BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146856.2 + phase: 0
(88 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO23078.1| polyprotein [Glycine max] 55 3e-07
gb|AAL75999.1| putative polyprotein [Zea mays] 53 2e-06
emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar... 48 7e-05
ref|XP_474398.1| OSJNBa0032F06.19 [Oryza sativa (japonica cultiv... 47 1e-04
emb|CAE03018.3| OSJNBa0091D06.3 [Oryza sativa (japonica cultivar... 46 2e-04
gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cul... 45 4e-04
ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cu... 45 4e-04
ref|XP_472450.1| OSJNBb0108J11.11 [Oryza sativa (japonica cultiv... 45 6e-04
gb|AAC69378.1| putative retroelement pol polyprotein [Arabidopsi... 44 8e-04
gb|AAP52160.1| putative retroelement [Oryza sativa (japonica cul... 44 8e-04
gb|AAL68644.1| polyprotein [Oryza sativa (japonica cultivar-group)] 44 8e-04
gb|AAP53511.1| Similar to 22 kDa kafirin cluster;Ty3-Gypsytype [... 44 0.001
emb|CAE02564.2| OSJNBa0006M15.7 [Oryza sativa (japonica cultivar... 44 0.001
gb|AAO37835.1| hypothetical protein, 5'-partial [Oryza sativa (j... 43 0.002
ref|NP_909553.1| putative polyprotein [Oryza sativa] gi|14018097... 43 0.002
ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|1545160... 43 0.002
gb|AAT85771.1| hypothetical protein [Oryza sativa (japonica cult... 43 0.002
gb|AAT77831.1| putative pol polyprotein [Oryza sativa (japonica ... 43 0.002
gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japon... 43 0.002
gb|AAX96796.1| retrotransposon protein, putative, unclassified [... 43 0.002
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 55.5 bits (132), Expect = 3e-07
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 9/87 (10%)
Query: 4 QPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPILEDKVV-EGDG 62
QP+K+L +R + Q+LVQW+ +EATWED ++++ S+P+ LEDKVV +G+G
Sbjct: 1442 QPVKILASRIIIRGHNQIEQILVQWENGLQDEATWEDIEDIKASYPTFNLEDKVVFKGEG 1501
Query: 63 NDTYSLD--------SKHATEPGIRNE 81
N T + ++ ++E G+ N+
Sbjct: 1502 NVTNGMSRGEKVNNTAESSSERGLHNK 1528
>gb|AAL75999.1| putative polyprotein [Zea mays]
Length = 2749
Score = 52.8 bits (125), Expect = 2e-06
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 5 PLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPILEDKVVEGDGND 64
PLKVL + R I LVQW+GLSPEEATWE D+ R +P LED++ G D
Sbjct: 1793 PLKVLRAQQRRGTWHI----LVQWQGLSPEEATWEPLDDFRGLYPDFQLEDELFAHAGRD 1848
Query: 65 TYS 67
+S
Sbjct: 1849 AWS 1851
>emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar-group)]
gi|50930431|ref|XP_474743.1| OSJNBa0059D20.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1463
Score = 47.8 bits (112), Expect = 7e-05
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 15 RTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPILEDKVVEGDGND 64
R +G++ Q LVQWKG SP ATWED + +R +P+ LED++ +G D
Sbjct: 1365 RLARGVR-QALVQWKGESPASATWEDIEVLRAKYPALQLEDELSLEEGGD 1413
>ref|XP_474398.1| OSJNBa0032F06.19 [Oryza sativa (japonica cultivar-group)]
gi|38345562|emb|CAE03436.2| OSJNBa0032F06.19 [Oryza
sativa (japonica cultivar-group)]
Length = 1575
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/67 (35%), Positives = 37/67 (54%), Gaps = 1/67 (1%)
Query: 5 PLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWP-SPILEDKVVEGDGN 63
P+K+L RS+R + Q+L++W G+S TWE DEM+ +P +P +G N
Sbjct: 1478 PIKILDHRSIRRGSKMIKQVLIRWSGVSSSADTWESLDEMQAKFPAAPAWGQAETQGGRN 1537
Query: 64 DTYSLDS 70
T S+ S
Sbjct: 1538 VTASIQS 1544
>emb|CAE03018.3| OSJNBa0091D06.3 [Oryza sativa (japonica cultivar-group)]
gi|50926772|ref|XP_473325.1| OSJNBa0091D06.3 [Oryza
sativa (japonica cultivar-group)]
Length = 753
Score = 46.2 bits (108), Expect = 2e-04
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 5 PLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPI 52
