BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146910.2 + phase: 1 /pseudo/partial
(757 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64166.1| cleavage stimulation factor 77 [Arabidopsis thali... 935 0.0
gb|AAN86153.1| unknown protein [Arabidopsis thaliana] gi|2232963... 935 0.0
pir||F86312 hypothetical protein F11A6.10 [imported] - Arabidops... 840 0.0
gb|AAH77522.1| Cstf3-prov protein [Xenopus laevis] 365 4e-99
gb|AAH63376.1| Hypothetical protein MGC76035 [Xenopus tropicalis... 360 7e-98
ref|XP_508355.1| PREDICTED: similar to cleavage stimulation fact... 356 2e-96
gb|AAH45871.1| Cleavage stimulation factor, 3' pre-RNA, subunit ... 356 2e-96
emb|CAC48252.1| dJ85M6.1 (cleavage stimulation factor, 3' pre-RN... 356 2e-96
emb|CAH90038.1| hypothetical protein [Pongo pygmaeus] 356 2e-96
ref|NP_001317.1| cleavage stimulation factor subunit 3 [Homo sap... 356 2e-96
ref|NP_663504.1| cleavage stimulation factor, 3' pre-RNA, subuni... 355 3e-96
ref|XP_637594.1| hypothetical protein DDB0187069 [Dictyostelium ... 354 5e-96
emb|CAH65034.1| hypothetical protein [Gallus gallus] gi|60302784... 354 7e-96
gb|AAX33532.1| LD38348p [Drosophila melanogaster] gi|422428|pir|... 333 9e-90
emb|CAE57568.1| Hypothetical protein CBG00546 [Caenorhabditis br... 332 3e-89
ref|XP_342478.2| PREDICTED: similar to Cleavage stimulation fact... 332 4e-89
gb|AAC99436.1| suppressor of forked protein; Su(f) protein [Dros... 330 1e-88
gb|AAR01873.1| suppressor of forked [Drosophila subobscura] 329 2e-88
dbj|BAE00727.1| unnamed protein product [Macaca fascicularis] 310 1e-82
gb|AAT09321.1| SD14665p [Drosophila melanogaster] 211 7e-53
>gb|AAM64166.1| cleavage stimulation factor 77 [Arabidopsis thaliana]
Length = 734
Score = 935 bits (2417), Expect = 0.0
Identities = 489/765 (63%), Positives = 578/765 (74%), Gaps = 83/765 (10%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
IA+ATPIYEQLL LYPT+A+FWKQYVEA MAVNNDDA KQIFSRCLL CLQVPLW+CYIR
Sbjct: 22 IAQATPIYEQLLSLYPTSARFWKQYVEAQMAVNNDDATKQIFSRCLLTCLQVPLWQCYIR 81
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRM 142
FIRKV DKKGAEGQEET KAFEFML+Y+G+DIASGP+W EYIAFLKSLPA + E+ HR
Sbjct: 82 FIRKVYDKKGAEGQEETTKAFEFMLNYIGTDIASGPIWTEYIAFLKSLPALNLNEDLHRK 141
Query: 143 TVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
T +RKVY RAI+TPTHH+EQLWKDY++FE++V+++LAKGL++EYQPK+NSARAVYRERKK
Sbjct: 142 TALRKVYHRAILTPTHHVEQLWKDYENFENTVNRQLAKGLVNEYQPKFNSARAVYRERKK 201
Query: 203 FFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTG 262
+ +EIDWNMLAVPPTG+ K K +LS F N
Sbjct: 202 YIEEIDWNMLAVPPTGTSKEETQWVAWKKFLS---------FEKGNP------------- 239
Query: 263 RNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSIDAA 322
+RID ASS KR+I+ YEQCLM LYHYPDVWYDYA WH K+GS DAA
Sbjct: 240 --------------QRIDTASSTKRIIYAYEQCLMCLYHYPDVWYDYAEWHVKSGSTDAA 285
Query: 323 IKVFQRSLKALPDSEMLRYAYAELEESRGAIQAAKKIYENLLGDSENATALAHIQFIRFL 382
IKVFQR+LKA+PDSEML+YA+AE+EESRGAIQ+AKK+YEN+LG S N+ LAHIQ++RFL
Sbjct: 286 IKVFQRALKAIPDSEMLKYAFAEMEESRGAIQSAKKLYENILGASTNS--LAHIQYLRFL 343
Query: 383 RRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAHNVFEAGLKHFMHEPV 442
RR EGVE ARKYFLDARKSPSCTYHVY+A+A++AFC+DK+PK+AHN+FE GLK +M EPV
Sbjct: 344 RRAEGVEAARKYFLDARKSPSCTYHVYIAFATMAFCIDKEPKVAHNIFEEGLKLYMSEPV 403
Query: 443 YILEYADFLIRLNDDQNIRALFERALSSLPLEDSVEVWKRFVKFEQTYGDLASMLKVEQR 502
YIL+YADFL RLNDD+NIRALFERALS+LP+EDS EVWKRF++FEQTYGDLAS+LKVEQR
Sbjct: 404 YILKYADFLTRLNDDRNIRALFERALSTLPVEDSAEVWKRFIQFEQTYGDLASILKVEQR 463
Query: 503 RKEAF---GEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQEWLVKNTKKVEKSI 559
KEA GEE ++ ESSLQDVVSRYS+MDLWPC+SNDLD+L+RQE LVKN K
Sbjct: 464 MKEALSGKGEEGSSPPESSLQDVVSRYSYMDLWPCTSNDLDHLARQELLVKNLNKKA--- 520
Query: 560 MLNGTTFIDKGPVASIS-TTSSKVVYPDTSKMLIYDP--------KHNPGTGAAGT---- 606
G T + P A S +SSKVVYPDTS+M++ DP NP +A +
Sbjct: 521 ---GKTNLPHVPAAIGSVASSSKVVYPDTSQMVVQDPTKKSEFASSANPVAASASSTFPS 577
Query: 607 -----------NAFDEILKATPPALVAFLANLPSVDGPTPNVDIVLSICLQSDLPTGQSV 655
+ FDEI K TPPALVAFLANLP VDGPTPNVD+VLSICLQSD PTGQ+V
Sbjct: 578 TVTATATHGSASTFDEIPKTTPPALVAFLANLPIVDGPTPNVDVVLSICLQSDFPTGQTV 637
Query: 656 KVGIPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQ 715
K ++ G P+ ++ SG ++ G+S P ++ KRK D QEEDDT +VQ
Sbjct: 638 KQSFAAK---GNPPSQNDPSGPTR------GVSQRLPRDRRATKRKDSDRQEEDDTATVQ 688
Query: 716 SQPLPQDAFRIRQFQKARAGSTSQ---TGSVSYGSALSGDLSGST 757
SQPLP D FR+RQ +KAR +TS TGS SYGSA SG+LSGST
Sbjct: 689 SQPLPTDVFRLRQMRKARGIATSSQTPTGSTSYGSAFSGELSGST 733
>gb|AAN86153.1| unknown protein [Arabidopsis thaliana] gi|22329636|ref|NP_173218.2|
suppressor of forked protein family protein / SUF family
protein [Arabidopsis thaliana]
Length = 734
Score = 935 bits (2416), Expect = 0.0
Identities = 489/765 (63%), Positives = 577/765 (74%), Gaps = 83/765 (10%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
IA+ATPIYEQLL LYPT+A+FWKQYVEA MAVNNDDA KQIFSRCLL CLQVPLW+CYIR
Sbjct: 22 IAQATPIYEQLLSLYPTSARFWKQYVEAQMAVNNDDATKQIFSRCLLTCLQVPLWQCYIR 81
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRM 142
FIRKV DKKGAEGQEET KAFEFML+Y+G+DIASGP+W EYIAFLKSLPA + E+ HR
Sbjct: 82 FIRKVYDKKGAEGQEETTKAFEFMLNYIGTDIASGPIWTEYIAFLKSLPALNLNEDLHRK 141
Query: 143 TVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
T +RKVY RAI+TPTHH+EQLWKDY++FE++V+++LAKGL++EYQPK+NSARAVYRERKK
Sbjct: 142 TALRKVYHRAILTPTHHVEQLWKDYENFENTVNRQLAKGLVNEYQPKFNSARAVYRERKK 201
Query: 203 FFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTG 262
+ +EIDWNMLAVPPTG+ K K +LS F N
Sbjct: 202 YIEEIDWNMLAVPPTGTSKEETQWVAWKKFLS---------FEKGNP------------- 239
Query: 263 RNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSIDAA 322
+RID ASS KR+I+ YEQCLM LYHYPDVWYDYA WH K+GS DAA
Sbjct: 240 --------------QRIDTASSTKRIIYAYEQCLMCLYHYPDVWYDYAEWHVKSGSTDAA 285
Query: 323 IKVFQRSLKALPDSEMLRYAYAELEESRGAIQAAKKIYENLLGDSENATALAHIQFIRFL 382
IKVFQR+LKA+PDSEML+YA+AE+EESRGAIQ+AKK+YEN+LG S N+ LAHIQ++RFL
Sbjct: 286 IKVFQRALKAIPDSEMLKYAFAEMEESRGAIQSAKKLYENILGASTNS--LAHIQYLRFL 343
Query: 383 RRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAHNVFEAGLKHFMHEPV 442
RR EGVE ARKYFLDARKSPSCTYHVY+A+A++AFC+DK+PK+AHN+FE GLK +M EPV
Sbjct: 344 RRAEGVEAARKYFLDARKSPSCTYHVYIAFATMAFCIDKEPKVAHNIFEEGLKLYMSEPV 403
Query: 443 YILEYADFLIRLNDDQNIRALFERALSSLPLEDSVEVWKRFVKFEQTYGDLASMLKVEQR 502
YIL+YADFL RLNDD+NIRALFERALS+LP+EDS EVWKRF++FEQTYGDLAS+LKVEQR
Sbjct: 404 YILKYADFLTRLNDDRNIRALFERALSTLPVEDSAEVWKRFIQFEQTYGDLASILKVEQR 463
Query: 503 RKEAF---GEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQEWLVKNTKKVEKSI 559
KEA GEE ++ ESSLQDVVSRYS+MDLWPC+SNDLD+L+RQE LVKN K
Sbjct: 464 MKEALSGKGEEGSSPPESSLQDVVSRYSYMDLWPCTSNDLDHLARQELLVKNLNKKA--- 520
Query: 560 MLNGTTFIDKGPVASIS-TTSSKVVYPDTSKMLIYDP--------KHNPGTGAA------ 604
G T + P A S +SSKVVYPDTS+M++ DP NP +A
Sbjct: 521 ---GKTNLPHVPAAIGSVASSSKVVYPDTSQMVVQDPTKKSEFASSANPVAASASNTFPS 577
Query: 605 ---------GTNAFDEILKATPPALVAFLANLPSVDGPTPNVDIVLSICLQSDLPTGQSV 655
+ FDEI K TPPALVAFLANLP VDGPTPNVD+VLSICLQSD PTGQ+V
