BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146855.1 + phase: 0 /pseudo
(1356 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 249 6e-64
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 243 2e-62
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 238 1e-60
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 235 7e-60
gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (jap... 231 1e-58
gb|AAV43905.1| hypothetical protein [Oryza sativa (japonica cult... 229 6e-58
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 225 7e-57
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 218 9e-55
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 216 4e-54
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 211 1e-52
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 211 2e-52
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 209 7e-52
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 206 6e-51
emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar... 204 1e-50
emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultiva... 204 1e-50
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 204 2e-50
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 204 2e-50
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 197 2e-48
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 197 2e-48
dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like ... 196 3e-48
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 249 bits (635), Expect = 6e-64
Identities = 141/467 (30%), Positives = 241/467 (51%), Gaps = 14/467 (2%)
Query: 1 MNVIAWNCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVD 60
M +++WNC+G+GN V ++++ +Y P+++ L ET N + + +GF +V+
Sbjct: 1 MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60
Query: 61 CIGRSGGIAVLWRNSAHCSILNYSQHFINMSI--QDPVKGPWRLTAFYGYPDHGRRRDSW 118
IG+SGG+A++W++S +L + I+ + QD + LT YG P R + W
Sbjct: 61 PIGKSGGLALMWKDSVQIKVLQSDKRLIDALLIWQDK---EFYLTCIYGEPVQAERGELW 117
Query: 119 ELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGY 178
E L L PW + GDFN+ + PS+K GGP R F++ ++ C L ++ +GY
Sbjct: 118 ERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGY 177
Query: 179 QFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPPPWRA 238
QF+W+ + + R+DR + W+ELFP A L SDH+PL+ L WR
Sbjct: 178 QFSWYGN-RNDELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWR- 235
Query: 239 PHNSFRFNNSWLIEPELAHLVKDNWSYYPSSN---IVTKLSYCIEDMKYWSKANHPHFNQ 295
F+++ W+ L+ + WS + ++ K++ C ++ W + + P
Sbjct: 236 KWAGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMMEKIASCRREISKWKRVSKPSSAV 295
Query: 296 RKQQLKNQIDVMRNTSDASVDPR-LIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSK 354
R Q+L+ ++D T D R L L+ L+ E+ +W+++S+I W+++GD+N+K
Sbjct: 296 RIQELQFKLDAA--TKQIPFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDRNTK 353
Query: 355 FFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAIN-GDQQPVITRIQ 413
+FH +RR +N I KL G TS +D+ YF LF + + G + +
Sbjct: 354 YFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLT 413
Query: 414 ARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFF 460
V++ N L P + +E + A FS++ K PGPDG+N YQ F+
Sbjct: 414 PLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFW 460
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 243 bits (621), Expect = 2e-62
Identities = 146/476 (30%), Positives = 242/476 (50%), Gaps = 17/476 (3%)
Query: 3 VIAW--NCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVD 60
++ W NCRGLG+ V ++ LV+ +P +V L ET + + L +++GF F+V
Sbjct: 6 LVTWGRNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAVS 65
Query: 61 CIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWEL 120
C G SGG+A+ W + S+ ++ HFI++ + PWR++ YG P R W L
