BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146862.17 + phase: 0
(310 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF26999.1| putative tRNA pseudouridine synthase [Arabidopsis... 408 e-113
ref|NP_187351.2| tRNA pseudouridine synthase family protein [Ara... 408 e-113
emb|CAF23052.1| putative tRNA pseudouridylate synthase I [Parach... 195 2e-48
ref|ZP_00510106.1| tRNA pseudouridine synthase [Clostridium ther... 171 2e-41
ref|NP_623798.1| Pseudouridylate synthase (tRNA psi55) [Thermoan... 171 2e-41
sp|Q8XLQ0|TRUA1_CLOPE tRNA pseudouridine synthase A 1 (tRNA-urid... 171 2e-41
ref|NP_691071.1| tRNA pseudouridine synthase A [Oceanobacillus i... 170 6e-41
ref|NP_388029.1| pseudouridylate synthase I [Bacillus subtilis s... 169 1e-40
gb|AAP98533.1| pseudouridylate synthase I [Chlamydophila pneumon... 168 2e-40
ref|NP_300636.1| pseudouridylate synthase I [Chlamydophila pneum... 168 2e-40
ref|YP_145991.1| pseudouridylate synthaseI [Geobacillus kaustoph... 168 2e-40
gb|AAP07243.1| tRNA pseudouridine synthase A [Bacillus cereus AT... 167 4e-40
sp|Q814C2|TRUA1_BACCR tRNA pseudouridine synthase A 1 (tRNA-urid... 166 6e-40
sp|Q9PJT0|TRUA_CHLMU tRNA pseudouridine synthase A (tRNA-uridine... 166 6e-40
gb|AAO36369.1| tRNA pseudouridine synthase A [Clostridium tetani... 166 8e-40
ref|ZP_00390546.1| COG0101: Pseudouridylate synthase [Bacillus a... 166 1e-39
sp|Q73F64|TRUA1_BACC1 tRNA pseudouridine synthase A 1 (tRNA-urid... 165 1e-39
emb|CAH63617.1| putative tRNA pseudouridine synthase a [Chlamydo... 165 2e-39
ref|ZP_00240905.1| tRNA pseudouridine synthase A [Bacillus cereu... 164 2e-39
ref|YP_034493.1| tRNA pseudouridine synthase A (pseudouridylate ... 164 3e-39
>gb|AAF26999.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana]
Length = 298
Score = 408 bits (1049), Expect = e-113
Identities = 199/293 (67%), Positives = 234/293 (78%), Gaps = 3/293 (1%)
Query: 20 TSLLSPNQDGYKWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGA 79
+S+ + YKWRL+++YDGTR+AGWQYQESPPT+Q +EKALI+ T+L RK+LQL+GA
Sbjct: 6 SSVKVSDSGAYKWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGA 65
Query: 80 SRTDAGVHAWGQVAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKS 139
RTDAGVHAWGQVAHF+TPFNY +LDS HAALNGLLP DIRVRE+S A EFHARFS S
Sbjct: 66 GRTDAGVHAWGQVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASS 125
Query: 140 KIYHYKIYSDTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPD 199
K+Y Y+IY+DT MDPFQRH+AYH YKLN++ MREAA F+GKHDF+AF NA+ D +PD
Sbjct: 126 KVYRYQIYNDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPD 185
Query: 200 PVKHIFPIDVKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDR 259
P+K I DV +MG+LLQLEVEGSGFLYRQVRNMVALL+QIGKEA DIVP IL ++DR
Sbjct: 186 PLKTISRFDVIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDR 245
Query: 260 KELAKYCYYLP--PHGLCLVSINYNESHLLPPPGCPAKSFGMHHTIRKCKVVF 310
+ LAKY LP PHGLCLVS+ Y E HL P CP S G HHTI KCK+ F
Sbjct: 246 RVLAKYT-SLPASPHGLCLVSVKYKEDHLKLPLDCPVTSSGRHHTITKCKLPF 297
>ref|NP_187351.2| tRNA pseudouridine synthase family protein [Arabidopsis thaliana]
Length = 323
Score = 408 bits (1049), Expect = e-113
Identities = 199/293 (67%), Positives = 234/293 (78%), Gaps = 3/293 (1%)
Query: 20 TSLLSPNQDGYKWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGA 79
+S+ + YKWRL+++YDGTR+AGWQYQESPPT+Q +EKALI+ T+L RK+LQL+GA
Sbjct: 31 SSVKVSDSGAYKWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGA 90
Query: 80 SRTDAGVHAWGQVAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKS 139
RTDAGVHAWGQVAHF+TPFNY +LDS HAALNGLLP DIRVRE+S A EFHARFS S
