BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147000.3 + phase: 0 /pseudo
(651 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg... 251 5e-65
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 216 1e-54
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 215 3e-54
gb|AAP53436.1| putative retroelement [Oryza sativa (japonica cul... 215 3e-54
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 215 3e-54
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 214 5e-54
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 213 2e-53
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 213 2e-53
gb|AAX96121.1| retrotransposon protein, putative, unclassified [... 209 2e-52
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 206 2e-51
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 206 2e-51
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 206 2e-51
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 202 2e-50
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 201 6e-50
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 201 8e-50
gb|AAP53939.1| putative non-LTR retroelement reverse transcripta... 201 8e-50
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 200 1e-49
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 200 1e-49
emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultiva... 200 1e-49
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 199 2e-49
>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
gi|7484649|pir||T14619 reverse transcriptase - beet
retrotransposon (fragment)
Length = 507
Score = 251 bits (641), Expect = 5e-65
Identities = 115/227 (50%), Positives = 161/227 (70%)
Query: 2 LPFRKLSLREAGNLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQF 61
L F KLS E +L PF+HEE+ +AV CD+ K+PGP+G +F FIK W+++K D +
Sbjct: 281 LNFNKLSESECSSLIAPFTHEEIDEAVDSCDAQKAPGPDGFNFKFIKSSWEVIKKDIYKI 340
Query: 62 LVDFHRNGKLIKGVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIG 121
+ DF +G L G NS FIALIPK +P+ N++ PIS+VGCLYK++AK+LA RL+ V+
Sbjct: 341 VEDFWASGSLPHGCNSAFIALIPKTQHPRGFNEFRPISMVGCLYKIIAKILARRLQRVMD 400
Query: 122 SVVSDSQSAFIKGN*ILDGILIANEVVDDARRMDKELLLFRVDFEKAYDSVDLKYLDMVM 181
++ QS+FIKG ILDG+LIA+E++D RRM E ++ ++DF KA+DS+ YL+ V+
Sbjct: 401 HLIGPYQSSFIKGRQILDGVLIASELIDSCRRMKNEAVVLKLDFHKAFDSISWNYLEWVL 460
Query: 182 VTMNFPTLWQKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLS 228
MNFP +W+ WI C+ +A AAVL+NG P F ++RGLRQGDPLS
Sbjct: 461 CQMNFPLVWRSWIRSCVMSASAAVLINGSPSSVFKLQRGLRQGDPLS 507
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 216 bits (551), Expect = 1e-54
Identities = 113/303 (37%), Positives = 178/303 (58%), Gaps = 2/303 (0%)
Query: 6 KLSLREAGNLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDF 65
K++ +A L P + EE++ V+D KSPGP+G+ F FWDL+K D + + DF
Sbjct: 226 KVTEEDAIGLITPVTMEELRNVVFDLKKNKSPGPDGMPGEFYIHFWDLIKHDLLDLINDF 285
Query: 66 HRNGKLIKGVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVS 125
RN I +N I LIPK + ++ + PI L+ +K++ KVL NRL + ++S
Sbjct: 286 QRNSVNIDRLNFGVITLIPKTKDASQIQKFRPICLLNVSFKIITKVLMNRLNGTMAYIIS 345
Query: 126 DSQSAFIKGN*ILDGILIANEVVDDARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMN 185
Q+AF+K I++G++I +EV++ + + +LF+VDFEKAYD V+ ++ ++
Sbjct: 346 KQQTAFLKNRFIMEGVVILHEVLNSIHQKKQSGILFKVDFEKAYDKVNWVFIYRMLKAKG 405
Query: 186 FPTLWQKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQ 245
FP W WI + + K AV VN F +GLRQGDPLSP LF LAAE +L+++
Sbjct: 406 FPDQWCDWIMKVVMGGKVAVKVNDQIGSFFKTHKGLRQGDPLSPLLFNLAAEALTLLVQR 465
Query: 246 MAGAQLFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNF 305
L G +G G+ + LQ+ADDT+ + + ++++ +L LFE++SGLK+NF
Sbjct: 466 AEENSLIEG--LGTNGDNKIAILQYADDTIFLINDKLDHAKNLKYILCLFEQLSGLKINF 523
Query: 306 HKS 308
+KS
Sbjct: 524 NKS 526