Sbjct: 66 CEGLSGGLALFWTTAYTVSLRGFNSHFIDVLVSTEELPPWRISFVYGEPKRELRHFFWNL 125
Query: 121 LRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQF 180
LR LH Q PW GDFN+ L + G +R ++ F+ + DC LIDL G +F
Sbjct: 126 LRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKF 185
Query: 181 TWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQL---DPPPWR 237
TW + + R+DRA+ + F ++ ++ SDH + + L + R
Sbjct: 186 TWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQRR 245
Query: 238 AP-HNSFRFNNSWLIEPELAHLVKDNWSYYPSS-----NIVTKLSYCIEDMKYWSKANHP 291
P FRF +WL + +V+++W + + + L +K WSKA+
Sbjct: 246 IPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWSKASFG 305
Query: 292 HFNQRKQQLKNQIDVMRNTSDASV---DPRLIELQNSLANLILQEDVYWRQRSKIFWLKD 348
++ +++ ++ +R + V + +LIE Q L L +E++ RQRS++ WL++
Sbjct: 306 SVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQ--LCELFEKEEIMARQRSRVDWLRE 363
Query: 349 GDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAINGD-QQP 407
GD+N+ FFH AS+RRR N I +L +G SQ+ + ++ LF + D +
Sbjct: 364 GDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSEPCDSMEE 423
Query: 408 VITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFFGMI 463
V+ I +V + N L K ++ +E K A+F M S K+PGPDG FYQ +G++
Sbjct: 424 VLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGIL 479
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 238 bits (606), Expect = 1e-60
Identities = 137/441 (31%), Positives = 230/441 (52%), Gaps = 11/441 (2%)
Query: 23 LVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGIAVLWRNSAHCSILN 82
L R+Y DI+ L+ETL +K+ L Y +GF + GRSGG+A++W+N+ S+++
Sbjct: 404 LFRMYNYDILFLVETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLIS 463
Query: 83 YSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWELLRSLHSQSDDPWCIIGDFNDHL 142
+ I+ + K + L+ YG+P R W+ L + + W ++GDFN+ L
Sbjct: 464 QDERLIDSHVTFNNKS-FYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEIL 522
Query: 143 SPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCT 202
S ++K GGP R W R F+ VS C++ D+ G +F+W T H + +DR
Sbjct: 523 SNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERHT-HTVKCCLDRVFIN 581
Query: 203 APWLELFPHASLQTLVAPMSDHTPLLLQLDPP-PWRAPHNSFRFNNSWLIEPELAHLVKD 261
+ W FP+A ++ L SDH P+L+ + P R+ FRF+N + P +V+
Sbjct: 582 SAWTATFPYAEIEFLDFTGSDHKPVLVHFNESFPRRS--KLFRFDNRLIDIPTFKRIVQT 639
Query: 262 NWSYYPSSN---IVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPR 318
+W +S I ++S C + M A++ + QR ++L++ ++ S VD +
Sbjct: 640 SWRTNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLN-RAMESTRRVDRQ 698
Query: 319 LI-ELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNG 377
LI +LQ SLA E++YW+Q+S+ W+K+GD+N+ +FH +R +N ++ + G
Sbjct: 699 LIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQG 758
Query: 378 FWLTSQDDMSAHIHDYFSGLFQAINGDQQPV-ITRIQARVTENDNATLTKPFSIDEFKEA 436
T ++ H D+F+ +F P+ ++ VT N LTK FS E +A
Sbjct: 759 RMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDA 818
Query: 437 VFSMHSDKSPGPDGLNPGFYQ 457
+ + DK+PGPDGL FY+
Sbjct: 819 ICQIGDDKAPGPDGLTARFYK 839
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 235 bits (600), Expect = 7e-60
Identities = 140/470 (29%), Positives = 238/470 (49%), Gaps = 9/470 (1%)
Query: 1 MNVIAWNCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVD 60
M+ +AWNCRGLGN V ++ L++ +V L ET + K+S L+ + F V
Sbjct: 636 MSCLAWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKLAFRGFVGVS 695
Query: 61 CIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQ-DPVKGPWRLTAFYGYPDHGRRRDSWE 119
G+SGG+A+ W S + + ++ +I+ ++ P + W +T YG P R W
Sbjct: 696 SEGKSGGLALYWDESVSVDVKDINKRYIDAYVRLSPDEPQWHITFVYGEPRVENRHRMWS 755
Query: 120 LLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQ 179
LLR++ S PW +IGDFN+ L + R ++ F++A+ DC+L DL G
