Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146864.1 + phase: 0 
         (194 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC42600.1| unknown protein [Arabidopsis thaliana] gi|289509...    87  2e-16
gb|AAC69944.1| hypothetical protein [Arabidopsis thaliana] gi|25...    61  1e-08
ref|NP_180793.2| TraB family protein [Arabidopsis thaliana]            61  1e-08
gb|AAT93860.1| unknown protein [Oryza sativa (japonica cultivar-...    58  1e-07
pir||C86187 YUP8H12.12 [imported] - Arabidopsis thaliana gi|2388...    51  2e-05
gb|AAO51377.1| similar to Plasmodium falciparum (isolate 3D7). H...    46  7e-04
emb|CAE61510.1| Hypothetical protein CBG05409 [Caenorhabditis br...    44  0.002
gb|AAN14341.1| CG12360-PB, isoform B [Drosophila melanogaster] g...    44  0.003
ref|NP_501005.1| TraB determinant (4H346Co) [Caenorhabditis eleg...    44  0.003
ref|NP_501004.1| TraB determinant (4H346Co) [Caenorhabditis eleg...    44  0.003
gb|AAP40537.1| Hypothetical protein F38A5.2b [Caenorhabditis ele...    44  0.003
gb|AAP40536.1| Hypothetical protein F38A5.2a [Caenorhabditis ele...    44  0.003
pir||T29896 hypothetical protein F38A5.2 - Caenorhabditis elegans      44  0.003
emb|CAI42754.1| OTTHUMP00000028551 [Homo sapiens] gi|11125142|em...    43  0.006
gb|AAH93029.1| PP2447 protein [Homo sapiens] gi|37782444|gb|AAP3...    43  0.006
ref|XP_515215.1| PREDICTED: similar to LP6054 [Pan troglodytes]        43  0.006
gb|AAH55655.1| Unknown (protein for MGC:66436) [Danio rerio] gi|...    43  0.006
ref|NP_248368.1| pheromone shutdown protein (traB) [Methanocaldo...    42  0.009
gb|EAL27644.1| GA11581-PA [Drosophila pseudoobscura]                   42  0.009
ref|XP_538316.1| PREDICTED: similar to pannexin 2 [Canis familia...    42  0.012

>dbj|BAC42600.1| unknown protein [Arabidopsis thaliana] gi|28950927|gb|AAO63387.1|
           At1g05270 [Arabidopsis thaliana]
           gi|30679206|ref|NP_172019.3| TraB family protein
           [Arabidopsis thaliana] gi|51969614|dbj|BAD43499.1|
           unknown protein [Arabidopsis thaliana]
          Length = 371

 Score = 87.4 bits (215), Expect = 2e-16
 Identities = 40/78 (51%), Positives = 57/78 (72%)

Query: 48  RLELPKELTKNVIQLSCDSMEKGGVCDVYLVGTFHGNKESSKQVEEIVKFLKPEIVFLEL 107
           ++ELP+EL K+V+ L+C+S   GG CDVYLVGT H +K+S  +VE I+  LKPE+VF+EL
Sbjct: 84  KVELPEELAKSVVILTCESTADGGSCDVYLVGTAHVSKQSCLEVEAIISILKPEVVFVEL 143

Query: 108 CSDRQEVLLHDNMEVSTI 125
           CS R  VL    +++ T+
Sbjct: 144 CSSRLSVLKPQTLKIPTM 161


>gb|AAC69944.1| hypothetical protein [Arabidopsis thaliana] gi|25370765|pir||H84731
           hypothetical protein At2g32340 [imported] - Arabidopsis
           thaliana
          Length = 302

 Score = 61.2 bits (147), Expect = 1e-08
 Identities = 29/61 (47%), Positives = 43/61 (69%), Gaps = 3/61 (4%)