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 215 bits (548), Expect = 3e-54
Identities = 112/301 (37%), Positives = 176/301 (58%), Gaps = 4/301 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
+LTK S E+ A+ K+PGP+G++ F K W++V D ++ + F R + +
Sbjct: 785 DLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQ 844
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
+N T I +IPK+ NP+ L+DY PI+L LYK+++K L RL+ + ++VSDSQ+AFI
Sbjct: 845 SINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIP 904
Query: 134 GN*ILDGILIANEVVDD---ARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
G + D ++IA+E++ +R+ + + + D KAYD V+ +L+ M F W
Sbjct: 905 GRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETW 964
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
KWI + + +VLVNG P +RG+RQGDPLSP+LF+L A+ N L+K
Sbjct: 965 IKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEG 1024
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
G +G G +THLQFADD+L + + N ++++ V ++E SG K+N KSM+
Sbjct: 1025 DIRGIRIGN-GVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMI 1083
Query: 311 T 311
T
Sbjct: 1084 T 1084
>gb|AAP53436.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533694|ref|NP_921149.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19920114|gb|AAM08546.1| Putative retroelement [Oryza
sativa]
Length = 586
Score = 215 bits (548), Expect = 3e-54
Identities = 108/303 (35%), Positives = 182/303 (59%), Gaps = 2/303 (0%)
Query: 6 KLSLREAGNLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDF 65
++S + LTKPFS EEVK+ V++ ++PGP+G F +FW ++K + + + DF
Sbjct: 6 QVSKEDKVELTKPFSLEEVKKVVFEMRQNRAPGPDGFPAEFYVKFWGIIKFELLDLINDF 65
Query: 66 HRNGKLIKGVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVS 125
H ++ +N + L+PK + +++ + PI L+ +K++ KVL NRL ++ ++S
Sbjct: 66 HNGFLEVERLNYGIVTLVPKTKDAEQIQKFRPICLLNVSFKIITKVLMNRLDRIMTYIIS 125
Query: 126 DSQSAFIKGN*ILDGILIANEVVDDARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMN 185
+Q+AF+K I++GI+I +E+++ +LF+VDFEKAYD VD ++ ++ +
Sbjct: 126 KNQTAFLKNRFIMEGIVILHELLNSLHTKKSSGILFKVDFEKAYDMVDWGFIYRILHSKG 185
Query: 186 FPTLWQKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQ 245
FP W W+ + + K A+ VN F+ +GLRQGDPLSP LF LAAE +L+++
Sbjct: 186 FPDQWCDWVMKVVRGGKVAIKVNDEVGPYFNTHKGLRQGDPLSPLLFNLAAEALTLLVQR 245
Query: 246 MAGAQLFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNF 305
L G + +V T LQ+ADDT+ + + R+++ +L LFE++SGLK+NF
Sbjct: 246 AENNSLVEGLPINENNKV--TILQYADDTIFMIKDDPEQARNLKFILCLFEQLSGLKINF 303
Query: 306 HKS 308
+KS
Sbjct: 304 NKS 306
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 215 bits (548), Expect = 3e-54
Identities = 112/301 (37%), Positives = 176/301 (58%), Gaps = 4/301 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
+LTK S E+ A+ K+PGP+G++ F K W++V D ++ + F R + +
Sbjct: 805 DLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQ 864
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
+N T I +IPK+ NP+ L+DY PI+L LYK+++K L RL+ + ++VSDSQ+AFI
Sbjct: 865 SINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIP 924
Query: 134 GN*ILDGILIANEVVDD---ARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
G + D ++IA+E++ +R+ + + + D KAYD V+ +L+ M F W
Sbjct: 925 GRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETW 984
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
KWI + + +VLVNG P +RG+RQGDPLSP+LF+L A+ N L+K
Sbjct: 985 IKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEG 1044
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
G +G G +THLQFADD+L + + N ++++ V ++E SG K+N KSM+
Sbjct: 1045 DIRGIRIGN-GVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMI 1103
Query: 311 T 311
T
Sbjct: 1104 T 1104
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 214 bits (546), Expect = 5e-54