Sbjct: 756 LLRTIRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNFRDALYDCDLQDLGFKGVP 815
Query: 180 FTWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPPPWRAP 239
T+ + R+DRA+ W +LFP A + LV+P SDH+P+LL+ P
Sbjct: 816 HTYDNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSPILLEFIVKDTTRP 875
Query: 240 HNS-FRFNNSWLIEPELAHLVKDNWSYY----PSSNIVTKLSYCIEDMKYWSKANHPHFN 294
+ W EPE ++++ W +I L + ++ WSK +
Sbjct: 876 RQKCLHYEIVWEREPESVQVIEEAWINAGVKTDLGDINIALGRVMSALRSWSKTKVKNVG 935
Query: 295 QRKQQLKNQIDVMRNTSDASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSK 354
+ ++ + +++ + ++ A R + + + ++ +E++ W QRS++ WLK+GD+N++
Sbjct: 936 KELEKARKKLEDLIASNAARSSIR--QATDHMNEMLYREEMLWLQRSRVNWLKEGDRNTR 993
Query: 355 FFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAINGDQQPVITRI-Q 413
FFH A R +KN ISKLR NG ++ + +YF G+++A +TR+ Q
Sbjct: 994 FFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVYKADPSLNPESVTRLFQ 1053
Query: 414 ARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFFGMI 463
+VT+ N L + F +E +A+F + KSP PDG FYQ +G +
Sbjct: 1054 EKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTL 1103
>gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918647|ref|XP_469720.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1833
Score = 231 bits (590), Expect = 1e-58
Identities = 129/443 (29%), Positives = 227/443 (51%), Gaps = 8/443 (1%)
Query: 26 VYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQ 85
+++P IV L ET + + IG F+V+ +G+ GG+A+ W S + + +Y+
Sbjct: 9 IHRPKIVFLAETRQDQYMVQN---RIGLRRCFTVNGVGKGGGLALFWDESMNVVLKSYNS 65
Query: 86 HFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPS 145
I++ I + WR T YG P R W LLR + S S DPW +IGDFN+ + +
Sbjct: 66 RHIDVLITELDCCTWRATFVYGEPRAQDRHLMWSLLRRIRSNSGDPWLMIGDFNEAMWQT 125
Query: 146 DKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPW 205
+ + R +R F+E +S+C+L D+ G +T+ + R+DR + + W
Sbjct: 126 EHKSHRKRSESQMRDFREVLSECDLHDIGFQGAPWTFCNMQREGRNVKVRLDRGVASPAW 185
Query: 206 LELFPHASLQTLVAPMSDHTPLLLQLDPPPWRAPHNSFRFNNSWLIEPELAHLVKDNWSY 265
FP A + L P SDH PLLL+ + P R+ W E L ++++ W+
Sbjct: 186 SSRFPQAVITHLTTPSSDHAPLLLEREETTLARPMKIMRYEEVWERESSLPEVIQEAWTM 245
Query: 266 YPSS----NIVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPRLIE 321
+ +I K+ + + WSK + ++ + L+ ++ +RN D +
Sbjct: 246 GADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKLGELRNIGLLDTDNEVHS 305
Query: 322 LQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLT 381
++ L ++ +E+++W+QRS+I WLK+GD N+++FHL AS R +KN I KL+ +G
Sbjct: 306 VKKELEEMLHREEIWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIKKLKKNDGSTTM 365
Query: 382 SQDDMSAHIHDYFSGLF-QAINGDQQPVITRIQARVTENDNATLTKPFSIDEFKEAVFSM 440
++ +M +F L+ + N + ++ +++E NA L KPF+ +E +A+F +
Sbjct: 366 NKKEMKEINRSFFQQLYTKDDNLNPVNLLNMFHEKISEQMNADLIKPFTNEEISDALFQI 425
Query: 441 HSDKSPGPDGLNPGFYQFFFGMI 463
K+PGPDG F Q +G++
Sbjct: 426 GPLKAPGPDGFPARFLQRNWGLL 448
>gb|AAV43905.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|55167960|gb|AAV43829.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 796
Score = 229 bits (583), Expect = 6e-58
Identities = 131/404 (32%), Positives = 215/404 (52%), Gaps = 12/404 (2%)
Query: 63 GRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWELLR 122
G+ GGIA+ W S + +Y+ I++ I + WR T YG P R W LLR
Sbjct: 391 GKGGGIALFWDESIKVELKSYNVRHIDVLITESDGERWRGTFVYGEPRSQDRLKMWTLLR 450
Query: 123 SLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTW 182
+ S + PW +IGDFN+ + S+ R ++ F+EA++DC+L DL +G +T+
Sbjct: 451 RIKSNAALPWLMIGDFNEAMWQSEHWSRVRRSERQMKDFREALADCDLHDLGFHGVPWTY 510
Query: 183 FKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQ-LDPPPWRAPHN 241
+ ++ R+DRA+ + WL F AS+ LV P SDH PLLL+ L+ HN
