BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146910.6 - phase: 0
(385 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79259.1| F12K21.14 [Arabidopsis thaliana] gi|25301710|pir|... 417 e-115
emb|CAB81200.1| putative retrotransposon polyprotein [Arabidopsi... 411 e-113
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 408 e-112
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia... 405 e-112
dbj|BAB11447.1| polyprotein-like [Arabidopsis thaliana] 404 e-111
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 402 e-110
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 400 e-110
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf... 395 e-108
gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsi... 392 e-107
gb|AAC62795.1| contains similarity to retroviral aspartyl protea... 378 e-103
gb|AAT40550.1| putative receptor kinase [Solanum demissum] 373 e-102
pir||G86301 probable retroelement polyprotein [imported] - Arabi... 373 e-102
ref|XP_470025.1| putative polyprotein [Oryza sativa (japonica cu... 367 e-100
dbj|BAD99221.1| polypepetide with reverse transcriptase and RNas... 367 e-100
gb|AAU89728.1| putative retroelement pol polyprotein-like [Solan... 365 e-99
ref|NP_918613.1| polyprotein [Oryza sativa (japonica cultivar-gr... 365 1e-99
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 361 2e-98
gb|AAR24647.1| At2g23330 [Arabidopsis thaliana] gi|22655202|gb|A... 361 2e-98
emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa (japonica cultivar... 357 3e-97
emb|CAB79271.1| putative protein [Arabidopsis thaliana] gi|30212... 357 3e-97
>gb|AAF79259.1| F12K21.14 [Arabidopsis thaliana] gi|25301710|pir||C86469 protein
F12K21.14 [imported] - Arabidopsis thaliana
Length = 427
Score = 417 bits (1073), Expect = e-115
Identities = 206/388 (53%), Positives = 274/388 (70%), Gaps = 6/388 (1%)
Query: 1 MKIPQGL-----EGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
MK+P G + +PP+ VC+L KS+YGLKQASR+W++K S L+ G+ D TLF
Sbjct: 38 MKLPDGYADIKGDSLPPNAVCRLKKSIYGLKQASRQWFKKFSESLLKLGFMKQQGDHTLF 97
Query: 56 IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
++ S LLVYVDDIV+A + +L F +++LG LK+FLGLEVA + +
Sbjct: 98 VRCQGSDFIALLVYVDDIVIASTTESLAISLTEALKESFKLRELGPLKYFLGLEVARTTE 157
Query: 116 GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
GI++CQ++Y L+LL G L CKPS+IPM P+ RL + D DA YR+LVG+L+YLT
Sbjct: 158 GISLCQRKYALELLTSAGMLDCKPSTIPMTPNLRLSKADGVLLEDAEMYRSLVGRLMYLT 217
Query: 176 STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
TRPDI+F V +LCQF +P +H A +KVL+Y+K + G GLF+ DS L L GY+DAD
Sbjct: 218 ITRPDITFAVNKLCQFSSAPRTSHLTAVYKVLQYIKGTVGQGLFYSADSDLTLKGYTDAD 277
Query: 236 WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
WG CPD+RRS TG+ F+G SL+SW+SKKQ TVSRSS+EAEYRALA A+CE+ WL LL
Sbjct: 278 WGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLFTLLI 337
Query: 296 DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
L V S VP L DS +A++IA NPVFHERTKH++IDCH VR+KL +G ++L + +++
Sbjct: 338 ALRVATS-VPILYSDSTAAVYIAINPVFHERTKHIEIDCHTVRDKLDNGQLKLLHVKTED 396
Query: 356 QIADILTKALHPASFNHLIAKLSLLNIY 383
Q+ADILTK L P F HL++K+SL NIY
Sbjct: 397 QVADILTKPLFPHQFTHLLSKMSLHNIY 424
>emb|CAB81200.1| putative retrotransposon polyprotein [Arabidopsis thaliana]
gi|4539373|emb|CAB40067.1| putative retrotransposon
polyprotein [Arabidopsis thaliana] gi|7486142|pir||T04294
hypothetical protein F25I24.200 - Arabidopsis thaliana
Length = 1203
Score = 411 bits (1057), Expect = e-113
Identities = 198/372 (53%), Positives = 270/372 (72%), Gaps = 5/372 (1%)
Query: 1 MKIPQGLE-----GIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
M +PQG +P VC+L KSLYGLKQASR+WY++LS + A + +D T+F
Sbjct: 649 MSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFLGANFIQSPADNTMF 708
Query: 56 IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
+K + ++I V+LVYVDD+++A ND ++ +K L + F IKDLG +FFLGLE+A S++
Sbjct: 709 VKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIARSSE 768
Query: 116 GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
GI++CQ++Y +LL G GCKPSSIPMDP+ L ++ +A+ YR LVG+LLYL
Sbjct: 769 GISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYLC 828
Query: 176 STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