Identities = 114/300 (38%), Positives = 178/300 (59%), Gaps = 4/300 (1%)
Query: 15 LTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIKG 74
LT+ F E+ +A+ K+PGP+G++ F K+ WD+V +D ++ + F + +
Sbjct: 45 LTQDFRDSEIFEAICQIGDDKAPGPDGLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTS 104
Query: 75 VNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIKG 134
VN T I +IPK+ NPQ L+DY PI+L LYKV++K + NRL+ + S+VSDSQ+AFI G
Sbjct: 105 VNHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPG 164
Query: 135 N*ILDGILIANEVVDD---ARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLWQ 191
I D ++IA+E++ +R+ K + + D KAYD V+ +L+ M F W
Sbjct: 165 RIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWI 224
Query: 192 KWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQL 251
WI + + +VL+NG P S RG+RQGDPLSP+LF+L + + L+K A +
Sbjct: 225 GWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGD 284
Query: 252 FNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSMLT 311
G +G G +THLQFADD+L + + N ++++ V ++E SG K+N KS++T
Sbjct: 285 IRGVRIGN-GAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLIT 343
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 213 bits (541), Expect = 2e-53
Identities = 115/301 (38%), Positives = 174/301 (57%), Gaps = 4/301 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
+LTK FS E+ A+ K+PGP+G++ F K WD+V D + + F +
Sbjct: 805 DLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKP 864
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
+N T I +IPK+ NP L+DY PI+L LYKV++K L NRL++ + S+VSDSQ+AFI
Sbjct: 865 SINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIP 924
Query: 134 GN*ILDGILIANEVVDD---ARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
G I D ++IA+EV+ +R+ K + + D KAYD V+ +L+ M F W
Sbjct: 925 GRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKW 984
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
WI + + +VL+NG P + RG+RQGDPLSP+LF+L + + L+ A +
Sbjct: 985 IGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSG 1044
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
G +G G +THLQFADD+L + + N ++++ V ++E SG K+N KSM+
Sbjct: 1045 DLRGVRIGN-GAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMI 1103
Query: 311 T 311
T
Sbjct: 1104 T 1104
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 213 bits (541), Expect = 2e-53
Identities = 115/301 (38%), Positives = 174/301 (57%), Gaps = 4/301 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
+LTK FS E+ A+ K+PGP+G++ F K WD+V D + + F +
Sbjct: 579 DLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKP 638
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
+N T I +IPK+ NP L+DY PI+L LYKV++K L NRL++ + S+VSDSQ+AFI
Sbjct: 639 SINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIP 698
Query: 134 GN*ILDGILIANEVVDD---ARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
G I D ++IA+EV+ +R+ K + + D KAYD V+ +L+ M F W
Sbjct: 699 GRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKW 758
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
WI + + +VL+NG P + RG+RQGDPLSP+LF+L + + L+ A +
Sbjct: 759 IGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSG 818
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
G +G G +THLQFADD+L + + N ++++ V ++E SG K+N KSM+
Sbjct: 819 DLRGVRIGN-GAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMI 877
Query: 311 T 311
T
Sbjct: 878 T 878
>gb|AAX96121.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1556
Score = 209 bits (533), Expect = 2e-52
Identities = 109/303 (35%), Positives = 174/303 (56%), Gaps = 1/303 (0%)
Query: 6 KLSLREAGNLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDF 65
++S+ E LTK F+ EEVK AV+ + K+PGP+G F + FW+++K+D M DF
Sbjct: 1152 QVSMEENTFLTKEFTEEEVKHAVFQMEHNKAPGPDGFPAEFYQVFWEVIKEDLMAVFRDF 1211