Sbjct: 91 GRTDAGVHAWGQVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASS 150
Query: 140 KIYHYKIYSDTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPD 199
K+Y Y+IY+DT MDPFQRH+AYH YKLN++ MREAA F+GKHDF+AF NA+ D +PD
Sbjct: 151 KVYRYQIYNDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPD 210
Query: 200 PVKHIFPIDVKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDR 259
P+K I DV +MG+LLQLEVEGSGFLYRQVRNMVALL+QIGKEA DIVP IL ++DR
Sbjct: 211 PLKTISRFDVIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDR 270
Query: 260 KELAKYCYYLP--PHGLCLVSINYNESHLLPPPGCPAKSFGMHHTIRKCKVVF 310
+ LAKY LP PHGLCLVS+ Y E HL P CP S G HHTI KCK+ F
Sbjct: 271 RVLAKYT-SLPASPHGLCLVSVKYKEDHLKLPLDCPVTSSGRHHTITKCKLPF 322
>emb|CAF23052.1| putative tRNA pseudouridylate synthase I [Parachlamydia sp. UWE25]
gi|51316632|sp|Q6MEE7|TRUA1_PARUW tRNA pseudouridine
synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1)
gi|46445962|ref|YP_007327.1| putative tRNA
pseudouridylate synthase I [Parachlamydia sp. UWE25]
Length = 256
Score = 195 bits (495), Expect = 2e-48
Identities = 98/255 (38%), Positives = 160/255 (62%), Gaps = 7/255 (2%)
Query: 32 WRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQ 91
++L ++YDGT Y+GWQ Q + ++Q +++AL L+++ + LVG+ RTDAGVHA GQ
Sbjct: 4 YKLTIAYDGTNYSGWQIQPNASSIQQKIQEAL--CILLKKEKVVLVGSGRTDAGVHAKGQ 61
Query: 92 VAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTI 151
VAHF +Y +L +H +LNGLLP DIR++ + P S FH+++S K YHY ++ + +
Sbjct: 62 VAHFHFQ-DYIDLSRLHVSLNGLLPRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLNKV 120
Query: 152 MDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASH-NDRIPDPVKHIFPIDVK 210
MDPFQR +++H K++ +++AA F G HDFT+F N +H +PV+ ++ +D+K
Sbjct: 121 MDPFQRLYSWHFQRKIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLDIK 180
Query: 211 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLP 270
L+LE EG GFLY+ VRN+V L+ + + + I A+++R++ + P
Sbjct: 181 PNEGGLRLEFEGDGFLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQAS---LAAP 237
Query: 271 PHGLCLVSINYNESH 285
P GL L+ + Y +
Sbjct: 238 PEGLFLIQVFYENEN 252
>ref|ZP_00510106.1| tRNA pseudouridine synthase [Clostridium thermocellum ATCC 27405]
gi|67849645|gb|EAM45244.1| tRNA pseudouridine synthase
[Clostridium thermocellum ATCC 27405]
Length = 244
Score = 171 bits (434), Expect = 2e-41
Identities = 95/249 (38%), Positives = 140/249 (56%), Gaps = 9/249 (3%)
Query: 33 RLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQV 92
+L++ YDGT Y GWQ Q++ TVQ +E+A+ L + + L+GASRTD GVHA GQV
Sbjct: 5 KLIIEYDGTNYHGWQKQKNAKTVQDTIERAI---KGLTGEKVDLIGASRTDFGVHALGQV 61
Query: 93 AHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIM 152
A+F+T D ALN +LP DI ++E +FHAR+ K K Y Y IY+
Sbjct: 62 ANFITNSGIPG-DRFSYALNRMLPDDIVIKESQEVDMDFHARYKAKGKRYRYLIYNSQFP 120
Query: 153 DPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEM 212
RH YH +KL+ +M+ AA YF+G HDF+AF ++ + + V+ I + ++
Sbjct: 121 SALLRHRTYHVSHKLDFESMQRAASYFLGTHDFSAFRSSGSSAK--TSVRTITDVSLERE 178
Query: 213 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPH 272
+++ E+ G GFLY VR +V L+++G D +P I+ SR RK + P
Sbjct: 179 DKIVKFEIAGDGFLYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGRTA---PAE 235
Query: 273 GLCLVSINY 281
GL LV + Y
Sbjct: 236 GLYLVEVYY 244
>ref|NP_623798.1| Pseudouridylate synthase (tRNA psi55) [Thermoanaerobacter
tengcongensis MB4] gi|20517260|gb|AAM25402.1|
Pseudouridylate synthase (tRNA psi55)
[Thermoanaerobacter tengcongensis MB4]
gi|24212532|sp|Q8R7Y7|TRUA_THETN tRNA pseudouridine
synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I)
Length = 240
Score = 171 bits (434), Expect = 2e-41