PL++L R + Q+L+QW PE+ATWED D++R+ +P+ +
Sbjct: 395 PLRILDRRLTKRGNSAVAQVLIQWSASVPEDATWEDLDDLRSRFPAAL 442
>gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532578|ref|NP_920591.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15217201|gb|AAK92545.1| Putative retroelement [Oryza
sativa]
Length = 1476
Score = 45.4 bits (106), Expect = 4e-04
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 1 MDHQPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPILEDKVVEG 60
+D +P +V TRS R +G++ Q+LV WKG S ATWED D + +P+ LED++
Sbjct: 1375 IDPEPERV--TRS-RLARGVR-QVLVHWKGESAASATWEDLDTFKERYPAFQLEDELALE 1430
Query: 61 DGND 64
+G D
Sbjct: 1431 EGRD 1434
>ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1382
Score = 45.4 bits (106), Expect = 4e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 4 QPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPILEDKVVEGDGN 63
+P + + TR R G++ Q+L+QWKG SP ATWED D +P L D++ +G
Sbjct: 1292 EPERAVKTRLAR---GVR-QLLIQWKGESPASATWEDADAFIAKYPDFQLGDELALDEGG 1347
Query: 64 D 64
D
Sbjct: 1348 D 1348
>ref|XP_472450.1| OSJNBb0108J11.11 [Oryza sativa (japonica cultivar-group)]
gi|38605839|emb|CAE02919.3| OSJNBb0108J11.11 [Oryza
sativa (japonica cultivar-group)]
Length = 815
Score = 44.7 bits (104), Expect = 6e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 5 PLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPILEDKVVEGDGND 64
PL+VL R + + Q+L++W G P TWE+E E+R +P+ +V G D
Sbjct: 731 PLQVLDRRFVHKGSKMVEQVLIKWSGGEPAAVTWENEQELRRRFPTTTTWGQVATQGGGD 790
Query: 65 TYSLDSKHATEPGIRNE 81
+ A+E G++ E
Sbjct: 791 VTA-----ASEQGVQPE 802
>gb|AAC69378.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411577|pir||F84519 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 945
Score = 44.3 bits (103), Expect = 8e-04
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 4 QPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPI--LEDKV 57
QP VL R + +LVQW+GL E+ATWE+ D++ S+P + LEDKV
Sbjct: 888 QPTAVLEVRWRSQDKKRVADLLVQWEGLHIEDATWEEYDQLAASFPEFVLNLEDKV 943
>gb|AAP52160.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531142|ref|NP_919873.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22725911|gb|AAN04921.1| Putative retroelement [Oryza
sativa]
Length = 1786
Score = 44.3 bits (103), Expect = 8e-04
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 4 QPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWP 49
+P+K+L TR RT + VQW + EEATWE EDE++ + P
Sbjct: 1726 RPVKILDTRERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHP 1771
>gb|AAL68644.1| polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 933
Score = 44.3 bits (103), Expect = 8e-04
Identities = 19/48 (39%), Positives = 30/48 (61%)
Query: 5 PLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPI 52
P+++L TR + + Q+LV W L EATWEDE+E++ +PS +
Sbjct: 828 PVQILDTRIQKKGNKVVRQILVCWSNLPAVEATWEDEEELKQRFPSAL 875
>gb|AAP53511.1| Similar to 22 kDa kafirin cluster;Ty3-Gypsytype [Oryza sativa
(japonica cultivar-group)] gi|37533844|ref|NP_921224.1|
Similar to 22 kDa kafirin cluster;Ty3-Gypsytype [Oryza
sativa (japonica cultivar-group)]
gi|13129459|gb|AAK13117.1| Similar to 22 kDa kafirin
cluster;Ty3-Gypsytype [Oryza sativa]
Length = 169
Score = 43.9 bits (102), Expect = 0.001
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 4 QPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWP 49
+P+K+L T RT + VQW + EEATWE EDE++T+ P
Sbjct: 109 RPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKTAHP 154
>emb|CAE02564.2| OSJNBa0006M15.7 [Oryza sativa (japonica cultivar-group)]
gi|32489198|emb|CAE04383.1| OSJNBa0027G07.25 [Oryza
sativa (japonica cultivar-group)]
gi|50924708|ref|XP_472709.1| OSJNBa0027G07.25 [Oryza
sativa (japonica cultivar-group)]
Length = 1807
Score = 43.5 bits (101), Expect = 0.001