Query: 66 HRNGKLIKGVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVS 125
H + +N I L+PK +++ Y I L+ +KV KV+ANR+ V V+
Sbjct: 1212 HSGELPLHRLNFGIITLLPKNKEAKQIQQYRRICLLNVSFKVFTKVMANRIALVAQKVIR 1271
Query: 126 DSQSAFIKGN*ILDGILIANEVVDDARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMN 185
SQ AF+KG I++G +I +E + + + ++ ++DFEKAYD V+ +L +
Sbjct: 1272 PSQIAFLKGRNIIEGAIILHETLHEMHKKKSNGVILKLDFEKAYDKVNWNFLQQALRMKG 1331
Query: 186 FPTLWQKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQ 245
F +W KWI + + AV VN F ++GLRQGDPLSP LF L A+ +L+ +
Sbjct: 1332 FSDIWCKWIDQVVSGGSVAVKVNDEIGHFFQTKKGLRQGDPLSPILFNLVADMLAILINR 1391
Query: 246 MAGAQLFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNF 305
+ NG ++ ++ + L+ LQ+ADDT++ + + +++ VL FE +SGLK+NF
Sbjct: 1392 ARDLETLNG-VIPQLVDNGLSILQYADDTILFMDHDLVKANNLKLVLAAFERLSGLKINF 1450
Query: 306 HKS 308
HKS
Sbjct: 1451 HKS 1453
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 206 bits (524), Expect = 2e-51
Identities = 104/295 (35%), Positives = 171/295 (57%), Gaps = 4/295 (1%)
Query: 13 GNLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLI 72
G LTKPF+ EE+ A++ K+PGP+G F +R W ++K D ++ + +F G+
Sbjct: 410 GMLTKPFTDEEISDALFQIGPLKAPGPDGFPARFFQRNWGVLKRDVIEGVREFFETGEWK 469
Query: 73 KGVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFI 132
+G+N T I +IPK N P + D+ P+SL +YKV+AK L NRLR ++ ++S++QSAF+
Sbjct: 470 EGMNDTVIVMIPKTNAPVEMKDFRPVSLCNVIYKVVAKCLVNRLRPLLQEIISETQSAFV 529
Query: 133 KGN*ILDGILIANEV---VDDARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTL 189
G I D L+A E + R ++ ++D KAYD VD +LD + + F +
Sbjct: 530 PGRMITDNALVAFECFHSIHKCTRESQDFCALKLDLSKAYDRVDWGFLDGALQKLGFGNI 589
Query: 190 WQKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGA 249
W+KWI C+ + + +V +NG +E F RGLR+GDPL+P+LFL A+G + ++++
Sbjct: 590 WRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFLFIADGLSNILQRRRDE 649
Query: 250 QLFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVN 304
+ V R ++HL FADD+L+ + + ++ L L+E +G +N
Sbjct: 650 RQIQPLKVCR-SAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLIN 703
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 206 bits (523), Expect = 2e-51
Identities = 114/293 (38%), Positives = 163/293 (54%), Gaps = 4/293 (1%)
Query: 15 LTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIKG 74
L K FS EE+ A++ K+PGP+G F +R W ++KDD ++ + +F G + G
Sbjct: 1038 LCKTFSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEFFSLGTMPSG 1097
Query: 75 VNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIKG 134
VN T I LIPK PQ L D+ PISL +YK+++K L NRLR ++ +VS +QSAF+ G
Sbjct: 1098 VNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPG 1157
Query: 135 N*ILDGILIANEVVDDARR---MDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLWQ 191
I D LIA E +R + +++D KAYD VD ++L+ MV + F W
Sbjct: 1158 RLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVKLGFAHCWV 1217
Query: 192 KWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQL 251
KWI CI + AV +NG + F+ RGLRQGDPLSPFLFL A+G + L+++
Sbjct: 1218 KWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEKVDQGA 1277
Query: 252 FNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVN 304
N + R L HL FADDT + + + M+ VL + +G +N
Sbjct: 1278 MNPIHICRHAPAVL-HLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLIN 1329
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 206 bits (523), Expect = 2e-51
Identities = 114/293 (38%), Positives = 163/293 (54%), Gaps = 4/293 (1%)
Query: 15 LTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIKG 74
L K FS EE+ A++ K+PGP+G F +R W ++KDD ++ + +F G + G
Sbjct: 995 LCKTFSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEFFSLGTMPSG 1054
Query: 75 VNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIKG 134
