Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147000.15 - phase: 0 /pseudo
         (485 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   102  2e-20
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    93  2e-17
emb|CAB79135.1| putative transposable element [Arabidopsis thali...    90  1e-16
gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cult...    87  2e-15
ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cu...    83  2e-14
gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis ...    79  2e-13
gb|AAK38381.1| polyprotein, putative [Arabidopsis thaliana]            78  7e-13
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...    75  4e-12
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar...    64  1e-08
ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cu...    63  2e-08
emb|CAB77896.1| putative transposon protein [Arabidopsis thalian...    62  5e-08
emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana] g...    61  9e-08
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] gi|99721|pir|...    60  1e-07
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa (japonica cultiva...    60  2e-07
emb|CAA37924.1| unnamed protein product [Arabidopsis thaliana] g...    60  2e-07
emb|CAA37917.1| reverse transcriptase [Arabidopsis thaliana] gi|...    59  3e-07
ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cu...    57  1e-06
ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sa...    56  2e-06
gb|AAP52319.1| putative retroelement [Oryza sativa (japonica cul...    55  4e-06
emb|CAE02960.2| OSJNBb0050N09.11 [Oryza sativa (japonica cultiva...    55  4e-06

>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa (japonica cultivar-group)]
          Length = 1373

 Score =  102 bits (255), Expect = 2e-20
 Identities = 103/357 (28%), Positives = 158/357 (43%), Gaps = 45/357 (12%)

Query: 1   FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNANNSTLFWDETV-**F 59
           FN  C+  GIVRH  I  TP++N +   RM+R I+ R  C++S+A  +  FW E      
Sbjct: 563 FNDYCRQEGIVRHHTIPHTPQQNGVAE-RMNRTIISRARCMLSHARMNKRFWAEAASTAC 621

Query: 60  FLIS*IDSLTLNLV*RH*KRCG---WSCSKP*KYESFWL--CPLYAHIKRTILN-QGLKL 113
           +LI+   S+ LN      K+     WS   P  Y    +  C  YAH+    L  + +K 
Sbjct: 622 YLINRSPSIPLN------KKTPIEVWS-GTPADYSQLKVFGCTAYAHVDNGKLEPRAVKC 674

Query: 114 YVFEVSLRCKRVQIWCMEKGET*VLINKDVVFKESEMFYS---------KETSS*HQP*L 164
                    K  ++W  E G+T   +++ VVF ES MF +         KE    H    
Sbjct: 675 LFLGYGSGVKGYKLWNPETGKT--FMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVE 732

Query: 165 DCEERVQFKVESLHGSTNLDAKVKDKD*NDD---TTPLFFLMENVAIRF*ISFSSSFRFK 221
             ++    +VE +H   + +  V D D +DD   T P+  L E + I       +  + K
Sbjct: 733 HVDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPI-------AQRKSK 785

Query: 222 LRTSTSLSLSSNTTLEN*L**KK*VVVSGEIDG-DEPVN*DGFVNASKSREWIASMKEEL 280
             T     L     L         +  + +++   EP      V    S  WI++M EE+
Sbjct: 786 RTTKPPKRLIEECNLSYYA-----LSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEM 840

Query: 281 SSLHKNGTWLLVNKPKRMKNMSCI*LFKLKEGVNYMD---*NSRFKARGFT*REGID 334
            SL KN TW +V  PK+ K +SC  +FK KEG++  +     +R  ARG++   G+D
Sbjct: 841 QSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVD 897



 Score = 47.0 bits (110), Expect = 0.001
 Identities = 25/53 (47%), Positives = 33/53 (62%)

Query: 416  YMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILRDISKG 468
            Y++L +DDMLIA   K E  K+K +L  EF MKD+ +A  IL  +I RD   G
Sbjct: 1010 YLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSG 1062


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            (japonica cultivar-group)]
          Length = 2340

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 99/346 (28%), Positives = 157/346 (44%), Gaps = 32/346 (9%)

Query: 1    FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNANNSTLFWDETV**F- 59
            F   CK  GIVRH  +  TP++N +   RM+R I+ +  CL+SNA     FW E V    
Sbjct: 778  FKSYCKSEGIVRHYTVPHTPQQNGVAE-RMNRTIISKARCLLSNAGLPKQFWAEAVSTAC 836

Query: 60   FLIS*IDSLTLNLV*RH*KRCG---WSCSKP*KYESFWL--CPLYAHIKRTILN-QGLKL 113
            +LI+   S  ++      K+     WS S P  Y    +  C  YAH+    L  + +K 
Sbjct: 837  YLINRSPSYAID------KKTPIEVWSGS-PANYSDLRVFGCTAYAHVDNGKLEPRAIKC 889

Query: 114  YVFEVSLRCKRVQIWCMEKGET*VLINKDVVFKESEMFYSKETSS*HQP*LDCEERVQFK 173
                     K  ++WC E  +  V+I+++VVF ES M + K +++     ++ +E+   +
Sbjct: 890  IFLGYPSGVKGYKLWCPETKK--VVISRNVVFHESVMLHDKPSTNVP---VESQEKASVQ 944