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 4 QPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWP 49
+P+K+L T RT + VQW + EEATWE EDE++ ++P
Sbjct: 1747 RPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAYP 1792
>gb|AAO37835.1| hypothetical protein, 5'-partial [Oryza sativa (japonica
cultivar-group)]
Length = 264
Score = 43.1 bits (100), Expect = 0.002
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 4 QPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWP 49
+P+K+L T RT + VQW + EEATWE EDEM+ + P
Sbjct: 204 RPVKILDTMERRTRNQVIRFCKVQWSNHAEEEATWEREDEMKAAHP 249
>ref|NP_909553.1| putative polyprotein [Oryza sativa] gi|14018097|gb|AAK52160.1|
putative polyprotein [Oryza sativa]
Length = 1475
Score = 43.1 bits (100), Expect = 0.002
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 4 QPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWP 49
+P+K+L T RT + VQW + EEATWE EDEM+ + P
Sbjct: 1415 RPVKILDTMERRTRNQVIRFCKVQWSNHAEEEATWEREDEMKAAHP 1460
>ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|15451607|gb|AAK98731.1|
Putative retroelement [Oryza sativa]
Length = 1461
Score = 43.1 bits (100), Expect = 0.002
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 4 QPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPILEDKVVEGDGN 63
+P +V+ R R G++ Q+LVQWKG S ATWED + +P+ LED++ G
Sbjct: 1364 EPERVIKARLAR---GVR-QVLVQWKGTSAASATWEDREPFFARYPALQLEDELPLDGGG 1419
Query: 64 D 64
D
Sbjct: 1420 D 1420
>gb|AAT85771.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1169
Score = 43.1 bits (100), Expect = 0.002
Identities = 18/48 (37%), Positives = 29/48 (59%)
Query: 2 DHQPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWP 49
+ +P+K+L T RT + VQW + EEATWE +DE++ ++P
Sbjct: 1107 EERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWERQDELKAAYP 1154
>gb|AAT77831.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 922
Score = 43.1 bits (100), Expect = 0.002
Identities = 18/48 (37%), Positives = 29/48 (59%)
Query: 2 DHQPLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWP 49
+ +P+K+L T RT + VQW + EEATWE +DE++ ++P
Sbjct: 860 EERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWERQDELKAAYP 907
>gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532304|ref|NP_920454.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|20270059|gb|AAM18147.1| Putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|18958673|gb|AAL82656.1| retrotransposon protein,
putative, unclassified [Oryza sativa (japonica
cultivar-group)]
Length = 1338
Score = 42.7 bits (99), Expect = 0.002
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 5 PLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPILEDKVVEGDGND 64
P +VL R R G++ Q+LVQW+GL +WED D+ R +PS L D+++ G D
Sbjct: 1254 PRQVLRARLAR---GVR-QLLVQWEGLPASATSWEDLDDFRNRYPSFQLADELLIEGGRD 1309
>gb|AAX96796.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 429
Score = 42.7 bits (99), Expect = 0.002
Identities = 22/60 (36%), Positives = 36/60 (59%), Gaps = 2/60 (3%)
Query: 5 PLKVLGTRSLRTPQGIKTQMLVQWKGLSPEEATWEDEDEMRTSWPSPILEDKVVEGDGND 64
P+ V R R +G+ ++L+ W+G + EA+WE+E E R +P+ LED++ DG D
Sbjct: 345 PVPVKAVRG-RIARGV-WEVLIHWEGKAASEASWENEAEFRRRYPAFQLEDELFPKDGRD 402
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.307 0.128 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,166,222
Number of Sequences: 2540612
Number of extensions: 6799551
Number of successful extensions: 11558
Number of sequences better than 10.0: 478
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 11091
Number of HSP's gapped (non-prelim): 486
length of query: 88
length of database: 863,360,394
effective HSP length: 64
effective length of query: 24
effective length of database: 700,761,226
effective search space: 16818269424
effective search space used: 16818269424
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146856.2