BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146972.10 - phase: 0
(106 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR28001.1| TFIIA-S [Arabidopsis thaliana] gi|7269294|emb|CAB... 198 3e-50
gb|AAO33769.1| transcription factor IIA small subunit [Oryza sat... 191 5e-48
gb|AAV53715.1| transcription factor IIA gamma subunit [Oryza sat... 188 2e-47
dbj|BAD87713.1| putative transcription factor IIA small subunit ... 178 3e-44
emb|CAA67369.1| TFIIA [Arabidopsis thaliana] 174 5e-43
ref|XP_623063.1| PREDICTED: similar to Transcription initiation ... 115 3e-25
ref|XP_638249.1| transcription factor IIA, small chain [Dictyost... 115 3e-25
emb|CAC44187.1| putative TFIIA gamma chain [Oncorhynchus mykiss]... 114 6e-25
gb|AAP44970.1| transcription factor IIA small subunit [Xenopus l... 113 1e-24
gb|AAF61068.1| TFIIA P12 subunit [Paralichthys olivaceus] gi|201... 113 1e-24
ref|NP_001018441.1| hypothetical protein LOC553632 [Danio rerio]... 113 1e-24
ref|NP_445797.1| general transcription factor Iia 2 [Rattus norv... 112 2e-24
gb|AAP36026.1| general transcription factor IIA, 2, 12kDa [Homo ... 112 2e-24
pdb|1NVP|D Chain D, Human TfiiaTBPDNA COMPLEX 112 2e-24
ref|XP_313653.2| ENSANGP00000013128 [Anopheles gambiae str. PEST... 110 1e-23
gb|EAA64225.1| hypothetical protein AN2181.2 [Aspergillus nidula... 110 1e-23
gb|EAL93865.1| transcription initiation factor iia small chain [... 109 1e-23
emb|CAA58244.1| dTFIIA-S [Drosophila melanogaster] gi|7301064|gb... 107 7e-23
gb|EAL27787.1| GA18701-PA [Drosophila pseudoobscura] 107 7e-23
emb|CAA19263.1| SPCC553.11c [Schizosaccharomyces pombe] gi|19075... 107 9e-23
>gb|AAR28001.1| TFIIA-S [Arabidopsis thaliana] gi|7269294|emb|CAB79354.1|
transcription factor IIA small subunit [Arabidopsis
thaliana] gi|5051786|emb|CAB45079.1| transcription
factor IIA small subunit [Arabidopsis thaliana]
gi|2826882|emb|CAA11524.1| transcription factor IIA
small subunit [Arabidopsis thaliana]
gi|21553865|gb|AAM62958.1| transcription factor IIA
small subunit [Arabidopsis thaliana]
gi|20465319|gb|AAM20063.1| putative transcription factor
IIA small subunit [Arabidopsis thaliana]
gi|18176271|gb|AAL60014.1| putative transcription factor
IIA small subunit [Arabidopsis thaliana]
gi|15233829|ref|NP_194175.1| transcription initiation
factor IIA gamma chain / TFIIA-gamma (TFIIA-S)
[Arabidopsis thaliana] gi|30686529|ref|NP_849434.1|
transcription initiation factor IIA gamma chain /
TFIIA-gamma (TFIIA-S) [Arabidopsis thaliana]
gi|7459661|pir||T09907 transcription factor IIA small
chain T22A6.270 [validated] - Arabidopsis thaliana
gi|20141796|sp|Q39236|T2AG_ARATH Transcription
initiation factor IIA gamma chain (TFIIA-gamma)
Length = 106
Score = 198 bits (503), Expect = 3e-50
Identities = 96/106 (90%), Positives = 104/106 (97%)
Query: 1 MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK 60
MATFELYRRSTIGMCLTETLDEMVQ+GTLSPE+AIQVLVQFDKSMTEALE+QVK+KVSIK
Sbjct: 1 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60
Query: 61 GHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLSQ 106
GHLHTYRFCDNVWTFILQDA+FK++D QENV RVKIVACDSKLL+Q
Sbjct: 61 GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106
>gb|AAO33769.1| transcription factor IIA small subunit [Oryza sativa (indica
cultivar-group)] gi|52353565|gb|AAU44131.1| putative
transcription initiation factor IIA gamma chain [Oryza
sativa (japonica cultivar-group)]
gi|55585041|gb|AAV53716.1| transcription factor IIA
gamma subunit [Oryza sativa (indica cultivar-group)]
gi|14719311|gb|AAK73129.1| putative transcription factor