Query: 174  VESLHGSTNLDAKVKDKD*NDDTTPLFFLMENVAIRF*ISFSSSFRFKLRTSTSLSLSSN 233
            VE L  S +   K +D   N D   +     ++  +      +  R K            
Sbjct: 945  VEHLISSGHAPEK-EDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEE 1003

Query: 234  TTLEN*L**KK*VVVSGEIDGD-EPVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLV 292
              +         + V+ EI+G+ EP      + +     WI +M +E+ SL KN TW LV
Sbjct: 1004 ANIVAYA-----LSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELV 1058

Query: 293  NKPKRMKNMSCI*LFKLKEGVNYMD*NSRFKAR----GFT*REGID 334
              PK  K + C  +FK KEG++  D  +R+KAR    G++   GID
Sbjct: 1059 KLPKEKKPIRCKWIFKRKEGISSSD-EARYKARLIAKGYSQIPGID 1103



 Score = 46.2 bits (108), Expect = 0.002
 Identities = 24/48 (50%), Positives = 31/48 (64%)

Query: 416  YMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILR 463
            Y++L +DDMLIA   K E  K+K  L  EF+MKD+ AA  IL  +I R
Sbjct: 1216 YLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITR 1263


>emb|CAB79135.1| putative transposable element [Arabidopsis thaliana]
           gi|3402755|emb|CAA20201.1| putative transposable element
           [Arabidopsis thaliana] gi|7444415|pir||T05178
           hypothetical protein T6K22.90 - Arabidopsis thaliana
          Length = 1308

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 96/353 (27%), Positives = 165/353 (46%), Gaps = 38/353 (10%)

Query: 1   FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNANNSTLFWDETV**FF 60
           F++ CK +GI RH+    TP++N +   RM+R +ME+  CL++ +    +FW E      
Sbjct: 567 FDEFCKQNGIERHRTCTYTPQQNGVAK-RMNRTLMEKVRCLLNESGLEEVFWAEAAATAA 625

Query: 61  LIS*IDSLTLNLV*RH*KRCGWSCSKP*-KYESFWLCPLYAHIKRTILN-QGLKLYVFEV 118
            +  ++    + V  +     W   KP  K+   + C  Y H+ +  L  + LK      
Sbjct: 626 YL--VNRSPASAVDHNVPEELWLDKKPGYKHLRRFGCIAYVHLDQGKLKPRALKGVFLGY 683

Query: 119 SLRCKRVQIWCMEKGET*VLINKDVVFKESEMFYSKETSS*H--QP*LDCEERVQFKVE- 175
               K  ++W +++ +   +I++++VF E++++     SS    +   D E   +F+V  
Sbjct: 684 PQGTKGYKVWLLDEEKC--VISRNIVFNENQVYKDIRESSEQSVKDISDLEGYNEFQVSV 741

Query: 176 ------SLHGSTNLDAKVKDKD*NDDTTPLFFLMENVAIRF*ISFSSSFRFKLRTSTS-- 227
                 S  G   ++   ++ D  +  T      E +     +S   S R + R + +  
Sbjct: 742 KEHGECSKTGGVTIEEIDQESDSENSVT-----QEPLIASIDLSNYQSARDRERRAPNPP 796

Query: 228 LSLSSNTTLEN*L**KK*VVVSGEIDGDEPVN*DGFVNASKSREWI---ASMKEELSSLH 284
             L+  T     L      V++ EI+ +EP     + +A K + WI     MKEE+ SL 
Sbjct: 797 QKLADYTHFALAL------VMAEEIESEEP---QCYHDAKKDKHWIKWNGGMKEEIDSLL 847

Query: 285 KNGTWLLVNKPKRMKNMSCI*LFKLKEGVNYMD---*NSRFKARGFT*REGID 334
           KNGTW +V  PK  K +SC  LFKLK G+  ++     +R  ARGFT ++GID
Sbjct: 848 KNGTWDIVEWPKEQKVISCRWLFKLKPGIPGVEAQRYKARLVARGFTQQKGID 900



 Score = 52.0 bits (123), Expect = 4e-05
 Identities = 28/65 (43%), Positives = 40/65 (61%)

Query: 405  YLNETMHKYVDYMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILRD 464
            Y+ E       Y++L +DDML+A   K E  K+K  L ++F+MKDM AAS IL   I+R+
Sbjct: 1003 YVKEVNPGEFVYLLLYVDDMLLAAKSKSEISKLKEALSLKFEMKDMGAASRILGIDIIRN 1062

Query: 465  ISKGT 469
              +GT
Sbjct: 1063 RKEGT 1067


>gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
           gi|37535452|ref|NP_922028.1| putative polyprotein [Oryza
           sativa (japonica cultivar-group)]
           gi|22094359|gb|AAM91886.1| putative polyprotein [Oryza
           sativa (japonica cultivar-group)]
          Length = 1280

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 98/361 (27%), Positives = 156/361 (43%), Gaps = 62/361 (17%)

Query: 1   FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNANNSTLFWDETV**FF 60
           F   CK  GIV H  +  TP++N +   RM+  I+ +  C++SNA+    FW E V    
Sbjct: 606 FKSYCKSEGIVHHYTVPHTPQQNGVAE-RMNMAIISKARCMLSNADLPKQFWAEAV---- 660

