BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147000.7 - phase: 0 
         (1185 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAT39287.1| putative polyprotein [Solanum demissum]               1343  0.0
ref|XP_468569.1| Putative polyprotein from transposon TNT [Oryza...  1136  0.0
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa (j...  1135  0.0
ref|NP_918597.1| putative retrovirus-related pol polyprotein [Or...  1135  0.0
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa (japonica cultivar...  1135  0.0
gb|AAR01682.1| putative gag and pol protein [Oryza sativa (japon...  1134  0.0
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa (japonica cultivar...  1134  0.0
gb|AAU44026.2| putative polyprotein [Oryza sativa (japonica cult...  1134  0.0
ref|XP_463420.1| putative gag and pol [Oryza sativa (japonica cu...  1132  0.0
ref|XP_475988.1| putative polyprotein [Oryza sativa (japonica cu...  1131  0.0
ref|NP_918682.1| putative retrovirus-related pol polyprotein fro...  1130  0.0
ref|XP_462780.1| putative retrotransposon RIRE1 poly protein [Or...  1130  0.0
ref|XP_493793.1| unnamed protein product [Oryza sativa (japonica...  1130  0.0
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-...  1129  0.0
ref|NP_918918.1| putative retrovirus-related pol polyprotein fro...  1127  0.0
emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa (japonica cultivar...  1126  0.0
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa (japonica cultivar...  1122  0.0
gb|AAV43959.2| putative polyprotein [Oryza sativa (japonica cult...  1121  0.0
ref|NP_909866.1| putative polyprotein [Oryza sativa (japonica cu...  1120  0.0
gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-...  1114  0.0

>gb|AAT39287.1| putative polyprotein [Solanum demissum]
          Length = 1279

 Score = 1343 bits (3476), Expect = 0.0
 Identities = 680/1198 (56%), Positives = 857/1198 (70%), Gaps = 67/1198 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M D+KSV  Q+ +   I  E+ +E + + +   +  I+DKLPP+WK+F+  +RHK KE S
Sbjct: 135  MVDNKSVVDQAQDFIMIVGELRSEEVKIGDNLIVCGIVDKLPPSWKEFQKTMRHKQKETS 194

Query: 61   LESLITRLRIEEEARKQE---QNEEV-------FVVSNNNTKKKFVGAVLKPAGKPFKNQ 110
            LE+LI ++R+EEEAR Q+   Q EE         + SNN T +      LKP  K FK  
Sbjct: 195  LETLIMKIRMEEEARGQDALLQTEENNITTKVNLITSNNATPESHKNTSLKPKKKKFKKN 254

Query: 111  N-RPMNKNSNRNKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAH 169
            N RP  KN+  N    N + Q + P          C+ CG++ H+AR CR R   P    
Sbjct: 255  NGRPPKKNNGENIQAQNQQVQDKGP----------CFVCGKSGHIARFCRFRKRGPNPQA 304

Query: 170  MATDAAPDEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQK-VLLGD 228
              T+    EP+VA+IT+INM+   DGWW D+GA+RHVCYD+D FK YT  ++ K ++LGD
Sbjct: 305  NVTE----EPFVAVITDINMVENVDGWWADSGANRHVCYDKDWFKKYTHFEEPKTIMLGD 360

Query: 229  SHSTDVVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTIT 288
            SH+T V+G GD+EL FTS + L LKDVL+TP +RK L+S FLLNKAGF Q I ++ Y I 
Sbjct: 361  SHTTQVLGTGDVELCFTSGRVLTLKDVLYTPSMRKKLMSSFLLNKAGFKQIIESNQYVIV 420

Query: 289  KNGIFVGKGYATDGMFKLNIDMNKISSSAYMLCDFNIWHSRLCHVNKRIISNMSGLGLIP 348
            K GIFVGKGYA DGMFKLN++MNK S+S YML   N WH+RLCH+N R +  MS LGLIP
Sbjct: 421  KKGIFVGKGYACDGMFKLNVEMNKTSTSVYMLSSTNFWHARLCHINDRYVGIMSSLGLIP 480

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVTRITEPFELIHSDLCELDGNLTRNGKRYFITFID 408
             I  N FEKC+ CS+AKI K  H  V R T+  EL+H+D+CEL G LTR G RYFITFID
Sbjct: 481  MIKKN-FEKCEACSKAKITKRPHFQVERKTDLLELVHTDICELGGILTRGGNRYFITFID 539