Query: 44  ERQRRLELPKELTKNVIQLSCDSMEKGGVCDVYLVGTFHGNK---ESSKQVEEIVKFLKP 100
           E   +LELP+E  K+V+ L+C+S  +GG CDVYLVGT H ++   ES ++VE ++  LKP
Sbjct: 66  ETTEKLELPEEFAKSVMVLTCESTAEGGSCDVYLVGTAHVSQVILESCREVEAVISALKP 125

Query: 101 E 101
           +
Sbjct: 126 Q 126


>ref|NP_180793.2| TraB family protein [Arabidopsis thaliana]
          Length = 272

 Score = 61.2 bits (147), Expect = 1e-08
 Identities = 29/61 (47%), Positives = 43/61 (69%), Gaps = 3/61 (4%)

Query: 44  ERQRRLELPKELTKNVIQLSCDSMEKGGVCDVYLVGTFHGNK---ESSKQVEEIVKFLKP 100
           E   +LELP+E  K+V+ L+C+S  +GG CDVYLVGT H ++   ES ++VE ++  LKP
Sbjct: 66  ETTEKLELPEEFAKSVMVLTCESTAEGGSCDVYLVGTAHVSQVILESCREVEAVISALKP 125

Query: 101 E 101
           +
Sbjct: 126 Q 126


>gb|AAT93860.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 335

 Score = 58.2 bits (139), Expect = 1e-07
 Identities = 29/67 (43%), Positives = 45/67 (66%), Gaps = 7/67 (10%)

Query: 42  EKERQRRLELPKELTKNVIQLSCDSMEK------GGVCDVYLVGTFHGNKESSKQVEEIV 95
           E ER+R+ ELP+EL K V+ L C++  +      GG C VY+VGT H ++ES  QV+ ++
Sbjct: 95  EGERERK-ELPEELAKGVVCLECETSPEAEAAGAGGTCRVYVVGTAHVSQESCDQVKAVI 153

Query: 96  KFLKPEI 102
            +LKP++
Sbjct: 154 DYLKPQV 160


>pir||C86187 YUP8H12.12 [imported] - Arabidopsis thaliana
           gi|2388570|gb|AAB71451.1| YUP8H12.12 [Arabidopsis
           thaliana]
          Length = 146

 Score = 50.8 bits (120), Expect = 2e-05
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query: 48  RLELPKELTKNVIQLSCDSMEKGGVCDVYLVGTFHGNK 85
           ++ELP+EL K+V+ L+C+S   GG CDVYLVGT H +K
Sbjct: 84  KVELPEELAKSVVILTCESTADGGSCDVYLVGTAHVSK 121


>gb|AAO51377.1| similar to Plasmodium falciparum (isolate 3D7). Hypothetical
           protein [Dictyostelium discoideum]
           gi|66822687|ref|XP_644698.1| hypothetical protein
           DDB0168039 [Dictyostelium discoideum]
           gi|66822397|ref|XP_644553.1| hypothetical protein
           DDB0217350 [Dictyostelium discoideum]
           gi|60472844|gb|EAL70793.1| hypothetical protein
           DDB0168039 [Dictyostelium discoideum]
           gi|60472676|gb|EAL70627.1| hypothetical protein
           DDB0217350 [Dictyostelium discoideum]
          Length = 705

 Score = 45.8 bits (107), Expect = 7e-04
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query: 75  VYLVGTFHGNKESSKQVEEIVKFLKPEIVFLELCSDRQEVLLHDNMEVSTILVHISDN 132
           + L+G+ H +K SS +V EI++  KP+ VF+ELCS R  ++ + N + S    + ++N
Sbjct: 107 IILIGSVHIHKGSSDEVSEIIRKWKPDTVFVELCSSRAGIIFNTNNDDSDYYYNNNNN 164


>emb|CAE61510.1| Hypothetical protein CBG05409 [Caenorhabditis briggsae]
          Length = 453

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 75  VYLVGTFHGNKESSKQVEEIVKFLKPEIVFLELCSDRQEVLLHDNMEVSTILVHISDNAI 134
           VYLVGT H +KES + V   ++ ++P+ V LELC  R  ++  D   + +    ++   I
Sbjct: 158 VYLVGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLNTQKI 217