Sbjct: 578 TVTATATHGSASTFDEIPKTTPPALVAFLANLPIVDGPTPNVDVVLSICLQSDFPTGQTV 637
Query: 656 KVGIPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQ 715
K ++ G P+ ++ SG ++ G+S P ++ KRK D QEEDDT +VQ
Sbjct: 638 KQSFAAK---GNPPSQNDPSGPTR------GVSQRLPRDRRATKRKDSDRQEEDDTATVQ 688
Query: 716 SQPLPQDAFRIRQFQKARAGSTSQ---TGSVSYGSALSGDLSGST 757
SQPLP D FR+RQ +KAR +TS TGS SYGSA SG+LSGST
Sbjct: 689 SQPLPTDVFRLRQMRKARGIATSSQTPTGSTSYGSAFSGELSGST 733
>pir||F86312 hypothetical protein F11A6.10 [imported] - Arabidopsis thaliana
gi|9802749|gb|AAF99818.1| Similar to cleavage
stimulation factor subunit [Arabidopsis thaliana]
Length = 793
Score = 840 bits (2171), Expect = 0.0
Identities = 457/769 (59%), Positives = 548/769 (70%), Gaps = 102/769 (13%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
IA+ATPIYEQLL LYPT+A+FWKQYVEA MAVNNDDA KQIFSRCLL CLQVPLW+CYIR
Sbjct: 92 IAQATPIYEQLLSLYPTSARFWKQYVEAQMAVNNDDATKQIFSRCLLTCLQVPLWQCYIR 151
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLP----AAHPQEE 138
FIRKV DKKGAEGQEET KAFEFML+Y+G+DIASGP+W EYIAFLKSLP A + E+
Sbjct: 152 FIRKVYDKKGAEGQEETTKAFEFMLNYIGTDIASGPIWTEYIAFLKSLPIPMQALNLNED 211
Query: 139 THRMTVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYR 198
HR T +RKVY RAI+TPTHH+EQLWKDY++FE++V+++LAKGL++EYQPK+NSARAVYR
Sbjct: 212 LHRKTALRKVYHRAILTPTHHVEQLWKDYENFENTVNRQLAKGLVNEYQPKFNSARAVYR 271
Query: 199 ERKKFFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLF 258
ERKK+ +EIDW ++L+V PP
Sbjct: 272 ERKKYIEEIDW------------------------NMLAV------------PP------ 289
Query: 259 LLTGRNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGS 318
TG + +D + +D + CLM LYHYPDVWYDYA WH K+GS
Sbjct: 290 --TGTSKLDFNISQQLIGPLVDFFDFFGLRLM----CLMCLYHYPDVWYDYAEWHVKSGS 343
Query: 319 IDAAIKVFQRSLKALPDSEMLRYAYAELEESRGAIQAAKKIYENLLGDSENATALAHIQF 378
DAAIKVFQR+LKA+P ++R A S +Q+AKK+YEN+LG S N+ LAHIQ+
Sbjct: 344 TDAAIKVFQRALKAIPALLVVRILVAY---SCMILQSAKKLYENILGASTNS--LAHIQY 398
Query: 379 IRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAHNVFEAGLKHFM 438
+RFLRR EGVE ARKYFLDARKSPSCTYHVY+A+A++AFC+DK+PK+AHN+FE GLK +M
Sbjct: 399 LRFLRRAEGVEAARKYFLDARKSPSCTYHVYIAFATMAFCIDKEPKVAHNIFEEGLKLYM 458
Query: 439 HEPVYILEYADFLIRLNDDQNIRALFERALSSLPLEDSVEVWKRFVKFEQTYGDLASMLK 498
EPVYIL+YADFL RLNDD+NIRALFERALS+LP+EDS EVWKRF++FEQTYGDLAS+LK
Sbjct: 459 SEPVYILKYADFLTRLNDDRNIRALFERALSTLPVEDSAEVWKRFIQFEQTYGDLASILK 518
Query: 499 VEQRRKEAF---GEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQEWLVKNTKKV 555
VEQR KEA GEE ++ ESSLQDVVSRYS+MDLWPC+SNDLD+L+RQE LVKN K
Sbjct: 519 VEQRMKEALSGKGEEGSSPPESSLQDVVSRYSYMDLWPCTSNDLDHLARQELLVKNLNKK 578
Query: 556 EKSIMLNGTTFIDKGPVASIS-TTSSKVVYPDTSKMLIYDP--------KHNPGTGAA-- 604
G T + P A S +SSKVVYPDTS+M++ DP NP +A
Sbjct: 579 A------GKTNLPHVPAAIGSVASSSKVVYPDTSQMVVQDPTKKSEFASSANPVAASASN 632
Query: 605 -------------GTNAFDEILKATPPALVAFLANLPSVDGPTPNVDIVLSICLQSDLPT 651
+ FDEI K TPPALVAFLANLP VDGPTPNVD+VLSICLQSD PT
Sbjct: 633 TFPSTVTATATHGSASTFDEIPKTTPPALVAFLANLPIVDGPTPNVDVVLSICLQSDFPT 692
Query: 652 GQSVKVGIPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDT 711
GQ+VK ++ G P+ ++ SG ++ G+S P ++ KRK D QEEDDT
Sbjct: 693 GQTVKQSFAAK---GNPPSQNDPSGPTR------GVSQRLPRDRRATKRKDSDRQEEDDT 743
Query: 712 KSVQSQPLPQDAFRIRQFQKARAGSTSQ---TGSVSYGSALSGDLSGST 757
+VQSQPLP D FR+RQ +KAR +TS TGS SYGSA SG+LSGST
Sbjct: 744 ATVQSQPLPTDVFRLRQMRKARGIATSSQTPTGSTSYGSAFSGELSGST 792
>gb|AAH77522.1| Cstf3-prov protein [Xenopus laevis]
Length = 718
Score = 365 bits (936), Expect = 4e-99
Identities = 237/735 (32%), Positives = 369/735 (49%), Gaps = 88/735 (11%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I +A YE+L+ +P++ +FWK Y+EA + N D ++++F RCL+ L + LW+CY+
Sbjct: 48 IDKARKTYERLVAQFPSSGRFWKLYIEAEVKAKNYDKVEKLFQRCLMKVLHIDLWKCYVS 107
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRM 142
++R+ K + +E+ +A++F L +G +I S +W++YI FLK + A E R+
Sbjct: 108 YVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 166
Query: 143 TVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
T VR+VYQR + P +IEQLW+DY+ +E ++ LAK +I + Y +AR V +E +
Sbjct: 167 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINVHLAKKMIEDRSRDYMNARRVAKEYET 226
Query: 203 FFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTG 262
+D N +VPP + + ++ + + K ++ W +
Sbjct: 227 VMKGLDRNAPSVPPQNTPQEAQQVEMWKKYIQ----------WEKS-------------- 262
Query: 263 RNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSI--- 319
N + ++T I KRV+F YEQCL+ L H+PD+WY+ A + ++ +
Sbjct: 263 -NPLRTEDQTLI----------TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 311
Query: 320 -----------DAAIKVFQRSLKALPDSEMLRY-AYAELEESRGAIQAAKKIYENLLGDS 367
D A +++R++ L ML Y AYA+ EESR + IY LL
Sbjct: 312 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKTHSIYNRLLSIE 371
Query: 368 ENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAH 427
+ L +IQ+++F RR EG++ R F AR+ P +HVYV A + + KD +A
Sbjct: 372 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDPRTRHHVYVTAALMEYYCSKDTSVAF 431
Query: 428 NVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALS--SLPLEDSVEVWKRFVK 485
+FE GLK + P Y+L Y D+L LN+D N R LFER L+ SLP E S E+W RF+
Sbjct: 432 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 491
Query: 486 FEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQ 545
FE GDLAS+LKVE+RR AF EE E++L +V RY FMDL+PCS+++L L
Sbjct: 492 FESNIGDLASILKVEKRRYTAFKEE-YEGKETAL--LVDRYKFMDLYPCSTSELKALG-- 546
Query: 546 EWLVKNTKKVEKSIMLNGTTFIDKGPVASISTTSSKVVY--PDTSKMLIYDPKH--NPGT 601
K+ + + + ++ + K Y PDTS+M+ + P+H PG
Sbjct: 547 ---YKDVSRAKLTALIPDPVVAPSIAPSQKDDADRKPEYPKPDTSQMIPFQPRHLAPPGL 603
Query: 602 GAAGTNAFDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSICLQSDLPTGQSVKVG 658
F PPA V + LP GP VD +L I + LP
Sbjct: 604 HPVPGGVF-----PVPPAAVVLMKLLPPPICFQGPFVQVDEILEILRRCKLPDTVEEAAR 658
Query: 659 IPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQP 718
I + A SE +G + + + + + KR DS +E++ SV P
Sbjct: 659 I---ITGSQAEMNSEGNGPVEVNAILN----------KSVKRPNEDSDDEEEKGSV--VP 703
Query: 719 LPQDAFRIRQFQKAR 733
D +R RQ ++ R
Sbjct: 704 PVHDIYRTRQQKRIR 718
>gb|AAH63376.1| Hypothetical protein MGC76035 [Xenopus tropicalis]
gi|45361053|ref|NP_989162.1| hypothetical protein
MGC76035 [Xenopus tropicalis]
Length = 718
Score = 360 bits (925), Expect = 7e-98
Identities = 237/737 (32%), Positives = 372/737 (50%), Gaps = 92/737 (12%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I +A YE+L+ +P++ +FWK Y+EA + N D ++++F RCL+ L + LW+CY+
Sbjct: 48 IDKARKTYERLVAQFPSSGRFWKLYIEAEVKAKNYDKVEKLFQRCLMKVLHIDLWKCYVS 107
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRM 142
++R+ K + +E+ +A++F L +G +I S +W++YI FLK + A E R+
Sbjct: 108 YVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 166
Query: 143 TVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
T VR+VYQR + P +IEQLW+DY+ +E ++ LAK +I + Y +AR V +E +
Sbjct: 167 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET 226
Query: 203 FFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTG 262
