BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146972.3 + phase: 0
(240 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 150 4e-35
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 148 1e-34
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 144 2e-33
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 139 5e-32
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] gi... 139 5e-32
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum] gi|1... 139 5e-32
emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana] ... 138 1e-31
gb|AAK29467.1| polyprotein-like [Lycopersicon chilense] 133 5e-30
ref|XP_470528.1| Putative retrovirus-related pol polyprotein [Or... 132 6e-30
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 131 1e-29
ref|NP_916849.1| retrovirus-related pol polyprotein from transpo... 130 4e-29
gb|AAP53866.1| putative polyprotein [Oryza sativa (japonica cult... 127 3e-28
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 120 2e-26
dbj|BAA97536.1| retroelement pol polyprotein-like [Arabidopsis t... 120 4e-26
ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultiv... 117 2e-25
gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis ... 115 8e-25
gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cult... 115 1e-24
ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cu... 115 1e-24
ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cu... 114 2e-24
ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sa... 114 2e-24
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25412027|pir||G84599 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 838
Score = 150 bits (378), Expect = 4e-35
Identities = 86/190 (45%), Positives = 120/190 (62%), Gaps = 13/190 (6%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KARS ++L LG+ VLR+V KE TAA M L+ L+M KSL +R +LKQ+LY ++M +S
Sbjct: 70 KARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSDSMT 129
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
I E + +F K++ DLEN++V + DED+AI+LL +LPK F+ K+T+ YGK T+ L+EI
Sbjct: 130 IEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKT-TLALDEIT 188
Query: 132 AALRT---------KELTNSKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFE--CFNC 180
A+R+ K L NS D D G S R R N+ +S +KSR + C+ C
Sbjct: 189 GAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSER-NKSQSRSKSREKKVCWVC 247
Query: 181 HKMGHFKKDC 190
K GHFKK C
Sbjct: 248 GKEGHFKKQC 257
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301696|pir||F84486 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1356
Score = 148 bits (373), Expect = 1e-34
Identities = 84/197 (42%), Positives = 125/197 (62%), Gaps = 10/197 (5%)
Query: 8 EMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMV 67
E KARSAIVL + D+VLR++ KE+TAA+M L+ LYM+K+L +R + KQ+LYSF+M
Sbjct: 69 EKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFKMS 128
Query: 68 ESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGK-EGTVT 126
E+ ++ + EF +I+ DLEN+ V + DED+AILLL ALPK+F+ K+T+ Y + +T
Sbjct: 129 ENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSILT 188
Query: 127 LEEIQAALRTKELT--NSKDLTHEHDEGLSV-------SRGNGGGRGNRRKSGNKSRFEC 177
L+E+ AA+ +KEL + K EGL V +G G+G +K +K + C
Sbjct: 189 LDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKGKGKGKKGKSKKKPGC 248
Query: 178 FNCHKMGHFKKDCPEIN 194
+ C + GHF+ CP N
Sbjct: 249 WTCGEEGHFRSSCPNQN 265
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 144 bits (364), Expect = 2e-33
Identities = 80/188 (42%), Positives = 115/188 (60%), Gaps = 10/188 (5%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KARS I+L LG+ VLR+V K+ TAA M L+ L+M KSL +R +LKQ+LY ++M E+