IIA small subunit [Oryza sativa]
gi|20140687|sp|Q94HL5|T2AG_ORYSA Transcription
initiation factor IIA gamma chain (TFIIA-gamma)
Length = 106
Score = 191 bits (484), Expect = 5e-48
Identities = 94/106 (88%), Positives = 99/106 (92%)
Query: 1 MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK 60
MATFELYRRSTIGMCLTETLDEMV +GTLSPE+AIQVLVQFDKSMTEALE QVKSKVSIK
Sbjct: 1 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60
Query: 61 GHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLSQ 106
GHLHTYRFCDNVWTFIL +A FKNE+ E VG+VKIVACDSKLLSQ
Sbjct: 61 GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106
>gb|AAV53715.1| transcription factor IIA gamma subunit [Oryza sativa (indica
cultivar-group)]
Length = 106
Score = 188 bits (478), Expect = 2e-47
Identities = 93/106 (87%), Positives = 98/106 (91%)
Query: 1 MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK 60
MATFELYRRSTIGMCLTETLDEMV +GTLSPE+AIQVL QFDKSMTEALE QVKSKVSIK
Sbjct: 1 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVKSKVSIK 60
Query: 61 GHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLSQ 106
GHLHTYRFCDNVWTFIL +A FKNE+ E VG+VKIVACDSKLLSQ
Sbjct: 61 GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106
>dbj|BAD87713.1| putative transcription factor IIA small subunit [Oryza sativa
(japonica cultivar-group)] gi|57899208|dbj|BAD87357.1|
putative transcription factor IIA small subunit [Oryza
sativa (japonica cultivar-group)]
Length = 109
Score = 178 bits (451), Expect = 3e-44
Identities = 85/104 (81%), Positives = 95/104 (90%)
Query: 1 MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK 60
MATFELYRRSTIGMCLT+TLD+MV +G LSPE+AIQVLVQFDKSMT ALE QVKSKV++K
Sbjct: 1 MATFELYRRSTIGMCLTDTLDDMVSSGALSPELAIQVLVQFDKSMTSALEHQVKSKVTVK 60
Query: 61 GHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLL 104
GHLHTYRFCDNVWTFIL DA+FKNE+ E + +VKIVACDSKLL
Sbjct: 61 GHLHTYRFCDNVWTFILTDAIFKNEEITETINKVKIVACDSKLL 104
>emb|CAA67369.1| TFIIA [Arabidopsis thaliana]
Length = 106
Score = 174 bits (441), Expect = 5e-43
Identities = 88/106 (83%), Positives = 97/106 (91%)
Query: 1 MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK 60
MATFELYRRSTIGMCLTETLDEMVQ+GT+SPE+AIQVLVQFDKSMTEALE+QVK+KVSIK
Sbjct: 1 MATFELYRRSTIGMCLTETLDEMVQSGTVSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60
Query: 61 GHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLSQ 106
GHLH + DNVWTFILQDA+FK+ D QENV VKIVA DSKLL+Q
Sbjct: 61 GHLHHLQVRDNVWTFILQDAMFKSYDRQENVSPVKIVASDSKLLTQ 106
>ref|XP_623063.1| PREDICTED: similar to Transcription initiation factor IIA gamma
chain (TFIIA P14 subunit) (TFIIA-14) (dTFIIA-S)
(TFIIA-gamma) [Apis mellifera]
Length = 112
Score = 115 bits (288), Expect = 3e-25
Identities = 54/103 (52%), Positives = 79/103 (76%), Gaps = 1/103 (0%)
Query: 3 TFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK-G 61
+++LYR +T+G L E+LDE++Q G ++P++AI+VL+QFDK++ +AL T+VKS+++ K G
Sbjct: 2 SYQLYRNTTLGNTLQESLDELIQYGQITPQLAIKVLLQFDKAINQALATRVKSRLTFKAG 61
Query: 62 HLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLL 104
L+TYRFCDNVWTF+L D F+ V +VKIVACD K L
Sbjct: 62 KLNTYRFCDNVWTFMLNDVEFREVQEVAIVDKVKIVACDGKTL 104
>ref|XP_638249.1| transcription factor IIA, small chain [Dictyostelium discoideum]
gi|60466695|gb|EAL64746.1| transcription initiation
factor IIA gamma chain [Dictyostelium discoideum]
Length = 115
Score = 115 bits (287), Expect = 3e-25
Identities = 56/101 (55%), Positives = 76/101 (74%), Gaps = 1/101 (0%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
+ELYR+STIG LT+TL+E++ N +S + ++L QFDK++ EAL VK+K + KG L