+D N +VPP + + ++ + + K ++ W +
Sbjct: 227 VMKGLDRNAPSVPPQNTPQEAQQVEMWKKYIQ----------WEKS-------------- 262
Query: 263 RNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSI--- 319
N + ++T I KRV+F YEQCL+ L H+PD+WY+ + ++ +
Sbjct: 263 -NPLRTEDQTLI----------TKRVMFAYEQCLLVLGHHPDIWYEAGQYLEQSSKLLAE 311
Query: 320 -----------DAAIKVFQRSLKALPDSEMLRY-AYAELEESRGAIQAAKKIYENLLGDS 367
D A +++R++ L ML Y AYA+ EESR + IY LL
Sbjct: 312 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKTHSIYNRLLAIE 371
Query: 368 ENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAH 427
+ L +IQ+++F RR EG++ R F AR+ P +HVYV A + + KD +A
Sbjct: 372 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDPRTRHHVYVTAALMEYYCSKDTSVAF 431
Query: 428 NVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALS--SLPLEDSVEVWKRFVK 485
+FE GLK + P Y+L Y D+L LN+D N R LFER L+ SLP E S E+W RF+
Sbjct: 432 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 491
Query: 486 FEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQ 545
FE GDLAS+LKVE+RR AF EE E++L +V RY FMDL+PCS+++L L
Sbjct: 492 FESNIGDLASILKVEKRRYTAFKEE-YEGKETAL--LVDRYKFMDLYPCSTSELKALG-- 546
Query: 546 EWLVKNTKKVEKSIMLNGTTFIDKGPVASISTTSSKVVY--PDTSKMLIYDPKH--NPGT 601
K+ + + + ++ + K Y PDTS+M+ + P+H PG
Sbjct: 547 ---YKDVSRAKLAALIPDPVIAPSIAPSLKDDVDRKPEYPKPDTSQMIPFQPRHLAPPGL 603
Query: 602 GAAGTNAFDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSICLQSDLP--TGQSVK 656
F PPA V + LP GP VD ++ I + LP ++V+
Sbjct: 604 HPVPGGVF-----PVPPAAVILMKLLPPPICFQGPFVQVDEIMEILRRCKLPDTVEEAVR 658
Query: 657 VGIPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQS 716
+ SQ A + G+ PV+ + + KR DS +E++ SV
Sbjct: 659 IITGSQ-------AEMNMEGNG---PVE-----VNTLLNKSVKRPNEDSDDEEEKGSV-- 701
Query: 717 QPLPQDAFRIRQFQKAR 733
P D +R RQ ++ R
Sbjct: 702 VPPVHDIYRTRQQKRIR 718
>ref|XP_508355.1| PREDICTED: similar to cleavage stimulation factor subunit 3 [Pan
troglodytes]
Length = 844
Score = 356 bits (913), Expect = 2e-96
Identities = 234/735 (31%), Positives = 367/735 (49%), Gaps = 88/735 (11%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I +A YE+L+ +P++ +FWK Y+EA + N D ++++F RCL+ L + LW+CY+
Sbjct: 174 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 233
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRM 142
++R+ K + +E+ +A++F L +G +I S +W++YI FLK + A E R+
Sbjct: 234 YVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 292
Query: 143 TVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
T VR+VYQR + P +IEQLW+DY+ +E ++ LAK +I + Y +AR V +E +
Sbjct: 293 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET 352
Query: 203 FFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTG 262
+D N +VPP + + ++ + + K ++ W +
Sbjct: 353 VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ----------WEKS-------------- 388
Query: 263 RNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSI--- 319
N + ++T I KRV+F YEQCL+ L H+PD+WY+ A + ++ +
Sbjct: 389 -NPLRTEDQTLI----------TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 437
Query: 320 -----------DAAIKVFQRSLKALPDSEMLRY-AYAELEESRGAIQAAKKIYENLLGDS 367
D A +++R++ L ML Y AYA+ EESR + IY LL
Sbjct: 438 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 497
Query: 368 ENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAH 427
+ L +IQ+++F RR EG++ R F AR+ +HVYV A + + KD +A
Sbjct: 498 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAF 557
Query: 428 NVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALS--SLPLEDSVEVWKRFVK 485
+FE GLK + P Y+L Y D+L LN+D N R LFER L+ SLP E S E+W RF+
Sbjct: 558 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 617
Query: 486 FEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQ 545
FE GDLAS+LKVE+RR AF EE E++L +V RY FMDL+PCS+++L L
Sbjct: 618 FESNIGDLASILKVEKRRFTAFKEE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-- 672
Query: 546 EWLVKNTKKVEKSIMLNGTTFIDKGPVASISTTSSKVVY--PDTSKMLIYDPKH--NPGT 601
K+ + + + ++ K Y PDT +M+ + P+H PG
Sbjct: 673 ---YKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 729
Query: 602 GAAGTNAFDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSICLQSDLPTGQSVKVG 658
F PPA V + LP GP VD ++ I + +P V
Sbjct: 730 HPVPGGVF-----PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVR 784
Query: 659 IPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQP 718
I + G E +G +S+ V + + KR DS E+++ +V P
Sbjct: 785 I---ITGGAPELAVEGNGPVESNAVLT----------KAVKRPNEDSDEDEEKGAV--VP 829
Query: 719 LPQDAFRIRQFQKAR 733
D +R RQ ++ R
Sbjct: 830 PVHDIYRARQQKRIR 844
>gb|AAH45871.1| Cleavage stimulation factor, 3' pre-RNA, subunit 3 [Danio rerio]
gi|47085767|ref|NP_998218.1| cleavage stimulation
factor, 3' pre-RNA, subunit 3 [Danio rerio]
Length = 716
Score = 356 bits (913), Expect = 2e-96
Identities = 236/735 (32%), Positives = 367/735 (49%), Gaps = 89/735 (12%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I +A YE+L+ +P++ +FWK Y+EA + N D ++++F RCL+ L + LW+CY+
Sbjct: 47 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 106
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRM 142
++R+ K + +E+ +A++F L +G +I S +W++YI FLK + A E R+
Sbjct: 107 YVRETKGKLPSY-KEKMPQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 165
Query: 143 TVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
T VR+VYQR + P +IEQLW+DY +E ++ LAK +I + Y +AR V +E +
Sbjct: 166 TAVRRVYQRGCVNPMINIEQLWRDYSKYEEGINVHLAKKMIEDRSRDYMNARRVAKEYET 225
Query: 203 FFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTG 262
+D N +VPP S + ++ + + K ++ W +
Sbjct: 226 VMKGLDRNAPSVPPQNSPQEAQQVEMWKKYIQ----------WEKS-------------- 261
Query: 263 RNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSI--- 319
N + ++T I KRV+F YEQCL+ L H+PD+WY+ A + ++ +
Sbjct: 262 -NPLRTEDQTLI----------TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 310
Query: 320 -----------DAAIKVFQRSLKALPDSEMLRY-AYAELEESRGAIQAAKKIYENLLGDS 367
D A +++R++ L ML Y ++A+ EESR + IY LL
Sbjct: 311 KGDMNNAKLFSDEAANIYERAIGTLLKKNMLLYFSFADYEESRMKHEKVHSIYNRLLAIE 370
Query: 368 ENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAH 427
+ L +IQ+++F RR EG++ R F AR+ P +HVYV A + + KD +A
Sbjct: 371 DIDPTLVYIQYMKFARRAEGIKSGRSIFKKAREDPRTRHHVYVTAALMEYYCSKDKSVAF 430
Query: 428 NVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALS--SLPLEDSVEVWKRFVK 485
+FE GLK + P YIL Y D+L LN+D N R LFER L+ SL E S E+W RF+
Sbjct: 431 KIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPEKSGEIWARFLA 490
Query: 486 FEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQ 545
FE GDLAS+LKVE+RR AF +E E++L +V RY FMDL+PCS ++L L
Sbjct: 491 FESNIGDLASILKVERRRFMAFKDE-YEGKETAL--LVDRYKFMDLYPCSPSELKALG-- 545
Query: 546 EWLVKNTKKVEKSIMLNGTTFIDKGPVASISTTSSKVVY--PDTSKMLIYDPKH--NPGT 601
K+ + + + ++ P A K Y PDT +M+ + P+H PG
Sbjct: 546 ---YKDVSRAKYASLIPEAVVAPSTP-ALKDEADRKPEYPKPDTCQMIPFQPRHLAPPGL 601
Query: 602 GAAGTNAFDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSICLQSDLPTGQSVKVG 658
F PPA V + LP GP VD ++ + LP V
Sbjct: 602 HPVPGGVF-----PVPPAAVVLMKLLPPPSCFTGPFVQVDEMMEALRRCVLPDTVDAAVE 656