Query: 409  DCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKELG 468
            D S +T+VYLM+NK++A + FK Y+ E+ENQF  +IKR RSDRG EY S+ FN + + LG
Sbjct: 540  DFSKFTYVYLMKNKSDAFENFKTYLHEVENQFGRKIKRIRSDRGREYESNEFNSFVRSLG 599

Query: 469  IIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKTK 528
            IIHETT PYSP  NG AERKNRT  EL  A ++ S A  ++WGE +LT CYVLNRVP  K
Sbjct: 600  IIHETTPPYSPSSNGVAERKNRTLVELTNAMLIESHAPLNFWGEAILTACYVLNRVPHKK 659

Query: 529  NKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRFY 588
            +K++P+E+ K  +P+L Y R WGCLA+VR  DPK  KL  +   CAF+GYA NS AYRF+
Sbjct: 660  SKLTPFELWKGYKPSLGYLRVWGCLAFVRLMDPKITKLGKKVTTCAFLGYASNSTAYRFF 719

Query: 589  DLKSKTIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNENIERDVIEPG 648
            +L+   +IES D  F+ENKFPF S +SGG     + ++L  PS   ++ +N E +  E  
Sbjct: 720  NLEDNIVIESGDAIFHENKFPFDSKNSGGQR--IEQNILTLPSSSTSTLKNKEVNDFELR 777

Query: 649  RGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQEAINDEMDSLMSNETWHLTD 708
            R KRAR+ K++GP++  + + +D  ++KEALSS D+  W+EA+NDEM+SL+SN+TW L D
Sbjct: 778  RSKRARVEKDFGPDFYVFNVGDDRLTLKEALSSHDSIFWKEAVNDEMESLISNKTWKLVD 837

Query: 709  LPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFDTYSPVTRITSIRVL 768
            LPPGCKTIGCKW+L+KKLKPDGSIDKYKARLVAKGF+Q E ++FFDT+SPVTRITSIR+L
Sbjct: 838  LPPGCKTIGCKWVLRKKLKPDGSIDKYKARLVAKGFKQLEGLEFFDTFSPVTRITSIRLL 897

Query: 769  ISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHGQENKVCKLDKSLYGLKQAP 828
            I++AAI +L +HQMDVKTAFLNG+L EEIYMDQPE FV  GQE+KVCKL KSLYGLKQAP
Sbjct: 898  IAMAAIFDLQIHQMDVKTAFLNGDLNEEIYMDQPESFVEAGQESKVCKLTKSLYGLKQAP 957

Query: 829  KQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLIFGSNLNAIKDVKSL 888
            KQWHEKFD+ MIEN FK NE DKCIY K  NN+  IICLYVDDLLIFGSN+N I + K++
Sbjct: 958  KQWHEKFDSCMIENGFKTNECDKCIYHKSWNNSHVIICLYVDDLLIFGSNINVIDETKNI 1017

Query: 889  LCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKILRKYNYFYCKPASTPCDPSVK 948
            L  +FDMKDLG+A+VILGIKITRT +GI L+QSHYVEKIL+KYN+  CK  +TP D SV 
Sbjct: 1018 LRSHFDMKDLGEANVILGIKITRTCDGIFLDQSHYVEKILKKYNFLDCKHVATPFDSSVH 1077

Query: 949  LF--KNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCKFTSRPSMEHWQAIERVM 1006
            LF  ++  D + Q EYASIIGSLRY TDCTRPDI+YAVG+L +FTS+P  EHW A+ RVM
Sbjct: 1078 LFPVESENDVINQKEYASIIGSLRYVTDCTRPDIAYAVGVLGRFTSKPGNEHWHAVTRVM 1137

Query: 1007 RYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIFSIAGGAVSWKSKKQTIL 1066
            RYL  T   G                                    GGA+ W+SKKQTI+
Sbjct: 1138 RYLIGTKNCG------------------------------------GGAICWRSKKQTII 1161

Query: 1067 AQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTAAIAKIENRYYNGK 1126
            A STME+E+IALA+ASEEA+WLR LL ++P +E+P+P +LIHC+STAAI +++NRYYNGK
Sbjct: 1162 ANSTMEAELIALASASEEANWLRDLLFQLPYFEKPIPPILIHCNSTAAIGRVQNRYYNGK 1221