TRPDI+F V L QFL +PT H +AAHKVLRYLK +PG GL + S L L G+SDAD
Sbjct: 829 ITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYSASSELCLNGFSDAD 888
Query: 236 WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
WG C D+RRS+TG+C ++G SL++WKSKKQ VSRSS+E+EYR+LA ATCE+ WL LL
Sbjct: 889 WGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWLQQLLK 948
Query: 296 DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
DL+VT + L CD++SALH+A+NPVFHERTKH++IDCH VR+++++G ++ + +
Sbjct: 949 DLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTLHVPTGN 1008
Query: 356 QIADILTKALHP 367
Q+ADILTK LHP
Sbjct: 1009 QLADILTKPLHP 1020
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301701|pir||E84589 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1461
Score = 408 bits (1048), Expect = e-112
Identities = 205/388 (52%), Positives = 273/388 (69%), Gaps = 6/388 (1%)
Query: 1 MKIPQGLEGI-----PPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
MK+P G I PP+ VC+L KS+YGLKQASR+W+ K S+ L++ G+ D TLF
Sbjct: 1071 MKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLF 1130
Query: 56 IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
++ S VLLVYVDDIV+A Q + +L F +++LG LK+FLGLEVA +++
Sbjct: 1131 VRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSE 1190
Query: 116 GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
GI++ Q++Y L+LL L CKPSSIPM P+ RL ++D D YR LVGKL+YLT
Sbjct: 1191 GISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLT 1250
Query: 176 STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
TRPDI+F V +LCQF +P H A +KVL+Y+K + G GLF+ + L L GY+DAD
Sbjct: 1251 ITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYTDAD 1310
Query: 236 WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
WG CPD+RRS TG+ F+G SL+SW+SKKQ TVSRSS+EAEYRALA A+CE+ WL LL
Sbjct: 1311 WGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLSTLLL 1370
Query: 296 DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
L V S VP L DS +A++IA+NPVFHERTKH++IDCH VREKL +G ++L + +++
Sbjct: 1371 ALRVH-SGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVKTKD 1429
Query: 356 QIADILTKALHPASFNHLIAKLSLLNIY 383
Q+ADILTK L P F HL++K+S+ NI+
Sbjct: 1430 QVADILTKPLFPYQFAHLLSKMSIQNIF 1457
>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein
[Arabidopsis thaliana] gi|7444421|pir||A71444 probable
LTR retrotransposon - Arabidopsis thaliana
Length = 1433
Score = 405 bits (1042), Expect = e-112
Identities = 197/390 (50%), Positives = 265/390 (67%), Gaps = 5/390 (1%)
Query: 1 MKIPQGL-----EGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
MKIP G E +PPH +C+L KS+YGLKQASR+WY KLS+ L G+ +D TLF
Sbjct: 1041 MKIPPGYADLVGEALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLF 1100
Query: 56 IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
IK + +LVYVDDI++ N D + L + F ++DLG K+FLG+E+A S K
Sbjct: 1101 IKYANGVLMGVLVYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEK 1160
Query: 116 GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
GI+ICQ++Y L+LL+ TG LG KPSSIP+DPS +L+++D P D++ YR LVGKL+YL
Sbjct: 1161 GISICQRKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQ 1220
Query: 176 STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
TRPDI++ V LCQF +PT+ H A HKVLRYLK + G GLF+ D L GY+D+D
Sbjct: 1221 ITRPDIAYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSD 1280
Query: 236 WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
+G C D+RR + YC FIG LVSWKSKKQ TVS S++EAE+RA++ T E+ WL L
Sbjct: 1281 FGSCTDSRRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFD 1340
Query: 296 DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
D V L CD+ +ALHI +N VFHERTK +++DC+ RE ++SG ++ + + E
Sbjct: 1341 DFKVPFIPPAYLYCDNTAALHIVNNSVFHERTKFVELDCYKTREAVESGFLKTMFVETGE 1400
Query: 356 QIADILTKALHPASFNHLIAKLSLLNIYQP 385
Q+AD LTKA+HPA F+ LI K+ + NI+ P
Sbjct: 1401 QVADPLTKAIHPAQFHKLIGKMGVCNIFAP 1430
>dbj|BAB11447.1| polyprotein-like [Arabidopsis thaliana]
Length = 509
Score = 404 bits (1039), Expect = e-111
Identities = 191/376 (50%), Positives = 268/376 (70%)
Query: 10 IPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTTSTITVLLVY 69
+PP+ VC+L KS+YGLKQASR+WY+ LS L+ G+ D TLF+K T++ I +L+Y
Sbjct: 124 LPPNPVCRLHKSIYGLKQASRQWYKCLSQTLLDDGFQQSYVDNTLFVKITSTAIVAMLIY 183