Sbjct: 511 DNNQRGANNVRVRLDRAVASPAWLGRFRQASITHLVTPSSDHVPLLLERLEE---ELVHN 567
Query: 242 SF---RFNNSWLIEPELAHLVKDNWS----YYPSSNIVTKLSYCIEDMKYWSKANHPHFN 294
S R+ W E +V+ W + TK++Y ++++ WSK+ +
Sbjct: 568 SVKISRYEAIWEREESFDSVVQQAWGEGEVVRNLGDFKTKMAYTMDELVKWSKSKIGNIK 627
Query: 295 QRKQQLKNQIDVMRNTSDASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSK 354
+ + + ++ +R +P + +++ L ++ +E+++WRQRS+I WLK+GDKN+K
Sbjct: 628 KGIESRRKKLGELRMAGMLDSEPEVKKIKEQLQEMLRREEIWWRQRSQITWLKEGDKNTK 687
Query: 355 FFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLF-QAINGDQQPVITRIQ 413
+FHL AS R RKN + KLR PNG ++++ +M D+F L+ + N D + Q
Sbjct: 688 YFHLKASWRARKNKVKKLRRPNGSLVSNEKEMGEVARDFFQNLYMKDENLDPTELFNLFQ 747
Query: 414 ARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQ 457
++T N +L KPFS +E + +F + K+PG DG F+Q
Sbjct: 748 TKITAEMNESLMKPFSEEEIGDVLFQIGHLKAPGSDGFPAHFFQ 791
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 225 bits (574), Expect = 7e-57
Identities = 131/429 (30%), Positives = 221/429 (50%), Gaps = 11/429 (2%)
Query: 35 IETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQD 94
+ETL +K+ L Y +GF + GRSGG+A++W+N+ S+++ + I+ +
Sbjct: 190 LETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLISQDERLIDSHVTF 249
Query: 95 PVKGPWRLTAFYGYPDHGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRP 154
K + L+ YG+P R W+ L + + W ++GDFN+ LS ++K GGP R
Sbjct: 250 NNKS-FYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMRE 308
Query: 155 HWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASL 214
W R F+ VS C++ D+ G +F+W T H + +DR + W FP+A
Sbjct: 309 EWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERHT-HTVKCCLDRVFINSAWTATFPYAET 367
Query: 215 QTLVAPMSDHTPLLLQLDPP-PWRAPHNSFRFNNSWLIEPELAHLVKDNWSYYPSSN--- 270
+ L SDH P+L+ + P R+ FRF+N + P +V+ +W +S
Sbjct: 368 EFLDFTGSDHKPVLVHFNESFPRRS--KLFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTP 425
Query: 271 IVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPRLI-ELQNSLANL 329
I ++S C + M A++ + QR ++L++ ++ S VD +LI +LQ SLA
Sbjct: 426 ITERISSCRQAMARLKHASNLNSEQRIKKLQSSLN-RAMESTRRVDRQLIPQLQESLAKA 484
Query: 330 ILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAH 389
E++YW+Q+S+ W+K+GD+N+ +FH +R +N ++ + G T ++ H
Sbjct: 485 FSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNH 544
Query: 390 IHDYFSGLFQAINGDQQPV-ITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGP 448
D+F+ +F P+ ++ VT N LTK FS E +A+ + DK+PGP
Sbjct: 545 AQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGP 604
Query: 449 DGLNPGFYQ 457
DGL FY+
Sbjct: 605 DGLTARFYK 613
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
Length = 1333
Score = 218 bits (556), Expect = 9e-55
Identities = 132/469 (28%), Positives = 234/469 (49%), Gaps = 10/469 (2%)
Query: 1 MNVIAWNCRGLGNVK--AVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFS 58
M++++WNC+GLG + +P + ++ + P+++ L+ET +N + L+ +G++ F+
Sbjct: 1 MSLVSWNCQGLGWSQDLTIPRLMEMRLSHFPEVLFLMETKNCSNVVVDLQEWLGYERVFT 60
Query: 59 VDCIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSW 118
V+ IG SGG+A+ W+ I ++ I+ IQ + ++ YG P + W
Sbjct: 61 VNPIGLSGGLALFWKKGVDIVIKYADKNLIDFQIQFG-SHEFYVSCVYGNPAFSDKHLVW 119
Query: 119 ELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGY 178
E + + +PWC++GDFN L +KRGGP R F + + C++++LP G
Sbjct: 120 EKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELPSIGN 179
Query: 179 QFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPPPWRA 238
FTW ++R+DR W FP ++ + L SDH P+L++L
Sbjct: 180 PFTWGGKTNEMWI-QSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKTK-EE 237
Query: 239 PHNSFRFNNSWLIEPELAHLVKDNWSYYPSSN---IVTKLSYCIEDMKYWSKANHPHFNQ 295
+FRF+ +P + + W+ + ++ KL +C + W K N+ + +
Sbjct: 238 YRGNFRFDKRLFNQPNVKETIVQAWNGSQRNENLLVLDKLKHCRSALSRWKKENNINSST 297