Identities = 103/248 (41%), Positives = 147/248 (58%), Gaps = 9/248 (3%)
Query: 34 LLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVA 93
L++ YDGT Y GWQYQ++ TVQ +EKA+ + T + + L+G+SRTD GVHA QVA
Sbjct: 2 LIIEYDGTNYHGWQYQKNAITVQEVLEKAIEKVTG---EKVNLIGSSRTDTGVHALYQVA 58
Query: 94 HFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMD 153
+F T + + ALN +LP D+ V + FHAR+S +SK Y Y I +
Sbjct: 59 NFKTKTKIPP-EKLPYALNAVLPDDVVVVKAKEVDKSFHARYSARSKRYRYLILNRQFPM 117
Query: 154 PFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMG 213
P R++ +H Y L+ AM++AA +F G HDF+AF+ AS N ++ +PVK IF + V++ G
Sbjct: 118 PTMRNYCWHVPYPLDVEAMKKAAFFFRGTHDFSAFK-ASGNKKV-NPVKTIFDLTVEKEG 175
Query: 214 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHG 273
L+++EVE GFLY VR +V L+ +G +P I+ S+DR K PP G
Sbjct: 176 DLIKIEVEADGFLYNMVRIIVGTLVYVGLGKIKAGEIPAIIESKDR---TKAGITAPPQG 232
Query: 274 LCLVSINY 281
L LV I Y
Sbjct: 233 LYLVRIVY 240
>sp|Q8XLQ0|TRUA1_CLOPE tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1)
gi|18144651|dbj|BAB80697.1| tRNA-pseudouridine synthase
I [Clostridium perfringens str. 13]
gi|18309973|ref|NP_561907.1| tRNA-pseudouridine synthase
I [Clostridium perfringens str. 13]
Length = 248
Score = 171 bits (434), Expect = 2e-41
Identities = 101/253 (39%), Positives = 143/253 (55%), Gaps = 13/253 (5%)
Query: 33 RLLLSYDGTRYAGWQYQESP----PTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHA 88
++ L YDG++Y GWQ Q TVQ +EK L TK+ +++QL+G RTD+GVHA
Sbjct: 5 KITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVL---TKMTSEEIQLIGCGRTDSGVHA 61
Query: 89 WGQVAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYS 148
VA+F T + L+ + +N LP DIRV EI AS FHARF+VKSK Y Y I +
Sbjct: 62 KNYVANFKTN-SLMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDN 120
Query: 149 DTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPID 208
+ D F R +A+H KL+ AM E A+Y +G HDF +F + ++ ++ I I+
Sbjct: 121 NKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNK--STLRTINSIE 178
Query: 209 VKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYY 268
E +L +++ G+GFL VR MV L+ +G P + IL + KE AK
Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIMVGTLVDVGLGKIEPKYINDIL---EAKERAKASEK 235
Query: 269 LPPHGLCLVSINY 281
P HGLCL+ +NY
Sbjct: 236 APAHGLCLLELNY 248
>ref|NP_691071.1| tRNA pseudouridine synthase A [Oceanobacillus iheyensis HTE831]
gi|38258776|sp|Q8CXP1|TRUA_OCEIH tRNA pseudouridine
synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) gi|22775828|dbj|BAC12106.1|
tRNA pseudouridine synthase A [Oceanobacillus iheyensis
HTE831]
Length = 253
Score = 170 bits (430), Expect = 6e-41
Identities = 94/249 (37%), Positives = 148/249 (58%), Gaps = 7/249 (2%)
Query: 36 LSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVAHF 95
+SYDG+ +AG+Q Q TVQ +EKAL K K +++ + RTD GVHA GQV HF
Sbjct: 8 VSYDGSDFAGFQVQPDHRTVQGVLEKALYNMHK--GKSIRIQASGRTDTGVHAVGQVIHF 65
Query: 96 LTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDPF 155
+P + A LN LLP D+R++++ + EFHAR+SVK K YHY + ++ + F
Sbjct: 66 DSPLEIPERNWKQA-LNTLLPDDVRIQKVEKKTEEFHARYSVKEKEYHYFVLNEEDPNVF 124
Query: 156 QRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMGAL 215
QR + YH KL+ M+EA +Y G HDFT+F +A + + V+ ++ + + G
Sbjct: 125 QRGYVYHEPRKLDLERMQEACQYLEGTHDFTSFSSAKSSVK-GSKVRTLYHVSCHQTGTN 183
Query: 216 LQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGLC 275
++ GSGFLY VR M+++L+ +GK P+ + +LAS++R+++ K + P GL
Sbjct: 184 IEFIFRGSGFLYNMVRIMMSVLIDVGKGKRNPEDIIDLLASKNRQQIGK---TMAPQGLY 240
Query: 276 LVSINYNES 284
L ++Y E+
Sbjct: 241 LWRVSYEEN 249
>ref|NP_388029.1| pseudouridylate synthase I [Bacillus subtilis subsp. subtilis str.