Sbjct: 78 KARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQRLYGYKMSENMT 137
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
+ E + +F K++ DLEN++V + DED+AI+LL +LP+ F+ K T+ Y K T+ LEEI
Sbjct: 138 MEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYCKT-TLHLEEIT 196
Query: 132 AALRT---------KELTNSKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFECFNCHK 182
+A+R+ K L N+ D D G S +RG G + R + C+ C K
Sbjct: 197 SAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKNKSRSKSKGAGKTCWICGK 256
Query: 183 MGHFKKDC 190
GHFKK C
Sbjct: 257 EGHFKKQC 264
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411934|pir||G84581 copia-like retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1137
Score = 139 bits (351), Expect = 5e-32
Identities = 73/182 (40%), Positives = 115/182 (63%), Gaps = 4/182 (2%)
Query: 11 DKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESK 70
+KA I + +GDKVLR + TAA WA L+ LY+ KSL +R +L+ ++Y++RM +SK
Sbjct: 42 EKAMDMIFINVGDKVLRNIENSKTAAEAWATLDKLYLVKSLPNRVYLQLKVYNYRMQDSK 101
Query: 71 AIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEI 130
+ E + EF K++ DL N+++Q+ DE +AIL+L ALP S++ K T+ YG+EG + L+++
Sbjct: 102 TLEENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREG-IKLDDV 160
Query: 131 QAALRTK--ELTNSKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKK 188
+A ++K EL +S + EGL V RG RG+ + + C+ C K GHFK+
Sbjct: 161 ISAAKSKELELRDSSGGSRPVGEGLYV-RGKSQARGSDGPKSTEGKKVCWICGKEGHFKR 219
Query: 189 DC 190
C
Sbjct: 220 QC 221
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
gi|11278366|pir||T47492 copia-like polyprotein -
Arabidopsis thaliana
Length = 1363
Score = 139 bits (351), Expect = 5e-32
Identities = 85/203 (41%), Positives = 124/203 (60%), Gaps = 12/203 (5%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KARS IVL + D+VLR++ KE +AA+M L+ LYM+K+L +R +LKQ+LYSF+M E+ +
Sbjct: 73 KARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKLYSFKMSENLS 132
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTV-TLEEI 130
I + EF I+ DLEN+ V + DED+AILLL +LPK F+ K+T+ Y TV +L+E+
Sbjct: 133 IEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSSGKTVLSLDEV 192
Query: 131 QAALRTKELT--NSKDLTHEHDEGLSV-------SRGNGGGRGNRRKSGNKSRFECFNCH 181
AA+ ++EL + K EGL V R +G ++S +KS+ C+ C
Sbjct: 193 AAAIYSRELEFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSKSKSKRGCWICG 252
Query: 182 KMGHFKKDCPEINGNSAQIVYEG 204
+ GH K CP N N Q +G
Sbjct: 253 EDGHLKSTCP--NKNKPQFKNQG 273
>emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
gi|130582|sp|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease]
Length = 1328
Score = 139 bits (351), Expect = 5e-32
Identities = 80/223 (35%), Positives = 124/223 (54%), Gaps = 11/223 (4%)
Query: 1 MSQAEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQ 60
M + ++ ++A SAI L L D V+ + E TA +W +LESLYM+K+L ++ +LK+Q
Sbjct: 47 MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQ 106
Query: 61 LYSFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYG 120
LY+ M E + L FN ++ L N+ V++E+EDKAILLL +LP S+++ T+L+G
Sbjct: 107 LYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHG 166
Query: 121 KEGTVTLEEIQAALRTKELTNSKD-------LTHEHDEGLSVSRGNGGGRGNRRKSGNKS 173
K T+ L+++ +AL E K +T S N G G R KS N+S
Sbjct: 167 KT-TIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRS 225
Query: 174 RF---ECFNCHKMGHFKKDCPEINGNSAQIVYEGYEDVGALMV 213
+ C+NC++ GHFK+DCP + + +D A MV
Sbjct: 226 KSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMV 268
>emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana]
gi|4539406|emb|CAB40039.1| putative retrotransposon
[Arabidopsis thaliana] gi|7444416|pir||T04181
hypothetical protein F7L13.40 - Arabidopsis thaliana
Length = 1230
Score = 138 bits (348), Expect = 1e-31
Identities = 82/201 (40%), Positives = 122/201 (59%), Gaps = 12/201 (5%)
Query: 3 QAEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLY 62
+A E KARS IVL + D+VLR+ KE TA SM L+ LYM+K+L +R +LKQ+LY
Sbjct: 62 EALMEEKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLY 121
Query: 63 SFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGK- 121
S++M E+ ++ + EF +++ DLEN V + DED+AILLL +LPK F+ K+T+ YG
Sbjct: 122 SYKMQENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSG 181
Query: 122 EGTVTLEEIQAALRTKELT--NSKDLTHEHDEGLSV-SRGNGGGRGNRRKSGNKSRFE-- 176
T++++E+ AA+ +KEL ++K EGL V + G +++ GNK R
Sbjct: 182 RTTLSVDEVVAAIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQKEKGNKGRSRSR 241
Query: 177 ------CFNCHKMGHFKKDCP 191
C+ C + GHFK CP
Sbjct: 242 SKGWKGCWICGEEGHFKTSCP 262
>gb|AAK29467.1| polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 133 bits (334), Expect = 5e-30
Identities = 79/235 (33%), Positives = 123/235 (51%), Gaps = 16/235 (6%)
Query: 8 EMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMV 67
E+ +KA SAI L L D V+ + E +A +W KLE+LYM+K+L ++ +LK+QLY+ M
Sbjct: 55 ELDEKAASAIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMD 114
Query: 68 ESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTL 127
E + L N ++ L N+ V++E+EDK I+LL +LP S+++ T+L+GK+ ++ L
Sbjct: 115 EGTNFLSHLNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKD-SIQL 173
Query: 128 EEIQAALRTKELTNSKDLTH-----EHDEGLSVSR-----GNGGGRGNRRKSGNKSRFEC 177
+++ +AL E K H G S R G G RG + C
Sbjct: 174 KDVTSALLLNEKMRKKPENHGQVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARNC 233
Query: 178 FNCHKMGHFKKDCPEINGNSAQIVYEGYEDVGALMVW-----CCLEDEEGDVSHL 227
+NC + GHFK+DCP + + +D A MV L +EE + HL
Sbjct: 234 YNCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHL 288
>ref|XP_470528.1| Putative retrovirus-related pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|27436748|gb|AAO13467.1| Putative
retrovirus-related pol polyprotein [Oryza sativa
(japonica cultivar-group)]
Length = 556
Score = 132 bits (333), Expect = 6e-30
Identities = 75/206 (36%), Positives = 113/206 (54%), Gaps = 30/206 (14%)
Query: 1 MSQAEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQ 60
M + EM +A + I L L D V+ +V E T +W KL SLYM+KSL + +LKQQ
Sbjct: 179 MDVGKWVEMKAQATAIIRLSLSDFVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQ 238
Query: 61 LYSFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYG 120
LY +M E + + + FN+++ DL ++V+L+DEDKAI+LLC+LP SFE T+ +G
Sbjct: 239 LYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSFEHVVTTLTHG 298
Query: 121 KEGTVTLEEIQAALRTKELTNSK---------------DLTHEHDEGLSVSRGNGGGRGN 165
K+ TV EEI ++L ++L SK H+H+ G+S S+ G
Sbjct: 299 KD-TVKTEEIISSLLARDLRRSKKNEAMEASQAESLLVKAKHDHEAGVSKSKEKGA---- 353
Query: 166 RRKSGNKSRFECFNCHKMGHFKKDCP 191
C+ CH+ GH +++CP
Sbjct: 354 ----------RCYKCHEFGHIRRNCP 369
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301702|pir||E84601 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 131 bits (330), Expect = 1e-29
Identities = 85/198 (42%), Positives = 127/198 (63%), Gaps = 15/198 (7%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KARSAIVL + D+VLR++ KE +AA+M L+ LYM+K+L +R + KQ+LYSF+M E+ +
Sbjct: 73 KARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFKMSENLS 132