Query: 659 IPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQP 718
+ + +SE +G ++H V + + KR DS EE+D S+ P
Sbjct: 657 L---ITGKQLEMSSEGNGPVENHSVAN----------KSLKRPNADSDEEEDKGSI--AP 701
Query: 719 LPQDAFRIRQFQKAR 733
D +R RQ ++ R
Sbjct: 702 PIHDIYRARQQKRIR 716
>emb|CAC48252.1| dJ85M6.1 (cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kD)
[Homo sapiens]
Length = 708
Score = 356 bits (913), Expect = 2e-96
Identities = 234/735 (31%), Positives = 367/735 (49%), Gaps = 88/735 (11%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I +A YE+L+ +P++ +FWK Y+EA + N D ++++F RCL+ L + LW+CY+
Sbjct: 38 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 97
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRM 142
++R+ K + +E+ +A++F L +G +I S +W++YI FLK + A E R+
Sbjct: 98 YVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 156
Query: 143 TVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
T VR+VYQR + P +IEQLW+DY+ +E ++ LAK +I + Y +AR V +E +
Sbjct: 157 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET 216
Query: 203 FFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTG 262
+D N +VPP + + ++ + + K ++ W +
Sbjct: 217 VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ----------WEKS-------------- 252
Query: 263 RNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSI--- 319
N + ++T I KRV+F YEQCL+ L H+PD+WY+ A + ++ +
Sbjct: 253 -NPLRTEDQTLI----------TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 301
Query: 320 -----------DAAIKVFQRSLKALPDSEMLRY-AYAELEESRGAIQAAKKIYENLLGDS 367
D A +++R++ L ML Y AYA+ EESR + IY LL
Sbjct: 302 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 361
Query: 368 ENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAH 427
+ L +IQ+++F RR EG++ R F AR+ +HVYV A + + KD +A
Sbjct: 362 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAF 421
Query: 428 NVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALS--SLPLEDSVEVWKRFVK 485
+FE GLK + P Y+L Y D+L LN+D N R LFER L+ SLP E S E+W RF+
Sbjct: 422 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 481
Query: 486 FEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQ 545
FE GDLAS+LKVE+RR AF EE E++L +V RY FMDL+PCS+++L L
Sbjct: 482 FESNIGDLASILKVEKRRFTAFKEE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-- 536
Query: 546 EWLVKNTKKVEKSIMLNGTTFIDKGPVASISTTSSKVVY--PDTSKMLIYDPKH--NPGT 601
K+ + + + ++ K Y PDT +M+ + P+H PG
Sbjct: 537 ---YKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 593
Query: 602 GAAGTNAFDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSICLQSDLPTGQSVKVG 658
F PPA V + LP GP VD ++ I + +P V
Sbjct: 594 HPVPGGVF-----PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVR 648
Query: 659 IPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQP 718
I + G E +G +S+ V + + KR DS E+++ +V P
Sbjct: 649 I---ITGGAPELAVEGNGPVESNAVLT----------KAVKRPNEDSDEDEEKGAV--VP 693
Query: 719 LPQDAFRIRQFQKAR 733
D +R RQ ++ R
Sbjct: 694 PVHDIYRARQQKRIR 708
>emb|CAH90038.1| hypothetical protein [Pongo pygmaeus]
Length = 717
Score = 356 bits (913), Expect = 2e-96
Identities = 234/735 (31%), Positives = 367/735 (49%), Gaps = 88/735 (11%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I +A YE+L+ +P++ +FWK Y+EA + N D ++++F RCL+ L + LW+CY+
Sbjct: 47 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 106
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRM 142
++R+ K + +E+ +A++F L +G +I S +W++YI FLK + A E R+
Sbjct: 107 YVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 165
Query: 143 TVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
T VR+VYQR + P +IEQLW+DY+ +E ++ LAK +I + Y +AR V +E +
Sbjct: 166 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET 225
Query: 203 FFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTG 262
+D N +VPP + + ++ + + K ++ W +
Sbjct: 226 VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ----------WEKS-------------- 261
Query: 263 RNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSI--- 319
N + ++T I KRV+F YEQCL+ L H+PD+WY+ A + ++ +
Sbjct: 262 -NPLRTEDQTLI----------TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 310
Query: 320 -----------DAAIKVFQRSLKALPDSEMLRY-AYAELEESRGAIQAAKKIYENLLGDS 367
D A +++R++ L ML Y AYA+ EESR + IY LL
Sbjct: 311 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 370
Query: 368 ENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAH 427
+ L +IQ+++F RR EG++ R F AR+ +HVYV A + + KD +A
Sbjct: 371 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAF 430
Query: 428 NVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALS--SLPLEDSVEVWKRFVK 485
+FE GLK + P Y+L Y D+L LN+D N R LFER L+ SLP E S E+W RF+
Sbjct: 431 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 490
Query: 486 FEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQ 545
FE GDLAS+LKVE+RR AF EE E++L +V RY FMDL+PCS+++L L
Sbjct: 491 FESNIGDLASILKVEKRRFTAFKEE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-- 545
Query: 546 EWLVKNTKKVEKSIMLNGTTFIDKGPVASISTTSSKVVY--PDTSKMLIYDPKH--NPGT 601
K+ + + + ++ K Y PDT +M+ + P+H PG
Sbjct: 546 ---YKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 602
Query: 602 GAAGTNAFDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSICLQSDLPTGQSVKVG 658
F PPA V + LP GP VD ++ I + +P V
Sbjct: 603 HPVPGGVF-----PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVR 657
Query: 659 IPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQP 718
I + G E +G +S+ V + + KR DS E+++ +V P
Sbjct: 658 I---ITGGAPELAVEGNGPVESNAVLT----------KAVKRPNEDSDEDEEKGAV--VP 702
Query: 719 LPQDAFRIRQFQKAR 733
D +R RQ ++ R
Sbjct: 703 PVHDIYRARQQKRIR 717
>ref|NP_001317.1| cleavage stimulation factor subunit 3 [Homo sapiens]
gi|1082704|pir||S50852 cleavage stimulation factor 77K
chain - human gi|632498|gb|AAA61417.1| cleavage
stimulation factor 77kDa subunit
gi|1092656|prf||2024339A cleavage stimulation factor
Length = 717
Score = 356 bits (913), Expect = 2e-96
Identities = 234/735 (31%), Positives = 367/735 (49%), Gaps = 88/735 (11%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I +A YE+L+ +P++ +FWK Y+EA + N D ++++F RCL+ L + LW+CY+
Sbjct: 47 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 106
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRM 142
++R+ K + +E+ +A++F L +G +I S +W++YI FLK + A E R+
Sbjct: 107 YVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 165
Query: 143 TVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
T VR+VYQR + P +IEQLW+DY+ +E ++ LAK +I + Y +AR V +E +
Sbjct: 166 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET 225
Query: 203 FFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTG 262
+D N +VPP + + ++ + + K ++ W +
Sbjct: 226 VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ----------WEKS-------------- 261
Query: 263 RNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSI--- 319
N + ++T I KRV+F YEQCL+ L H+PD+WY+ A + ++ +
Sbjct: 262 -NPLRTEDQTLI----------TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 310
