFNCKKPGHFIADCPDL 287
S ++ AM + AR Q + K + C C+ GH A+CP L
Sbjct: 243 SMMAKNFSRAMKRVEKRGFARNQGSDRDRDRDRDRNSKRSEIQCHECQGYGHIKAECPSL 302
Query: 288 QKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAVGLVATVS 347
+++ K S+ +KF KS +S+S SD E++++D K V V +
Sbjct: 303 KRKDLK-CSECRGIGHTKFDCIGSKSKPDRSYIAESDSDSDDEDSEEDVKGFVSFVGIIE 361
Query: 348 SEAVSEAESDSE---DENEVYSKIPRQELVDSLKELLSLFEH---RTNELTDLKEKYVDL 401
+ VS SDSE ++ E+ + +D E L+E+ + E E+ V +
Sbjct: 362 DDNVSSDSSDSEVGCEKEEISADDESDVEMDVDGEFRKLYENWLVLSKEKVIWLEEKVKV 421
Query: 402 MKQQKSTLLELKASEEELKGFNLISATYEDRLKSLCQKLQEKCDK-GSGNKHEIALDDFI 460
+Q + EL + + L + E++ + L Q L + K NK LD +
Sbjct: 422 QEQIEQLKGELAVANQIKSEMILKYSAKEEKNRELSQDLSDTRKKIHMLNKGTKDLDSIL 481
Query: 461 MAG 463
AG
Sbjct: 482 AAG 484
>gb|AAX92911.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1323
Score = 123 bits (309), Expect = 5e-26
Identities = 100/418 (23%), Positives = 188/418 (44%), Gaps = 39/418 (9%)
Query: 1 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQKKLYKKHHKIRGIIV 60
W + M S+IM D ++W + I I+T A+K +++ K R I++
Sbjct: 22 WCSRMQSYIMAEDYDIWRKVSHPY----------VIPEAINTAAEKTAFEQICKARNILL 71
Query: 61 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 120
+ I R+ Y +++ TA ++ +L +G+ +KE + +Y F MK E++++
Sbjct: 72 SGISRSGYDRVAHLQTAHEIWVALSNFHQGTNNIKELHRDLFKTEYIKFEMKPGEALDDY 131
Query: 121 YSRFQTLVSGLQILKKSYVSSDHVSKILRSL-----PSRWRPKVTAIEEAKDLNTLSVED 175
SRF ++S L+ + SY ++ S+I R S W KVT+I+E+ +++TL+++
Sbjct: 132 LSRFNKILSDLRFVDSSYDANYPESEISRHFLNGLDMSIWEMKVTSIQESVNMSTLTLDS 191
Query: 176 LVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESVEESPDGDSDEDQSVK 235
L + LK HEM++ + KS ++ + S + + K S V + D +Q +
Sbjct: 192 LYTKLKTHEMNVLSRKADSKSSAL-VSSSSSLDVDASSSKPSFIVVFNATSDDQLEQIEE 250
Query: 236 MAMLSNKLEYLARKQKKFLSKRGSYKNFKKEDQKGCFNCKKPGHFIADCPDLQKEKFKGK 295
E LA + + +N K+ CF C H + CP L + K K K
Sbjct: 251 --------EDLALDANRIARAMNNARNRKRGGPNRCFECGSIDHLRSHCPKLGRGKRKDK 302
Query: 296 --------SKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAVGLVATVS 347
K S + KF++ ++++ + + S D E DDD + V
Sbjct: 303 DGEKTNNNKLKGSSQARKFKENLRRAFDQVYAVFEPSSDVDGESGDDDKGKNISGVC--- 359
Query: 348 SEAVSEAESDSEDENEVYSKIPRQE--LVDSLKELLSLFEHRTNELTDLKEKYVDLMK 403
++ ES+ E E+ K+ R++ +++SLK + + D +V+ M+
Sbjct: 360 --FMARGESNIEYEDHECEKMYRKQEFIIESLKSEIDRLKSLIPNDDDCSNCHVEYME 415
>emb|CAE02142.1| OSJNBa0069D17.3 [Oryza sativa (japonica cultivar-group)]
gi|50923625|ref|XP_472173.1| OSJNBa0069D17.3 [Oryza
sativa (japonica cultivar-group)]
Length = 1156
Score = 121 bits (304), Expect = 2e-25
Identities = 121/448 (27%), Positives = 202/448 (45%), Gaps = 47/448 (10%)
Query: 42 TPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALM 101
T Q++L ++ + I++++ E+ K+ AK ++ +L EGS V+EAK +
Sbjct: 4 TSEQEQLIHRNAQASKAILSALSPEEFNKVDGLEEAKEIWDTLQLAHEGSPAVREAKIEL 63
Query: 102 LVHQYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVSSDHVSK-ILRSLPSRWRPKVT 160