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYG-KEGTVTLEEI 130
I + EF +I+ DLEN V + DED+AILLL +LPK F+ ++T+ YG T++L+E+
Sbjct: 133 IEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVTLSLDEV 192
Query: 131 QAALRTKEL---TNSKDLTHEHDEGLSV-----SRGNGGGRG---NRRKSGNKSRFE--C 177
AA+ +KEL +N K + + EGL V +RG RG N +KS +KSR + C
Sbjct: 193 VAAIYSKELELGSNKKSIKGQ-AEGLFVKEKTETRGRTEQRGNNNNNKKSRSKSRSKKGC 251
Query: 178 FNCHKMGHFKKDCPEING 195
+ C + + + E NG
Sbjct: 252 WICGESSNGSSNYSEANG 269
>ref|NP_916849.1| retrovirus-related pol polyprotein from transposon TNT 1-94-like
[Oryza sativa (japonica cultivar-group)]
Length = 425
Score = 130 bits (326), Expect = 4e-29
Identities = 73/206 (35%), Positives = 110/206 (52%), Gaps = 30/206 (14%)
Query: 1 MSQAEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQ 60
M + EM +A + I L L D V+ +V E T +W KL SLYM+KSL + +LKQQ
Sbjct: 48 MDAGKWEEMKAQAAATIRLSLSDSVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQ 107
Query: 61 LYSFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYG 120
LY +M E + + + FN+++ DL ++V L DEDKAI+LLC+LP S+E T+ +G
Sbjct: 108 LYGLQMQEESDLRKHVDVFNQLVVDLSKLDVNLYDEDKAIILLCSLPPSYEHVVTTLTHG 167
Query: 121 KEGTVTLEEIQAALRTKELTNSK---------------DLTHEHDEGLSVSRGNGGGRGN 165
K+ T+ EEI ++L ++L SK H+H+ G+S S G
Sbjct: 168 KD-TIKTEEIISSLLARDLRRSKKNEAMEASQAESLLVKAKHDHEAGVSKSNEKGA---- 222
Query: 166 RRKSGNKSRFECFNCHKMGHFKKDCP 191
C+ CH+ GH +++CP
Sbjct: 223 ----------RCYKCHEFGHIRRNCP 238
>gb|AAP53866.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534554|ref|NP_921579.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 382
Score = 127 bits (318), Expect = 3e-28
Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 34/241 (14%)
Query: 8 EMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMV 67
EM +A + I L L D V+ +V E + +W KL SL+M+KSL + +LKQQLY ++
Sbjct: 55 EMKAQAAATIRLSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQ 114
Query: 68 ESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTL 127
E + + + FN+++ DL ++V+L+DEDKAI+LLC+LP S+E T+ +GK+ TV
Sbjct: 115 EESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKD-TVKT 173
Query: 128 EEIQAALRTKELTNSKDL---------------THEHDEGLSVSRGNGGGRGNRRKSGNK 172
EEI ++L ++L SK H+H+ G+S S+ G
Sbjct: 174 EEIISSLLARDLRRSKKNEATKASQGKSLLVKDKHDHEAGVSKSKEKGA----------- 222
Query: 173 SRFECFNCHKMGHFKKDCPEI---NGNSAQIVYEGYE-DVGALMVWCCLEDEEGDVSHLG 228
C+ CH+ GH +++CP + G A + G + D G+ + ++ G+ L
Sbjct: 223 ---RCYKCHEFGHIRRNCPLLKKRKGGIASLAARGDDSDSGSHEILTVSDEMSGEAWMLD 279
Query: 229 S 229
S
Sbjct: 280 S 280
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301697|pir||B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1335
Score = 120 bits (302), Expect = 2e-26
Identities = 70/197 (35%), Positives = 111/197 (55%), Gaps = 10/197 (5%)
Query: 3 QAEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLY 62
+ + E DKA++ I L + DKVLR++ TAA W L+ L+M +SL HR + + Y
Sbjct: 39 EVARLERCDKAKNVIFLNVADKVLRKIELCKTAAEAWETLDRLFMIRSLPHRVYTQLSFY 98
Query: 63 SFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLY-GK 121
+F+M E+K I E + +F KI+ DL ++++ + DE +AILLL +LP ++ TM Y
Sbjct: 99 TFKMQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNS 158
Query: 122 EGTVTLEEIQAALRTKE---LTNSKDLTHEH-----DEGLSVSRGNGGGRGNRRKSGNKS 173
+ L+++ A R KE N++ + H +G + ++GN G +R KS +
Sbjct: 159 REKLRLDDVMVAARDKERELSQNNRPVVEGHFARGRPDGKNNNQGNKGKNRSRSKSADGK 218
Query: 174 RFECFNCHKMGHFKKDC 190
R C+ C K GHFKK C
Sbjct: 219 RV-CWICGKEGHFKKQC 234
>dbj|BAA97536.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1338
Score = 120 bits (300), Expect = 4e-26