Query: 296 RKQQLKNQIDVMRNTSDASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKF 355
R Q + +++ +++ D + L+N L E+V+W Q+S+ W+ GDKN+ F
Sbjct: 298 RITQARAALELEQSSGFPRAD-LVFSLKNDLCKANHDEEVFWSQKSRAKWMHSGDKNTSF 356
Query: 356 FHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAINGDQ-QPVITRIQA 414
FH + R K I +L NG + + + A YFS LF++ + + Q
Sbjct: 357 FHASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFVDLFEDYQP 416
Query: 415 RVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFFGMI 463
RVTE+ N TL S +E +EAVF++ S +PG DG F+Q ++ +I
Sbjct: 417 RVTESMNNTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSII 465
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 216 bits (550), Expect = 4e-54
Identities = 141/473 (29%), Positives = 240/473 (49%), Gaps = 16/473 (3%)
Query: 1 MNVIAWNCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVD 60
M +IAWNCRGLGN V + +L + PDI+ L T + NK+ ++ +G D
Sbjct: 448 MKIIAWNCRGLGNGPTVRGLLNLQKEDDPDILFLSNTKMDTNKLQCFRWKLGMPNLVVKD 507
Query: 61 CIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWEL 120
C G+SGG+AV W+ + + S+ F+++ + + WR T YG P ++ +W+
Sbjct: 508 CQGKSGGLAVFWKKEINLRLRTVSRLFMDVDVMEDDGFWWRFTGVYGEPRSDKKDLTWKA 567
Query: 121 LRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQF 180
LR+L++ + W +GDFN+ L +K G + + F++ + C+L +L G F
Sbjct: 568 LRTLNATKGELWLCVGDFNEVLFSWEKERGHAKAQSCMDRFRQTLDCCSLSNLGFTGDPF 627
Query: 181 TWFKS--IGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQL-DPPPWR 237
TW + + + +E R+DRA+ + W FP ++ SDH P+++ + W
Sbjct: 628 TWRNNWCVRDGYIRE-RLDRAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVTTSNEVIWN 686
Query: 238 APHN--SFRFNNSWLIEPELAHLVKDNW--SYYP-SSNIVTKLSYCIEDMKYWSKANHPH 292
+ FRF W E A +V++ W S P ++ + ++ WSK
Sbjct: 687 GGRSKPGFRFEAGWAREEHCAPIVENAWKLSVGPRGGKVMDAIREVAANLWDWSKNFLGD 746
Query: 293 FNQRKQQLKNQIDVMRNTS-DASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDK 351
+R ++ K ++ R + +S R L+ L L Q ++YWRQR+ WL+ GD+
Sbjct: 747 LEKRIKKAKQALEAHRRSPISSSTASREAVLKYRLDKLEEQRELYWRQRANQHWLEKGDR 806
Query: 352 NSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQA---INGDQQPV 408
N+KFFH AS R+++N I KLR +G +T + + I +++ LF A +N D+ +
Sbjct: 807 NTKFFHECASERKKRNKIKKLRRDDGEVITDEAGSLSLISEFYKQLFTAGVPLNLDE--L 864
Query: 409 ITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKS-PGPDGLNPGFYQFFF 460
+ + RVT N L K + +E K+A+ S+ K+ PG DG+ FY+ F+
Sbjct: 865 LQNVPKRVTSTMNDELMKGVTTEEIKKALDSIGDLKAPPGSDGMPALFYKQFW 917
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 211 bits (538), Expect = 1e-52
Identities = 138/454 (30%), Positives = 219/454 (47%), Gaps = 9/454 (1%)
Query: 9 RGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGI 68
+G+G + +L +V+K D++ LIETL IS L +GF + G SGG+
Sbjct: 370 KGIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGL 429
Query: 69 AVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWELLRSLHSQS 128
A+LW++S S L I++ I + L+ YG+P R W +L
Sbjct: 430 ALLWKDSVRLSNLYQDDRHIDVHISINNIN-FYLSRVYGHPCQSERHSLWTHFENLSKTR 488
Query: 129 DDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGT 188
+DPW +IGDFN+ LS ++K GGP R W RGF+ VS C+L D+ G +F+W
Sbjct: 489 NDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGE-RH 547
Query: 189 SHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPPPWRAPHNSFRFNNS 248
SH + +DRA + LFP A L+ L SDH PL L L+ R FRF+
Sbjct: 548 SHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETR-KMRPFRFDKR 606
Query: 249 WLIEPELAHLVKDNWSYY---PSSNIVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQID 305
L P VK W+ ++ ++ C + M ++ + R QL+ +D
Sbjct: 607 LLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALD 666
Query: 306 VMRNTSDASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRR 365
++ + + + +Q L E+ YW+Q+S+ W+K+GD+N++FFH +R