L + F M D E+ +EMY R LV+ ++ L +++ V K +LR+ R V+
Sbjct: 64 LEGRLGRFVMDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRAFGPRNPTLVS 123
Query: 161 AIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESV 220
I E KD L+ D++ S+ HEM E ++ A K + A KA++
Sbjct: 124 MIRERKDFKRLTPNDILGSIVSHEMQEEEAREVRQMVKNAPMIKNQ----EVALKANQEE 179
Query: 221 EESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNFKKEDQKG-------CFN 273
E S + DE+ L ++ ++ K FL K G Y +K+D KG CFN
Sbjct: 180 ESSCEESEDEE-----------LAFIVKRFKHFLRKSG-YGKGRKDDDKGKRQSKRACFN 227
Query: 274 CKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMA-TWEDLDSESGSDK-EE 331
C + GHFIADCP + K KG KK R + ++ MA W D E K +
Sbjct: 228 CGEYGHFIADCPRSNEAKAKGGKKKPK------RAHVAEAHMAEVWYSGDEEYPEVKPKP 281
Query: 332 ADDDAKAAVGLVATVSSEAVSEAE-------SDSEDENEVYS-------KIPRQELVDSL 377
D G VAT++ ++ S ++ SD +D++ YS K+ Q+ +
Sbjct: 282 KSKDKVEGEGGVATIAFKSSSSSKERLFNNLSDDDDDSYHYSCFMAQGRKVMTQKPSHTS 341
Query: 378 KELLSLFEHRTNELTD-LKEKYVDLMKQQKSTLLELKASEEELKGFNLISATYEDRLKSL 436
++ S E NEL D LK M+ + L + E+ L+ + + R L
Sbjct: 342 LDVDSSDEESDNELDDVLKSLSKPTMQHLAKLMRALDSKEQSLERQEELLILEKKRNLDL 401
Query: 437 CQKLQEKCDKGSGNKHEIALDDFIMAGI 464
+ L ++C K +++ L + +A +
Sbjct: 402 EESLAKECAKNEQLANDLNLANGSLASL 429
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 121 bits (303), Expect = 2e-25
Identities = 114/470 (24%), Positives = 211/470 (44%), Gaps = 64/470 (13%)
Query: 1 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQKKLYKKHHKIRGIIV 60
WK M + + + +W I++ G AI T + + + + +
Sbjct: 22 WKIKMSTHLKAMSFHIWSIVDVGF----------AITGTPLTEIDHRNLQLNAQAMNALF 71
Query: 61 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 120
S+ + E+ ++S+ TA ++ L EG+ + K+AK L QYE F M ES+ +M
Sbjct: 72 NSLSQEEFDRVSNLETAYEIWNKLAKIHEGTSEYKDAKLHFLKIQYETFSMLPHESVNDM 131
Query: 121 YSRFQTLVSGLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 180
Y R +V+ L+ L +Y + K+LR+LP ++ VT + + D++ ++ L+ +
Sbjct: 132 YGRLNVIVNDLKGLGANYTDLEVAKKMLRALPEKYETLVTMLINS-DMSRMTPASLLGKI 190
Query: 181 KVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESVEESPD-GDSDEDQSVKMAML 239
++M ++ KK A PSK K VE+ D +++ ++A+L
Sbjct: 191 NTNDM----YKLKKKEMEEASPSK-------KCIALQAEVEDKGKVNDVNKNLEEEIALL 239
Query: 240 SNKL-EYLARKQKKFLSKRGSYKNFKKEDQK----GCFNCKKPGHFIADCPDLQKEKFKG 294
+ + ++L R++++ + + K+ ++ CF C + GHF + CP + K
Sbjct: 240 ARRFNDFLGRRKERGKGSNSNRRRNKRPNKTLSNLRCFECGEKGHFASKCPSKDDDGDKS 299
Query: 295 KSKKSSFNSSKFRKQIKK------SLMATW---EDLDSESGSDKEEADDDAK-------- 337
KKS K K++KK + + W E+ + SGS +E+ DD +
Sbjct: 300 SKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSKEEDGDDASSKKKKMAVV 357
Query: 338 ---------AAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRT 388
A + L+A SS+ S ++S+S+D+ + I ELV +EL + E
Sbjct: 358 AIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DISYDELVSMFEELHAYSEKEI 414