Query: 1127 RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNREKVANTSSRMGLMPIDH 1184
             R IRRKHS +R YL+NGT+ VD+V++  NLADPLTK L REKV +TS  MGL PI+H
Sbjct: 1222 SRPIRRKHSNVRSYLTNGTINVDYVKSCNNLADPLTKALTREKVWSTSRGMGLKPINH 1279


>ref|XP_468569.1| Putative polyprotein from transposon TNT [Oryza sativa (japonica
            cultivar-group)] gi|24431600|gb|AAN61480.1| Putative
            polyprotein from transposon TNT [Oryza sativa (japonica
            cultivar-group)]
          Length = 1911

 Score = 1136 bits (2938), Expect = 0.0
 Identities = 591/1218 (48%), Positives = 790/1218 (64%), Gaps = 61/1218 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVL 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTFAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+N+  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ N   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPIDH 1184
            R  + N S  MGL PI +
Sbjct: 1287 RNVIDNASKEMGLRPISN 1304


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa (japonica
            cultivar-group)] gi|50900582|ref|XP_462724.1| putative
            Gag and Pol polyprotein [Oryza sativa (japonica
            cultivar-group)] gi|34913798|ref|NP_918246.1| putative
            polyprotein from transposon TNT 1-94 [Oryza sativa
            (japonica cultivar-group)]
          Length = 1302

 Score = 1135 bits (2937), Expect = 0.0
 Identities = 590/1216 (48%), Positives = 789/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVL 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+N+  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ N   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>ref|NP_918597.1| putative retrovirus-related pol polyprotein [Oryza sativa (japonica
            cultivar-group)]
          Length = 1302

 Score = 1135 bits (2937), Expect = 0.0
 Identities = 590/1216 (48%), Positives = 789/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVL 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+N+  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ N   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa (japonica cultivar-group)]
            gi|50930491|ref|XP_474773.1| OSJNBa0040D17.9 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1319

 Score = 1135 bits (2936), Expect = 0.0
 Identities = 591/1216 (48%), Positives = 787/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPSVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + RI R RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRRINRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  YVLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNYVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+ +ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRVLERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL PI
Sbjct: 1287 RNVIDNASKEMGLRPI 1302


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa (japonica cultivar-group)]
            gi|50918819|ref|XP_469806.1| putative gag and pol protein
            [Oryza sativa (japonica cultivar-group)]
          Length = 1302

 Score = 1134 bits (2934), Expect = 0.0
 Identities = 590/1216 (48%), Positives = 789/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVL 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa (japonica cultivar-group)]
            gi|50921825|ref|XP_471273.1| OSJNBb0043H09.7 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1302

 Score = 1134 bits (2934), Expect = 0.0
 Identities = 592/1216 (48%), Positives = 789/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKSSKCHSCVQSKQPRKPHKAAKERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  EIENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEIENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  SEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EAI  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAICSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +I   F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLISAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LG HY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGFHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>gb|AAU44026.2| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1391

 Score = 1134 bits (2932), Expect = 0.0
 Identities = 589/1216 (48%), Positives = 789/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 203  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 262

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 263  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 316

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 317  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 366

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 367  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 426

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 427  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 486

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 487  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 545

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 546  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 605

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 606  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 665

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNR+P  
Sbjct: 666  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRIPNR 725

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 726  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 785

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 786  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 835

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 836  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 895

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 896  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 955

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 956  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 1015

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 1016 EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 1075

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 1076 YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1135

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1136 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1195

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1196 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1255

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1256 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1315

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1316 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1375

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1376 RNVIDNASKEMGLRPM 1391


>ref|XP_463420.1| putative gag and pol [Oryza sativa (japonica cultivar-group)]
          Length = 1302

 Score = 1132 bits (2928), Expect = 0.0
 Identities = 589/1216 (48%), Positives = 788/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP +F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPNKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEYTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E+ DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKT FLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EDEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTVFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>ref|XP_475988.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|48475093|gb|AAT44162.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
          Length = 1302

 Score = 1131 bits (2926), Expect = 0.0
 Identities = 589/1216 (48%), Positives = 790/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLP +W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPSSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S ++  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKDDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCSQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+TFI
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG A+RKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAKRKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKHKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY RYPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTRYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+ +PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKLVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>ref|NP_918682.1| putative retrovirus-related pol polyprotein from transposon TNT 1-94
            [Oryza sativa (japonica cultivar-group)]
          Length = 1302

