BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146940.4 + phase: 1 /pseudo
(674 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC25101.1| putative transposase [Arabidopsis thaliana] gi|25... 67 1e-09
gb|AAP54921.1| hypothetical protein [Oryza sativa (japonica cult... 44 0.017
ref|XP_476234.1| unknown protein [Oryza sativa (japonica cultiva... 44 0.017
ref|NP_918787.1| B1096D03.1 [Oryza sativa (japonica cultivar-gro... 44 0.017
ref|NP_680299.1| hAT dimerisation domain-containing protein [Ara... 42 0.065
ref|NP_910050.1| hypothetical protein [Oryza sativa (japonica cu... 40 0.25
dbj|BAB03069.1| transposase-like protein [Arabidopsis thaliana] ... 37 1.6
gb|AAV31197.1| putative polyprotein [Oryza sativa (japonica cult... 37 2.7
gb|AAK98693.1| Putative transposable element [Oryza sativa] 36 3.6
emb|CAA83589.1| MLG72 [Streptococcus sp. 'group G'] gi|632187|pi... 36 4.7
emb|CAA42694.1| M protein [Streptococcus sp.] 36 4.7
gb|AAC97809.1| ORF MSV089 Putative NTPase, Rabbit fibroma virus ... 36 4.7
>gb|AAC25101.1| putative transposase [Arabidopsis thaliana] gi|25456264|pir||T52187
probable transposase [imported] - Arabidopsis thaliana
Length = 729
Score = 67.4 bits (163), Expect = 1e-09
Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 557 EKLECV*AYSLKKKRNRLEHQRLNDLVFVRYNLMLENRNNKIRNYDPINDELLDDHHDNW 616
E+ CV KKRNRLEHQRLNDLVFV YNL L++R+ + R+YDP++ E + D + W
Sbjct: 612 ERNWCVFERIHTKKRNRLEHQRLNDLVFVHYNLRLQHRSKRKRSYDPVDYESI-DKTEFW 670
Query: 617 VLEDSPP-FLTVEELES 632
V+E+ L +ELE+
Sbjct: 671 VVEEEEAGELEYDELEN 687
>gb|AAP54921.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37536664|ref|NP_922634.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|13876519|gb|AAK43495.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 645
Score = 43.9 bits (102), Expect = 0.017
Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 569 KKRNRLEHQRLNDLVFVRYNLMLEN-RNNKIRNYDPINDELLD 610
KKRNRL H+R+ DLVFV++N L N R NK R DPI E+ D
Sbjct: 511 KKRNRLLHERMRDLVFVKFNSKLRNKRENKGR--DPIEKEVDD 551
>ref|XP_476234.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|46485870|gb|AAS98495.1| unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 1005
Score = 43.9 bits (102), Expect = 0.017
Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 569 KKRNRLEHQRLNDLVFVRYNLMLEN-RNNKIRNYDPINDELLD 610
KKRNRL H+R+ DLVFV++N L N R NK R DPI E+ D
Sbjct: 866 KKRNRLLHERMRDLVFVKFNSKLRNKRENKGR--DPIEKEVDD 906
>ref|NP_918787.1| B1096D03.1 [Oryza sativa (japonica cultivar-group)]
Length = 919
Score = 43.9 bits (102), Expect = 0.017
Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 569 KKRNRLEHQRLNDLVFVRYNLMLEN-RNNKIRNYDPINDELLD 610
KKRNRL H+R+ DLVFV++N L N R NK R DPI E+ D
Sbjct: 823 KKRNRLLHERMRDLVFVKFNSKLRNKRENKGR--DPIEKEVDD 863
>ref|NP_680299.1| hAT dimerisation domain-containing protein [Arabidopsis thaliana]
Length = 485
Score = 42.0 bits (97), Expect = 0.065
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 569 KKRNRLEHQRLNDLVFVRYNLMLENRNNKIRNYDPI 604
K+RNRL RLND++FV+YN L+ R + +DPI
Sbjct: 258 KRRNRLTQCRLNDMIFVKYNRALQRRYKRNDTFDPI 293
>ref|NP_910050.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|27545045|gb|AAO18451.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 779
Score = 40.0 bits (92), Expect = 0.25
Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 569 KKRNRLEHQRLNDLVFVRYNLMLENR-NNKIRNYDPINDELLDDHHDNWVLEDS 621
++ N E QR++ L FV+YNL L++R +K + +DP++ + + D D+WV++ S
Sbjct: 670 QRMNLFERQRMHHLTFVQYNLRLQHRQQHKTKAFDPVSVDNI-DIVDDWVVDRS 722
>dbj|BAB03069.1| transposase-like protein [Arabidopsis thaliana]
gi|28827622|gb|AAO50655.1| unknown protein [Arabidopsis