Query: 135 M 135
           M
Sbjct: 218 M 218


>gb|AAN14341.1| CG12360-PB, isoform B [Drosophila melanogaster]
           gi|7299711|gb|AAF54893.1| CG12360-PA, isoform A
           [Drosophila melanogaster] gi|17944306|gb|AAL48046.1|
           RE12073p [Drosophila melanogaster]
           gi|24646455|ref|NP_731765.1| CG12360-PB, isoform B
           [Drosophila melanogaster] gi|21357445|ref|NP_650253.1|
           CG12360-PA, isoform A [Drosophila melanogaster]
          Length = 532

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 75  VYLVGTFHGNKESSKQVEEIVKFLKPEIVFLELCSDRQEVLLHDNMEVSTILVHISDNAI 134
           VYLVGT H ++ES   V  +++ ++P++V +ELC  R  +L    ++  T+L       I
Sbjct: 253 VYLVGTAHFSEESQDDVSYVIRNVRPDVVMVELCPSRIHIL---KLDEKTLLEEAKSINI 309

Query: 135 MTIRCSFSCIDNQHYHSIINFFNFSQALTM 164
             IR         H H  IN   F   L M
Sbjct: 310 PKIRGIL------HTHGYINGIFFILLLQM 333


>ref|NP_501005.1| TraB determinant (4H346Co) [Caenorhabditis elegans]
          Length = 451

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 21/64 (32%), Positives = 35/64 (53%), Gaps = 2/64 (3%)

Query: 57  KNVIQLSCDSMEKGGVCD--VYLVGTFHGNKESSKQVEEIVKFLKPEIVFLELCSDRQEV 114
           +N +    D   K  + D  +YL+GT H +KES + V   ++ ++P+ V LELC  R  +
Sbjct: 136 RNPVLSDSDEEWKKAILDSTIYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISI 195

Query: 115 LLHD 118
           +  D
Sbjct: 196 ISMD 199


>ref|NP_501004.1| TraB determinant (4H346Co) [Caenorhabditis elegans]
          Length = 453

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 21/64 (32%), Positives = 35/64 (53%), Gaps = 2/64 (3%)

Query: 57  KNVIQLSCDSMEKGGVCD--VYLVGTFHGNKESSKQVEEIVKFLKPEIVFLELCSDRQEV 114
           +N +    D   K  + D  +YL+GT H +KES + V   ++ ++P+ V LELC  R  +
Sbjct: 138 RNPVLSDSDEEWKKAILDSTIYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISI 197

Query: 115 LLHD 118
           +  D
Sbjct: 198 ISMD 201


>gb|AAP40537.1| Hypothetical protein F38A5.2b [Caenorhabditis elegans]
          Length = 450

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 21/64 (32%), Positives = 35/64 (53%), Gaps = 2/64 (3%)

Query: 57  KNVIQLSCDSMEKGGVCD--VYLVGTFHGNKESSKQVEEIVKFLKPEIVFLELCSDRQEV 114
           +N +    D   K  + D  +YL+GT H +KES + V   ++ ++P+ V LELC  R  +
Sbjct: 136 RNPVLSDSDEEWKKAILDSTIYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISI 195

Query: 115 LLHD 118
           +  D
Sbjct: 196 ISMD 199


>gb|AAP40536.1| Hypothetical protein F38A5.2a [Caenorhabditis elegans]
          Length = 452

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 21/64 (32%), Positives = 35/64 (53%), Gaps = 2/64 (3%)

Query: 57  KNVIQLSCDSMEKGGVCD--VYLVGTFHGNKESSKQVEEIVKFLKPEIVFLELCSDRQEV 114
           +N +    D   K  + D  +YL+GT H +KES + V   ++ ++P+ V LELC  R  +
Sbjct: 138 RNPVLSDSDEEWKKAILDSTIYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISI 197