Query: 61  LIS*IDSLTLNLV*RH*KRCG--------WSCSKP*KYESFWL--CPLYAHIKRTILN-Q 109
                 S T  L+ R              WS S P  Y    +  C  YAH+    L  +
Sbjct: 661 ------STTCYLINRSPSYATDKKTPIEVWSGS-PANYSDLRVFGCTAYAHVDNGKLEPR 713

Query: 110 GLKLYVFEVSLRCKRVQIWCMEKGET*VLINKDVVFKESEMFYSKETSS*HQP*LDCEER 169
            +K          K  ++WC E  +  V+I+++VVF ES + + K +++     ++ +E+
Sbjct: 714 AIKCIFLGYPSGVKGYKLWCPETKK--VVISRNVVFHESVILHDKPSTN---VPVESQEK 768

Query: 170 VQFKVESLHGSTNLDAKVKDKD*NDDTTPLFFLMENVAIRF*IS-FSSSFRFKLRTSTSL 228
              +VE L  S +   K                 ENVAI         S    ++ S+  
Sbjct: 769 ASVQVEHLISSGHAPEK-----------------ENVAINQDAPVIEDSDSSIVQQSSKR 811

Query: 229 SLSSNTTLEN*L**KK*V----------VVSGEIDGD-EPVN*DGFVNASKSREWIASMK 277
           S++ +    N    ++ +           V+ EI+G+ EP      + +     WI +M 
Sbjct: 812 SIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMH 871

Query: 278 EELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLKEGVNYMD*NSRFKAR----GFT*REGI 333
           +E+ SL KN TW  V  PK  K + C  +FK KEG++  D  +R+KAR    G++   GI
Sbjct: 872 DEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSD-EARYKARLVAKGYSQIPGI 930

Query: 334 D 334
           D
Sbjct: 931 D 931



 Score = 46.2 bits (108), Expect = 0.002
 Identities = 25/53 (47%), Positives = 32/53 (60%)

Query: 416  YMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILRDISKG 468
            Y++L +DDMLIA   K E  K+K  L  EF MKD+ AA  IL  +I R+   G
Sbjct: 1044 YLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRERHSG 1096


>ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
           gi|48475213|gb|AAT44282.1| putative polyprotein [Oryza
           sativa (japonica cultivar-group)]
          Length = 1243

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 99/358 (27%), Positives = 158/358 (43%), Gaps = 56/358 (15%)

Query: 1   FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNANNSTLFWDETV**F- 59
           F   CK  GIV H     TP++N +   RM+R I+ +  C++SNA     FW E V    
Sbjct: 543 FKSYCKSEGIVCHYTAPHTPQQNDVAE-RMNRTIISKARCMLSNAGLPKQFWAEAVSTAC 601

Query: 60  FLIS*-----IDSLTLNLV*RH*KRCGWSCSKP*KYESFWL--CPLYAHIKRTILN-QGL 111
           +LI+      ID  T   V        WS S P  Y    +  C  YAH+    L  + +
Sbjct: 602 YLINRSPGYAIDKKTPIEV--------WSGS-PTNYSDLRVFGCTAYAHVDNGKLEPRAI 652

Query: 112 KLYVFEVSLRCKRVQIWCMEKGET*VLINKDVVFKESEMFYSKETSS*HQP*LDCEERVQ 171
           K      +   K  ++WC E  +  V+I+++VVF ES + + K +++     ++ +E+  
Sbjct: 653 KCIFLGYASGVKGYKLWCPETKK--VVISRNVVFHESVILHDKPSTNVP---VESQEKAS 707

Query: 172 FKVESLHGSTNLDAKVKDKD*NDDTTPLFFLMENVAIRF*ISFSSSFRFKLRTSTSLSLS 231
            +VE L  S +   K +D   N D   +                 S    +  S   S++
Sbjct: 708 VQVEHLISSGHAPEK-EDVAINQDAPVI---------------EDSDSSIVHQSPKRSIA 751

Query: 232 SNTTLEN*L**KK*VV----------VSGEIDGD-EPVN*DGFVNASKSREWIASMKEEL 280
            +    N    ++ +           V+ +I+G+ EP      + +     WI +M +E+
Sbjct: 752 KDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEM 811

Query: 281 SSLHKNGTWLLVNKPKRMKNMSCI*LFKLKEGVNYMD*NSRFKAR----GFT*REGID 334
            SL KN TW LV  PK  K + C  +FK KEG++  D  +R+KAR    G++   GID
Sbjct: 812 ESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSD-EARYKARLVAKGYSQIPGID 868



 Score = 50.1 bits (118), Expect = 2e-04
 Identities = 27/65 (41%), Positives = 38/65 (57%)

Query: 404  CYLNETMHKYVDYMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILR 463
            C   + +   V Y++L +DDMLIA   K E +K+K  L  EF+MKD+ AA  IL  +I R
Sbjct: 969  CVYLKVVDGSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITR 1028

Query: 464  DISKG 468
            +   G
Sbjct: 1029 ERHSG 1033


>gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
           gi|25301707|pir||E86490 hypothetical protein F28L22.3 -
           Arabidopsis thaliana
          Length = 1356

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 92/370 (24%), Positives = 156/370 (41%), Gaps = 62/370 (16%)