Query: 389 NELTDLKEKYVD---LMKQQKSTLLELKASEEELKGF--NLISATYEDRL 433
+ LK+ + L ++ K++ L S E+LK NL+S T L
Sbjct: 415 VKFKALKKDHASLEVLYEELKTSHERLTISHEKLKEAHDNLLSTTQHGAL 464
>gb|AAX96502.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 655
Score = 121 bits (303), Expect = 2e-25
Identities = 105/436 (24%), Positives = 193/436 (44%), Gaps = 59/436 (13%)
Query: 1 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQKKLYKKHHKIRGIIV 60
W + M S+IM D ++W + I +I+T A K ++++ K R I++
Sbjct: 20 WCSRMQSYIMAKDYDIWRKVSHPY----------VIPEEINTTALKLEFEQNCKARNILL 69
Query: 61 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 120
+ I R++Y +++ A ++ +L +G+ +KE + + +Y F MK E++++
Sbjct: 70 SGISRSDYDRVAHLQAAHEIWIALSNFHQGTYNIKELRRGLFKKEYIKFEMKPGEALDDY 129
Query: 121 YSRFQTLVSGLQILKKSYVSSDHVSKILRSL-----PSRWRPKVTAIEEAKDLNTLSVED 175
SRF ++S L+ + SY ++ S+I R S W KVT+I+E+ +++TL+++
Sbjct: 130 LSRFNKILSDLRSVDSSYDANYPQSEISRHFLNGLDMSIWEMKVTSIQESVNMSTLTLDS 189
Query: 176 LVSSLKVHEMS-LNEHETSKKSKSIALPSKGKTSKSSKAYKASESVEESPDGDSDEDQSV 234
L + LK HEM+ L+ SK S ++ S SS + D ++ +
Sbjct: 190 LYTKLKTHEMNVLSRKVDSKSSALVSSSSSLDVDTSSSKSSILTLFNATSDDQLEQFEKE 249
Query: 235 KMAMLSNKLEYLARKQKKFLSKRGSYKNFKKEDQKGCFNCKKPGHFIADCPDLQK----- 289
+A+++N++ A F + G + CF C H + CP L +
Sbjct: 250 DLALVANRIA-RAMNNASFRKRGGPNR---------CFECGSIDHLRSHCPKLGRGKRED 299
Query: 290 ---EKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDD-AKAAVGLVAT 345
EK K +F K ++ +KK+ + + S D + DDD K G+
Sbjct: 300 KDGEKTNDNKPKGTFKGRKIKENLKKAFDQVYAAFEPLSDVDGDSGDDDKGKNIFGV--- 356
Query: 346 VSSEAVSEAESDSE-DENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYVDLMKQ 404
++ ESDSE ++NEV S FE N L+ +K + ++
Sbjct: 357 ---RFMARGESDSECEDNEV-----------------SAFEEAINILSAKNKKCEKMYRK 396
Query: 405 QKSTLLELKASEEELK 420
Q+ + L + LK
Sbjct: 397 QEFIIESLNSEIARLK 412
>gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533180|ref|NP_920892.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22748369|gb|AAN05371.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1299
Score = 120 bits (302), Expect = 3e-25
Identities = 117/449 (26%), Positives = 199/449 (44%), Gaps = 73/449 (16%)
Query: 33 GAAIDRKIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSK 92
G AI K T + + + + + S+ + E+ ++S+ TA ++ L EG+
Sbjct: 10 GFAITGKPLTEIDHRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTS 69
Query: 93 KVKEAKALMLVHQYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVSSDHVSKILRSLP 152
+ K+AK L QYE F M ES+ +MY R +V+ L+ L +Y + K+LR+LP
Sbjct: 70 EYKDAKLHFLKIQYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEIAQKMLRALP 129
Query: 153 SRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSK 212
++ VT + + D++ ++ L+ + ++M ++ KK A PSK K
Sbjct: 130 EKYETLVTMLINS-DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSK-------K 177
Query: 213 AYKASESVEESPDG---DSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNFKKEDQK 269