Query: 115 LLHD 118
           +  D
Sbjct: 198 ISMD 201


>pir||T29896 hypothetical protein F38A5.2 - Caenorhabditis elegans
          Length = 465

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 21/64 (32%), Positives = 35/64 (53%), Gaps = 2/64 (3%)

Query: 57  KNVIQLSCDSMEKGGVCD--VYLVGTFHGNKESSKQVEEIVKFLKPEIVFLELCSDRQEV 114
           +N +    D   K  + D  +YL+GT H +KES + V   ++ ++P+ V LELC  R  +
Sbjct: 150 RNPVLSDSDEEWKKAILDSTIYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISI 209

Query: 115 LLHD 118
           +  D
Sbjct: 210 ISMD 213


>emb|CAI42754.1| OTTHUMP00000028551 [Homo sapiens] gi|11125142|emb|CAC15001.1|
           hypothetical protein [Homo sapiens]
           gi|20141036|sp|Q9H4I3|YV03_HUMAN Hypothetical protein
           PP2447 gi|33342278|ref|NP_079480.2| hypothetical protein
           LOC80305 [Homo sapiens]
          Length = 376

 Score = 42.7 bits (99), Expect = 0.006
 Identities = 28/84 (33%), Positives = 48/84 (56%), Gaps = 12/84 (14%)

Query: 43  KERQRRLELPKELTKNVIQLSCDSMEKGGVCDVYLVGTFHGNKESSKQVEEIVKFLKPEI 102
           K R++R  LP+ +T+ V        E G    VY+VGT H + +S + V + ++ ++P++
Sbjct: 52  KRRRQRPNLPRTVTQLVA-------EDGS--RVYVVGTAHFSDDSKRDVVKTIREVQPDV 102

Query: 103 VFLELCSDRQEVLLHDNMEVSTIL 126
           V +ELC  R  +L    M+ ST+L
Sbjct: 103 VVVELCQYRVSML---KMDESTLL 123


>gb|AAH93029.1| PP2447 protein [Homo sapiens] gi|37782444|gb|AAP34468.1| LP6054
           [Homo sapiens]
          Length = 292

 Score = 42.7 bits (99), Expect = 0.006
 Identities = 28/84 (33%), Positives = 48/84 (56%), Gaps = 12/84 (14%)

Query: 43  KERQRRLELPKELTKNVIQLSCDSMEKGGVCDVYLVGTFHGNKESSKQVEEIVKFLKPEI 102
           K R++R  LP+ +T+ V        E G    VY+VGT H + +S + V + ++ ++P++
Sbjct: 52  KRRRQRPNLPRTVTQLVA-------EDGS--RVYVVGTAHFSDDSKRDVVKTIREVQPDV 102

Query: 103 VFLELCSDRQEVLLHDNMEVSTIL 126
           V +ELC  R  +L    M+ ST+L
Sbjct: 103 VVVELCQYRVSML---KMDESTLL 123


>ref|XP_515215.1| PREDICTED: similar to LP6054 [Pan troglodytes]
          Length = 884

 Score = 42.7 bits (99), Expect = 0.006
 Identities = 28/84 (33%), Positives = 48/84 (56%), Gaps = 12/84 (14%)

Query: 43  KERQRRLELPKELTKNVIQLSCDSMEKGGVCDVYLVGTFHGNKESSKQVEEIVKFLKPEI 102
           K R++R  LP+ +T+ V        E G    VY+VGT H + +S + V + ++ ++P++
Sbjct: 167 KRRRQRPNLPRTVTQLVA-------EDGS--RVYVVGTAHFSDDSKRDVVKTIREVQPDV 217

Query: 103 VFLELCSDRQEVLLHDNMEVSTIL 126
           V +ELC  R  +L    M+ ST+L
Sbjct: 218 VVVELCQYRVSML---KMDESTLL 238


>gb|AAH55655.1| Unknown (protein for MGC:66436) [Danio rerio]
           gi|47086787|ref|NP_997788.1| hypothetical protein
           LOC322581 [Danio rerio]
          Length = 360