Sbjct: 667 KAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFS 726
Query: 366 KNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAINGDQQPVI--TRIQARVTENDNAT 423
N + ++ G ++ H ++F+ ++++ NG +I + VTE N
Sbjct: 727 VNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYES-NGRPVSIIDFAGFKPIVTEQINDD 785
Query: 424 LTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQ 457
LTK S E A+ + DK+PGPDGL FY+
Sbjct: 786 LTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYK 819
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 211 bits (536), Expect = 2e-52
Identities = 138/453 (30%), Positives = 218/453 (47%), Gaps = 9/453 (1%)
Query: 10 GLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGIA 69
G+G + +L +V+K D++ LIETL IS L +GF + G SGG+A
Sbjct: 391 GIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGLA 450
Query: 70 VLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWELLRSLHSQSD 129
+LW++S S L I++ I + L+ YG+P R W +L +
Sbjct: 451 LLWKDSVRLSNLYQDDRHIDVHISINNIN-FYLSRVYGHPCQSERHSLWTHFENLSKTRN 509
Query: 130 DPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTS 189
DPW +IGDFN+ LS ++K GGP R W RGF+ VS C+L D+ G +F+W S
Sbjct: 510 DPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGE-RHS 568
Query: 190 HAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPPPWRAPHNSFRFNNSW 249
H + +DRA + LFP A L+ L SDH PL L L+ R FRF+
Sbjct: 569 HTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETR-KMRPFRFDKRL 627
Query: 250 LIEPELAHLVKDNWSYY---PSSNIVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDV 306
L P VK W+ ++ ++ C + M ++ + R QL+ +D
Sbjct: 628 LEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDK 687
Query: 307 MRNTSDASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRK 366
++ + + + +Q L E+ YW+Q+S+ W+K+GD+N++FFH +R
Sbjct: 688 AMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSV 747
Query: 367 NTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAINGDQQPVI--TRIQARVTENDNATL 424
N + ++ G ++ H ++F+ ++++ NG +I + VTE N L
Sbjct: 748 NRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYES-NGRPVSIIDFAGFKPIVTEQINDDL 806
Query: 425 TKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQ 457
TK S E A+ + DK+PGPDGL FY+
Sbjct: 807 TKDLSDLEIYNAICHIGDDKAPGPDGLTARFYK 839
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 209 bits (531), Expect = 7e-52
Identities = 124/436 (28%), Positives = 217/436 (49%), Gaps = 14/436 (3%)
Query: 35 IETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQD 94
+ET+ + + + ++ + +D ++V+ +G+ GG+A+LW++S + ++ ++ +Q
Sbjct: 1 METMHSRDDLVDIQSWLEYDQVYTVEPVGKCGGLALLWKSSVQVDLKFVDKNLMDAQVQF 60
Query: 95 PVKGPWRLTAFYGYPDHGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRP 154
+ ++ YG PD +R +WE + + D WC+ GDFND L +K GGP R
Sbjct: 61 GAVN-FCVSCVYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRS 119
Query: 155 HWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASL 214
+ F E + C+L+++P +G FTW G H + R+DRA W FP ++
Sbjct: 120 DLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRG-DHWIQCRLDRAFGNKEWFCFFPVSNQ 178
Query: 215 QTLVAPMSDHTPLLLQLDPPPWRAPHNSFRFNNSWLIEPELAHLVKDNWS---YYPSSNI 271
L SDH P+L++L + FRF+ +L + ++ + WS + + ++
Sbjct: 179 TFLDFRGSDHRPVLIKL-MSSQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNISV 237
Query: 272 VTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDP---RLIELQNSLAN 328
+L C + + W K N N NQ++ + V P R+ L+ LA
Sbjct: 238 ADRLRACRKSLSSWKKQN----NLNSLDKINQLEAALEKEQSLVWPIFQRVSVLKKDLAK 293
Query: 329 LILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSA 388
+E+ YW+Q+S+ WL+ G++NSK+FH R++ I KL+ NG TS+
Sbjct: 294 AYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGE 353
Query: 389 HIHDYFSGLFQAIN-GDQQPVITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPG 447