Query: 320 -----------DAAIKVFQRSLKALPDSEMLRY-AYAELEESRGAIQAAKKIYENLLGDS 367
D A +++R++ L ML Y AYA+ EESR + IY LL
Sbjct: 311 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 370
Query: 368 ENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAH 427
+ L +IQ+++F RR EG++ R F AR+ +HVYV A + + KD +A
Sbjct: 371 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAF 430
Query: 428 NVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALS--SLPLEDSVEVWKRFVK 485
+FE GLK + P Y+L Y D+L LN+D N R LFER L+ SLP E S E+W RF+
Sbjct: 431 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 490
Query: 486 FEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQ 545
FE GDLAS+LKVE+RR AF EE E++L +V RY FMDL+PCS+++L L
Sbjct: 491 FESNIGDLASILKVEKRRFTAFKEE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-- 545
Query: 546 EWLVKNTKKVEKSIMLNGTTFIDKGPVASISTTSSKVVY--PDTSKMLIYDPKH--NPGT 601
K+ + + + ++ K Y PDT +M+ + P+H PG
Sbjct: 546 ---YKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 602
Query: 602 GAAGTNAFDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSICLQSDLPTGQSVKVG 658
F PPA V + LP GP VD ++ I + +P V
Sbjct: 603 HPVPGGVF-----PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVR 657
Query: 659 IPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQP 718
I + G E +G +S+ V + + KR DS E+++ +V P
Sbjct: 658 I---ITGGAPELAVEGNGPVESNAVLT----------KAVKRPNEDSDEDEEKGAV--VP 702
Query: 719 LPQDAFRIRQFQKAR 733
D +R RQ ++ R
Sbjct: 703 PVHDIYRARQQKRIR 717
>ref|NP_663504.1| cleavage stimulation factor, 3' pre-RNA, subunit 3 [Mus musculus]
gi|13096880|gb|AAH03241.1| Cleavage stimulation factor,
3' pre-RNA, subunit 3 [Mus musculus]
Length = 717
Score = 355 bits (911), Expect = 3e-96
Identities = 234/735 (31%), Positives = 366/735 (48%), Gaps = 88/735 (11%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I +A YE+L+ +P++ +FWK Y+EA + N D ++++F RCL+ L + LW+CY+
Sbjct: 47 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 106
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRM 142
++R+ K + +E+ +A++F L +G +I S +W++YI FLK + A E R+
Sbjct: 107 YVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 165
Query: 143 TVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
T VR+VYQR + P +IEQLW+DY+ +E ++ LAK +I + Y +AR V +E +
Sbjct: 166 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET 225
Query: 203 FFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTG 262
+D N +VPP + + ++ + + K ++ W +
Sbjct: 226 VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ----------WEKS-------------- 261
Query: 263 RNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSI--- 319
N + ++T I KRV+F YEQCL+ L H+PD+WY+ A + ++ +
Sbjct: 262 -NPLRTEDQTLI----------TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 310
Query: 320 -----------DAAIKVFQRSLKALPDSEMLRY-AYAELEESRGAIQAAKKIYENLLGDS 367
D A +++R++ L ML Y AYA+ EESR + IY LL
Sbjct: 311 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 370
Query: 368 ENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAH 427
+ L +IQ+++F RR EG++ R F AR+ +HVYV A + + KD +A
Sbjct: 371 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 430
Query: 428 NVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALS--SLPLEDSVEVWKRFVK 485
+FE GLK + P Y+L Y D+L LN+D N R LFER L+ SLP E S E+W RF+
Sbjct: 431 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 490
Query: 486 FEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQ 545
FE GDLAS+LKVE+RR AF EE E++L +V RY FMDL+PCS+++L L
Sbjct: 491 FESNIGDLASILKVEKRRFTAFREE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-- 545
Query: 546 EWLVKNTKKVEKSIMLNGTTFIDKGPVASISTTSSKVVY--PDTSKMLIYDPKH--NPGT 601
K+ + + + ++ K Y PDT +M+ + P+H PG
Sbjct: 546 ---YKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 602
Query: 602 GAAGTNAFDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSICLQSDLPTGQSVKVG 658
F PPA V + LP GP VD ++ I + +P V
Sbjct: 603 HPVPGGVF-----PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVR 657
Query: 659 IPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQP 718
I + G E +G +S V + + KR DS E+++ +V P
Sbjct: 658 I---ITGGAPELAVEGNGPVESSAVLT----------KAVKRPNEDSDEDEEKGAV--VP 702
Query: 719 LPQDAFRIRQFQKAR 733
D +R RQ ++ R
Sbjct: 703 PVHDIYRARQQKRIR 717
>ref|XP_637594.1| hypothetical protein DDB0187069 [Dictyostelium discoideum]
gi|60466011|gb|EAL64078.1| hypothetical protein
DDB0187069 [Dictyostelium discoideum]
Length = 1065
Score = 354 bits (909), Expect = 5e-96
Identities = 194/523 (37%), Positives = 295/523 (56%), Gaps = 43/523 (8%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I+ A IY++ L ++PTA ++WK YVE M N D +++IF L + V W+ YI
Sbjct: 194 ISIARDIYKRFLSVFPTAGRYWKLYVEEEMKEKNYDIVEKIFFENLRSVKNVEFWKSYIA 253
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRM 142
+I+++ K E +EE KAFEF L +G DI+S +W +YI FLK A+ EE +M
Sbjct: 254 YIKQIKGDK-VENREEIIKAFEFALESIGMDISSTSIWTDYIQFLKDEKASTQFEEGQKM 312
Query: 143 TVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
T +RK+YQRAI P H ++ ++K+Y+ +E+S+++ LAK L+S++Q KY AR VYR+RK
Sbjct: 313 TAIRKLYQRAIENPMHDLDNIYKEYEVYENSINKTLAKALLSDHQGKYQHARNVYRDRKS 372
Query: 203 FFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTG 262
+ I NMLA PP S K + L + KL + P K
Sbjct: 373 LLEGILRNMLAKPPRSSDKEEHQVRLWR-----------KLITYERSNPQK--------- 412
Query: 263 RNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSIDAA 322
D + RVI TY QCL+ LYHYPD+WY+ AT+ A G
Sbjct: 413 ----------------FDAVTLRNRVIATYNQCLLCLYHYPDIWYEAATYLADCGDSSGC 456
Query: 323 IKVFQRSLKALPDSEMLRYAYAELEESRGAIQAAKKIYENLLGDSENATALAHIQFIRFL 382
I +F RSL ALP + + +AYA+ ES+ AK+IYE +L N L IQ+++F
Sbjct: 457 IAMFDRSLIALPKNLFIHFAYADYLESQKKQPQAKEIYEKIL--QANPEPLVWIQYMKFS 514
Query: 383 RRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAHNVFEAGLKHFMHEPV 442
RRTE +E RK F A+ +P CTYHVY+A + + +++D +MA ++FE GLK F E
Sbjct: 515 RRTERIEGPRKIFKRAKSTPDCTYHVYIALGLIEYYINQDTRMARDIFEIGLKKFPSEIA 574
Query: 443 YILEYADFLIRLNDDQNIRALFERALSSLPLEDSVEVWKRFVKFEQTYG-DLASMLKVEQ 501
++ Y +FL LN++ N R LFE+ L+ LE S +W++F+ FE D++S+LK+E+
Sbjct: 575 FVNFYIEFLTNLNEENNTRVLFEKLLTWPSLEKSESIWRKFLDFEYRQNQDVSSILKLEK 634
Query: 502 RRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSR 544
R + +S + ++RY F++LW C +++ +++
Sbjct: 635 RYQVTVNSN---TDKSGVLQALNRYKFLNLWSCHPTEIEIITK 674
>emb|CAH65034.1| hypothetical protein [Gallus gallus]
gi|60302784|ref|NP_001012586.1| cleavage stimulation
factor subunit 3 [Gallus gallus]
Length = 718
Score = 354 bits (908), Expect = 7e-96
Identities = 233/740 (31%), Positives = 366/740 (48%), Gaps = 98/740 (13%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I +A YE+L+ +P++ +FWK Y+EA + N D ++++F RCL+ L + LW+CY+
Sbjct: 48 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 107
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRM 142
++R+ K + +E+ +A++F L +G +I S +W++YI FLK + A E R+
Sbjct: 108 YVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 166
Query: 143 TVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