168] gi|2632415|emb|CAB11924.1| pseudouridylate synthase
I [Bacillus subtilis subsp. subtilis str. 168]
gi|3915172|sp|P70973|TRUA_BACSU tRNA pseudouridine
synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) gi|1644206|dbj|BAA10987.1|
unknown [Bacillus subtilis]
Length = 247
Score = 169 bits (428), Expect = 1e-40
Identities = 102/247 (41%), Positives = 141/247 (56%), Gaps = 7/247 (2%)
Query: 36 LSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVAHF 95
+SYDG + G+Q Q TVQ +EKAL K + + + +V + RTD+GVHA GQV HF
Sbjct: 7 ISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHF 65
Query: 96 LTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDPF 155
TP + + ALN LLP DI V++ A FHARFS K Y Y +Y++ D F
Sbjct: 66 DTPLSIP-AERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVF 124
Query: 156 QRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMGAL 215
+RH+AYH Y+LN MREAA++ IG HDFT+F + + D V+ I+ +D E
Sbjct: 125 KRHYAYHFSYRLNVQDMREAAKHPIGTHDFTSF--CAAKTEVQDKVRTIYELDWTETADG 182
Query: 216 LQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGLC 275
LQ+ + GSGFLY VR + LL G PD V +L ++DR+ + P HGL
Sbjct: 183 LQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAERTA---PGHGLY 239
Query: 276 LVSINYN 282
L ++ Y+
Sbjct: 240 LWNVYYD 246
>gb|AAP98533.1| pseudouridylate synthase I [Chlamydophila pneumoniae TW-183]
gi|33241935|ref|NP_876876.1| pseudouridylate synthase I
[Chlamydophila pneumoniae TW-183]
gi|15618490|ref|NP_224776.1| Pseudouridylate Synthase I
[Chlamydophila pneumoniae CWL029]
gi|4376873|gb|AAD18719.1| Pseudouridylate Synthase I
[Chlamydophila pneumoniae CWL029]
Length = 267
Score = 168 bits (425), Expect = 2e-40
Identities = 96/252 (38%), Positives = 142/252 (56%), Gaps = 9/252 (3%)
Query: 31 KWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWG 90
K LL++Y GT Y+GWQ Q + ++Q +E +L + TK + L+ + RTDAGVHA+G
Sbjct: 3 KVALLIAYQGTAYSGWQQQPNDLSIQEVIESSLKKITKTRTP---LIASGRTDAGVHAYG 59
Query: 91 QVAHFLTPFN--YDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYS 148
QVAHF P + + N + ALN +LP DI +R+++ FHAR+ +K Y Y +
Sbjct: 60 QVAHFRAPDHPLFANANLTKKALNAILPKDIVIRDVALFDDNFHARYLAIAKEYRYSLSR 119
Query: 149 DTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPID 208
P+QRHF Y + ++ M+E A IG HDF +F N H V+ I+ +D
Sbjct: 120 LAKPLPWQRHFCYTPRHPFSTELMQEGANLLIGTHDFASFAN--HGRDYNSTVRTIYTLD 177
Query: 209 VKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKE--LAKYC 266
+ + G L + G+GFLY+ VRN+V LL +GK A PP+ + IL ++R+E A
Sbjct: 178 IVDKGDSLSIICRGNGFLYKMVRNLVGALLDVGKGAYPPEHLLDILEQKNRREGPSAAPA 237
Query: 267 YYLPPHGLCLVS 278
Y L H +C S
Sbjct: 238 YGLSLHHVCYSS 249
>ref|NP_300636.1| pseudouridylate synthase I [Chlamydophila pneumoniae J138]
gi|7189101|gb|AAF38045.1| tRNA pseudouridine synthase A
[Chlamydophila pneumoniae AR39]
gi|12644497|sp|Q9Z7X4|TRUA_CHLPN tRNA pseudouridine
synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) gi|8978952|dbj|BAA98787.1|
pseudouridylate synthase I [Chlamydophila pneumoniae
J138] gi|16752458|ref|NP_444720.1| tRNA pseudouridine
synthase A [Chlamydophila pneumoniae AR39]
Length = 267
Score = 168 bits (425), Expect = 2e-40
Identities = 96/252 (38%), Positives = 142/252 (56%), Gaps = 9/252 (3%)
Query: 31 KWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWG 90
K LL++Y GT Y+GWQ Q + ++Q +E +L + TK + L+ + RTDAGVHA+G
Sbjct: 3 KVALLIAYQGTAYSGWQQQPNDLSIQEVIESSLKKITKTRTP---LIASGRTDAGVHAYG 59
Query: 91 QVAHFLTPFN--YDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYS 148