Sbjct: 8 YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSL 67
Query: 64 HTYRFCDNVWTFILQDALFKNEDNQ-ENVGRVKIVACDSKL 103
HTYRFCD+VWTFIL++A FK E N+ V RVKIVACD+ +
Sbjct: 68 HTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANV 108
>emb|CAC44187.1| putative TFIIA gamma chain [Oncorhynchus mykiss]
gi|20140636|sp|Q90YG6|T2AG_ONCMY Transcription
initiation factor IIA gamma chain (TFIIA P12 subunit)
(TFIIA-12) (TFIIAS) (TFIIA-gamma)
Length = 108
Score = 114 bits (285), Expect = 6e-25
Identities = 50/99 (50%), Positives = 75/99 (75%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
++LYR +T+G L E+LDE++Q ++P++A+QVL+QFDK++ AL +V+++V+ KG L
Sbjct: 3 YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALANRVRNRVNFKGSL 62
Query: 64 HTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSK 102
+TYRFCDNVWTF+L D F+ + V +VKIVACD K
Sbjct: 63 NTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101
>gb|AAP44970.1| transcription factor IIA small subunit [Xenopus laevis]
gi|49900038|gb|AAH77041.1| MGC89923 protein [Xenopus
tropicalis] gi|57033116|gb|AAH88977.1| TFIIAg protein
[Xenopus laevis] gi|33312520|gb|AAQ04073.1|
transcription factor IIA small subunit [Xenopus laevis]
gi|49118757|gb|AAH72888.1| TFIIAg protein [Xenopus
laevis] gi|52346124|ref|NP_001005107.1| MGC89923 protein
[Xenopus tropicalis]
Length = 109
Score = 113 bits (283), Expect = 1e-24
Identities = 49/99 (49%), Positives = 76/99 (76%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
++LYR +T+G L E+LDE++Q+ ++P++A+QVL+QFDK++ AL +V+++V+ +G L
Sbjct: 3 YQLYRNTTLGNSLQESLDELIQSQQINPQLALQVLLQFDKAINSALAQRVRNRVNFRGSL 62
Query: 64 HTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSK 102
+TYRFCDNVWTF+L D F+ + V +VKIVACD K
Sbjct: 63 NTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101
>gb|AAF61068.1| TFIIA P12 subunit [Paralichthys olivaceus]
gi|20140818|sp|Q9IA78|T2AG_PAROL Transcription
initiation factor IIA gamma chain (TFIIA P12 subunit)
(TFIIA-12) (TFIIAS) (TFIIA-gamma)
Length = 111
Score = 113 bits (283), Expect = 1e-24
Identities = 49/99 (49%), Positives = 76/99 (76%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
++LYR +T+G L E+LDE++Q ++P++A+QVL+QFDK++ AL ++V+++V+ +G L
Sbjct: 3 YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALASRVRNRVNFRGSL 62
Query: 64 HTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSK 102
+TYRFCDNVWTF+L D F+ + V +VKIVACD K
Sbjct: 63 NTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101
>ref|NP_001018441.1| hypothetical protein LOC553632 [Danio rerio]
gi|63101237|gb|AAH95322.1| Hypothetical protein
LOC553632 [Danio rerio]
Length = 109
Score = 113 bits (282), Expect = 1e-24
Identities = 49/99 (49%), Positives = 75/99 (75%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
++LYR +T+G L E+LDE++Q ++P++A+QVL+QFDK++ AL +V+++V+ +G L
Sbjct: 3 YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALANRVRNRVNFRGSL 62
Query: 64 HTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSK 102
+TYRFCDNVWTF+L D F+ + V +VKIVACD K
Sbjct: 63 NTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101
>ref|NP_445797.1| general transcription factor Iia 2 [Rattus norvegicus]
gi|57108247|ref|XP_535502.1| PREDICTED: similar to
general transcription factor IIa, 2 (12kD subunit)
[Canis familiaris] gi|47117190|sp|Q80ZM7|T2AG_MOUSE
Putative transcription initiation factor IIA gamma chain
(TFIIA P12 subunit) (TFIIA-12) (TFIIAS) (TFIIA-gamma)
gi|2811071|sp|O08950|T2AG_RAT Transcription initiation
factor IIA gamma chain (TFIIA P12 subunit) (TFIIA-12)
(TFIIAS) (TFIIA-gamma) gi|2149998|gb|AAB58717.1| TFIIA
small subunit [Rattus norvegicus]