Query: 70 VDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITICQQQYCLDLL 129
VDDI++ N+ + + +K+ L + IKDLG KFFLGLE+A ++ GI+ICQ++YCLDLL
Sbjct: 184 VDDILIVSNNDEVVCAVKSVLAARYKIKDLGPAKFFLGLEIARNSDGISICQRKYCLDLL 243
Query: 130 NKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPDISFTVQQLC 189
+G LGCKP S+PMDP L +D D YR L+G+LLYL TRPDI+F V L
Sbjct: 244 ANSGLLGCKPKSVPMDPKVVLTKDLGTLLEDGRPYRELIGRLLYLCVTRPDITFAVHNLS 303
Query: 190 QFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSITGY 249
QFL PT H AAH+VL+YLK +PG GLF + L+L G++DADWG C D+RRS++G
Sbjct: 304 QFLSCPTNVHLHAAHQVLKYLKNNPGQGLFSSAGTELYLNGFADADWGTCLDSRRSVSGV 363
Query: 250 CFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVTCSKVPALVC 309
C F+G SL++WKSKKQ+ S SS+EAEYR++A AT EL WL +L DL+V L C
Sbjct: 364 CVFLGTSLITWKSKKQEVASGSSTEAEYRSMAVATKELLWLAQMLKDLHVEMEFQVKLFC 423
Query: 310 DSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTKALHPAS 369
D++SA+HIA+N VFHERTKH++IDCH R+++++G +++ + ++ Q+ADILTKAL P
Sbjct: 424 DNKSAMHIANNSVFHERTKHVEIDCHTTRDRVKNGFLKVLHVDTENQLADILTKALQPGP 483
Query: 370 FNHLIAKLSLLNIYQP 385
F ++ +LS+ +++ P
Sbjct: 484 FRSILGRLSVSSLFLP 499
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301694|pir||E84535 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1454
Score = 402 bits (1032), Expect = e-110
Identities = 198/388 (51%), Positives = 270/388 (69%), Gaps = 6/388 (1%)
Query: 1 MKIPQGL---EGI--PPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
MKIP+G +GI P + V +L +S+YGLKQASR+W++K S L+S G+ D TLF
Sbjct: 1064 MKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLF 1123
Query: 56 IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
+K ++LVYVDDIV+A + L F ++DLG LK+FLGLEVA +
Sbjct: 1124 LKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTA 1183
Query: 116 GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
GI+ICQ++Y L+LL TG L CKP S+PM P+ ++ +DD + D +YR +VGKL+YLT
Sbjct: 1184 GISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLT 1243
Query: 176 STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
TRPDI+F V +LCQF +P TH AA++VL+Y+K + G GLF+ S L L G++D+D
Sbjct: 1244 ITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSD 1303
Query: 236 WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
W C D+RRS T + F+G SL+SW+SKKQ TVSRSS+EAEYRALA ATCE+ WL LL
Sbjct: 1304 WASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLV 1363
Query: 296 DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
L + VP L DS +A++IA+NPVFHERTKH+ +DCH VRE+L +G ++L + +++
Sbjct: 1364 SLQAS-PPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTED 1422
Query: 356 QIADILTKALHPASFNHLIAKLSLLNIY 383
Q+ADILTK L P F HL +K+S+LNI+
Sbjct: 1423 QVADILTKPLFPYQFEHLKSKMSILNIF 1450
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626). [Arabidopsis thaliana]
gi|25301690|pir||G96722 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana
Length = 1315
Score = 400 bits (1027), Expect = e-110
Identities = 194/388 (50%), Positives = 270/388 (69%), Gaps = 5/388 (1%)
Query: 1 MKIPQGL-----EGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
M++PQG + +PP+ VC+L KSLYGLKQASR+WY K S L+ G+ D T F
Sbjct: 925 MRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCF 984
Query: 56 IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
+K + +LVY+DDI++A N+ + ++K+ + + F ++DLG LK+FLGLE+ S K
Sbjct: 985 LKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDK 1044
Query: 116 GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
GI I Q++Y LDLL++TG LGCKPSSIPMDPS D +V+ YR L+G+L+YL
Sbjct: 1045 GIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLN 1104
Query: 176 STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
TRPDI+F V +L QF +P H +A +K+L+Y+K + G GLF+ S L L Y++AD
Sbjct: 1105 ITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANAD 1164
Query: 236 WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
+ C D+RRS +GYC F+G SL+ WKS+KQ VS+SS+EAEYR+L+ AT EL WL L
Sbjct: 1165 YNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLK 1224
Query: 296 DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
+L V SK L CD+++A+HIA+N VFHERTKH++ DCH VRE+L GL EL+ I+++
Sbjct: 1225 ELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTEL 1284
Query: 356 QIADILTKALHPASFNHLIAKLSLLNIY 383
QIAD TK L+P+ F+ LI+K+ LLNI+