Identities = 74/215 (34%), Positives = 120/215 (55%), Gaps = 11/215 (5%)
Query: 6 KTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFR 65
+ E +KARS I+L + D +LR + E TAA M + L+ LY++ L+ R LK++L+ F+
Sbjct: 81 REEKENKARSVIILSVADNILRRIRTEETAAGMISVLDKLYLSDPLSSRISLKRKLFEFK 140
Query: 66 MVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTV 125
M E+KA+ E + +F +I++DLE ++V + DEDKA +LL +LP+ E K ++ Y +E +
Sbjct: 141 MSENKAVEENIEDFFRIVEDLEKLDVYVSDEDKAFMLLLSLPRKLEQLKYSLDYCEE-PL 199
Query: 126 TLEEIQAALRTKEL--TNSKDLTHEHDEGLSV-SRGNGGGRGNRRKSGNKSRFE------ 176
TL + A+ KEL + T E ++ LS+ R R + K K R E
Sbjct: 200 TLGRVMTAIYKKELEVAQIERQTEEEEKRLSLRERERSDYREEQAKGKEKVRSEAREKKG 259
Query: 177 -CFNCHKMGHFKKDCPEINGNSAQIVYEGYEDVGA 210
C+ C + GH K +C + N ++ YE+ A
Sbjct: 260 PCWRCGQKGHVKTECFQEKKNKSRKKSVRYEESSA 294
>ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultivar-group)]
gi|38344889|emb|CAD41912.2| OSJNBa0033G05.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1181
Score = 117 bits (294), Expect = 2e-25
Identities = 71/195 (36%), Positives = 116/195 (59%), Gaps = 18/195 (9%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KA S I L L + +L+EV KE TAA +W KLE + MTK L + LKQ+L+ ++ + +
Sbjct: 57 KAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGS 116
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
+M+ L+ F +I+ DLE++EV+ +++D A++LLC+LP S+ +F++T+LY ++ T+TL+E+
Sbjct: 117 VMDHLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRD-TLTLKEVY 175
Query: 132 AALRTKELTNS---KDLTHEHDEGLSVSRGNGGGRGNRRKSGNKS------------RFE 176
AL KE + ++ EGL V RG+ + KS +KS R++
Sbjct: 176 DALHAKEKMKKMVPSEGSNSQAEGL-VVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYK 234
Query: 177 -CFNCHKMGHFKKDC 190
C C + GH C
Sbjct: 235 SCKYCKRDGHDISKC 249
>gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
gi|25301707|pir||E86490 hypothetical protein F28L22.3 -
Arabidopsis thaliana
Length = 1356
Score = 115 bits (289), Expect = 8e-25
Identities = 67/196 (34%), Positives = 115/196 (58%), Gaps = 12/196 (6%)
Query: 6 KTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFR 65
K E ++A++ I+ + D VL +V AT A +WA L YM SL +R + + +LYSF+
Sbjct: 75 KIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSLPNRIYTQLKLYSFK 134
Query: 66 MVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTV 125
MV + I + + EF +I+ +L ++E+Q+++E +AIL+L +LP S K+T+ YG + T+
Sbjct: 135 MVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKYGNK-TL 193
Query: 126 TLEEIQAALRT--KELTNSKDL---------THEHDEGLSVSRGNGGGRGNRRKSGNKSR 174
T++++ ++ ++ +EL + DL T E L + GG R +S +K++
Sbjct: 194 TVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSRSNSKTK 253
Query: 175 FECFNCHKMGHFKKDC 190
C+ C K GH KKDC
Sbjct: 254 VPCWYCKKEGHVKKDC 269
>gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37535452|ref|NP_922028.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22094359|gb|AAM91886.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1280
Score = 115 bits (288), Expect = 1e-24
Identities = 70/195 (35%), Positives = 114/195 (57%), Gaps = 18/195 (9%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KA S I L L + +L+EV KE TAA +W KLE + MTK L + LKQ+L+ ++ + +
Sbjct: 92 KAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGS 151
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
+M+ L+ F +I+ DLE+IEV+ ++ED ++LLC+LP S+ +F++T+LY + T+ L+E+
Sbjct: 152 VMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHD-TLILKEVY 210
Query: 132 AALRTKELTNS---KDLTHEHDEGLSVSRGNGGGRGNRRKSGNKS------------RFE 176
AL KE + ++ EGL V RG + + +S +KS R++