 Score = 1130 bits (2924), Expect = 0.0
 Identities = 592/1216 (48%), Positives = 790/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+TFI
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + KE 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCKEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSN--- 637
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVLDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 638  -ENIER--------DVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
             E IE         DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQIEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTEQPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE++KC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFGVNEANKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +N I+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENRITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP D S+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDLSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPIVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  +IR+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSIRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>ref|XP_462780.1| putative retrotransposon RIRE1 poly protein [Oryza sativa (japonica
            cultivar-group)]
          Length = 1302

 Score = 1130 bits (2923), Expect = 0.0
 Identities = 588/1216 (48%), Positives = 789/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGMVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSMDNEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGMLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DA+ W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDANYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+++ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAKLTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>ref|XP_493793.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
          Length = 1302

 Score = 1130 bits (2922), Expect = 0.0
 Identities = 586/1206 (48%), Positives = 789/1206 (64%), Gaps = 41/1206 (3%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+TFI
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GII+E T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIYEMTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSG-GTDNSVLDQPSEIITSNEN 639
              +KS+       TI+ES D  F+E+ FP K   SG N       S +  P +   ++E 
Sbjct: 697  LIVKSEVPDMHVGTIMESRDAIFFESFFPMKDTHSGSNQPFEIIPSSITPPEQTEHTHEL 756

Query: 640  I-ERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQEAINDEMDS 697
            + E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W+EA+  EMDS
Sbjct: 757  VSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDS 816

Query: 698  LMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFDTYS 757
            +++N TW + + P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+E  DFFDTYS
Sbjct: 817  IIANGTWEVIERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYS 876

Query: 758  PVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHGQENKVCKL 817
            PV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+ GQE KVCKL
Sbjct: 877  PVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQERKVCKL 936

Query: 818  DKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLIFGS 877
             KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CLYVDD+LIFG+
Sbjct: 937  LKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGT 996

Query: 878  NLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKILRKYNYFYCK 937
            NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKIL ++ Y   K
Sbjct: 997  NLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSK 1056

Query: 938  PASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCKFTSRPSME 997
            P+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L +FTS P  +
Sbjct: 1057 PSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDD 1116

Query: 998  HWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIFSIAGGAVS 1057
            HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY+F++ GGAVS
Sbjct: 1117 HWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVS 1176

Query: 1058 WKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTAAIAK 1117
            W+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L++CD+   I K
Sbjct: 1177 WRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVK 1236

Query: 1118 IENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNREKVANTSSR 1176
            + +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+R  + N S  
Sbjct: 1237 VNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKE 1296

Query: 1177 MGLMPI 1182
            MGL PI
Sbjct: 1297 MGLRPI 1302


>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            (japonica cultivar-group)] gi|50916721|ref|XP_468757.1|
            putative polyprotein [Oryza sativa (japonica
            cultivar-group)]
          Length = 1302

 Score = 1129 bits (2921), Expect = 0.0
 Identities = 589/1216 (48%), Positives = 787/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDT A+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTRANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPLLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>ref|NP_918918.1| putative retrovirus-related pol polyprotein from transposon TNT 1-94
            [Oryza sativa (japonica cultivar-group)]
          Length = 1302

 Score = 1127 bits (2916), Expect = 0.0
 Identities = 588/1216 (48%), Positives = 787/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADILLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVL 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y +       I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRNGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+N+  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP D S+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDSSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa (japonica cultivar-group)]
            gi|50923051|ref|XP_471886.1| OSJNBb0112E13.7 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1342

 Score = 1126 bits (2913), Expect = 0.0
 Identities = 586/1217 (48%), Positives = 789/1217 (64%), Gaps = 61/1217 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S ++  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKSDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGLGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+W+SRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWYSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDL E++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEKRNLAPLELLHSDLYEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATTFCYVYLLKMKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVLDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N  W +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGIWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSP+ R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPIARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGKGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNNRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ER+MRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERIMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPID 1183
            R  + N S  MGL PI+
Sbjct: 1287 RNVIDNASKEMGLRPIE 1303


>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa (japonica cultivar-group)]
            gi|50923761|ref|XP_472241.1| OSJNBa0072D21.4 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1319

 Score = 1122 bits (2902), Expect = 0.0
 Identities = 587/1216 (48%), Positives = 785/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  W VD GA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWRVDIGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LI 
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIS 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K  +    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFYIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL PI
Sbjct: 1287 RNVIDNASKEMGLRPI 1302