 Score = 42.7 bits (99), Expect = 0.006
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 12/89 (13%)

Query: 43  KERQRRLELPKELTKNVIQLSCDSMEKGGVCDVYLVGTFHGNKESSKQVEEIVKFLKPEI 102
           + RQ+  +LP+ +T+        +  +G V  VYLVGT H +  S K V   ++ ++P++
Sbjct: 42  QRRQKEPDLPETVTRL-------TTPEGSV--VYLVGTAHFSDSSKKDVATTIRAVQPDV 92

Query: 103 VFLELCSDRQEVLLHDNMEVSTILVHISD 131
           V +ELC  R  +L    M+  T+L    D
Sbjct: 93  VVVELCQYRVSML---KMDEKTLLKEAKD 118


>ref|NP_248368.1| pheromone shutdown protein (traB) [Methanocaldococcus jannaschii
           DSM 2661] gi|1592009|gb|AAB99373.1| pheromone shutdown
           protein (traB) [Methanocaldococcus jannaschii DSM 2661]
           gi|2129184|pir||D64470 probable pheromone shutdown
           protein - Methanococcus jannaschii
           gi|41018430|sp|Q58760|YD65_METJA Hypothetical protein
           MJ1365
          Length = 397

 Score = 42.0 bits (97), Expect = 0.009
 Identities = 21/49 (42%), Positives = 33/49 (66%), Gaps = 1/49 (2%)

Query: 73  CDVYLVGTFHGNKESSKQVEEIVKFLKPEIVFLELCSDRQEVLLHDNME 121
           CD+YL+GT H +K+S ++VE+I+  + PE + +EL  DR+   L  N E
Sbjct: 17  CDIYLIGTAHVSKDSIEEVEKIISSVSPEGIAVEL-DDRRFFSLITNEE 64


>gb|EAL27644.1| GA11581-PA [Drosophila pseudoobscura]
          Length = 545

 Score = 42.0 bits (97), Expect = 0.009
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 75  VYLVGTFHGNKESSKQVEEIVKFLKPEIVFLELCSDRQEVLLHDNMEVSTILVHISDNAI 134
           VYLVGT H ++ES   V  +++ ++P++V +ELC  R  +L    ++  T+L    +  I
Sbjct: 266 VYLVGTAHFSEESQDDVSFVIRNVRPDVVMVELCPSRIHIL---KLDEKTLLEEAKNINI 322

Query: 135 MTIR 138
             IR
Sbjct: 323 PKIR 326


>ref|XP_538316.1| PREDICTED: similar to pannexin 2 [Canis familiaris]
          Length = 1363

 Score = 41.6 bits (96), Expect = 0.012
 Identities = 27/85 (31%), Positives = 48/85 (55%), Gaps = 9/85 (10%)

Query: 42  EKERQRRLELPKELTKNVIQLSCDSMEKGGVCDVYLVGTFHGNKESSKQVEEIVKFLKPE 101
           E + +RR E P  L + V +L  +   +     VY+VGT H + +S + V + ++ ++P+
Sbjct: 766 EMKLRRRRERPS-LPRTVTELVAEDGSR-----VYVVGTAHFSDDSKRDVVKTIREVQPD 819

Query: 102 IVFLELCSDRQEVLLHDNMEVSTIL 126
           +V +ELC  R  +L    M+ ST+L
Sbjct: 820 VVVVELCQYRVSML---KMDESTLL 841


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.324    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 293,087,549
Number of Sequences: 2540612
Number of extensions: 10706370
Number of successful extensions: 36745
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 36682
Number of HSP's gapped (non-prelim): 76
length of query: 194
length of database: 863,360,394
effective HSP length: 121
effective length of query: 73
effective length of database: 555,946,342
effective search space: 40584082966
effective search space used: 40584082966
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 71 (32.0 bits)


Medicago: description of AC146864.1