Query: 1   FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNANNSTLFWDETV**FF 60
           F+  CK+ GI RH+    TP++N +   RM+R IME+  CL++ +    +FW E      
Sbjct: 576 FDSYCKEHGIERHRTCTYTPQQNGVAE-RMNRTIMEKVRCLLNKSGVEEVFWAEAA---- 630

Query: 61  LIS*IDSLTLNLV*RH*KRCGWSCSKP*KYESFWLC--PLYAHIKR------------TI 106
                 +    L+     R   S       E  WL   P Y H+++             +
Sbjct: 631 ------ATAAYLI----NRSPASAINHNVPEEMWLNRKPGYKHLRKFGSIAYVHQDQGKL 680

Query: 107 LNQGLKLYVFEVSLRCKRVQIWCMEKGET*VLINKDVVFKESEMFYS-----KETSS*HQ 161
             + LK +        K  ++W +E+ +   +I+++VVF+ES ++        +T + +Q
Sbjct: 681 KPRALKGFFLGYPAGTKGYKVWLLEEEKC--VISRNVVFQESVVYRDLKVKEDDTDNLNQ 738

Query: 162 P*LDCEERVQFKVESLHGSTNLDAKVKDKD*---------NDDTTPLFFLMENVAIRF*I 212
                 E  Q K     GS  +     D +          +++        +    R  +
Sbjct: 739 KETTSSEVEQNKFAEASGSGGVIQLQSDSEPITEGEQSSDSEEEVEYSEKTQETPKRTGL 798

Query: 213 SFSSSFRFKLRTS----TSLSLSSNTTLEN*L**KK*VVVSGEIDGDEPVN*DGFVNASK 268
           +     R ++R +    T  +  S+ T          +VV       EP +    + +  
Sbjct: 799 TTYKLARDRVRRNINPPTRFTEESSVTFA--------LVVVENCIVQEPQSYQEAMESQD 850

Query: 269 SREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLKEGVNYMD*NSRFKAR--- 325
             +W  +  +E+ SL KNGTW LV+KPK  K + C  LFKLK G+  ++  +RFKAR   
Sbjct: 851 CEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVE-PTRFKARLVA 909

Query: 326 -GFT*REGID 334
            G+T REG+D
Sbjct: 910 KGYTQREGVD 919



 Score = 47.8 bits (112), Expect = 8e-04
 Identities = 28/58 (48%), Positives = 36/58 (61%), Gaps = 1/58 (1%)

Query: 411  HKYVDYMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILRDISKG 468
            H ++ Y++L +DDMLIA   K E ++VK  L  EF+MKDM  AS IL   I RD   G
Sbjct: 1029 HDFI-YLLLYVDDMLIAGASKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRDRKGG 1085


>gb|AAK38381.1| polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score = 77.8 bits (190), Expect = 7e-13
 Identities = 96/368 (26%), Positives = 164/368 (44%), Gaps = 63/368 (17%)

Query: 1   FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNANNSTLFWDETV**FF 60
           F+  CK  GI RHK    TP++N +   RM+R +ME+  CL++ +     FW E      
Sbjct: 259 FDSYCKKYGIERHKTCTYTPQQNGVAE-RMNRTVMEKVRCLLNESGLEEEFWAEV----- 312

Query: 61  LIS*IDSLTLNLV*RH*KRCGWSCSKP*KYESFWLC--PLYAHIKR------TILNQG-- 110
                 + T   +           + P   E  WL   P Y H++R        ++QG  
Sbjct: 313 ------ATTAVYIINRSPSAAIDHNVP---EELWLNRKPGYKHLRRLRAVAYVHVDQGKL 363

Query: 111 ----LKLYVFEVSLRCKRVQIWCMEKGET*VLINKDVVFKESEMFYS---KETSS*HQP* 163
               +K          K  ++W +E+ +   +I+++V+F+E  ++     KET    +  
Sbjct: 364 KPRAIKGIFIGYPSGTKGYKVWLLEEQKC--VISRNVIFQEEVVYKDLNDKETVVKKE-- 419

Query: 164 LDCEERVQF----------KVESLHGSTNLDAKVKDKD*NDDTTPLFFLMENVAIRF*IS 213
              + R Q           +V    G T+++ + ++ D ND+  P      +  +    S
Sbjct: 420 ---DIRTQTDNHLVISKTKEVSDQGGVTHIE-ECEESDENDEQEPETVNETDPTVESEGS 475

Query: 214 FSSSFRFKLRTSTSLSLSSNTTLEN*L**KK*VVVSGEIDGDEPVN*DGFVNASKSREWI 273
            ++    K R    ++  +  T E+ +     +VV   +  +EP   + +  A++ +EW+
Sbjct: 476 LANYQLAKDRVRRQINPPARFTEESGV--AFALVVVESLSLEEP---ESYQEATQDKEWL 530

Query: 274 A---SMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLKEGVNYMD*NSRFKAR----G 326
               +  EE+ SL KNGTW LV+KP   K + C  LFKLK G+  ++   RFKAR    G
Sbjct: 531 KWKNATHEEMDSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGVE-PVRFKARLVAKG 589

Query: 327 FT*REGID 334
           +T REG+D
Sbjct: 590 YTQREGVD 597



 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 30/64 (46%), Positives = 40/64 (61%), Gaps = 1/64 (1%)