T VR+VYQR + P +IEQLW+DY+ +E ++ LAK +I + Y +AR V +E +
Sbjct: 167 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET 226
Query: 203 FFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTG 262
+D N +VPP + + ++ + + K ++ W +
Sbjct: 227 VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ----------WEKS-------------- 262
Query: 263 RNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSI--- 319
N + ++T I KRV+F YEQCL+ L H+PD+WY+ A + ++ +
Sbjct: 263 -NPLRTEDQTLI----------TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 311
Query: 320 -----------DAAIKVFQRSLKALPDSEMLRY-AYAELEESRGAIQAAKKIYENLLGDS 367
D A +++R++ L ML Y AYA+ EESR + IY LL
Sbjct: 312 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 371
Query: 368 ENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAH 427
+ L +IQ+++F RR EG++ R F AR+ +HVYV A + + KD +A
Sbjct: 372 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAF 431
Query: 428 NVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALS--SLPLEDSVEVWKRFVK 485
+FE GLK + P Y+L Y D+L LN+D N R LFER L+ SLP E S E+W RF+
Sbjct: 432 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 491
Query: 486 FEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQ 545
FE GDLAS+LKVE+RR AF EE E++L +V RY FMDL+PCS+++L L
Sbjct: 492 FESNIGDLASILKVEKRRFTAFKEE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-- 546
Query: 546 EWLVKNTKKVEKSIMLNGTTFIDKGPVASISTTSSKVVY--PDTSKMLIYDPKH--NPGT 601
K+ + + + ++ K Y PDT +M+ + P+H PG
Sbjct: 547 ---YKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 603
Query: 602 GAAGTNAFDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSICLQSDLP--TGQSVK 656
F PPA V + LP GP VD ++ I + LP ++V+
Sbjct: 604 HPVPGGVF-----PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKLPDTVDEAVR 658
Query: 657 V---GIPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKS 713
+ G+P G P + + KR DS ++++ S
Sbjct: 659 IITGGLPEIAVEGNGPVENNAM------------------LNKAVKRSNEDSDDDEEKGS 700
Query: 714 VQSQPLPQDAFRIRQFQKAR 733
V P D +R RQ ++ R
Sbjct: 701 V--VPPVHDIYRARQQKRIR 718
>gb|AAX33532.1| LD38348p [Drosophila melanogaster] gi|422428|pir||A46389 gene su(f)
protein, 84K splice form - fruit fly (Drosophila
melanogaster) gi|8670|emb|CAA44551.1| 84 kD protein
[Drosophila melanogaster] gi|135031|sp|P25991|SUF_DROME
Suppressor of forked protein
Length = 733
Score = 333 bits (855), Expect = 9e-90
Identities = 221/733 (30%), Positives = 363/733 (49%), Gaps = 76/733 (10%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I E +YE L+ ++PT A++WK Y+E M + ++++F RCL+ L + LW+ Y+
Sbjct: 48 IHEVRSLYESLVNVFPTTARYWKLYIEMEMRSRYYERVEKLFQRCLVKILNIDLWKLYLT 107
Query: 83 FIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRM 142
++++ +E+ +A++F L +G D+ S +W +YI FL+ + A E ++
Sbjct: 108 YVKETKSGLSTH-KEKMAQAYDFALEKIGMDLHSFSIWQDYIYFLRGVEAVGNYAENQKI 166
Query: 143 TVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
T VR+VYQ+A++TP IEQLWKDY +FE +++ +++ + E Y +AR V +E +
Sbjct: 167 TAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINPIISEKMSLERSKDYMNARRVAKELEY 226
Query: 203 FFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTG 262
++ N+ AVPPT + + K + L K +++
Sbjct: 227 HTKGLNRNLPAVPPTLTKEEVKQVELWKRFITY--------------------------- 259
Query: 263 RNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWH-------AK 315
E S + D A +RV+F EQCL+ L H+P VW+ + + +
Sbjct: 260 --------EKSNPLRTEDTALVTRRVMFATEQCLLVLTHHPAVWHQASQFLDTSARVLTE 311
Query: 316 AGSIDAA-------IKVFQRSLKA-LPDSEMLRYAYAELEESRGAIQAAKKIYENLLGDS 367
G + AA + +RS+ L + +L +AYA+ EE R + +Y LL
Sbjct: 312 KGDVQAAKIFADECANILERSINGVLNRNALLYFAYADFEEGRLKYEKVHTMYNKLLQLP 371
Query: 368 ENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAH 427
+ L ++Q+++F RR EG++ AR F AR+ YH++VA A + + KD ++A
Sbjct: 372 DIDPTLVYVQYMKFARRAEGIKSARSIFKKAREDVRSRYHIFVAAALMEYYCSKDKEIAF 431
Query: 428 NVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALSS--LPLEDSVEVWKRFVK 485
+FE GLK F P Y++ Y D+L LN+D N R LFER LSS L SVEVW RF++
Sbjct: 432 RIFELGLKRFGGSPEYVMCYIDYLSHLNEDNNTRVLFERVLSSGGLSPHKSVEVWNRFLE 491
Query: 486 FEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQ 545
FE GDL+S++KVE+RR F E +V RY F+DL+PC+S +L ++
Sbjct: 492 FESNIGDLSSIVKVERRRSAVF-ENLKEYEGKETAQLVDRYKFLDLYPCTSTELKSIGYA 550
Query: 546 EWLVKNTKKVEKSIMLNGTTFIDKGPVASISTTSSKVVYPDTSKMLIYDPK--HNPGTGA 603
E + KV G + G V + S + + PD S+M+ + P+ +PG
Sbjct: 551 ENVGIILNKVG-----GGAQSQNTGEVETDSEATPPLPRPDFSQMIPFKPRPCAHPGAHP 605
Query: 604 AGTNAFDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSICLQSDLPTGQSVKVGIP 660
F + PPAL A A LP S GP +V+++ I ++ +LP G
Sbjct: 606 LAGGVFPQ-----PPALAALCATLPPPNSFRGPFVSVELLFDIFMRLNLPDSAPQPNGDN 660
Query: 661 SQLPA--GPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQP 718
P A + + +S VQ ++ + P R R+ L ++ D + + P
Sbjct: 661 ELSPKIFDLAKSVHWIVDTSTYTGVQHSVTAVPPRR-----RRLLPGGDDSDDELQTAVP 715
Query: 719 LPQDAFRIRQFQK 731
D +R+RQ ++
Sbjct: 716 PSHDIYRLRQLKR 728
>emb|CAE57568.1| Hypothetical protein CBG00546 [Caenorhabditis briggsae]
Length = 736
Score = 332 bits (851), Expect = 3e-89
Identities = 233/749 (31%), Positives = 371/749 (49%), Gaps = 89/749 (11%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I + YE L+ +P + ++W+ Y+E + N ++ +F RCL N L + LW+CYI
Sbjct: 35 IDQEREFYESLVTQFPNSGRYWRAYIEHELRSKNFVEVEALFQRCLANVLNIDLWKCYIV 94
Query: 83 FIRKVNDKKGA--EGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETH 140
+ V++ KG + +E K F+F L +G D+ + ++ +YIAFLK +PA E
Sbjct: 95 Y---VSETKGTIEKYRETMAKTFDFALEKIGMDVLAFSIYQDYIAFLKKVPAIGQYAENQ 151
Query: 141 RMTVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRER 200
R+T VR+VYQ+A+ TP H+++ +W DY +FE +++ LA+ LI+E Y ++R V ++
Sbjct: 152 RITAVRRVYQKALATPMHNLDTIWADYCAFEKNINMTLAEKLIAERGKDYQNSRRVEKDL 211
Query: 201 KKFFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLL 260
+ ++ ++VPP G+ SK + L K +++ W
Sbjct: 212 QAMTRGLNRQAVSVPPKGTASESKQVELWKKYIA----------WEKT------------ 249
Query: 261 TGRNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGS-- 318
N + E + +RV++TYEQ L+ L +YPD+WY+ A + +A
Sbjct: 250 ---NPLGTEEYGQLA----------RRVVYTYEQALLSLGYYPDIWYEAAMFLQEASQTL 296
Query: 319 -------IDAAIKV-----FQRSLKAL-PDSEMLRYAYAELEESRGAIQAAKKIYENLLG 365
+ A+KV ++R++ L +S++L +AYA+ +E + A K+IY LL
Sbjct: 297 DEKGDVKLAQALKVECIGLYERAITGLMKESKLLYFAYADFQEEQKKFDAVKEIYNRLLT 356
Query: 366 DSENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKM 425
+ L ++Q +RF+RRTEG AR F AR+ Y V+VA A + + KD +
Sbjct: 357 IEQINPTLTYVQLMRFIRRTEGPNNARLVFKRAREDKRTGYQVFVAAAHMEYNCMKDADV 416
Query: 426 AHNVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALSS--LPLEDSVEVWKRF 483
A VF+ GLK + +EP + L YADFL +N+D N R +FER L+S LP + + +W RF
Sbjct: 417 AIRVFKLGLKKYENEPEFGLAYADFLSNMNEDNNTRVVFERILTSSKLPADKQIRIWDRF 476
Query: 484 VKFEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDL---- 539
+ FE GDLAS+LKVE+RRK A+ E + V+ RY FMDL PCS + L
Sbjct: 477 LDFESCVGDLASILKVEKRRKIAYEEAQKDLGMNHSMLVIDRYKFMDLMPCSGDQLRLIG 536