QVAHF P + + N + ALN +LP DI +R+++ FHAR+ +K Y Y +
Sbjct: 60 QVAHFRAPDHPLFANANLTKKALNAILPKDIVIRDVALFDDNFHARYLTIAKEYRYSLSR 119
Query: 149 DTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPID 208
P+QRHF Y + ++ M+E A IG HDF +F N H V+ I+ +D
Sbjct: 120 LAKPLPWQRHFCYTPRHPFSTELMQEGANLLIGTHDFASFAN--HGRDYNSTVRTIYTLD 177
Query: 209 VKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKE--LAKYC 266
+ + G L + G+GFLY+ VRN+V LL +GK A PP+ + IL ++R+E A
Sbjct: 178 IVDKGDSLSIICRGNGFLYKMVRNLVGALLDVGKGAYPPEHLLDILEQKNRREGPSAAPA 237
Query: 267 YYLPPHGLCLVS 278
Y L H +C S
Sbjct: 238 YGLSLHHVCYSS 249
>ref|YP_145991.1| pseudouridylate synthaseI [Geobacillus kaustophilus HTA426]
gi|56378515|dbj|BAD74423.1| pseudouridylate synthaseI
[Geobacillus kaustophilus HTA426]
gi|62901182|sp|Q5L3Q7|TRUA_GEOKA tRNA pseudouridine
synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I)
Length = 258
Score = 168 bits (425), Expect = 2e-40
Identities = 99/255 (38%), Positives = 146/255 (56%), Gaps = 8/255 (3%)
Query: 33 RLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQV 92
+ +++YDGT ++G+Q Q TVQ E+ L R K + +++ + RTDAGVHA+GQV
Sbjct: 6 KCIIAYDGTHFSGYQIQPGKRTVQGEFEEVLRRMHKGTK--VRVAASGRTDAGVHAYGQV 63
Query: 93 AHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIM 152
HF TP + + + ALN LP DI VR + A A+FHARFS K+K Y YK+++
Sbjct: 64 IHFDTPLSLSS-EQWKKALNAQLPDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAAER 122
Query: 153 DPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEM 212
D F+RH+ + Y L+ +AM EA R G HDFT+F S I D V+ ++ +VK
Sbjct: 123 DVFRRHYCAWHPYSLHISAMNEALRLLHGTHDFTSF--CSAKTSIEDRVRTMYRAEVKAD 180
Query: 213 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPH 272
G +L+ GSGFLY VR +V +L+IG+ P + +LA++DR+ P
Sbjct: 181 GPMLEFRFVGSGFLYNMVRIIVGTVLEIGQGKRSPADISTLLAAKDRRLAGPTA---PAE 237
Query: 273 GLCLVSINYNESHLL 287
GL L + Y + L+
Sbjct: 238 GLYLWRVYYEDECLV 252
>gb|AAP07243.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579]
gi|30018411|ref|NP_830042.1| tRNA pseudouridine synthase
A [Bacillus cereus ATCC 14579]
Length = 252
Score = 167 bits (423), Expect = 4e-40
Identities = 100/258 (38%), Positives = 149/258 (56%), Gaps = 10/258 (3%)
Query: 26 NQDGYKWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGAS-RTDA 84
N++ + + ++YDG + G+Q Q + TVQ +EKAL KL + +L V AS RTD+
Sbjct: 3 NREMDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKAL---QKLHKGELVRVQASGRTDS 59
Query: 85 GVHAWGQVAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHY 144
VHA GQV HF TP + + +A LN +LP DI +R++ + EFHAR+ V+ K Y Y
Sbjct: 60 TVHAKGQVIHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRY 118
Query: 145 KIYSDTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHI 204
++ D F+R++ Y Y L ++R+A YFIG HDFT+F +A + + D V+ I
Sbjct: 119 RVLLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTI 176
Query: 205 FPIDVKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAK 264
+ I++ E + G+GFLY VR +V LL +G+ PD +P ILA ++R+ K
Sbjct: 177 YEIELIEQDDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK 236
Query: 265 YCYYLPPHGLCLVSINYN 282
P HGL L +NYN
Sbjct: 237 MA---PGHGLYLWEVNYN 251
>sp|Q814C2|TRUA1_BACCR tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1)
Length = 247
Score = 166 bits (421), Expect = 6e-40
Identities = 99/248 (39%), Positives = 144/248 (57%), Gaps = 10/248 (4%)
Query: 36 LSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGAS-RTDAGVHAWGQVAH 94
++YDG + G+Q Q + TVQ +EKAL KL + +L V AS RTD+ VHA GQV H