thaliana] gi|28393360|gb|AAO42104.1| unknown protein
[Arabidopsis thaliana] gi|42565113|ref|NP_188861.2| hAT
dimerisation domain-containing protein [Arabidopsis
thaliana]
Length = 761
Score = 37.4 bits (85), Expect = 1.6
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 569 KKRNRLEHQRLNDLVFVRYNLMLENRNNKIRNYDPINDELLDDHHDNWVLED 620
+ +N +E QRLNDLVFV+YN+ L ++ D + D L H + VLED
Sbjct: 646 ESKNSIERQRLNDLVFVQYNMRLRRIGSESSGDDTV-DPL--SHSNMEVLED 694
>gb|AAV31197.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1086
Score = 36.6 bits (83), Expect = 2.7
Identities = 19/45 (42%), Positives = 27/45 (59%), Gaps = 4/45 (8%)
Query: 564 AYSLKKKRNRLEHQRLNDLVFVRYNLMLE----NRNNKIRNYDPI 604
A+ K RNRL H++LN LV+V YNL L N ++ + DP+
Sbjct: 772 AFVHTKVRNRLTHKKLNKLVYVNYNLRLRIQQANAQIRVEDDDPL 816
>gb|AAK98693.1| Putative transposable element [Oryza sativa]
Length = 891
Score = 36.2 bits (82), Expect = 3.6
Identities = 20/41 (48%), Positives = 26/41 (62%), Gaps = 2/41 (4%)
Query: 564 AYSLKKKRNRLEHQRLNDLVFVRYNLML--ENRNNKIRNYD 602
A+ K RNRL H++LN LV+V YNL L + N +IR D
Sbjct: 660 AFVHTKVRNRLTHKKLNKLVYVNYNLRLRIQQANAQIRCLD 700
>emb|CAA83589.1| MLG72 [Streptococcus sp. 'group G'] gi|632187|pir||S43554
plasminogen-binding protein MLG72 - Streptococcus sp.
(fragment)
Length = 472
Score = 35.8 bits (81), Expect = 4.7
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 567 LKKKRNRLEHQRLNDLV---FVRYNLMLENRNNKIRNYDPINDELLDDHHDNWVLEDSPP 623
++K+R R E+++L++LV YN +L+ N+ ++ + +ND L N +LE+
Sbjct: 55 IEKERLRKENEQLDELVRKEVAEYNSLLDKHNSLVKKMEVVNDSLQATERANELLENK-- 112
Query: 624 FLTVEELESLRNDL 637
++E + L DL
Sbjct: 113 ---LKENQDLNQDL 123
>emb|CAA42694.1| M protein [Streptococcus sp.]
Length = 441
Score = 35.8 bits (81), Expect = 4.7
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 567 LKKKRNRLEHQRLNDLV---FVRYNLMLENRNNKIRNYDPINDELLDDHHDNWVLEDSPP 623
++K+R R E+++L++LV YN +L+ N+ ++ + +ND L N +LE+
Sbjct: 67 IEKERLRKENEQLDELVRKEVAEYNSLLDKHNSLVKKMEVVNDSLQATERANELLENK-- 124
Query: 624 FLTVEELESLRNDL 637
++E + L DL
Sbjct: 125 ---LKENQDLNQDL 135
>gb|AAC97809.1| ORF MSV089 Putative NTPase, Rabbit fibroma virus C5 (vaccinia D5R)
homolog, similar to PIR:G41700 [Melanoplus sanguinipes
entomopoxvirus] gi|11362316|pir||T28250 ORF MSV089
probable NTPase, Rabbit fibroma virus C5 (vaccinia D5R)
homolog - Melanoplus sanguinipes entomopoxvirus
gi|9631496|ref|NP_048160.1| ORF MSV089 Putative NTPase,
Rabbit fibroma virus C5 (vaccinia D5R) homolog, similar
to PIR:G41700 [Melanoplus sanguinipes entomopoxvirus]
Length = 834
Score = 35.8 bits (81), Expect = 4.7
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 567 LKKKRNRLEHQRLNDLVFVRYNLMLENRNNKIRNYDPI---NDELLDDHHDNWVLEDSPP 623
L KK+ LE + +N + + + +LE NN I N D I ++ +L+++HD + L
Sbjct: 16 LDKKKCILEEEYVNQIDKLTLDELLEKINNAIENNDSIEEYHEIILNEYHDRFKL----- 70
Query: 624 FLTVEELESLRNDLANMTIQPISNDIGMYVFS 655
F +E + +D + T + ++I ++ S
Sbjct: 71 FFDIELKKKYNSDYFDSTFENFKDEISSFLAS 102
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.366 0.162 0.645
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 914,309,640
Number of Sequences: 2540612
Number of extensions: 32493504
Number of successful extensions: 175175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 175168
Number of HSP's gapped (non-prelim): 13
length of query: 674
length of database: 863,360,394
effective HSP length: 135
effective length of query: 539
effective length of database: 520,377,774
effective search space: 280483620186
effective search space used: 280483620186
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 79 (35.0 bits)
Medicago: description of AC146940.4