Query: 540 -DNLSRQEWLVKNTKKVEKSIMLNG---TTFIDKGPVASISTTSSKVVYPDTSKMLIYDP 595
D L + +T K + G + I G PD S+M+ + P
Sbjct: 537 YDALKGNDTPSTSTSSNPKPVPTRGPQAASAIMGGAGGHADVARYGFPRPDISQMIPFKP 596
Query: 596 KHNPGTGAAGTNAFDEILKATPPALVAFLANLPSVD---GPTPNVDIVLSICLQSDLPTG 652
+ N A + + PPA ++ LP GP NV+ + S+ Q+ LP+
Sbjct: 597 RVN---CTASFHPVPGGVYPPPPAAAHLMSLLPPPTCFIGPFVNVEALCSVLSQTQLPSL 653
Query: 653 QSVKVGIPSQLPAGPAPATSEL-----SGSSKSHPVQ-SGLSHMQPGRKQYGKRKQLDSQ 706
Q K P A +L + S S V+ S L+ + KRK+ DS
Sbjct: 654 QYDKSENGMIGPMNEADVKKDLYQLLATTSDPSAVVRSSALADL--------KRKRGDSD 705
Query: 707 EEDDTKSVQSQPL----PQDAFRIRQFQK 731
EED+ +QS + +DA++ R +K
Sbjct: 706 EEDEYSHLQSSTIGSIGSRDAYKRRMNKK 734
>ref|XP_342478.2| PREDICTED: similar to Cleavage stimulation factor, 3 pre-RNA,
subunit 3 [Rattus norvegicus]
Length = 743
Score = 332 bits (850), Expect = 4e-89
Identities = 228/728 (31%), Positives = 355/728 (48%), Gaps = 89/728 (12%)
Query: 31 EQLLQLYPTAAKFWKQYV-EAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIRFIRKVND 89
E+ L+ P W + EA + N D ++++F RCL+ L + LW+CY+ ++R+
Sbjct: 80 EKKLEENPYDLDAWSILIREAQIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKG 139
Query: 90 KKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRMTVVRKVY 149
K + +E+ +A++F L +G +I S +W++YI FLK + A E R+T VR+VY
Sbjct: 140 KLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 198
Query: 150 QRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKKFFDEIDW 209
QR + P +IEQLW+DY+ +E ++ LAK +I + Y +AR V +E + +D
Sbjct: 199 QRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDR 258
Query: 210 NMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLTGRNAVDVM 269
N +VPP + + ++ + + K ++ W + N +
Sbjct: 259 NAPSVPPQNTPQEAQQVDMWKKYIQ----------WEKS---------------NPLRTE 293
Query: 270 EETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWHAKAGSI---------- 319
++T I KRV+F YEQCL+ L H+PD+WY+ A + ++ +
Sbjct: 294 DQTLI----------TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 343
Query: 320 ----DAAIKVFQRSLKALPDSEMLRY-AYAELEESRGAIQAAKKIYENLLGDSENATALA 374
D A +++R++ L ML Y AYA+ EESR + IY LL + L
Sbjct: 344 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV 403
Query: 375 HIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAHNVFEAGL 434
+IQ+++F RR EG++ R F AR+ +HVYV A + + KD +A +FE GL
Sbjct: 404 YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL 463
Query: 435 KHFMHEPVYILEYADFLIRLNDDQNIRALFERALS--SLPLEDSVEVWKRFVKFEQTYGD 492
K + P Y+L Y D+L LN+D N R LFER L+ SLP E S E+W RF+ FE GD
Sbjct: 464 KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 523
Query: 493 LASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQEWLVKNT 552
LAS+LKVE+RR AF EE E++L +V RY FMDL+PCS+++L L K+
Sbjct: 524 LASILKVEKRRFTAFREE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-----YKDV 575
Query: 553 KKVEKSIMLNGTTFIDKGPVASISTTSSKVVY--PDTSKMLIYDPKH--NPGTGAAGTNA 608
+ + + ++ K Y PDT +M+ + P+H PG
Sbjct: 576 SRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVPGGV 635
Query: 609 FDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSICLQSDLPTGQSVKVGIPSQLPA 665
F PPA V + LP GP VD ++ I + +P V I +
Sbjct: 636 F-----PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRI---ITG 687
Query: 666 GPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQPLPQDAFR 725
G E +G +S V + + KR DS E+++ +V P D +R
Sbjct: 688 GAPELAVEGNGPVESSAVLT----------KAVKRPNEDSDEDEEKGAV--VPPVHDIYR 735
Query: 726 IRQFQKAR 733
RQ ++ R
Sbjct: 736 ARQQKRIR 743
>gb|AAC99436.1| suppressor of forked protein; Su(f) protein [Drosophila virilis]
Length = 737
Score = 330 bits (845), Expect = 1e-88
Identities = 221/734 (30%), Positives = 364/734 (49%), Gaps = 74/734 (10%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I E +YE L+ ++PT A++WK Y+E M + ++++F RCL+ L + LW+ Y+
Sbjct: 48 IHEVRSLYESLVNVFPTTARYWKLYIEMEMRSRYYERVEKLFQRCLVKILNIDLWKLYLT 107
Query: 83 FIRKVNDKKG-AEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHR 141
++++ K G + +E+ +A++F L +G D+ S +W +YI FL+ + A E +
Sbjct: 108 YVKET--KAGLSTHKEKMAQAYDFALEKIGMDLHSFSIWQDYIYFLRGVEAVGNYAENQK 165
Query: 142 MTVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERK 201
+T VR+VYQ+A++TP IEQLWKDY +FE +++ +++ + E Y +AR V +E +
Sbjct: 166 ITAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINPIISEKMSLERSKDYMNARRVAKELE 225
Query: 202 KFFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLT 261
++ N+ AVPPT + + +K + L K +++
Sbjct: 226 YHTKGLNRNLPAVPPTLTKEETKQVELWKRFITY-------------------------- 259
Query: 262 GRNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWH-------A 314
E S + D A +RV+F EQCL+ L H+P VW+ + +
Sbjct: 260 ---------EKSNPLRTEDTALVTRRVMFATEQCLLVLTHHPAVWHQASQFLDTSARVLT 310
Query: 315 KAGSIDAA-------IKVFQRSLKA-LPDSEMLRYAYAELEESRGAIQAAKKIYENLLGD 366
+ G + AA + +RS+ L + +L +AYA+ EE R + +Y LL
Sbjct: 311 EKGDVQAAKIFADECANILERSINGVLNRNALLYFAYADFEEGRLKYEKVHSMYNKLLTL 370
Query: 367 SENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMA 426
+ L ++Q+++F RR EG++ AR F AR+ YH++VA A + + KD ++A
Sbjct: 371 PDIDPTLVYVQYMKFARRAEGIKSARGIFKKAREDVRSRYHIFVAAALMEYYCSKDKEIA 430
Query: 427 HNVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALSS--LPLEDSVEVWKRFV 484
+FE GLK F P Y++ Y D+L LN+D N R LFER LSS L SVEVW RF+
Sbjct: 431 FRIFELGLKRFGGSPEYVMCYIDYLSHLNEDNNTRVLFERVLSSGGLSPHKSVEVWNRFL 490
Query: 485 KFEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSR 544
+FE GDL+S++KVE+RR F E +V RY F+DL+PC+S +L ++
Sbjct: 491 EFESNIGDLSSIVKVERRRSAVF-ENLKEYEGKETAQLVDRYKFLDLYPCTSTELKSIGY 549
Query: 545 QEWLVKNTKKVEKSIMLNGTTFIDKGPVASISTTSSKVVYPDTSKMLIYDPKH--NPGTG 602
E + KV + + + + + PD S+M+ + P+ +PG
Sbjct: 550 AENVGIILNKV-GGASGGANSHNNNNENETDGEATQPLPRPDFSQMIPFKPRSCAHPGAH 608
Query: 603 AAGTNAFDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSICLQSDLPTGQSVKVGI 659
F + PPAL A A LP S GP +V+++ I ++ +LP G
Sbjct: 609 PLAGGVFPQ-----PPALAALCAALPPPNSFRGPFVSVELLFDIFMRLNLPESAPQPNGD 663
Query: 660 PSQLPA--GPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQ 717
P A + + +S VQ ++ M P R R+ L ++ D + S
Sbjct: 664 NDLTPKIFDLAKSVHWIVDTSTYTGVQHSVTSMAPRR-----RRLLPGGDDSDDELQTSA 718
Query: 718 PLPQDAFRIRQFQK 731
P D +R+RQ ++
Sbjct: 719 PPTNDIYRLRQLKR 732
>gb|AAR01873.1| suppressor of forked [Drosophila subobscura]
Length = 732
Score = 329 bits (843), Expect = 2e-88
Identities = 223/745 (29%), Positives = 369/745 (48%), Gaps = 101/745 (13%)
Query: 23 IAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIR 82
I E +YE L+ ++PT A++WK Y+E M + ++++F RCL+ L + LW+ Y+
Sbjct: 48 IHEVRSLYESLVSVFPTTARYWKLYIEMEMRSRYYERVEKLFQRCLVKILNIDLWKLYLT 107
Query: 83 FIRKVNDKKG-AEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHR 141
+++ + K G + +E+ +A++F L +G D+ S +W +YI FL+ + A E +
Sbjct: 108 YVK--DTKSGLSTHKEKMAQAYDFALEKIGMDLHSFSIWQDYIYFLRGVEAVGNYAENQK 165
Query: 142 MTVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERK 201
+T VR+VYQ+A++TP IE LWKDY SFE +++ +++ + E Y +AR V +E +
Sbjct: 166 ITAVRRVYQKAVVTPIVGIEHLWKDYISFEQNINPIISEKMSLERSKDYMNARRVAKELE 225