VN T I LIPK PQ L D+ PISL +YK+++K L NRLR ++ +VS +QSAF+ G
Sbjct: 1055 VNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPG 1114
Query: 135 N*ILDGILIANEVVDDARR---MDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLWQ 191
I D LIA E +R + +++D KAYD VD ++L+ MV + F W
Sbjct: 1115 RLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVKLGFAHCWV 1174
Query: 192 KWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQL 251
KWI CI + AV +NG + F+ RGLRQGDPLSPFLFL A+G + L+++
Sbjct: 1175 KWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEKVDQGA 1234
Query: 252 FNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVN 304
N + R L HL FADDT + + + M+ VL + +G +N
Sbjct: 1235 MNPIHICRHAPAVL-HLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLIN 1286
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488322|pir||T00814 RNA-directed DNA
polymerase homolog At2g41580 - Arabidopsis thaliana
Length = 1094
Score = 202 bits (515), Expect = 2e-50
Identities = 105/301 (34%), Positives = 174/301 (56%), Gaps = 4/301 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
+LTK + +E+ +AV+ ++ +PGP+G + F +R W LVK+ + + F + G L +
Sbjct: 152 DLTKKVNEQEIYKAVFSINAESAPGPDGFTALFFQRQWPLVKNQIISDIELFFQTGILPE 211
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
N T + LIPK+ P R+ D PISL +YK+++K+L+ RL+ + +VS +QSAF+
Sbjct: 212 DWNHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLPVIVSPTQSAFVA 271
Query: 134 GN*ILDGILIANEVVDDAR---RMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
+ D I++A+E+V + R ++ K+ ++F+ D KAYD V+ +L +++ + F + W
Sbjct: 272 ERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTW 331
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
W+ C+ + +VL+NG P + RGLRQGDPLSPFLF+L E ++ Q
Sbjct: 332 INWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKIG 391
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
+G G ++ HL FADDTL+I + S L + L + +SG +N KS +
Sbjct: 392 KISGIQFNGTGP-SVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEKSAI 450
Query: 311 T 311
T
Sbjct: 451 T 451
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 201 bits (511), Expect = 6e-50
Identities = 111/304 (36%), Positives = 179/304 (58%), Gaps = 3/304 (0%)
Query: 6 KLSLREAGNLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDF 65
+LS E +L +PF+ EE+ QA+ + +PGP+G + +F + FW ++D F + L D
Sbjct: 141 RLSQEEREHLIRPFTFEEMDQALKQMKTDTAPGPDGFTVSFYRAFWPQLRDQFKEML-DL 199
Query: 66 HRNGKL-IKGVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVV 124
G+L + +N I+LIPKV + + + PI L+ +K++ K+L NRL V +V+
Sbjct: 200 LFEGRLDLWRINYGVISLIPKVKDANTIKAFRPICLLNVCFKLITKILTNRLTLVAHNVI 259
Query: 125 SDSQSAFIKGN*ILDGILIANEVVDDARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTM 184
+SQ+AFI G ILDG++I +EV+ + ++ + ++ ++DFEKAYD V +L V+
Sbjct: 260 GESQTAFIPGRFILDGVIILHEVLHEVKKTHQSGIILKLDFEKAYDKVQWSFLFDVLQKK 319
Query: 185 NFPTLWQKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMK 244
F W KWI + A+ +NG + F RG+RQGDPLSP LF + A+ + ++
Sbjct: 320 GFDDKWIKWIKSATIDGRVAININGEIDQYFKTFRGVRQGDPLSPLLFNIVADALSEILL 379
Query: 245 QMAGAQLFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVN 304
+ A G LV + + LTHLQ+ADDT++ + NV + + +L FE +SGLK+N
Sbjct: 380 KAKEAGHLEG-LVPHLVQGGLTHLQYADDTILFMTNNDQNVITTKFILHCFEAMSGLKIN 438
Query: 305 FHKS 308
+ KS
Sbjct: 439 YQKS 442
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 201 bits (510), Expect = 8e-50
Identities = 110/306 (35%), Positives = 183/306 (58%), Gaps = 16/306 (5%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
NL P + EEV++A + + K PGP+G++ ++FW+ + D + + F R+G + +
Sbjct: 423 NLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSIEE 482
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
G+N T I LIPK+ +++ D+ PISL +YKV+ K++ANRL+ ++ S++S++Q+AF+K