Sbjct: 1285 QIADPFTKPLYPSHFHRLISKMGLLNIF 1312
>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm, score:
11.19) [Arabidopsis thaliana] gi|7486705|pir||T01879
hypothetical protein F8M12.17 - Arabidopsis thaliana
Length = 1633
Score = 395 bits (1015), Expect = e-108
Identities = 193/382 (50%), Positives = 267/382 (69%), Gaps = 21/382 (5%)
Query: 1 MKIPQGLE-----GIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
M +PQG +P VC+L KSLYGLKQASR+WY++LS + A + +D T+F
Sbjct: 1063 MSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFLGANFIQSPADNTMF 1122
Query: 56 IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
+K + ++I V+LVYVDD+++A ND ++ +K L + F IKDLG +FFLGLE+A S++
Sbjct: 1123 VKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIARSSE 1182
Query: 116 GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
GI++CQ++Y +LL G GCKPSSIPMDP+ L ++ +A+ YR LVG+LLYL
Sbjct: 1183 GISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYLC 1242
Query: 176 STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
TRPDI+F V L QFL +PT H +AAHKVLRYLK +PG DAD
Sbjct: 1243 ITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPG----------------QDAD 1286
Query: 236 WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
WG C D+RRS+TG+C ++G SL++WKSKKQ VSRSS+E+EYR+LA ATCE+ WL LL
Sbjct: 1287 WGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWLQQLLK 1346
Query: 296 DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
DL+VT + L CD++SALH+A+NPVFHERTKH++IDCH VR+++++G ++ + +
Sbjct: 1347 DLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTLHVPTGN 1406
Query: 356 QIADILTKALHPASFNHLIAKL 377
Q+ADILTK LHP F+ L+ ++
Sbjct: 1407 QLADILTKPLHPGPFHSLLKRI 1428
>gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301676|pir||B84534 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1264
Score = 392 bits (1006), Expect = e-107
Identities = 194/389 (49%), Positives = 269/389 (68%), Gaps = 6/389 (1%)
Query: 1 MKIPQGL---EGI--PPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
MK+P+G +GI P + VC+L +S+YGLKQASR+W++K S L+S + D TLF
Sbjct: 874 MKLPEGYAERKGIILPSNVVCRLKRSIYGLKQASRQWFKKFSASLLSLRFFKTHGDHTLF 933
Query: 56 IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
+K V+LVYVDDIV+A + + L N+F ++DLG LK+FLGLE+ +
Sbjct: 934 LKDCGGEYVVVLVYVDDIVIASTNEAAAVQLSQDLQNLFKLRDLGDLKYFLGLEITRTEA 993
Query: 116 GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
GI++CQ++Y L+LL TG + CK S+PM P+ +L + D E D +YR +VG L+YLT
Sbjct: 994 GISLCQRKYALELLASTGMINCKLVSVPMVPNLKLMKVDGELLEDREQYRRIVGTLMYLT 1053
Query: 176 STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
TRPDI+F V +LCQF +PT H +AAH+VL+Y+K + G GLF+ S L L G++D+D
Sbjct: 1054 ITRPDITFAVNKLCQFSYAPTTAHLQAAHRVLQYIKGTVGQGLFYSASSDLTLKGFADSD 1113
Query: 236 WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
W CPD+R S TG+ F+G SL+S +SKKQ VSRSS+EAEYRALA ATCEL WL LL
Sbjct: 1114 WASCPDSRHSTTGFTMFVGDSLISLRSKKQHVVSRSSAEAEYRALALATCELVWLHTLLA 1173
Query: 296 DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
L + +P L DS +A++IA NPVFHERTKH++IDCH VREK+ G ++L + +++
Sbjct: 1174 SL-TAATTIPILFSDSTAAIYIAINPVFHERTKHIEIDCHTVREKIDDGELKLLHVRTED 1232
Query: 356 QIADILTKALHPASFNHLIAKLSLLNIYQ 384
Q+ADI+TK L P F HL +K+S+LNI++
Sbjct: 1233 QVADIMTKPLFPNQFEHLKSKMSILNIFE 1261
>gb|AAC62795.1| contains similarity to retroviral aspartyl proteases (Pfam: rvp.hmm,
score: 11.80) [Arabidopsis thaliana]
gi|7487550|pir||T01956 hypothetical protein T2L5.9 -
Arabidopsis thaliana
Length = 1244
Score = 378 bits (970), Expect = e-103
Identities = 190/388 (48%), Positives = 263/388 (66%), Gaps = 23/388 (5%)
Query: 1 MKIPQGL-----EGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
M++P+G + +P + V +L K++YGLKQASR D TLF
Sbjct: 872 MRLPEGYADNKGDQLPKNVVLRLKKTIYGLKQASRH------------------GDHTLF 913
Query: 56 IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
++ +LVYVDDIV+A + N+L F ++DLG LK+FLGLE+A +A
Sbjct: 914 VRCFGGEFLAVLVYVDDIVIASTIEGVAAQLTNALKESFKLRDLGPLKYFLGLEIARTAA 973
Query: 116 GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
GI+ICQ++Y L+LL TG L CKPS+IPM P+ +L + D E D YR+LVGKL+YLT
Sbjct: 974 GISICQRKYALELLAFTGMLDCKPSTIPMVPNLKLSKADGELLEDREFYRSLVGKLMYLT 1033
Query: 176 STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
TRPDI+F V +LCQ+ +P +H +KVL+Y+K + G GLF+ D L L G++D+D