Query: 202 KFFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDNHFPPKSLCLFLLT 261
++ N+ AVPPT + + K + L K +++
Sbjct: 226 YQTKGLNRNLPAVPPTLTKEEVKQVELWKRFITY-------------------------- 259
Query: 262 GRNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYDYATWH-------A 314
E S + D A +RV+F EQCL+ L H+P VW+ + + +
Sbjct: 260 ---------EKSNPLRTEDTALVTRRVMFATEQCLLVLTHHPAVWHQASQFLDTSARVLS 310
Query: 315 KAGSIDAA-------IKVFQRSLKA-LPDSEMLRYAYAELEESRGAIQAAKKIYENLLGD 366
+ G + AA + +RS+ L + +L +AYA+ EE R + +Y L+
Sbjct: 311 EKGDVQAAKIFADECANILERSINGVLNRNALLYFAYADFEEGRLKYEKVHSMYNKLIMH 370
Query: 367 SENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMA 426
+ L ++Q+++F RR EG++ AR F AR+ C YH++VA A + + KD ++A
Sbjct: 371 PDIDPTLVYVQYMQFARRAEGIKSARGIFKKAREDVRCRYHIFVAAALMEYYCSKDKEIA 430
Query: 427 HNVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALSS--LPLEDSVEVWKRFV 484
+FE GLK F P Y++ Y D+L LN+D N R LFER LSS L SVEVW RF+
Sbjct: 431 FRIFELGLKRFGGSPDYVMCYIDYLSHLNEDNNTRVLFERVLSSGGLSPHKSVEVWNRFL 490
Query: 485 KFEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSR 544
+FE GDL+S++KVE+RR F E +V RY F+DL+PC+ +L ++
Sbjct: 491 EFEANIGDLSSIVKVERRRSAVF-ENLKEYEGKETAQLVDRYKFLDLFPCTPTELKSIGY 549
Query: 545 QEWLVKNTKKVEKSIMLN---GTTFIDKGPVASISTTSSKVVYPDTSKMLIYDPK--HNP 599
E I+LN G + G + S ++ + PD +M+ Y P+ +P
Sbjct: 550 AE---------IGGIILNKVGGVQNQNNGDAEADSEATAPLPRPDFRQMIPYKPRPCAHP 600
Query: 600 GTGAAGTNAFDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSICLQSDLPTGQSVK 656
G+ F + PPAL + A LP S GP +V+++ I ++ +LP
Sbjct: 601 GSHPLAGGVFPQ-----PPALASLCAGLPPPNSFRGPFVSVELLFDIFMRLNLPDS---- 651
Query: 657 VGIPSQLPAGPAPATSELSGSSKS----------HPVQSGLSHMQPGRKQYGKRKQLDSQ 706
+ LP G + ++ +KS VQ ++ + P R R+ L
Sbjct: 652 ----APLPNGDNELSLKIFDLAKSVHWIVDTSTYTGVQHSVTAIPPRR-----RRLLPGG 702
Query: 707 EEDDTKSVQSQPLPQDAFRIRQFQK 731
++ D S P D +R+RQ ++
Sbjct: 703 DDSDDDLHPSAPPAHDIYRLRQLKR 727
>dbj|BAE00727.1| unnamed protein product [Macaca fascicularis]
Length = 625
Score = 310 bits (794), Expect = 1e-82
Identities = 215/689 (31%), Positives = 335/689 (48%), Gaps = 88/689 (12%)
Query: 69 LNCLQVPLWRCYIRFIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLK 128
+ L + LW+CY+ ++R+ K + +E+ +A++F L +G +I S +W++YI FLK
Sbjct: 1 MKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLK 59
Query: 129 SLPAAHPQEETHRMTVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQP 188
+ A E +T VR+VYQR + P +IEQLW+DY+ +E ++ LAK +I +
Sbjct: 60 GVEAVGSYAENQGITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSR 119
Query: 189 KYNSARAVYRERKKFFDEIDWNMLAVPPTGSHKASKFLFLCKYWLSLLSVFVNKLFWNDN 248
Y +AR V +E + +D N +VPP + + ++ + + K ++ W +
Sbjct: 120 DYMNARRVAKEYETVMKGLDRNAPSVPPQDTPQEAQQVDMWKKYIQ----------WEKS 169
Query: 249 HFPPKSLCLFLLTGRNAVDVMEETSIF*KRIDIASSNKRVIFTYEQCLMYLYHYPDVWYD 308
N + ++T I KRV+F YEQCL+ L H+PD+WY+
Sbjct: 170 ---------------NPLRTEDQTLI----------TKRVMFAYEQCLLVLGHHPDIWYE 204
Query: 309 YATWHAKAGSI--------------DAAIKVFQRSLKALPDSEMLRY-AYAELEESRGAI 353
A + ++ + D A +++R++ L ML Y AYA+ EESR
Sbjct: 205 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 264
Query: 354 QAAKKIYENLLGDSENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYA 413
+ IY LL + L +IQ+++F RR EG++ R F AR+ +HVYV A
Sbjct: 265 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAA 324
Query: 414 SVAFCLDKDPKMAHNVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALS--SL 471
+ + KD +A +FE GLK + P Y+L Y D+L LN+D N R LFER L+ SL
Sbjct: 325 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 384
Query: 472 PLEDSVEVWKRFVKFEQTYGDLASMLKVEQRRKEAFGEEATAASESSLQDVVSRYSFMDL 531
P E S E+W RF+ FE GDLAS+LKVE+RR AF EE E++L +V RY FMDL
Sbjct: 385 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEE-YEGKETAL--LVDRYKFMDL 441
Query: 532 WPCSSNDLDNLSRQEWLVKNTKKVEKSIMLNGTTFIDKGPVASISTTSSKVVY--PDTSK 589
+PCS+++L L K+ + + + ++ K Y PDT +
Sbjct: 442 YPCSASELKALG-----YKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQ 496
Query: 590 MLIYDPKH--NPGTGAAGTNAFDEILKATPPALVAFLANLP---SVDGPTPNVDIVLSIC 644
M+ + P+H PG F PPA V + LP GP VD ++ I
Sbjct: 497 MIPFQPRHLAPPGLHPVPGGVF-----PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIF 551
Query: 645 LQSDLPTGQSVKVGIPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLD 704
+ +P V I + G E +G +S+ V + + KR D
Sbjct: 552 RRCKIPNTVEEAVRI---ITGGAPELAVEGNGPVESNAVLT----------KAVKRPNED 598
Query: 705 SQEEDDTKSVQSQPLPQDAFRIRQFQKAR 733
S E+++ +V P D +R RQ ++ R
Sbjct: 599 SDEDEEKGAV--VPPVHDIYRARQQKRIR 625
>gb|AAT09321.1| SD14665p [Drosophila melanogaster]
Length = 464
Score = 211 bits (537), Expect = 7e-53
Identities = 148/470 (31%), Positives = 232/470 (48%), Gaps = 40/470 (8%)
Query: 286 KRVIFTYEQCLMYLYHYPDVWYDYATWH-------AKAGSIDAA-------IKVFQRSLK 331
+RV+F EQCL+ L H+P VW+ + + + G + AA + +RS+
Sbjct: 6 RRVMFATEQCLLVLTHHPAVWHQASQFLDTSARVLTEKGDVQAAKIFADECANILERSIN 65
Query: 332 A-LPDSEMLRYAYAELEESRGAIQAAKKIYENLLGDSENATALAHIQFIRFLRRTEGVEP 390
L + +L +AYA+ EE R + +Y LL + L ++Q+++F RR EG++
Sbjct: 66 GVLNRNALLYFAYADFEEGRLKYEKVHTMYNKLLQLPDIDPTLVYVQYMKFARRAEGIKS 125
Query: 391 ARKYFLDARKSPSCTYHVYVAYASVAFCLDKDPKMAHNVFEAGLKHFMHEPVYILEYADF 450
AR F AR+ YH++VA A + + KD ++A +FE GLK F P Y++ Y D+
Sbjct: 126 ARSIFKKAREDVRSRYHIFVAAALMEYYCSKDKEIAFRIFELGLKRFGGSPEYVMCYIDY 185
Query: 451 LIRLNDDQNIRALFERALSS--LPLEDSVEVWKRFVKFEQTYGDLASMLKVEQRRKEAFG 508
L LN+D N R LFER LSS L SVEVW RF++FE GDL+S++KVE+RR F
Sbjct: 186 LSHLNEDNNTRVLFERVLSSGGLSPHKSVEVWNRFLEFESNIGDLSSIVKVERRRSAVF- 244
Query: 509 EEATAASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQEWLVKNTKKVEKSIMLNGTTFID 568
E +V RY F+DL+PC+S +L ++ E + KV G +
Sbjct: 245 ENLKEYEGKETAQLVDRYKFLDLYPCTSTELKSIGYAENVGIILNKVG-----GGAQSQN 299
Query: 569 KGPVASISTTSSKVVYPDTSKMLIYDPK--HNPGTGAAGTNAFDEILKATPPALVAFLAN 626
G V + S + + PD S+M+ + P+ +PG F + PPAL A A
Sbjct: 300 TGEVETDSEATPPLPRPDFSQMIPFKPRPCAHPGAHPLAGGVFPQ-----PPALAALCAT 354
Query: 627 LP---SVDGPTPNVDIVLSICLQSDLPTGQSVKVGIPSQLPA--GPAPATSELSGSSKSH 681
LP S GP +V+++ I ++ +LP G P A + + +S
Sbjct: 355 LPPPNSFRGPFVSVELLFDIFMRLNLPDSAPQPNGDNELSPKIFDLAKSVHWIVDTSTYT 414
Query: 682 PVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQPLPQDAFRIRQFQK 731
VQ ++ + P R R+ L ++ D + + P D +R+RQ ++
Sbjct: 415 GVQHSVTAVPPRR-----RRLLPGGDDSDDELQTAVPPSHDIYRLRQLKR 459
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,249,303,790
Number of Sequences: 2540612
Number of extensions: 52264832
Number of successful extensions: 144325
Number of sequences better than 10.0: 329
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 188
Number of HSP's that attempted gapping in prelim test: 142006
Number of HSP's gapped (non-prelim): 1738
length of query: 757
length of database: 863,360,394
effective HSP length: 136
effective length of query: 621
effective length of database: 517,837,162
effective search space: 321576877602
effective search space used: 321576877602
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)
Medicago: description of AC146910.2