Sbjct: 483 GMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVK 542
Query: 134 GN*ILDGILIANEV---VDDARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
G I D ILIA+E+ + + +E + + D KAYD V+ +L+ M + F W
Sbjct: 543 GRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHW 602
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
+ I EC+ + + VL+NG P E RGLRQGDPLSP+LF++ E +L+K + A+
Sbjct: 603 IRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTE---MLVKMLQSAE 659
Query: 251 LFN---GFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEE---VSGLKVN 304
N G V R G ++HL FADD++ + +N ++ ++ + EE SG +VN
Sbjct: 660 QKNQITGLKVAR-GAPPISHLLFADDSMFYCK---VNDEALGQIIRIIEEYSLASGQRVN 715
Query: 305 FHKSML 310
+ KS +
Sbjct: 716 YLKSSI 721
>gb|AAP53939.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534700|ref|NP_921652.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 201 bits (510), Expect = 8e-50
Identities = 105/296 (35%), Positives = 165/296 (55%), Gaps = 1/296 (0%)
Query: 15 LTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIKG 74
L++ F EVK+A++ + K+PGP+G F + FWD++KDD M DFH +
Sbjct: 1143 LSESFKELEVKEAIFQMEHNKAPGPDGFPAEFYQVFWDVIKDDLMAVFCDFHEGTLPLHR 1202
Query: 75 VNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIKG 134
+ I L+PK + R+ Y PI L+ +K+ KV+ANR+ V V+ SQ+ F+ G
Sbjct: 1203 LKFGIITLLPKQKDASRIQQYRPICLLNVSFKIFTKVMANRIALVAQKVIKPSQTTFLSG 1262
Query: 135 N*ILDGILIANEVVDDARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLWQKWI 194
I++G++I +E + + + K ++ ++DFEKAYD VD K+L + F + W WI
Sbjct: 1263 RNIMEGVVILHETLHELHKKKKNGVILKLDFEKAYDKVDWKFLQQSLRMKGFSSKWCDWI 1322
Query: 195 SECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQLFNG 254
+ AV VN F +GLRQGDPLSP LF L + +L+++ F G
Sbjct: 1323 DSIVRGGSVAVKVNDEIGSYFQTRKGLRQGDPLSPILFNLVVDMLAILIQRAKDQGRFKG 1382
Query: 255 FLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
+V + + L+ LQ+ADDT++ + R ++ VL FE++S LK+NF+KS L
Sbjct: 1383 -VVPHLVDNGLSILQYADDTILFMDHDLDEARDLKLVLSTFEKLSSLKINFYKSEL 1437
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 200 bits (509), Expect = 1e-49
Identities = 108/301 (35%), Positives = 171/301 (55%), Gaps = 4/301 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
NL + + EV AV+ + +PGP+G + F ++ WDLVK + + F G L +
Sbjct: 401 NLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQ 460
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
N T I LIPK+ +PQR++D PISL LYK+++K+L RL+ + ++VS +QSAF+
Sbjct: 461 DWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVP 520
Query: 134 GN*ILDGILIANEVVDDAR---RMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
I D IL+A+E++ R R+ KE + F+ D KAYD V+ +L+ +M + F W
Sbjct: 521 QRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKW 580
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
WI C+ + +VL+NG P RG+RQGDPLSP LF+L E ++ + A
Sbjct: 581 ISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAG 640
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
G + + +V++ HL FADDTL++ + + + L + ++SG +N +KS +
Sbjct: 641 KITG-IQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAI 699
Query: 311 T 311
T
Sbjct: 700 T 700
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 200 bits (509), Expect = 1e-49
Identities = 108/301 (35%), Positives = 171/301 (55%), Gaps = 4/301 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
NL + + EV AV+ + +PGP+G + F ++ WDLVK + + F G L +
Sbjct: 422 NLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQ 481
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
N T I LIPK+ +PQR++D PISL LYK+++K+L RL+ + ++VS +QSAF+
Sbjct: 482 DWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVP 541
Query: 134 GN*ILDGILIANEVVDDAR---RMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
I D IL+A+E++ R R+ KE + F+ D KAYD V+ +L+ +M + F W