>gb|AAV43959.2| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1268

 Score = 1121 bits (2899), Expect = 0.0
 Identities = 577/1209 (47%), Positives = 791/1209 (64%), Gaps = 53/1209 (4%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M DD+SV  Q+HE+Q +A E+      LP++F    II KLPP+W DF + L+HK +EFS
Sbjct: 84   MVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFS 143

Query: 61   LESLITRLRIEEEAR-KQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSN 119
            +  LI  L +EE+AR K  + ++V   S+ N  +K           P  + N    K   
Sbjct: 144  VPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQK---------KNPHASHNNKKVKPDV 194

Query: 120  RNKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAPDEP 179
            + K   N + + +   K D      C+ CG++ H A+ C  R +R +   + ++      
Sbjct: 195  KPKAATNFKKKSKGKAKGD------CFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSG 248

Query: 180  YVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTDVVGIGD 239
            Y  ++  +  +  S  WWVDTGA+ HVC D  +F +Y       +L+G+     V G+G 
Sbjct: 249  YGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAAVHGVGT 308

Query: 240  IELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIFVGKGYA 299
            ++LKFTS KT+ LK+V H P I+KNLVSG LL + GF     ++   ++K G FVGKGY 
Sbjct: 309  VDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYD 368

Query: 300  TDGMFKLNID--------MNKISSSAYMLCDFNIWHSRLCHVNKRIISNMSGLGLIPKIS 351
            + G+F+ +++        +N IS +     + N+WHSRLCHVN   ++ ++ + LIPK +
Sbjct: 369  SGGLFRFSLNDMCNNHNAVNHISEND----ESNVWHSRLCHVNFGCMTRLANMSLIPKFT 424

Query: 352  LNDFEKCQFCSQAKINKESHK-SVTRITEPFELIHSDLCELDGNLTRNGKRYFITFIDDC 410
            L    KC  C Q+K  ++ HK S  R   P EL+HSDLCE++G LT+ GK+YF T IDDC
Sbjct: 425  LVKDSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFTTLIDDC 484

Query: 411  SDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKELGII 470
            + + +VYL++ K+EAL  FK Y  E+ENQ   +IKR RSDRG EY S+ F  + +E GII
Sbjct: 485  TRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGII 544

Query: 471  HETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKTKNK 530
            HE T PYSP+ NG AERKNRT TE+V A +  +G +  WWGE +LT C+VLN++P    +
Sbjct: 545  HEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKE 604

Query: 531  ISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRFY-- 588
            ++P+E  ++++ NLSY RTWGCLA V  P  K+ KL  +  +C F+GYA++S  YRF   
Sbjct: 605  VTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIV 664

Query: 589  -----DLKSKTIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEII--------T 635
                 D+   TI+ES D  F+EN+FP K   S      T +     P E          T
Sbjct: 665  NSGVPDMHVGTILESRDATFFENEFPMKYTPS------TSSKETVMPHEHFAPIEHNDQT 718

Query: 636  SNENIERD-VIEPGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQEAINDE 694
              EN E D +++  + KR R+AK +G +Y+ Y +++ P +I+EA SS DAD W+EA+  E
Sbjct: 719  PEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSE 778

Query: 695  MDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFD 754
            MDS+MSN TW + + P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+E  DFFD
Sbjct: 779  MDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 838

Query: 755  TYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHGQENKV 814
            TYSPV R+T+IRVL++LAA H L+VHQMDVKTAFLNGELEEEIYMDQP+G+V+ GQE  V
Sbjct: 839  TYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMV 898

Query: 815  CKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLI 874
            CKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y +Y      I+CLYVDD+LI
Sbjct: 899  CKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILI 958

Query: 875  FGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTD-NGISLNQSHYVEKILRKYNY 933
            FG++LN I++VK  L  +F+MKDLG+ADVIL IK+ R D  GI+L QSHYV+K+L ++ Y
Sbjct: 959  FGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVLSRFGY 1018

Query: 934  FYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCKFTSR 993
              CKPA TP DPSV L KN   +  Q  Y+ IIGSL Y    TRPDIS+AV  L +F S 
Sbjct: 1019 SDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSN 1078

Query: 994  PSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIFSIAG 1053
            P  +HWQA+ERVMRYLK TM+ G+HY  YP VLEGYSD++W + +D+ KATSGY+F++ G
Sbjct: 1079 PGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGG 1138