Sbjct: 211 DALHAKEKMKKMVPSEGSNSQAEGL-VVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYK 269
Query: 177 -CFNCHKMGHFKKDC 190
C C + GH +C
Sbjct: 270 SCKYCKRDGHDISEC 284
>ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475213|gb|AAT44282.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1243
Score = 115 bits (288), Expect = 1e-24
Identities = 68/195 (34%), Positives = 116/195 (58%), Gaps = 18/195 (9%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KA S I L L + +L+EV KE TAA +W KLE + MTK L + LKQ+L+ ++ + ++
Sbjct: 57 KAISYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDES 116
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
+M+ L+ F +I+ DLE++EV+ +++D ++LLC+LP S+ +F+ T+LY ++ T+TL+E+
Sbjct: 117 VMDHLSAFKEIVADLESMEVKYDEDDLGLILLCSLPSSYANFRGTILYSRD-TLTLKEVY 175
Query: 132 AALRTKELTN---SKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKS------------RFE 176
A KE + + ++ EGL V RG + + +S +KS R++
Sbjct: 176 DAFHAKEKMKKMVTSEGSNSQAEGL-VVRGRQQKKNTKNQSRDKSSSSYRGRTKSRGRYK 234
Query: 177 -CFNCHKMGHFKKDC 190
C C + GH +C
Sbjct: 235 SCKYCKRDGHDISEC 249
>ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475188|gb|AAT44257.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1211
Score = 114 bits (286), Expect = 2e-24
Identities = 65/165 (39%), Positives = 103/165 (62%), Gaps = 5/165 (3%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
K S I L L + +L+EV KE TAA +W KLE + MTK L + LKQ+L+ ++ + +
Sbjct: 57 KTMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGS 116
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
+M+ L+ F KI+ DLE++EV+ ++ED ++LLC+LP S+ +F++T+LY + T+TL+E+
Sbjct: 117 VMDHLSAFKKIVADLESMEVKYDEEDLCLILLCSLPSSYANFRDTILYSCD-TLTLKEVY 175
Query: 132 AALRTKELTNS---KDLTHEHDEGLSVSRGNGGGRGNRRKSGNKS 173
AL KE + ++ EGL V RG + KS +KS
Sbjct: 176 DALHAKEKIKKMVPSEGSNSQAEGL-VVRGRQQEKNTNSKSRDKS 219
>ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sativa]
gi|14029020|gb|AAK52561.1| Putative retroelement pol
polyprotein [Oryza sativa]
Length = 1326
Score = 114 bits (285), Expect = 2e-24
Identities = 71/201 (35%), Positives = 114/201 (56%), Gaps = 16/201 (7%)
Query: 4 AEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYS 63
AE+ KA I L L + +L+EV +E TAA +W KLES+ M+K L + +K +L+S
Sbjct: 51 AEEKRKDRKALLLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFS 110
Query: 64 FRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEG 123
++ ES +++ ++ F +I+ DL +IEVQ +DED +LLLC+LP S+ +F++T+L ++
Sbjct: 111 HKLQESGSVLNHISVFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRDTILLSRD- 169
Query: 124 TVTLEEIQAALRTKELTN---SKDLTHEHDEGLSVSRGNGGGR-----GNRRKSGNKSRF 175
+TL E+ AL+ +E D + E L V RG R +R KS ++ R
Sbjct: 170 ELTLAEVYEALQNREKMKGMVQSDASSSKGEALQV-RGRSEQRTYNDSSDRDKSQSRGRS 228
Query: 176 E------CFNCHKMGHFKKDC 190
+ C C K HF ++C
Sbjct: 229 KSRGKKFCKYCKKKNHFIEEC 249
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,753,372
Number of Sequences: 2540612
Number of extensions: 15486172
Number of successful extensions: 67058
Number of sequences better than 10.0: 976
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 445
Number of HSP's that attempted gapping in prelim test: 65603
Number of HSP's gapped (non-prelim): 1617
length of query: 240
length of database: 863,360,394
effective HSP length: 124
effective length of query: 116
effective length of database: 548,324,506
effective search space: 63605642696
effective search space used: 63605642696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 73 (32.7 bits)
Medicago: description of AC146972.3