Query: 405 YLNETMHKYVDYMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILRD 464
           Y+ +    +V Y++L +DDMLIA   K E + +K  L +EF+MKDM  AS IL K I RD
Sbjct: 700 YVKQVEQGFV-YLLLYVDDMLIAGKSKAEVNMIKEQLSVEFEMKDMGPASRILGKDITRD 758

Query: 465 ISKG 468
             KG
Sbjct: 759 RKKG 762


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
           gi|25301680|pir||C84532 copia-like retroelement pol
           polyprotein [imported] - Arabidopsis thaliana
          Length = 1166

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 91/387 (23%), Positives = 168/387 (42%), Gaps = 70/387 (18%)

Query: 1   FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNANNSTLFWDETV**FF 60
           F+ +CK+ GI RH+    TP++N +   RM++ IM+    +++    S  FW E      
Sbjct: 460 FDNLCKEDGIKRHRTCTYTPQQNGVSE-RMNKTIMDIVRSMLAETGMSQEFWAEAT--ST 516

Query: 61  LIS*IDSLTLNLV*RH*KRCGWSCSKP*-KYESFWLCPLYAHIKRTILNQGLKLYVFEVS 119
            +  I+    + +        W+ +KP   +   + C  Y H+ +   +      VF + 
Sbjct: 517 AVYLINRTPNSFIGFKLPEEVWTGTKPDLSHLRRFGCSAYVHVTQDKTSPRAVKGVF-MG 575

Query: 120 LRC--KRVQIWCMEKGET*VLINKDVVFKESEMFYS---------KETSS*HQP*LDCEE 168
             C  K  ++W  ++G+     +++VVF E+E++           +E    ++      +
Sbjct: 576 YPCGIKGYRVWLPKEGKC--TTSRNVVFNETELYKDTLSSADERKEEAEKEYKKLKKARK 633

Query: 169 RVQFKVESLHG-------------------------STNLDAKVKDKD*----NDDTTPL 199
           RV F  + L G                         S NL+    +++     N+ +   
Sbjct: 634 RVSFSHDLLRGPSTSCCDLDDSSSQGGETSSSSSESSENLEESEMNEEVVGSENEQSLDD 693

Query: 200 FFLMENVAIRF*ISFSSSFRFKLRTSTSLSLSSNTTLEN*L**KK*VVVSGEIDGDEPVN 259
           + L  ++  R  I   S  RF+     + +L++   LE                 +EP +
Sbjct: 694 YLLARDMKRRSNIRPPS--RFEDEDFVAYALATAEDLEE----------------EEPKS 735

Query: 260 *DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLKEGVNYMD*N 319
            +  + +SK ++W  +MKEE+ S  K+ TW L+ KP++ K + C  +FKLK G+  ++  
Sbjct: 736 YEEALKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGVE-K 794

Query: 320 SRFKAR----GFT*REGID*CENYFLV 342
            R+KAR    GF+ +EGID  E + LV
Sbjct: 795 QRYKARLVAKGFSQQEGIDYNEVFSLV 821


>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 348

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 35/96 (36%), Positives = 61/96 (63%), Gaps = 5/96 (5%)

Query: 251 EIDGDEPVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLK 310
           +++ +EP + +  +  SK ++W ++MKEE+ S  K+ TW L+ KP++ K + C  +FKLK
Sbjct: 199 DLEIEEPKSYEEAMKRSKRKQWESAMKEEMDSHQKSHTWDLIEKPEKQKLIGCKWIFKLK 258

Query: 311 EGVNYMD*NSRFK----ARGFT*REGID*CENYFLV 342
            G+  ++   R+K    A+GF+ +EGID  E + LV
Sbjct: 259 PGIPGLE-KQRYKVRLVAKGFSQQEGIDYNEVFSLV 293


>ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
           gi|48475188|gb|AAT44257.1| putative polyprotein [Oryza
           sativa (japonica cultivar-group)]
          Length = 1211

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 68/256 (26%), Positives = 115/256 (44%), Gaps = 40/256 (15%)

Query: 96  CPLYAHIKRTILN-QGLKLYVFEVSLRCKRVQIWCMEKGET*VLINKDVVFKESEMFYSK 154
           C  YAH+    L  + +K          K  ++WC +  +  V+I+++VVF ES M + K
Sbjct: 543 CTAYAHVDNGKLEPRAIKCIFLGYPSGVKDYKLWCPKTKK--VVISRNVVFHESVMLHDK 600

Query: 155 ETSS*HQP*LDCEERVQFKVESLHGSTNLDAKVKDKD*NDDTTPLFFLMENVAIRF*IS- 213
            +++     ++ +E+   +VE L  S +   K                 E+VAI    S 
Sbjct: 601 PSTNVP---VESQEKASVQVEHLISSGHAPEK-----------------EDVAINQDASV 640

Query: 214 FSSSFRFKLRTSTSLSLSSNTTLEN*L**KK*VV----------VSGEIDGD-EPVN*DG 262
              S    ++ S   S++ +    N    ++ +           V+ EI+G+ EP     
Sbjct: 641 IEDSDSSAVQQSPKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSE 700