Sbjct: 1034 ITRPDITFAVNKLCQYSAAPRTSHLTTVYKVLQYIKGTVGQGLFYSSDPDLTLKGFADSD 1093
Query: 236 WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
WG CPDTRRS TG F+G SL++W+SKKQ TVSRSS+EAEYRALA A+CE+ WL LL
Sbjct: 1094 WGTCPDTRRSTTGLTMFLGSSLITWRSKKQPTVSRSSAEAEYRALALASCEMVWLASLLL 1153
Query: 296 DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
DL + VP + DS +A++IA+NPVFHERTKH++IDCH+VRE+L GL+ + + +++
Sbjct: 1154 DLKIITGSVPIVFSDSTAAIYIATNPVFHERTKHIEIDCHLVRERLDKGLIRMLHVRTED 1213
Query: 356 QIADILTKALHPASFNHLIAKLSLLNIY 383
Q+ADILTK L P F++L++K+SL NI+
Sbjct: 1214 QVADILTKPLFPHQFSYLMSKMSLHNIF 1241
>gb|AAT40550.1| putative receptor kinase [Solanum demissum]
Length = 1358
Score = 373 bits (958), Expect = e-102
Identities = 192/388 (49%), Positives = 254/388 (64%), Gaps = 3/388 (0%)
Query: 1 MKIPQGL--EGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKR 58
M+ P G +G VC+L +SLYGLKQ+ R W+ K S + G +D ++F +
Sbjct: 970 MEQPPGFVAQGESSSLVCRLRRSLYGLKQSPRAWFGKFSTVIQEFGMTRSGADHSVFYRH 1029
Query: 59 TT-STITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGI 117
+ S L+VYVDDIV+ GND D I +K L F KDLG LK+FLG+EVA S GI
Sbjct: 1030 SAPSRCIYLVVYVDDIVITGNDQDGITDLKQHLFKHFQTKDLGRLKYFLGIEVAQSRSGI 1089
Query: 118 TICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTST 177
I Q++Y LD+L +TG +GC+P PMDP+ +L EP + YR LVGKL YLT T
Sbjct: 1090 VISQRKYALDILEETGMMGCRPVDTPMDPNVKLLPGQGEPLSNPERYRRLVGKLNYLTVT 1149
Query: 178 RPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWG 237
RPDISF V + QF+ SP +H++A ++LRY+K++PG GL F H++GY+DADW
Sbjct: 1150 RPDISFPVSVVSQFMTSPCDSHWEAVVRILRYIKSAPGKGLLFEDQGHEHIIGYTDADWA 1209
Query: 238 GCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDL 297
G P RRS +GYC +G +LVSWKSKKQ V+RSS+E+EYRA+A ATCEL W+ LL +L
Sbjct: 1210 GSPSDRRSTSGYCVLVGGNLVSWKSKKQNVVARSSAESEYRAMATATCELVWIKQLLGEL 1269
Query: 298 NVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQI 357
LVCD+Q+ALHIASNPVFHERTKH++IDCH VREK+ SG + + S +Q+
Sbjct: 1270 KFGKVDKMELVCDNQAALHIASNPVFHERTKHIEIDCHFVREKILSGDIVTKFVKSNDQL 1329
Query: 358 ADILTKALHPASFNHLIAKLSLLNIYQP 385
ADI TK+L N++ KL ++Y P
Sbjct: 1330 ADIFTKSLTCPRINYICNKLGTYDLYAP 1357
>pir||G86301 probable retroelement polyprotein [imported] - Arabidopsis thaliana
gi|9989054|gb|AAG10817.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 373 bits (957), Expect = e-102
Identities = 175/361 (48%), Positives = 257/361 (70%)
Query: 4 PQGLEGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTTSTI 63
P+ + PP+ VC+L KSLYGLKQASR+WY K S L + G+ + D TLF +++ ++
Sbjct: 1047 PRQGDSFPPNAVCRLKKSLYGLKQASRQWYLKFSESLKALGFTQSSGDHTLFTRKSKNSY 1106
Query: 64 TVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITICQQQ 123
+LVYVDDI++A + E +L++++L ++DLG L++FLGLE+A + GI+ICQ++
Sbjct: 1107 MAVLVYVDDIIIASSCDRETELLRDALQRSSKLRDLGTLRYFLGLEIARNTDGISICQRK 1166
Query: 124 YCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPDISF 183
Y L+LL +TG LGCK SS+PM+P+Q+L ++D E DA YR LVGKL+YLT TRPDI++
Sbjct: 1167 YTLELLAETGLLGCKSSSVPMEPNQKLSQEDGELIDDAEHYRKLVGKLMYLTFTRPDITY 1226
Query: 184 TVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTR 243
V +LCQF +P H KA +K++ YLK + G GLF+ + L L G++D+D+ C D+R
Sbjct: 1227 AVHRLCQFTSAPRVPHLKAVYKIIYYLKGTVGQGLFYSANVDLKLSGFADSDFSSCSDSR 1286
Query: 244 RSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVTCSK 303
+ TGYC F+G SLV+WKSKKQ+ +S SS+EAEY+A++ A E+ WL +LL DL + S+
Sbjct: 1287 KLTTGYCMFLGTSLVAWKSKKQEVISMSSAEAEYKAMSMAVREMMWLRFLLEDLWIDVSE 1346
Query: 304 VPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTK 363
L CD+ +A+HIA+NPVFHERTKH++ D H +REK+ GL+ + ++ Q+ADI K
Sbjct: 1347 ASVLYCDNTAAIHIANNPVFHERTKHIERDYHHIREKIILGLIRTLHVRTENQLADIPYK 1406
Query: 364 A 364
+
Sbjct: 1407 S 1407
>ref|XP_470025.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|30103001|gb|AAP21414.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1393
Score = 367 bits (943), Expect = e-100
Identities = 181/386 (46%), Positives = 259/386 (66%), Gaps = 2/386 (0%)
Query: 1 MKIPQGLEGIPP-HKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRT 59
M+IP G KVCKL KSLYGLKQ+ R W+++ H + GY+ D T+F K
Sbjct: 1008 MEIPPGFGNSQTVGKVCKLKKSLYGLKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFYKHR 1067
Query: 60 TSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITI 119