Sbjct: 8 VAYDGMHFCGYQIQPNHRTVQQEIEKAL---QKLHKGELVRVQASGRTDSTVHAKGQVIH 64
Query: 95 FLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDP 154
F TP + + +A LN +LP DI +R++ + EFHAR+ V+ K Y Y++ D
Sbjct: 65 FDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADV 123
Query: 155 FQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMGA 214
F+R++ Y Y L ++R+A YFIG HDFT+F +A + + D V+ I+ I++ E
Sbjct: 124 FRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQDD 181
Query: 215 LLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGL 274
+ G+GFLY VR +V LL +G+ PD +P ILA ++R+ K P HGL
Sbjct: 182 EIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMA---PGHGL 238
Query: 275 CLVSINYN 282
L +NYN
Sbjct: 239 YLWEVNYN 246
>sp|Q9PJT0|TRUA_CHLMU tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I)
Length = 267
Score = 166 bits (421), Expect = 6e-40
Identities = 94/250 (37%), Positives = 142/250 (56%), Gaps = 10/250 (4%)
Query: 34 LLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVA 93
L ++Y GT Y+GWQYQ + ++Q +E L K+ R + ++ + RTDAGVHA GQVA
Sbjct: 7 LRIAYQGTAYSGWQYQPNALSIQEVLETLL---QKISRTRISVIASGRTDAGVHAQGQVA 63
Query: 94 HFLTPFN--YDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTI 151
HF P + + + + LN LLP DI +R++ + +FH+RFS +K YHY +
Sbjct: 64 HFCCPDHPHFSDPGQIKKMLNALLPHDIVIRDVIATNEDFHSRFSAITKEYHYTLSLLPK 123
Query: 152 MDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKE 211
P R F + +KL +MREAA+Y +G HDF +F N V+ ++ +D+ E
Sbjct: 124 PLPHHRLFCFSPRHKLCLESMREAAKYLVGTHDFASFANLGRE--YSSTVRTLYALDLLE 181
Query: 212 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPP 271
L+ + +G+GFLY+ VRN+V LL IGK PP+ H+L ++K+ K PP
Sbjct: 182 QEHLVTVICKGNGFLYKMVRNIVGALLDIGKGKYPPE---HLLEMLEKKDRKKGPPSAPP 238
Query: 272 HGLCLVSINY 281
+GL L + Y
Sbjct: 239 YGLSLHHVCY 248
>gb|AAO36369.1| tRNA pseudouridine synthase A [Clostridium tetani E88]
gi|42559805|sp|Q893H3|TRUA1_CLOTE tRNA pseudouridine
synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1)
gi|28211488|ref|NP_782432.1| tRNA pseudouridine synthase
A [Clostridium tetani E88]
Length = 245
Score = 166 bits (420), Expect = 8e-40
Identities = 96/250 (38%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 33 RLLLSYDGTRYAGWQYQESPP-TVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQ 91
+++L YDGTRY GWQ Q+ T+Q +E L +K+ +D+Q++G RTDAGVHA
Sbjct: 5 KMILEYDGTRYKGWQKQKKDVLTIQDKIETVL---SKMTGEDIQVIGCGRTDAGVHAENY 61
Query: 92 VAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTI 151
VA+F T ++ +D + L LP DI V+ + S FHAR++VKSK Y Y+I ++
Sbjct: 62 VANFHTNCDF-TVDYMLDYLYEFLPEDIVVKTMKDTSERFHARYNVKSKTYVYRINNNKF 120
Query: 152 MDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKE 211
F + +AYH+ KLN +AM++AA + IG HDF +F N + ++ I I++ E
Sbjct: 121 RSVFNKKYAYHDNEKLNISAMKDAAEFLIGTHDFKSFTRLKSNSK--STIRAIKYINITE 178
Query: 212 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPP 271
++ +EV G+GFL VR + LL++GKE P + +L + K+ A LP
Sbjct: 179 NQGIISIEVNGNGFLLNMVRIVAGALLEVGKENIKPIDIEKML---NEKKRADASLILPA 235
Query: 272 HGLCLVSINY 281
GLCL I Y
Sbjct: 236 KGLCLKDIQY 245
>ref|ZP_00390546.1| COG0101: Pseudouridylate synthase [Bacillus anthracis str. A2012]
Length = 257
Score = 166 bits (419), Expect = 1e-39
Identities = 100/263 (38%), Positives = 150/263 (57%), Gaps = 10/263 (3%)
Query: 21 SLLSPNQDGYKWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGAS 80
+++ N++ + + ++YDG + G+Q Q TVQ +EKAL KL + +L V AS
Sbjct: 3 AIVMENREMDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKAL---QKLHKGELVRVQAS 59
Query: 81 -RTDAGVHAWGQVAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKS 139
RTD+ VHA GQV HF TP + + +A LN +LP DI + ++ + EFHAR+ V+
Sbjct: 60 GRTDSTVHAKGQVIHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVER 118
Query: 140 KIYHYKIYSDTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPD 199
K Y Y++ D F+R++ Y Y L ++R+A YFIG HDFT+F +A + + D
Sbjct: 119 KEYRYRVLVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKK--D 176
Query: 200 PVKHIFPIDVKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDR 259
V+ I+ I++ E L G+GFLY VR +V LL +G+ PD +P ILA ++R
Sbjct: 177 KVRTIYEIELIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNR 236
Query: 260 KELAKYCYYLPPHGLCLVSINYN 282
+ K P HGL L +NYN
Sbjct: 237 QFAGKMA---PGHGLYLWQVNYN 256
>sp|Q73F64|TRUA1_BACC1 tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1)
gi|42779223|ref|NP_976470.1| tRNA pseudouridine synthase
A [Bacillus cereus ATCC 10987]
gi|42735138|gb|AAS39078.1| tRNA pseudouridine synthase A
[Bacillus cereus ATCC 10987]
Length = 247
Score = 165 bits (418), Expect = 1e-39
Identities = 100/248 (40%), Positives = 142/248 (56%), Gaps = 10/248 (4%)
Query: 36 LSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGAS-RTDAGVHAWGQVAH 94
++YDG + G+Q Q TVQ +EKAL KL + +L V AS RTD+ VHA GQV H
Sbjct: 8 VAYDGMHFCGYQIQPQHRTVQQEIEKAL---QKLHKGELVRVQASGRTDSTVHAKGQVIH 64
Query: 95 FLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDP 154
F TP + + + ALN +LP DI + ++ + EFHAR+ V+ K Y Y++ D
Sbjct: 65 FDTPLSLEEWQW-NNALNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTADV 123
Query: 155 FQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMGA 214
F+R++ Y Y L A+R+A YFIG HDFT+F +A + + D V+ I+ I++ E
Sbjct: 124 FRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQDD 181
Query: 215 LLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGL 274
L G+GFLY VR +V LL +G+ PD +P ILA ++R+ K P HGL
Sbjct: 182 ELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMA---PGHGL 238
Query: 275 CLVSINYN 282
L +NYN
Sbjct: 239 YLWQVNYN 246
>emb|CAH63617.1| putative tRNA pseudouridine synthase a [Chlamydophila abortus
S26/3] gi|62184804|ref|YP_219589.1| putative tRNA
pseudouridine synthase a [Chlamydophila abortus S26/3]
Length = 268
Score = 165 bits (417), Expect = 2e-39
Identities = 91/262 (34%), Positives = 142/262 (53%), Gaps = 18/262 (6%)
Query: 34 LLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVA 93
+LL+Y GT YAGWQ Q + ++Q +E +L + K + + + RTDA VHA+GQVA
Sbjct: 6 ILLAYQGTAYAGWQRQPNDLSIQEVIENSLAQVVG---KRIPVTSSGRTDAEVHAFGQVA 62
Query: 94 HFLTPFN--YDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTI 151
HF P + + S+ LN LLP DI +R++ +FH+RFS +K Y Y +
Sbjct: 63 HFSQPDHPQFSQASSIKKMLNALLPKDIVIRDVVLGDDKFHSRFSAIAKEYRYVLTRSPK 122
Query: 152 MDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKE 211
P++R+FAY+ + L + M+E A+Y +G HDF +F A+H ++ +F +D+ +
Sbjct: 123 PLPWERYFAYYPRHHLKTDLMQEGAQYLLGTHDFASF--ANHGRDYTSTIRTLFNLDIVD 180
Query: 212 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKE---------- 261
G + + G+GFLY+ VRN+V LL I + PP+ + IL ++R++
Sbjct: 181 HGETVTIICRGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILMQKNRRQGPPAAPSHAL 240
Query: 262 -LAKYCYYLPPHGLCLVSINYN 282
L CY P H C N N
Sbjct: 241 SLYHVCYPKPYHWFCTPECNIN 262
>ref|ZP_00240905.1| tRNA pseudouridine synthase A [Bacillus cereus G9241]
gi|47553078|gb|EAL11478.1| tRNA pseudouridine synthase A
[Bacillus cereus G9241]
Length = 247
Score = 164 bits (416), Expect = 2e-39
Identities = 100/248 (40%), Positives = 142/248 (56%), Gaps = 10/248 (4%)