Query: 263 FVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLKEGVNYMD*NSRF 322
            + +     WI +M +E+ SL KN TW LV  PK  K + C  +FK K+G++  D  +R+
Sbjct: 701 AIVSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPSD-EARY 759

Query: 323 KAR----GFT*REGID 334
           KAR    G++   GID
Sbjct: 760 KARLVAKGYSQIPGID 775



 Score = 49.3 bits (116), Expect = 3e-04
 Identities = 25/53 (47%), Positives = 34/53 (63%)

Query: 416 YMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILRDISKG 468
           Y++L +DDMLIA   K E +K+K  L  EF+MKD+ AA  IL  +I R+   G
Sbjct: 888 YLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSG 940


>emb|CAB77896.1| putative transposon protein [Arabidopsis thaliana]
           gi|3377856|gb|AAC28238.1| contains similarity to reverse
           trancriptase (Pfam: rvt.hmm, score: 19.54) and CCHC-type
           zinc fingers (Pfam: zf-CCHC.hmm, score: 12.35)
           [Arabidopsis thaliana] gi|7487467|pir||T01811
           hypothetical protein T27D20.5 - Arabidopsis thaliana
          Length = 1104

 Score = 61.6 bits (148), Expect = 5e-08
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 246 VVVSGEIDGDEPVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI* 305
           +V++ E++ +EPV            +W   M EE+ SL KN TW +V+KPK  K +SC  
Sbjct: 664 LVMAEEVESEEPVCFHDVKEDKDWEKWHGGMIEEMDSLLKNATWDIVDKPKNQKVISCHW 723

Query: 306 LFKLK---EGVNYMD*NSRFKARGFT*REGID 334
           L+K K    GV      +R  ARGF+ REGID
Sbjct: 724 LYKKKLGIPGVELPRYKARLVARGFSHREGID 755


>emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana] gi|99730|pir||S23315
           hypothetical protein 3 - Arabidopsis thaliana
           retrotransposon Ta1-2 (strain Kashmir) (fragment)
          Length = 494

 Score = 60.8 bits (146), Expect = 9e-08
 Identities = 32/83 (38%), Positives = 51/83 (60%), Gaps = 3/83 (3%)

Query: 255 DEPVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLKEGVN 314
           +EP +     +  + ++W  +  EE+ SL KNGTW+LV+KPK  K + C  LFK+K G+ 
Sbjct: 69  EEPQSYQEATSNKEWKKWKLATHEEMDSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIP 128

Query: 315 YMD---*NSRFKARGFT*REGID 334
            ++     +R  A+G+T REG+D
Sbjct: 129 GVEPVRYKARLVAKGYTQREGVD 151



 Score = 52.0 bits (123), Expect = 4e-05
 Identities = 28/53 (52%), Positives = 35/53 (65%)

Query: 416 YMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILRDISKG 468
           Y++L +DDMLIA   K E +KVK  L +EF+MKDM  AS IL   I+RD   G
Sbjct: 265 YLLLYVDDMLIAGKSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDRKNG 317


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana] gi|99721|pir||S05465
           retrovirus-related polyprotein - Arabidopsis thaliana
           retrotransposon Ta1-3
          Length = 1291

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 35/91 (38%), Positives = 54/91 (58%), Gaps = 3/91 (3%)

Query: 255 DEPVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLKE--- 311
           +EP +     +  + ++W  +  EE+ SL KNGTW+LV+KP+  K + C  LFKLK    
Sbjct: 844 EEPQSYQEATSDKEWKKWKLATHEEMDSLIKNGTWVLVDKPQNRKIIGCRWLFKLKSGSP 903

Query: 312 GVNYMD*NSRFKARGFT*REGID*CENYFLV 342
           GV  +   ++  A+G+T REG+D  E + LV
Sbjct: 904 GVEPVRYKAQLVAKGYTHREGVDYQEIFALV 934



 Score = 53.9 bits (128), Expect = 1e-05
 Identities = 29/64 (45%), Positives = 40/64 (62%)

Query: 405  YLNETMHKYVDYMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILRD 464
            Y+ +   +   Y++L +DDMLIA   K E +KVK  L +EF+MKDM  AS IL   I+RD
Sbjct: 1029 YVKQVSEQEHLYLLLYVDDMLIAGKSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRD 1088

Query: 465  ISKG 468
            +  G
Sbjct: 1089 MKNG 1092



 Score = 43.1 bits (100), Expect = 0.019
 Identities = 21/54 (38%), Positives = 32/54 (58%), Gaps = 1/54 (1%)

Query: 1   FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNANNSTLFWDE 54
           F+  CK+ GI RHK    TP++N +   RM+R IME+  C+++ +     FW E
Sbjct: 586 FDAYCKEHGIERHKTCTYTPQQNGVAE-RMNRTIMEKVRCMLNESGLGEEFWAE 638


>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa (japonica cultivar-group)]
           gi|50930401|ref|XP_474728.1| OSJNBb0013J13.11 [Oryza
           sativa (japonica cultivar-group)]
          Length = 576

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 35/83 (42%), Positives = 49/83 (58%), Gaps = 5/83 (6%)

Query: 256 EPVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLKEGVNY 315
           EP      V +     WI++M+EE+ SL KNGTW LV+ PK+ K + C  +FK KEG++ 
Sbjct: 138 EPATYTEAVVSGDRENWISAMQEEMQSLEKNGTWKLVHLPKQKKPVHCKWIFKRKEGLSP 197