Length = 109
Score = 112 bits (281), Expect = 2e-24
Identities = 49/99 (49%), Positives = 75/99 (75%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
++LYR +T+G L E+LDE++Q+ ++P++A+QVL+QFDK++ AL +V+++V+ +G L
Sbjct: 3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSL 62
Query: 64 HTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSK 102
+TYRFCDNVWTF+L D F+ V +VKIVACD K
Sbjct: 63 NTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101
>gb|AAP36026.1| general transcription factor IIA, 2, 12kDa [Homo sapiens]
gi|55642219|ref|XP_510452.1| PREDICTED: similar to
Transcription initiation factor IIA gamma chain (TFIIA
P12 subunit) (TFIIA-12) (TFIIAS) (TFIIA-gamma) [Pan
troglodytes] gi|60656075|gb|AAX32601.1| general
transcription factor IIA 2 [synthetic construct]
gi|4758486|ref|NP_004483.1| general transcription factor
IIA, 2 (12kD subunit) [Homo sapiens]
gi|12804933|gb|AAH01919.1| General transcription factor
IIA, 2, 12kDa [Homo sapiens] gi|12653047|gb|AAH00287.1|
General transcription factor IIA, 2, 12kDa [Homo
sapiens] gi|1729806|sp|P52657|T2AG_HUMAN Transcription
initiation factor IIA gamma chain (TFIIA P12 subunit)
(TFIIA-12) (TFIIAS) (TFIIA-gamma)
gi|710403|gb|AAB58247.1| transcription factor TFIIA
small subunit p12 gi|558214|emb|CAA57357.1| smallest
subunit of TFIIA [Homo sapiens]
gi|49457380|emb|CAG46989.1| GTF2A2 [Homo sapiens]
gi|555900|gb|AAA64951.1| transcription factor IIA small
12 kDa subunit [Homo sapiens]
Length = 109
Score = 112 bits (280), Expect = 2e-24
Identities = 49/99 (49%), Positives = 75/99 (75%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
++LYR +T+G L E+LDE++Q+ ++P++A+QVL+QFDK++ AL +V+++V+ +G L
Sbjct: 3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSL 62
Query: 64 HTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSK 102
+TYRFCDNVWTF+L D F+ V +VKIVACD K
Sbjct: 63 NTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101
>pdb|1NVP|D Chain D, Human TfiiaTBPDNA COMPLEX
Length = 108
Score = 112 bits (280), Expect = 2e-24
Identities = 49/99 (49%), Positives = 75/99 (75%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
++LYR +T+G L E+LDE++Q+ ++P++A+QVL+QFDK++ AL +V+++V+ +G L
Sbjct: 2 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSL 61
Query: 64 HTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSK 102
+TYRFCDNVWTF+L D F+ V +VKIVACD K
Sbjct: 62 NTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 100
>ref|XP_313653.2| ENSANGP00000013128 [Anopheles gambiae str. PEST]
gi|55240747|gb|EAA09250.2| ENSANGP00000013128 [Anopheles
gambiae str. PEST]
Length = 112
Score = 110 bits (274), Expect = 1e-23
Identities = 52/99 (52%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 3 TFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK-G 61
T++LYR +T+G L E+LDE++Q G ++P++A++VLVQFDKS+ AL +VKS+V+ K
Sbjct: 2 TYQLYRNTTLGNTLQESLDELIQYGQITPQLAVRVLVQFDKSINAALSNRVKSRVTFKAA 61
Query: 62 HLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACD 100
L+TYRFCDNVWT +L D F+ V +VKIVACD
Sbjct: 62 KLNTYRFCDNVWTLMLNDVEFREVHEFARVDKVKIVACD 100
>gb|EAA64225.1| hypothetical protein AN2181.2 [Aspergillus nidulans FGSC A4]
gi|67523451|ref|XP_659785.1| hypothetical protein
AN2181_2 [Aspergillus nidulans FGSC A4]
gi|49089144|ref|XP_406318.1| hypothetical protein
AN2181.2 [Aspergillus nidulans FGSC A4]
Length = 111
Score = 110 bits (274), Expect = 1e-23
Identities = 49/103 (47%), Positives = 79/103 (76%), Gaps = 3/103 (2%)
Query: 2 ATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKG 61
A +ELYR S++G+ LT+TLD+++ G + P++A+++L FD+ +TE L +V+++++ KG