VE+ G +++ED ++A+L+ + L ++K+ RGS N ++ +
Sbjct: 178 CIALQTEVEDKGKGKVNEANEDLEEEIALLARRFNDLLGRKKE--RGRGSNSNRRRNRRP 235
Query: 270 G-------CFNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKK------SLMA 316
CF C + GHF + CP + K KKS K K++KK + +
Sbjct: 236 NKTLSNLRCFECGEKGHFASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIG 293
Query: 317 TWE---DLDSESGSDKEEADDDAK-----------------AAVGLVATVSSEAVSEAES 356
W+ + + SGS++E DD + A + L+A SS+ S ++S
Sbjct: 294 EWDSNKESSASSGSEEEGGDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDS 353
Query: 357 DSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKSTLLELKASE 416
+S+D+ + S E +S+FE EL EK + K K LK
Sbjct: 354 ESDDDCDDV----------SYDEFVSMFE----ELHAYSEKEIVKFKALKKNHASLKVLY 399
Query: 417 EELKGFNLISATYEDRLKSLCQKLQEKCD 445
EELK T +RL +KL+E D
Sbjct: 400 EELK-------TSHERLTISHEKLKETHD 421
>gb|AAK92658.1| Putative retroelement [Oryza sativa]
Length = 1131
Score = 120 bits (302), Expect = 3e-25
Identities = 117/449 (26%), Positives = 199/449 (44%), Gaps = 73/449 (16%)
Query: 33 GAAIDRKIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSK 92
G AI K T + + + + + S+ + E+ ++S+ TA ++ L EG+
Sbjct: 64 GFAITGKPLTEIDHRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTS 123
Query: 93 KVKEAKALMLVHQYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVSSDHVSKILRSLP 152
+ K+AK L QYE F M ES+ +MY R +V+ L+ L +Y + K+LR+LP
Sbjct: 124 EYKDAKLHFLKIQYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEIAQKMLRALP 183
Query: 153 SRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSK 212
++ VT + + D++ ++ L+ + ++M ++ KK A PSK K
Sbjct: 184 EKYETLVTMLINS-DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSK-------K 231
Query: 213 AYKASESVEESPDG---DSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNFKKEDQK 269
VE+ G +++ED ++A+L+ + L ++K+ RGS N ++ +
Sbjct: 232 CIALQTEVEDKGKGKVNEANEDLEEEIALLARRFNDLLGRKKE--RGRGSNSNRRRNRRP 289
Query: 270 G-------CFNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKK------SLMA 316
CF C + GHF + CP + K KKS K K++KK + +
Sbjct: 290 NKTLSNLRCFECGEKGHFASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIG 347
Query: 317 TWE---DLDSESGSDKEEADDDAK-----------------AAVGLVATVSSEAVSEAES 356
W+ + + SGS++E DD + A + L+A SS+ S ++S
Sbjct: 348 EWDSNKESSASSGSEEEGGDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDS 407
Query: 357 DSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKSTLLELKASE 416
+S+D+ + S E +S+FE EL EK + K K LK
Sbjct: 408 ESDDDCDDV----------SYDEFVSMFE----ELHAYSEKEIVKFKALKKNHASLKVLY 453
Query: 417 EELKGFNLISATYEDRLKSLCQKLQEKCD 445
EELK T +RL +KL+E D
Sbjct: 454 EELK-------TSHERLTISHEKLKETHD 475
>gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1411
Score = 120 bits (302), Expect = 3e-25
Identities = 116/475 (24%), Positives = 208/475 (43%), Gaps = 82/475 (17%)