Sbjct: 542 QRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKW 601
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
WI C+ + +VL+NG P RG+RQGDPLSP LF+L E ++ + A
Sbjct: 602 ISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAG 661
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
G + + +V++ HL FADDTL++ + + + L + ++SG +N +KS +
Sbjct: 662 KITG-IQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAI 720
Query: 311 T 311
T
Sbjct: 721 T 721
>emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultivar-group)]
Length = 1285
Score = 200 bits (508), Expect = 1e-49
Identities = 107/293 (36%), Positives = 164/293 (55%), Gaps = 4/293 (1%)
Query: 15 LTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIKG 74
L + F EE+ QA++ KSPGP+G F +R W +K D + + +F ++G + +G
Sbjct: 976 LCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEG 1035
Query: 75 VNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIKG 134
VN T I LIPK + P L DY PISL +YKV++K L NRLR ++ +VS QSAFI+G
Sbjct: 1036 VNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDLVSKEQSAFIQG 1095
Query: 135 N*ILDGILIANEV---VDDARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLWQ 191
I D L+A E + ++ + +++D KAYD VD ++L++ + + F W
Sbjct: 1096 RMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLGFAHRWV 1155
Query: 192 KWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQL 251
WI C+ T + +V NG + F+ RGLRQGDPLSPFLFL A+G ++L+K+
Sbjct: 1156 SWIMSCVTTVRYSVKFNGTLLRSFAPTRGLRQGDPLSPFLFLFVADGLSLLLKEKVAQNS 1215
Query: 252 FNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVN 304
+ ++HL FADDTL+ + ++ VL + + +G +N
Sbjct: 1216 LTPLKI-CCQAPGISHLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLIN 1267
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 199 bits (507), Expect = 2e-49
Identities = 111/302 (36%), Positives = 168/302 (54%), Gaps = 5/302 (1%)
Query: 15 LTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIKG 74
L + F+ +E+ QA++ KSPGP+G F +R W +K D + + F + G + +G
Sbjct: 1158 LCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKADIIGAVRRFFQTGLMPEG 1217
Query: 75 VNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIKG 134
VN T I LIPK P L D+ PISL +YKV++K L NRLR ++ +VS QSAF++G
Sbjct: 1218 VNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDLVSVEQSAFVQG 1277
Query: 135 N*ILDGILIANE---VVDDARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLWQ 191
I D L+A E + ++ + +++D KAYD VD ++L+M M + F W
Sbjct: 1278 RMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMAMNKLGFARRWV 1337
Query: 192 KWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQL 251
WI +C+ + + V NG ++ F+ RGLRQGDPL PFLFL A+G ++L+K+
Sbjct: 1338 NWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVADGLSLLLKEKVAQNS 1397
Query: 252 FNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHK-SML 310
F V R ++HL FADDTL+ + ++ VL + +G +N K S+L
Sbjct: 1398 LTPFKVCRAAP-GISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSIL 1456
Query: 311 TG 312
G
Sbjct: 1457 MG 1458
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.344 0.156 0.540
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,045,992,156
Number of Sequences: 2540612
Number of extensions: 43601422
Number of successful extensions: 186304
Number of sequences better than 10.0: 1064
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 366
Number of HSP's that attempted gapping in prelim test: 183995
Number of HSP's gapped (non-prelim): 1345
length of query: 651
length of database: 863,360,394
effective HSP length: 135
effective length of query: 516
effective length of database: 520,377,774
effective search space: 268514931384
effective search space used: 268514931384
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 78 (34.7 bits)
Medicago: description of AC147000.3