+ IT+L VYVDDIV+ G+D++EI+ +K L F +KDLG L++FLG+E+A S+KGI +
Sbjct: 1068 GTHITILAVYVDDIVITGDDVEEIRCLKERLGKAFEVKDLGPLRYFLGIEIARSSKGIVL 1127
Query: 120 CQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRP 179
Q++Y LDLL TG LGC+ S+ P+D + +L +P VD Y+ LVG+L+YL TRP
Sbjct: 1128 SQRKYVLDLLTDTGMLGCRASTTPIDRNHQLCAQSGDP-VDKEAYQRLVGRLIYLCHTRP 1186
Query: 180 DISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGC 239
DIS+ V + +++ P H HK+LRYLK +PG GL+F ++ L++ GY DADW
Sbjct: 1187 DISYAVSVVSRYMHDPRTGHLDVVHKILRYLKGTPGKGLWFRKNGHLNVEGYCDADWASS 1246
Query: 240 PDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNV 299
D RRS +GYC F+G +LVSW+SKKQ V+RS++EAEYRA+A + E+ W+ LLT+L V
Sbjct: 1247 MDDRRSTSGYCVFVGGNLVSWRSKKQAVVARSTAEAEYRAMALSLSEMLWMRSLLTELRV 1306
Query: 300 TCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIAD 359
S L CD++SA+ IA+NPV H+RTKH++ID ++EK+ SG++ L I S EQ+AD
Sbjct: 1307 LRSDTVMLHCDNKSAISIANNPVQHDRTKHVEIDRFFIKEKIDSGVLRLEYIKSCEQLAD 1366
Query: 360 ILTKALHPASFNHLIAKLSLLNIYQP 385
LTK L P+ + K+ +++I+ P
Sbjct: 1367 CLTKGLGPSEIQSICNKMGMIDIFCP 1392
>dbj|BAD99221.1| polypepetide with reverse transcriptase and RNaseH domains [Petunia
x hybrida]
Length = 389
Score = 367 bits (943), Expect = e-100
Identities = 185/379 (48%), Positives = 254/379 (66%)
Query: 1 MKIPQGLEGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTT 60
M+ P G+ P VC+L KSLYGLKQASR+WY +LS L + G++S +D +LF K +
Sbjct: 1 MRFPPGVTPPTPSHVCRLRKSLYGLKQASRQWYARLSSALGTRGFSSSMNDYSLFYKGSA 60
Query: 61 STITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITIC 120
IT+L+VYVDDI++ GN+ EI +K+ L + F IKDLG + +FLG+E+ H G+ +
Sbjct: 61 GLITILVVYVDDILITGNNHTEISALKSFLDSEFRIKDLGEVSYFLGMEILHEPDGLIVT 120
Query: 121 QQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPD 180
Q+++ +DLL++ +L + + P+DPS +L E D + YR LVGKL YLT TRPD
Sbjct: 121 QRKFAMDLLSEYSSLSPRTVTTPLDPSLKLSSISGELLQDPTFYRRLVGKLNYLTHTRPD 180
Query: 181 ISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCP 240
ISF VQ L Q + SP + H +AA+ LRY++ +PG G+F + S L G+ DADW CP
Sbjct: 181 ISFAVQTLSQHMQSPRSGHLEAAYHTLRYIRNNPGLGIFLSSEQSFQLTGFCDADWASCP 240
Query: 241 DTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVT 300
D+RRSI+G+ +G +SWKSKKQQ VS SS+EAEYR+L E+ W+V LL DL+V
Sbjct: 241 DSRRSISGFFLTMGGCPLSWKSKKQQVVSLSSAEAEYRSLRRLVAEIAWIVRLLHDLSVD 300
Query: 301 CSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADI 360
S ++ CD+QSA+HIA NPVFHERTKH+++DCH VREKL GL+ L + S QIADI
Sbjct: 301 FSLPVSVHCDNQSAIHIAKNPVFHERTKHIELDCHFVREKLLDGLISLSFVPSSSQIADI 360
Query: 361 LTKALHPASFNHLIAKLSL 379
TK+L L+ KL +
Sbjct: 361 FTKSLTGPLHRSLMGKLGV 379
>gb|AAU89728.1| putative retroelement pol polyprotein-like [Solanum tuberosum]
Length = 1476
Score = 365 bits (938), Expect = e-99
Identities = 192/399 (48%), Positives = 271/399 (67%), Gaps = 16/399 (4%)
Query: 1 MKIPQGLE----GIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFI 56
M++PQG + G P KVC+L KSLYGLKQASR+W KL+ L++AG+ D +L +
Sbjct: 1061 MQLPQGFQYDKTGDP--KVCRLLKSLYGLKQASRQWNVKLTTALLAAGFQQSHLDYSLML 1118
Query: 57 KRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKG 116
KRT I ++L+YVDD+++ G+ L I K L F IKDLG L++FLG+E A +A G
Sbjct: 1119 KRTADGIVIVLIYVDDLLITGSSLQLIDDAKQVLKANFKIKDLGTLRYFLGMEFARNASG 1178
Query: 117 ITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYV----------DASEYRA 166
+ + Q++Y L+L++ G G KPS P++ +L + + +V D +EY+
Sbjct: 1179 MLMHQRKYALELISDLGLGGSKPSVTPVELHLKLTTREFDLHVGSSGADSLLADPTEYQR 1238
Query: 167 LVGKLLYLTSTRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSL 226
LVG+LLYLT TRPDISF VQ L QF+ +P +H +AA +V++Y+K +PG GL+ ++
Sbjct: 1239 LVGRLLYLTITRPDISFAVQHLSQFMHAPKVSHMEAAIRVVKYVKQAPGLGLYMAVQTAD 1298
Query: 227 HLLGYSDADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCE 286
L Y DADWG C +TR+SITGY G +L+SWKSKKQ T+SRSS+EAEYR+LA+ E
Sbjct: 1299 TLQAYCDADWGSCINTRKSITGYMIQFGSALLSWKSKKQPTISRSSAEAEYRSLASTVAE 1358
Query: 287 LQWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLM 346
L WL L +L++ S +L CDS++A+ IA+NPVFHERTKH+DIDCH +REK+Q+GL+
Sbjct: 1359 LVWLTGLFKELDMPLSLPVSLYCDSKAAIQIAANPVFHERTKHIDIDCHFIREKVQAGLV 1418
Query: 347 ELFPISSQEQIADILTKALHPASFNHLIAKLSLLNIYQP 385
+ + +QEQ ADILTK L A ++L++KL L NI+ P
Sbjct: 1419 MIHYLPTQEQPADILTKGLSSAQHSYLVSKLGLKNIFIP 1457