Query: 1 WKTNMYSFIMGLDEELWDILE-----DGVDDLDLDEEGAAIDRKIHTPAQKKLYKKHHKI 55
WK M + + + +W I++ G +++D +++ A L+
Sbjct: 10 WKIKMSTHLKAMSFHIWSIVDVGFAITGTPLMEIDHRNL----QLNAQAMNALFN----- 60
Query: 56 RGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDE 115
S+ + E+ ++S+ TA ++ L E + + K+AK L QYE F M E
Sbjct: 61 ------SLSQEEFDRVSNLETAYEIWNKLAEIHEDTSEYKDAKLHFLKIQYETFSMLPHE 114
Query: 116 SIEEMYSRFQTLVSGLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVED 175
S+ +MY R +V+ L+ L +Y + K+LR+LP ++ VT + + D++ ++
Sbjct: 115 SVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTMLINS-DMSRMTPAS 173
Query: 176 LVSSLKVHEM----SLNEHETSKKSKSIALPSKGKTSKSSKAYKASESVEESPDGDSDED 231
L+ + ++M E S K IAL ++ + SK + +E +EE
Sbjct: 174 LLGKINTNDMYKLKKKEMEEASSSKKCIALQAEVEDKSKSKVNEVNEDLEE--------- 224
Query: 232 QSVKMAMLSNKLEYLARKQKKFLSKRGSYKNFKKEDQKG-------CFNCKKPGHFIADC 284
+M +L+ K L ++K+ RGS N ++ + CF C + GHF + C
Sbjct: 225 ---EMVLLARKFNDLLGRRKE--RGRGSNSNRRRNRRPNKTFSNLRCFECCEKGHFASKC 279
Query: 285 PDLQKEKFKGKSKKSSFNSSKFRKQIKK------SLMATW---EDLDSESGSDKEEADDD 335
P + K KKS K K++KK + + W E+ + SGS++E DD
Sbjct: 280 PSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSTSSGSEEEGGDDA 337
Query: 336 AK-----------------AAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLK 378
+ A + L+A SS+ S ++S+S+D+ + + ELV +
Sbjct: 338 SSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYDELVSMFE 394
Query: 379 ELLSLFEHRTNELTDLKEKYVD---LMKQQKSTLLELKASEEELKGF--NLISAT 428
EL + E + LK+ + L ++ K + L S E+LK NL+S T
Sbjct: 395 ELHAYSEKEIVKFKALKKDHASLEVLYEELKISHERLTISHEKLKEAHDNLLSTT 449
>gb|AAP53715.1| contains similarity to Zea mays retrotransposon Opie-2 [Oryza
sativa (japonica cultivar-group)]
gi|37534252|ref|NP_921428.1| contains similarity to Zea
mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 542
Score = 120 bits (301), Expect = 4e-25
Identities = 87/338 (25%), Positives = 166/338 (48%), Gaps = 22/338 (6%)
Query: 36 IDRKIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVK 95
I I+T A+K ++++ K R I+++ I R++Y +++ TA ++ L +G+ +K
Sbjct: 86 IPEAINTAAEKTAFEQNCKARNILLSGISRSDYDRVAHLQTAHEIWIFLSNFHQGTNNIK 145
Query: 96 EAKALMLVHQYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVSSDHVSKILRSL---- 151
E + + +Y F MK E++++ SRF ++S L+ + SY ++ SKI R
Sbjct: 146 ELRRDLFKTEYIKFEMKPGEALDDYISRFNKILSDLRSVDSSYDANYPQSKIFRHFLNGL 205
Query: 152 -PSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKS 210
S W KVT+I+E+ +++TL+++ L + LK HEM++ + KS + S +
Sbjct: 206 DMSIWEMKVTSIQESVNMSTLTLDSLYTKLKTHEMNIRSRKGDSKSSVLVSSSTFLDVGA 265
Query: 211 SKAYKASESVEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNFKKEDQKG 270
S + + ++ + D E + +LSN +F + +N K+ +
Sbjct: 266 SSSKSSVLALFNAISDDQLEQFEDDLVLLSN----------RFSRAMKNVRNRKRGEPNR 315
Query: 271 CFNCKKPGHFIADCPDLQKEKFK--GKSKKSSFNSSK-FRKQIKKSLMATW--EDLDSES 325
CF C H + CP L + K + G+ K+ N K +++ KK W ++L