Query: 36 LSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGAS-RTDAGVHAWGQVAH 94
++YDG + G+Q Q TVQ +EKAL KL + +L V AS RTD+ VHA GQV H
Sbjct: 8 VAYDGMHFCGYQIQPQHRTVQQEIEKAL---QKLHKGELVRVQASGRTDSTVHAKGQVIH 64
Query: 95 FLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDP 154
F TP + + +A LN +LP DI + ++ + EFHAR+ V+ K Y Y++ D
Sbjct: 65 FDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTADV 123
Query: 155 FQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMGA 214
F+R++ Y Y L ++R+A YFIG HDFT+F +A + + D V+ I+ I++ E
Sbjct: 124 FRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQDD 181
Query: 215 LLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGL 274
L G+GFLY VR +V LL IG+ PD +P ILA ++R+ K P HGL
Sbjct: 182 ELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMA---PGHGL 238
Query: 275 CLVSINYN 282
L +NYN
Sbjct: 239 YLWQVNYN 246
>ref|YP_034493.1| tRNA pseudouridine synthase A (pseudouridylate synthase) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|49183176|ref|YP_026428.1| tRNA pseudouridine synthase
A [Bacillus anthracis str. Sterne]
gi|49328278|gb|AAT58924.1| tRNA pseudouridine synthase A
(pseudouridylate synthase) [Bacillus thuringiensis
serovar konkukian str. 97-27] gi|49177103|gb|AAT52479.1|
tRNA pseudouridine synthase A [Bacillus anthracis str.
Sterne] gi|52145077|ref|YP_081752.1|
tRNA-pseudouridylate synthase I [Bacillus cereus E33L]
gi|62901432|sp|Q6I4Q2|TRUA1_BACAN tRNA pseudouridine
synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1)
gi|62901430|sp|Q6HPM7|TRUA1_BACHK tRNA pseudouridine
synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1)
gi|62901423|sp|Q63H59|TRUA1_BACCZ tRNA pseudouridine
synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1) gi|51978546|gb|AAU20096.1|
tRNA-pseudouridylate synthase I [Bacillus cereus E33L]
Length = 247
Score = 164 bits (415), Expect = 3e-39
Identities = 99/248 (39%), Positives = 142/248 (56%), Gaps = 10/248 (4%)
Query: 36 LSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGAS-RTDAGVHAWGQVAH 94
++YDG + G+Q Q TVQ +EKAL KL + +L V AS RTD+ VHA GQV H
Sbjct: 8 VAYDGMHFCGYQIQPQHRTVQQEIEKAL---QKLHKGELVRVQASGRTDSTVHAKGQVIH 64
Query: 95 FLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDP 154
F TP + + +A LN +LP DI + ++ + EFHAR+ V+ K Y Y++ D
Sbjct: 65 FDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTADV 123
Query: 155 FQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMGA 214
F+R++ Y Y L ++R+A YFIG HDFT+F +A + + D V+ I+ I++ E
Sbjct: 124 FRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQDD 181
Query: 215 LLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGL 274
L G+GFLY VR +V LL +G+ PD +P ILA ++R+ K P HGL
Sbjct: 182 ELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMA---PGHGL 238
Query: 275 CLVSINYN 282
L +NYN
Sbjct: 239 YLWQVNYN 246
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,416,879
Number of Sequences: 2540612
Number of extensions: 22503513
Number of successful extensions: 49827
Number of sequences better than 10.0: 471
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 48233
Number of HSP's gapped (non-prelim): 530
length of query: 310
length of database: 863,360,394
effective HSP length: 127
effective length of query: 183
effective length of database: 540,702,670
effective search space: 98948588610
effective search space used: 98948588610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)
Medicago: description of AC146862.17