Query: 316 MD*NSRFKAR----GFT*REGID 334
            +   RFKAR    GF+   G+D
Sbjct: 198 SE-PPRFKARLVAKGFSQIAGVD 219



 Score = 49.3 bits (116), Expect = 3e-04
 Identities = 26/53 (49%), Positives = 34/53 (64%)

Query: 416 YMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILRDISKG 468
           Y++L +DDMLIA   KE+   +K  L  EF MKD+ AA  IL  +I RDI+ G
Sbjct: 332 YLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDINFG 384


>emb|CAA37924.1| unnamed protein product [Arabidopsis thaliana] gi|99719|pir||S23319
           hypothetical protein 2 - Arabidopsis thaliana
           retrotransposon Ta1-2 (strain Landsberg) (fragment)
          Length = 1084

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/83 (38%), Positives = 51/83 (60%), Gaps = 3/83 (3%)

Query: 255 DEPVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLKEGVN 314
           +EP +     +  + ++W  +  EE +SL KNGTW+LV+KPK  K + C  LFK+K G+ 
Sbjct: 744 EEPQSYQEATSDKEWKKWKLATHEEKNSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIP 803

Query: 315 YMD---*NSRFKARGFT*REGID 334
            ++     +R  A+G+T REG+D
Sbjct: 804 GVEPVRYKARLVAKGYTQREGVD 826



 Score = 46.6 bits (109), Expect = 0.002
 Identities = 27/53 (50%), Positives = 35/53 (65%), Gaps = 1/53 (1%)

Query: 416 YMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILRDISKG 468
           Y++L +DDMLIA   K E +KV+  L +EF+MKDM  AS IL   I+RD   G
Sbjct: 940 YLLLYVDDMLIAGKSKSEINKVE-QLSMEFEMKDMGPASRILGIDIIRDRKNG 991



 Score = 42.0 bits (97), Expect = 0.043
 Identities = 21/54 (38%), Positives = 31/54 (56%), Gaps = 1/54 (1%)

Query: 1   FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNANNSTLFWDE 54
           F+  CKD GI RH     TP++N +   RM+R IME+  C+++ +     FW E
Sbjct: 486 FDAYCKDHGIERHMTCTYTPQQNGVAD-RMNRTIMEKVRCMLNESGLGEEFWAE 538


>emb|CAA37917.1| reverse transcriptase [Arabidopsis thaliana] gi|99755|pir||S23312
           retrovirus-related polyprotein KAS-1 - Arabidopsis
           thaliana retrotransposon Ta1 (fragment)
          Length = 587

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 255 DEPVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLKEGVN 314
           +EP +     +  + ++W  +  EE+ SL KNGTW+LV+KP+  K + C  LFK+K G+ 
Sbjct: 68  EEPQSYQEATSDKEWKKWKLATHEEMDSLIKNGTWVLVDKPQDRKIIGCRWLFKMKSGIP 127

Query: 315 YMD---*NSRFKARGFT*REGID 334
            ++     +R  A+G+T REG+D
Sbjct: 128 GVEPVRYKARLVAKGYTQREGVD 150



 Score = 52.0 bits (123), Expect = 4e-05
 Identities = 29/64 (45%), Positives = 39/64 (60%)

Query: 405 YLNETMHKYVDYMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILRD 464
           Y+ +   +   Y++L +DDMLIA   K E +KVK  L +EF+MKDM  AS IL   I+RD
Sbjct: 253 YVKQVTEQEHLYLLLYVDDMLIAGKNKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRD 312

Query: 465 ISKG 468
              G
Sbjct: 313 RKNG 316


>ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
           gi|53370655|gb|AAU89150.1| integrase core domain
           containing protein [Oryza sativa (japonica
           cultivar-group)] gi|40538906|gb|AAR87163.1| putative
           polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1322

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 33/83 (39%), Positives = 50/83 (59%), Gaps = 5/83 (6%)

Query: 256 EPVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLKEGVNY 315
           EP      V +    +WI++++EE+ SL KNGTW LV+ PK+ K + C  +FK KEG++ 
Sbjct: 805 EPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSP 864

Query: 316 MD*NSRFK----ARGFT*REGID 334
            +   RFK    A+GF+   G+D
Sbjct: 865 SE-PPRFKVRLVAKGFSQIAGVD 886



 Score = 51.6 bits (122), Expect = 5e-05
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%)

Query: 1   FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNANNSTLFWDETV-**F 59
           F+  C+  GIVRH  I  TP++N +   RM+R I+ +  C++SNA  +  FW E      
Sbjct: 564 FDDYCRKEGIVRHHTIPYTPQQNGVAE-RMNRTIISKARCMLSNARMNKRFWAEAANTAC 622

Query: 60  FLIS*IDSLTLNLV*RH*KRCG---WSCSKP*KYESFWL--CPLYAHIKRTILN-QGLKL 113
           +LI+   S+ LN      K+     WS   P  Y    +  C  YAH+    L  + +K 
Sbjct: 623 YLINRSPSIPLN------KKTPIEIWS-GMPADYSQLRVFGCTAYAHVDNGKLEPRAIKC 675