>ref|NP_918613.1| polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1554
Score = 365 bits (937), Expect = 1e-99
Identities = 180/384 (46%), Positives = 258/384 (66%), Gaps = 2/384 (0%)
Query: 1 MKIPQGLEGIPP-HKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRT 59
M+IP G KVCKL KSLYGLKQ+ R W+++ H + GY+ D T+F K
Sbjct: 1169 MEIPPGFGNSQTVGKVCKLKKSLYGLKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFYKHR 1228
Query: 60 TSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITI 119
+ IT+L VYVDDIV+ G+D++EI+ +K L F +KDLG L++FLG+E+A S+KGI +
Sbjct: 1229 GTHITILAVYVDDIVITGDDVEEIRCLKERLGKAFEVKDLGPLRYFLGIEIARSSKGIVL 1288
Query: 120 CQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRP 179
Q++Y LDLL TG LGC+ S+ P+D + +L +P VD Y+ LVG+L+YL TRP
Sbjct: 1289 SQRKYVLDLLTDTGMLGCRASTTPIDRNHQLCAQSGDP-VDKEAYQRLVGRLIYLCHTRP 1347
Query: 180 DISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGC 239
DIS+ V + +++ P H HK+LRYLK +PG GL+F ++ L++ GY DADW
Sbjct: 1348 DISYAVSVVSRYMHDPRTGHLDVVHKILRYLKGTPGKGLWFRKNGHLNVEGYCDADWASS 1407
Query: 240 PDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNV 299
D RRS +GYC F+G +LVSW+SKKQ V+RS++EAEYRA+A + E+ W+ LLT+L V
Sbjct: 1408 MDDRRSTSGYCVFVGGNLVSWRSKKQAVVARSTAEAEYRAMALSFSEMLWMRSLLTELRV 1467
Query: 300 TCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIAD 359
S L CD++SA+ IA+NPV H+RTKH++ID ++EK+ SG++ L I S EQ+AD
Sbjct: 1468 LRSDTVMLHCDNKSAISIANNPVQHDRTKHVEIDRFFIKEKIDSGVLRLEYIKSCEQLAD 1527
Query: 360 ILTKALHPASFNHLIAKLSLLNIY 383
LTK L P+ + K+ +++I+
Sbjct: 1528 CLTKGLGPSEIQSVCNKMGMIDIF 1551
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|7444418|pir||T00499 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1496
Score = 361 bits (927), Expect = 2e-98
Identities = 180/379 (47%), Positives = 255/379 (66%)
Query: 1 MKIPQGLEGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTT 60
M++P G + P KVC+L KSLYGLKQA R W+ KLS L + G+ D +LF +
Sbjct: 1111 MRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNG 1170
Query: 61 STITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITIC 120
TI +LVYVDD+++AGN+LD I K+ LH F +KDLG LK+FLGLEV+ G +
Sbjct: 1171 DTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCLS 1230
Query: 121 QQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPD 180
Q++Y LD++ +TG LGCKPS++P+ + +L + + +YR LVG+ +YLT TRPD
Sbjct: 1231 QRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRPD 1290
Query: 181 ISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCP 240
+S+ V L QF+ +P H++AA +++RYLK SP G+F DSSL + Y D+D+ CP
Sbjct: 1291 LSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINAYCDSDYNACP 1350
Query: 241 DTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVT 300
TRRS++ Y ++G S +SWK+KKQ TVS SS+EAEYRA+A EL+WL LL DL V
Sbjct: 1351 LTRRSLSAYVVYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGVH 1410
Query: 301 CSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADI 360
S L CDS++A+HIA+NPVFHERTKH++ DCH VR+ + L+ I +++Q+AD+
Sbjct: 1411 HSSPMKLHCDSEAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEHIYTEDQVADL 1470
Query: 361 LTKALHPASFNHLIAKLSL 379
LTK+L +F L++ L +
Sbjct: 1471 LTKSLPRPTFERLLSTLGV 1489
>gb|AAR24647.1| At2g23330 [Arabidopsis thaliana] gi|22655202|gb|AAM98191.1| unknown
protein [Arabidopsis thaliana]
Length = 776
Score = 361 bits (927), Expect = 2e-98
Identities = 180/379 (47%), Positives = 255/379 (66%)
Query: 1 MKIPQGLEGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTT 60
M++P G + P KVC+L KSLYGLKQA R W+ KLS L + G+ D +LF +
Sbjct: 391 MRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNG 450
Query: 61 STITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITIC 120
TI +LVYVDD+++AGN+LD I K+ LH F +KDLG LK+FLGLEV+ G +
Sbjct: 451 DTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCLS 510
Query: 121 QQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPD 180
Q++Y LD++ +TG LGCKPS++P+ + +L + + +YR LVG+ +YLT TRPD
Sbjct: 511 QRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRPD 570
Query: 181 ISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCP 240
+S+ V L QF+ +P H++AA +++RYLK SP G+F DSSL + Y D+D+ CP
Sbjct: 571 LSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINAYCDSDYNACP 630