YF LF++ N + + RV+E N +L S E KEAVFS+ +PG
Sbjct: 354 VAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPG 413
Query: 448 PDGLNPGFYQFFFGMI 463
PDG++ F+Q ++ +
Sbjct: 414 PDGMSALFFQHYWSTV 429
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 206 bits (523), Expect = 6e-51
Identities = 122/418 (29%), Positives = 207/418 (49%), Gaps = 14/418 (3%)
Query: 53 FDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHG 112
+D ++V+ +G+ GG+A+LW++S + ++ ++ +Q + ++ YG PD
Sbjct: 16 YDQVYTVEPVGKCGGLALLWKSSVQVDLKFVDKNLMDAQVQFGAVN-FCVSCVYGDPDRS 74
Query: 113 RRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLID 172
+R +WE + + D WC+ GDFND L +K GGP R + F E + C+L++
Sbjct: 75 KRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVE 134
Query: 173 LPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLD 232
+P +G FTW G H + R+DRA W FP ++ L SDH P+L++L
Sbjct: 135 MPAHGNGFTWAGRRG-DHWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKL- 192
Query: 233 PPPWRAPHNSFRFNNSWLIEPELAHLVKDNWS---YYPSSNIVTKLSYCIEDMKYWSKAN 289
+ FRF+ +L + ++ + WS + + ++ +L C + + W K N
Sbjct: 193 MSSQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNISVADRLRACRKSLSSWKKQN 252
Query: 290 HPHFNQRKQQLKNQIDVMRNTSDASVDP---RLIELQNSLANLILQEDVYWRQRSKIFWL 346
N NQ++ + V P R+ L+ LA +E+ YW+Q+S+ WL
Sbjct: 253 ----NLNSLDKINQLEAALEKEQSLVWPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWL 308
Query: 347 KDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAIN-GDQ 405
+ G++NSK+FH R++ I KL+ NG TS+ YF LF++ N
Sbjct: 309 RSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGF 368
Query: 406 QPVITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFFGMI 463
+ + RV+E N +L S E KEAVFS+ +PGPDG++ F+Q ++ +
Sbjct: 369 TDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTV 426
>emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar-group)]
gi|50923489|ref|XP_472105.1| OSJNBa0081G05.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1711
Score = 204 bits (520), Expect = 1e-50
Identities = 127/440 (28%), Positives = 216/440 (48%), Gaps = 9/440 (2%)
Query: 31 IVILIETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFINM 90
+V L ET + K+S L+ + F V G SGG+A+ W S + + ++ +I+
Sbjct: 578 LVFLCETRQSVEKMSRLRRKLAFRGFVGVSSEGMSGGLALYWDESVSVDVKDINKRYIDA 637
Query: 91 SIQDPVKGP-WRLTAFYGYPDHGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRG 149
++ P W +T YG P R W LLR++ S PW +IGDFN+ L +
Sbjct: 638 YVRLSSDEPQWHITFVYGEPRVENRHRMWSLLRTIRQSSALPWMVIGDFNETLWQFEHFS 697
Query: 150 GPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELF 209
R ++ F++A+ DC+L DL G T+ + R+DRA+ W +LF
Sbjct: 698 KNPRCETQMQNFRDALYDCDLQDLGFKGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLF 757
Query: 210 PHASLQTLVAPMSDHTPLLLQLDPPPWRAPHNS-FRFNNSWLIEPELAHLVKDNWSYY-- 266
P A + LV+P SDH+P+LL+ P + W EPE ++++ W
Sbjct: 758 PEAQVSHLVSPCSDHSPILLEFIVKDTTRPRQKCLHYEIVWEREPESVQVIEEAWINAGV 817
Query: 267 --PSSNIVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPRLIELQN 324
+I L + ++ W K + + ++ + +++ + ++ A R + +
Sbjct: 818 KTDLGDINIALGRVMSALRSWGKTKVKNVGRELEKARKKLEDLIASNAARSSIR--QATD 875
Query: 325 SLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQD 384
+ ++ +E++ W QRS++ WLK+GD+N++FFH A R +KN ISKLR NG +
Sbjct: 876 HMNEMLYREEMLWLQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSMTS 935
Query: 385 DMSAHIHDYFSGLFQAINGDQQPVITRI-QARVTENDNATLTKPFSIDEFKEAVFSMHSD 443
+ +YF +++A +TR+ Q +VT+ N L + F +E +A+F +
Sbjct: 936 VLETMATEYFQEVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPL 995
Query: 444 KSPGPDGLNPGFYQFFFGMI 463
KSPGPDG FYQ +G +
Sbjct: 996 KSPGPDGFPARFYQRNWGTL 1015
>emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultivar-group)]
Length = 1285