Query: 114 YVFEVSLRCKRVQIWCMEKGET*VLINKDVVFKESEMF 151
                    K  ++W  E  +T   ++++V+F E  MF
Sbjct: 676 LFLGYGSGVKGYKLWNPETNKT--FMSRNVIFNEFVMF 711



 Score = 47.8 bits (112), Expect = 8e-04
 Identities = 25/53 (47%), Positives = 33/53 (62%)

Query: 416  YMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILRDISKG 468
            Y++L +DDMLIA   KE+   +K  L  EF MKD+ AA  IL  +I RD + G
Sbjct: 999  YLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSG 1051


>ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sativa]
           gi|14029020|gb|AAK52561.1| Putative retroelement pol
           polyprotein [Oryza sativa]
          Length = 1326

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 30/69 (43%), Positives = 43/69 (61%), Gaps = 1/69 (1%)

Query: 256 EPVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLKEGVNY 315
           EP      V +    +WI++M+EE+ SL KNGTW LV+ PK+ K + C  +FK KEG++ 
Sbjct: 773 EPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSS 832

Query: 316 MD*NSRFKA 324
            +   RFKA
Sbjct: 833 SE-PPRFKA 840



 Score = 54.7 bits (130), Expect = 6e-06
 Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 17/158 (10%)

Query: 1   FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNANNSTLFWDETV-**F 59
           F+  C+  GIVRH  I  TP++N +   RM+R I+ +  C++SNA  +  FW E      
Sbjct: 564 FDDYCRKEGIVRHHTIPYTPQQNGVAE-RMNRTIISKARCMLSNARMNKRFWAEAANTAC 622

Query: 60  FLIS*IDSLTLNLV*RH*KRCG---WSCSKP*KYESFWL--CPLYAHIKRTILN-QGLKL 113
           +LI+   S+ LN      K+     WS   P  Y    +  C  YAH+    L  + +K 
Sbjct: 623 YLINRSPSIPLN------KKTPIEVWS-GMPADYSQLRVFGCTAYAHVDNGKLEPRAIKC 675

Query: 114 YVFEVSLRCKRVQIWCMEKGET*VLINKDVVFKESEMF 151
                    KR ++W  E  +T   + + VVF +S MF
Sbjct: 676 LFLGYGSGVKRYKLWNPETNKT--FMRRSVVFNKSVMF 711



 Score = 49.3 bits (116), Expect = 3e-04
 Identities = 26/53 (49%), Positives = 33/53 (62%)

Query: 416 YMILKIDDMLIACNIKEEFDKVKVML*IEFQMKDMRAAS*ILAKKILRDISKG 468
           Y++L +DDMLIA   KE+   +K  L  EF MKD+ AA  IL  KI RD + G
Sbjct: 910 YLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMKITRDRNSG 962


>gb|AAP52319.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
           gi|37531460|ref|NP_920032.1| putative retroelement
           [Oryza sativa (japonica cultivar-group)]
           gi|22655781|gb|AAN04198.1| Putative retroelement [Oryza
           sativa (japonica cultivar-group)]
           gi|19881610|gb|AAM01011.1| Putative retroelement [Oryza
           sativa]
          Length = 521

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 255 DEPVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLK-EGV 313
           D+P + +  + +++S EW+ +MK+E+  +  N  W L   PK  K + C  ++K K +  
Sbjct: 403 DDPTSYEEAMRSARSSEWLEAMKDEIKLMKLNNVWDLEEIPKEAKTVGCKWVYKTKYDSR 462

Query: 314 NYMD-*NSRFKARGFT*REGID*CENYFLV 342
            +M+   +R  A+GFT REGID  E + LV
Sbjct: 463 GHMEKFKARLVAKGFTQREGIDYNETFSLV 492


>emb|CAE02960.2| OSJNBb0050N09.11 [Oryza sativa (japonica cultivar-group)]
           gi|50930093|ref|XP_474574.1| OSJNBb0050N09.11 [Oryza
           sativa (japonica cultivar-group)]
          Length = 1405

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 31/87 (35%), Positives = 48/87 (54%), Gaps = 2/87 (2%)

Query: 255 DEPVN*DGFVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLK--EG 312
           D+P + +  + +++S EW+ SMK+E+ S+  N  W L   PK  K + C  ++K K    
Sbjct: 884 DDPTSYEEAMRSARSSEWLESMKDEMESMKLNDVWDLEEIPKGAKTVGCKWVYKTKYDSR 943

Query: 313 VNYMD*NSRFKARGFT*REGID*CENY 339
            N     +R  A+GFT REGID  E +
Sbjct: 944 GNIEKFKARLVAKGFTQREGIDYNETF 970


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.361    0.161    0.572 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,542,173
Number of Sequences: 2540612
Number of extensions: 20568946
Number of successful extensions: 72266
Number of sequences better than 10.0: 433
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 224
Number of HSP's that attempted gapping in prelim test: 71330
Number of HSP's gapped (non-prelim): 891
length of query: 485
length of database: 863,360,394
effective HSP length: 132
effective length of query: 353
effective length of database: 527,999,610
effective search space: 186383862330
effective search space used: 186383862330
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 77 (34.3 bits)


Medicago: description of AC147000.15