Sbjct: 5 AYYELYRGSSLGLSLTDTLDDLINEGRIEPQLAMKILSTFDRVITEVLADKVRTRLTFKG 64
Query: 62 HLHTYRFCDNVWTFILQDALFKNEDNQENVG--RVKIVACDSK 102
HL TYRFCD VWTF+++D FK DNQ+ + +VKIV+C+SK
Sbjct: 65 HLDTYRFCDEVWTFLIKDVNFK-LDNQQTISADKVKIVSCNSK 106
>gb|EAL93865.1| transcription initiation factor iia small chain [Aspergillus
fumigatus Af293]
Length = 111
Score = 109 bits (273), Expect = 1e-23
Identities = 50/103 (48%), Positives = 78/103 (75%), Gaps = 3/103 (2%)
Query: 2 ATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKG 61
A +ELYR S++G+ LT+TLD+++ G + P++A+++L FD+ +TE L +V+++++ KG
Sbjct: 5 AYYELYRGSSLGLSLTDTLDDLINEGRIEPQLAMKILSTFDRVITEVLADKVRARLTFKG 64
Query: 62 HLHTYRFCDNVWTFILQDALFKNEDNQENV--GRVKIVACDSK 102
HL TYRFCD VWTF+++D FK DNQ V +VKIV+C+SK
Sbjct: 65 HLDTYRFCDEVWTFLIKDVTFK-LDNQATVTADKVKIVSCNSK 106
>emb|CAA58244.1| dTFIIA-S [Drosophila melanogaster] gi|7301064|gb|AAF56199.1|
CG5163-PA [Drosophila melanogaster]
gi|17738155|ref|NP_524467.1| CG5163-PA [Drosophila
melanogaster] gi|1711664|sp|P52656|T2AG_DROME
Transcription initiation factor IIA gamma chain (TFIIA
P14 subunit) (TFIIA-14) (dTFIIA-S) (TFIIA-gamma)
Length = 106
Score = 107 bits (267), Expect = 7e-23
Identities = 51/101 (50%), Positives = 73/101 (71%), Gaps = 1/101 (0%)
Query: 3 TFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK-G 61
+++LYR +T+G L E+LDE++Q G ++P +A +VL+QFDKS+ AL +VK++V+ K G
Sbjct: 2 SYQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQRVKARVTFKAG 61
Query: 62 HLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSK 102
L+TYRFCDNVWT +L D F+ V +VKIVACD K
Sbjct: 62 KLNTYRFCDNVWTLMLNDVEFREVHEIVKVDKVKIVACDGK 102
>gb|EAL27787.1| GA18701-PA [Drosophila pseudoobscura]
Length = 103
Score = 107 bits (267), Expect = 7e-23
Identities = 51/101 (50%), Positives = 73/101 (71%), Gaps = 1/101 (0%)
Query: 3 TFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIK-G 61
+++LYR +T+G L E+LDE++Q G ++P +A +VL+QFDKS+ AL +VK++V+ K G
Sbjct: 2 SYQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQRVKARVTFKAG 61
Query: 62 HLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSK 102
L+TYRFCDNVWT +L D F+ V +VKIVACD K
Sbjct: 62 KLNTYRFCDNVWTLMLNDVEFREVHEFVKVDKVKIVACDGK 102
>emb|CAA19263.1| SPCC553.11c [Schizosaccharomyces pombe]
gi|19075263|ref|NP_587763.1| hypothetical protein
SPCC553.11c [Schizosaccharomyces pombe 972h-]
gi|7493052|pir||T41393 probable transcription factor iia
small subunit - fission yeast (Schizosaccharomyces
pombe) gi|20140439|sp|O74948|T2AG_SCHPO Probable
transcription initiation factor IIA small chain
Length = 107
Score = 107 bits (266), Expect = 9e-23
Identities = 48/99 (48%), Positives = 74/99 (74%), Gaps = 2/99 (2%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
+ELYRRS I LT+ LD+++ G +SP++A++VL FDKSMTEAL +V+S+++ KGHL
Sbjct: 5 YELYRRSRIS--LTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 62
Query: 64 HTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSK 102
TYRFCD VWTFI+++ F+ ++ +++IVAC ++
Sbjct: 63 DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 101
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,051,761
Number of Sequences: 2540612
Number of extensions: 4667405
Number of successful extensions: 11319
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11253
Number of HSP's gapped (non-prelim): 51
length of query: 106
length of database: 863,360,394
effective HSP length: 82
effective length of query: 24
effective length of database: 655,030,210
effective search space: 15720725040
effective search space used: 15720725040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146972.10