Query: 241 DTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVT 300
TRRS++ Y ++G S +SWK+KKQ TVS SS+EAEYRA+A EL+WL LL DL V
Sbjct: 631 LTRRSLSAYVVYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGVH 690
Query: 301 CSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADI 360
S L CDS++A+HIA+NPVFHERTKH++ DCH VR+ + L+ I +++Q+AD+
Sbjct: 691 HSSPMKLHCDSEAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEHIYTEDQVADL 750
Query: 361 LTKALHPASFNHLIAKLSL 379
LTK+L +F L++ L +
Sbjct: 751 LTKSLPRPTFERLLSTLGV 769
>emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa (japonica cultivar-group)]
gi|50925209|ref|XP_472906.1| OSJNBb0011N17.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1262
Score = 357 bits (916), Expect = 3e-97
Identities = 174/386 (45%), Positives = 254/386 (65%), Gaps = 2/386 (0%)
Query: 1 MKIPQGLEGIPPH-KVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRT 59
M+IP G + KV +L KSLYGLKQ+ R W+++ + + GY D T+F +
Sbjct: 877 MEIPPGFATLQTKGKVLRLKKSLYGLKQSPRAWFDRFRRAMCAMGYKQCNGDHTVFYHHS 936
Query: 60 TSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITI 119
IT+L VYVDD+++ GND EI +K +L F +KDLG LK+FLG+E+A S +GI +
Sbjct: 937 GDHITILAVYVDDMIITGNDCSEITRLKQNLSKEFEVKDLGQLKYFLGIEIARSPRGIVL 996
Query: 120 CQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRP 179
Q++Y LDLL+ TG LGC+P+S P+D + +L + P V+ Y+ LVG+L+YL TRP
Sbjct: 997 SQRKYALDLLSDTGMLGCRPASTPVDQNHKLCAESGNP-VNKERYQRLVGRLIYLCHTRP 1055
Query: 180 DISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGC 239
DI++ V + +++ P + H A +++LRYLK SPG GL+F ++ L + GY DADW C
Sbjct: 1056 DITYAVSMVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLEVEGYCDADWASC 1115
Query: 240 PDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNV 299
PD RRS +GYC F+G +LVSW+SKKQ VSRS++EAEYRA++ + EL WL LL++L +
Sbjct: 1116 PDDRRSTSGYCVFVGGNLVSWRSKKQPVVSRSTAEAEYRAMSVSLSELLWLRNLLSELML 1175
Query: 300 TCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIAD 359
L CD++SA+ IA+NPV H+RTKH+++D ++EKL G++EL + S Q+AD
Sbjct: 1176 PVDTPMKLWCDNKSAISIANNPVQHDRTKHVELDRFFIKEKLDEGVLELEFVMSGGQVAD 1235
Query: 360 ILTKALHPASFNHLIAKLSLLNIYQP 385
TK L N K+ +++IY P
Sbjct: 1236 CFTKGLGVKECNSSCDKMGMIDIYHP 1261
>emb|CAB79271.1| putative protein [Arabidopsis thaliana] gi|3021268|emb|CAA18463.1|
putative protein [Arabidopsis thaliana]
gi|7485945|pir||T04833 hypothetical protein F21P8.50 -
Arabidopsis thaliana
Length = 1240
Score = 357 bits (916), Expect = 3e-97
Identities = 176/345 (51%), Positives = 234/345 (67%), Gaps = 5/345 (1%)
Query: 1 MKIPQGL-----EGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
MK+P G + +PP+ VC L KS+YGLKQASR+W+ K S LI G+ SD T F
Sbjct: 210 MKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYF 269
Query: 56 IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
+K T + +LVYVDDI++ N+ + +K+ L + F ++DLG LK+FLGLE+A SA
Sbjct: 270 LKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAA 329
Query: 116 GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
GI ICQ++Y LDLL++TG LGCKPSS+PMDPS +VDA YR L+G+L+YL
Sbjct: 330 GINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQ 389
Query: 176 STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
TR DISF V +L QF ++P H +A K+L Y+K + G GLF+ + + L +SDA
Sbjct: 390 ITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDAS 449
Query: 236 WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
+ C DTRRS GYC F+G SL+SWKSKKQQ VS+SS+EAEYRAL+ AT E+ WL
Sbjct: 450 FQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFR 509
Query: 296 DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREK 340
+L + SK L CD+ +A+HIA+N VFHERTKH++ DCH VRE+
Sbjct: 510 ELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 646,000,920
Number of Sequences: 2540612
Number of extensions: 25704927
Number of successful extensions: 59576
Number of sequences better than 10.0: 1609
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 56325
Number of HSP's gapped (non-prelim): 1856
length of query: 385
length of database: 863,360,394
effective HSP length: 130
effective length of query: 255
effective length of database: 533,080,834
effective search space: 135935612670
effective search space used: 135935612670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)
Medicago: description of AC146910.6