Query: 1054 GAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTA 1113
            GAVSWKS KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L++CD+  
Sbjct: 1139 GAVSWKSCKQTILTRSTMETELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQT 1198

Query: 1114 AIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNREKVAN 1172
             I K+ +   N K  R I+R+  ++R+  ++G + +D+V+T  NLAD  TKGL R  + +
Sbjct: 1199 VIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVITLDYVQTARNLADQFTKGLPRNVIDS 1258

Query: 1173 TSSRMGLMP 1181
             S  MGL+P
Sbjct: 1259 ASREMGLIP 1267


>ref|NP_909866.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|20303592|gb|AAM19019.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
          Length = 1394

 Score = 1120 bits (2896), Expect = 0.0
 Identities = 576/1209 (47%), Positives = 790/1209 (64%), Gaps = 53/1209 (4%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M DD+SV  Q+HE+Q +A E+      LP++F    II KLPP+W DF + L+HK +EFS
Sbjct: 210  MVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGDIIAKLPPSWSDFATSLKHKRQEFS 269

Query: 61   LESLITRLRIEEEAR-KQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSN 119
            +  LI  L +EE+AR K  + ++V   S+ N  +K           P  + N    K   
Sbjct: 270  VPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQK---------KNPHASHNNKKVKPDV 320

Query: 120  RNKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAPDEP 179
            + K   N + + +   K D      C+ CG++ H A+ C  R +R +   + ++      
Sbjct: 321  KPKAATNFKKKSKGKAKGD------CFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSG 374

Query: 180  YVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTDVVGIGD 239
            Y  ++  +  +  S  WWVDTGA+ HVC D  +F +Y       +L+G+     V G+G 
Sbjct: 375  YGKILPRVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAAVHGVGT 434

Query: 240  IELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIFVGKGYA 299
            ++LKFTS KT+ LK+V H P I+KNLVSG LL + GF     ++   ++K G FVGKGY 
Sbjct: 435  VDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYD 494

Query: 300  TDGMFKLNID--------MNKISSSAYMLCDFNIWHSRLCHVNKRIISNMSGLGLIPKIS 351
            + G+F+ +++        +N IS +     + N+WHSRLCHVN   ++ ++ + LIPK +
Sbjct: 495  SGGLFRFSLNDMCNNHNVVNHISEND----ESNVWHSRLCHVNFGCMTRLANMSLIPKFT 550

Query: 352  LNDFEKCQFCSQAKINKESHK-SVTRITEPFELIHSDLCELDGNLTRNGKRYFITFIDDC 410
            L    KC  C Q+K  ++ HK S  R   P EL+HSDLCE++G LT+ GK+YF+T IDDC
Sbjct: 551  LVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDC 610

Query: 411  SDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKELGII 470
            + + +VYL++ K+EAL  FK Y  E+ENQ   +IKR RSDRG EY S+ F  + +E GII
Sbjct: 611  TRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGII 670

Query: 471  HETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKTKNK 530
            HE T PYSP+ NG AERKNRT TE+V A +  +G +  WWGE +LT C+VLN++P    +
Sbjct: 671  HEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGETVLTACHVLNKIPMKHKE 730

Query: 531  ISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRFY-- 588
            ++P+E  ++++ NLSY RTWGCLA V  P  K+ KL  +  +C F+GYA++S  YRF   
Sbjct: 731  VTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIV 790

Query: 589  -----DLKSKTIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITS------- 636
                 D+   TI+ES D  F+EN+FP K   S      T +     P E  T        
Sbjct: 791  NSGVPDMHVGTILESRDATFFENEFPMKYTPS------TSSKETVMPHEHFTPIEHNDQT 844

Query: 637  -NENIERD-VIEPGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQEAINDE 694
              EN E D +++  + KR R+ K +G +Y+ Y +++ P +I+EA SS DAD W+EA+  E
Sbjct: 845  PEENPEEDNIVDTRKSKRQRVVKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSE 904

Query: 695  MDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFD 754
            MDS+MSN TW + + P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+E  DFFD
Sbjct: 905  MDSIMSNGTWEIVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 964

Query: 755  TYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHGQENKV 814
            TYSPV R+T+IRVL++LAA H L+VHQMDVKTAFLNGELEEEIYMDQP+G+V+ GQE  V
Sbjct: 965  TYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMV 1024