Sbjct: 316 CFECGALNHLRSHCPKLGRGKNEDDGRVKEDDVNKKKNMKEKEKKKHCMQWLVQELIKVL 375
Query: 326 GSDKEEADDDAKAAVGL--VATVSSEAVSEAESDSEDE 361
++E + K V L +A +S AV E++ D+E++
Sbjct: 376 DGSEDEDEGKGKQVVDLDFIARNASSAVDESDDDNEEK 413
>emb|CAE05272.1| OSJNBb0014D23.6 [Oryza sativa (japonica cultivar-group)]
gi|50923981|ref|XP_472351.1| OSJNBb0014D23.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1475
Score = 120 bits (301), Expect = 4e-25
Identities = 120/482 (24%), Positives = 205/482 (41%), Gaps = 85/482 (17%)
Query: 1 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQKKLYKKHHKIRGIIV 60
WK M + + + +W I++ G AI T + + + + +
Sbjct: 22 WKIKMSTHLKAMSFYIWSIVDVGF----------AITGTPLTEIDHRNLQLNAQAMNALF 71
Query: 61 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 120
S+ + E+ ++S+ TA ++ L EG+ + K+AK L QYE F M ES+ +M
Sbjct: 72 NSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSMLPHESVNDM 131
Query: 121 YSRFQTLVSGLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 180
Y R +V+ L+ L +Y + K+LR+L ++ VT + + D++ ++ L+ +
Sbjct: 132 YGRLNVIVNDLKGLGANYTDLEVAQKMLRALSEKYETLVTMLINS-DMSRMTPASLLGKI 190
Query: 181 KVHEM----SLNEHETSKKSKSIALPSKGKTSKSSKAYKASESVEESPDGDSDEDQSVKM 236
++M E S K IAL ++ + SK + +E +EE +M
Sbjct: 191 NTNDMYKLKKKEMKEASPSKKCIALQAEVEDKSKSKVNEVNEDLEE------------EM 238
Query: 237 AMLSNKLEYLARKQKKFLSKRGSYKNFKKEDQKG-------CFNCKKPGHFIADCPDLQK 289
+L+ K L ++K+ RGS N ++ + CF C + GHF + CP
Sbjct: 239 VLLARKFNDLLGRRKE--RGRGSNSNRRRNRRPNKTLSNLRCFECGEKGHFASKCPSKDD 296
Query: 290 EKFKGKSKKSSFNSSKFRKQIKK------SLMATWEDLDSESGSD--KEEADDDAK---- 337
+ K KKS K K++KK + + W+ + S S +E+ DDA
Sbjct: 297 DGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGFEEQCSDDASSKKK 354
Query: 338 --------------AAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSL 383
A + L+A SS+ S ++S+S+D+ + S EL+S+
Sbjct: 355 KMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDV----------SYDELVSM 404
Query: 384 FEHRTNELTDLKEKYVDLMKQQKSTLLELKASEEELKGFNLISATYEDRLKSLCQKLQEK 443
FE EL EK + K K L+ EELK T +RL +KL+E
Sbjct: 405 FE----ELHAYSEKEIVKFKALKKDHASLEVLYEELK-------TSHERLTISHEKLKEA 453
Query: 444 CD 445
D
Sbjct: 454 HD 455
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.357 0.156 0.559
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,214,628,343
Number of Sequences: 2540612
Number of extensions: 80536526
Number of successful extensions: 711283
Number of sequences better than 10.0: 3016
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 2961
Number of HSP's that attempted gapping in prelim test: 693187
Number of HSP's gapped (non-prelim): 13419
length of query: 1664
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1522
effective length of database: 502,593,490
effective search space: 764947291780
effective search space used: 764947291780
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 82 (36.2 bits)
Medicago: description of AC147002.8