Query: 815  CKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLI 874
            CKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y +Y      I+CLYVDD+LI
Sbjct: 1025 CKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILI 1084

Query: 875  FGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTD-NGISLNQSHYVEKILRKYNY 933
            FG++LN I++VK  L  +F+MKDLG+ADVIL IK+ R D  GI+L QSHYV+K+L ++ Y
Sbjct: 1085 FGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVLSRFGY 1144

Query: 934  FYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCKFTSR 993
              CKPA TP DPSV L KN   +  Q  Y+ IIGSL Y    TRPDIS+AV  L +F S 
Sbjct: 1145 SDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSN 1204

Query: 994  PSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIFSIAG 1053
            P  +HWQA+ERVMRYLK TM+ G+HY  YP VLEGYSD++W + +D+ KATSGY+F++ G
Sbjct: 1205 PGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGG 1264

Query: 1054 GAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTA 1113
            GAVSWKS KQTIL +STME+E+ AL  A  EA WLR LL ++P+ E+P+PA+L++CD+  
Sbjct: 1265 GAVSWKSCKQTILTRSTMEAELTALDTAIVEAEWLRELLMDLPVVEKPVPAILMNCDNQT 1324

Query: 1114 AIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNREKVAN 1172
             I K+ +   N K  R I+R+  ++R+  ++G + +D+V+T  NLAD  TKGL R  + +
Sbjct: 1325 VIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPRNVIDS 1384

Query: 1173 TSSRMGLMP 1181
             S  MGL+P
Sbjct: 1385 ASREMGLIP 1393


>gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            (japonica cultivar-group)]
          Length = 1302

 Score = 1114 bits (2881), Expect = 0.0
 Identities = 580/1206 (48%), Positives = 778/1206 (64%), Gaps = 41/1206 (3%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++      V S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------VASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     +    ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESSKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSWLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+  KRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGAKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ +  E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCAEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWG L  V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGYLVKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGT--DNSVLDQPSEIITSNE 638
              +KS+       TI+ES D  F+E+ FP K   SG N       NS+        T   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPNSITPPEQTEHTHEL 756

Query: 639  NIERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQEAINDEMDS 697
              E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W+EA+  EMDS
Sbjct: 757  VSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEALRSEMDS 816

Query: 698  LMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFDTYS 757
            +++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+E  DFFDTYS
Sbjct: 817  IIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYS 876

Query: 758  PVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHGQENKVCKL 817
            PV R+T+IRVL+SLAA H L+VHQMDVKT FLNGEL++EIYM QP+GFV+ GQE KVCKL
Sbjct: 877  PVARLTTIRVLLSLAASHGLLVHQMDVKTTFLNGELDKEIYMYQPDGFVVEGQEGKVCKL 936

Query: 818  DKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLIFGS 877
             KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CLYVDD+LIFG+
Sbjct: 937  LKSLYGLKQAPKQWHEKFDKTLTSVGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGT 996

Query: 878  NLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKILRKYNYFYCK 937
            NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKIL ++ Y   K
Sbjct: 997  NLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSK 1056

Query: 938  PASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCKFTSRPSME 997
            P+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L +FTS P  +
Sbjct: 1057 PSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDD 1116

Query: 998  HWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIFSIAGGAVS 1057
            HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY+F++ GGAVS
Sbjct: 1117 HWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVS 1176

Query: 1058 WKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTAAIAK 1117
            W+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L++CD+   I K
Sbjct: 1177 WRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVK 1236

Query: 1118 IENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNREKVANTSSR 1176
            + +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP T GL+R  + N S  
Sbjct: 1237 VNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTMGLSRNVIDNASKE 1296

Query: 1177 MGLMPI 1182
            MGL P+
Sbjct: 1297 MGLRPM 1302


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,066,840,460
Number of Sequences: 2540612
Number of extensions: 92456324
Number of successful extensions: 387001
Number of sequences better than 10.0: 3123
Number of HSP's better than 10.0 without gapping: 2429
Number of HSP's successfully gapped in prelim test: 695
Number of HSP's that attempted gapping in prelim test: 376670
Number of HSP's gapped (non-prelim): 5628
length of query: 1185
length of database: 863,360,394
effective HSP length: 139
effective length of query: 1046
effective length of database: 510,215,326
effective search space: 533685230996
effective search space used: 533685230996
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)