Score = 204 bits (520), Expect = 1e-50
Identities = 127/440 (28%), Positives = 216/440 (48%), Gaps = 9/440 (2%)
Query: 31 IVILIETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFINM 90
+V L ET + K+S L+ + F V G SGG+A+ W S + + ++ +I+
Sbjct: 578 LVFLCETRQSVEKMSRLRRKLAFRGFVGVSSEGMSGGLALYWDESVSVDVKDINKRYIDA 637
Query: 91 SIQDPVKGP-WRLTAFYGYPDHGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRG 149
++ P W +T YG P R W LLR++ S PW +IGDFN+ L +
Sbjct: 638 YVRLSSDEPQWHITFVYGEPRVENRHRMWSLLRTIRQSSALPWMVIGDFNETLWQFEHFS 697
Query: 150 GPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELF 209
R ++ F++A+ DC+L DL G T+ + R+DRA+ W +LF
Sbjct: 698 KNPRCETQMQNFRDALYDCDLQDLGFKGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLF 757
Query: 210 PHASLQTLVAPMSDHTPLLLQLDPPPWRAPHNS-FRFNNSWLIEPELAHLVKDNWSYY-- 266
P A + LV+P SDH+P+LL+ P + W EPE ++++ W
Sbjct: 758 PEAQVSHLVSPCSDHSPILLEFIVKDTTRPRQKCLHYEIVWEREPESVQVIEEAWINAGV 817
Query: 267 --PSSNIVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPRLIELQN 324
+I L + ++ W K + + ++ + +++ + ++ A R + +
Sbjct: 818 KTDLGDINIALGRVMSALRSWGKTKVKNVGRELEKARKKLEDLIASNAARSSIR--QATD 875
Query: 325 SLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQD 384
+ ++ +E++ W QRS++ WLK+GD+N++FFH A R +KN ISKLR NG +
Sbjct: 876 HMNEMLYREEMLWLQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSMTS 935
Query: 385 DMSAHIHDYFSGLFQAINGDQQPVITRI-QARVTENDNATLTKPFSIDEFKEAVFSMHSD 443
+ +YF +++A +TR+ Q +VT+ N L + F +E +A+F +
Sbjct: 936 VLETMATEYFQEVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPL 995
Query: 444 KSPGPDGLNPGFYQFFFGMI 463
KSPGPDG FYQ +G +
Sbjct: 996 KSPGPDGFPARFYQRNWGTL 1015
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 204 bits (519), Expect = 2e-50
Identities = 130/467 (27%), Positives = 228/467 (47%), Gaps = 12/467 (2%)
Query: 3 VIAWNCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVDCI 62
VI+WNC+GL N + +K++ + + PDI+ L+ET + + + + +G+D+ +V+
Sbjct: 2 VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPE 61
Query: 63 GRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWELLR 122
GRSGG+A+ W++ L ++ +++ + K W ++ YG P R WE L
Sbjct: 62 GRSGGLAIFWKSHLEIEFLYADKNLMDLQVSSRNK-VWFISCVYGLPVTHMRPKLWEHLN 120
Query: 123 SLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTW 182
S+ + + WC+IGDFND S +K GGP R + F+ + +C++ +L G FTW
Sbjct: 121 SIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTW 180
Query: 183 FKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQL--DPPPWRAPH 240
+ + ++DR W +FP+A L SDH P+L++ D +R
Sbjct: 181 GGNRNDQWV-QCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFR--- 236
Query: 241 NSFRFNNSWLIEPELAHLVKDNWSYYPSSNIVT---KLSYCIEDMKYWSKANHPHFNQRK 297
FR++ +P ++ +W+ S + L C + W ++ + R
Sbjct: 237 GQFRYDKRLDDDPYCIEVIHRSWNSAMSQGTHSSFFSLIECRRAISVWKHSSDTNAQSRI 296
Query: 298 QQLKNQIDVMRNTSDASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFH 357
++L+ +D ++ PR+ +++ L+ E+++WRQ+S+ WL GDKN+ FFH
Sbjct: 297 KRLRKDLDAEKSI-QIPCWPRIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFH 355
Query: 358 LTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAIN-GDQQPVITRIQARV 416
T S R KN +S L N T D +F LF + + +QA+V
Sbjct: 356 ATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKV 415
Query: 417 TENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFFGMI 463
T N L + + E AVFS++ + +PGPDG F+Q + ++
Sbjct: 416 TSEMNHNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLV 462
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 204 bits (518), Expect = 2e-50
Identities = 127/429 (29%), Positives = 212/429 (48%), Gaps = 11/429 (2%)
Query: 43 KISGLKYAIGFDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQ-DPVKGPWR 101
K+S L+ +G V G SGG+A+ W S + + ++ +I+ +Q P + W
Sbjct: 772 KMSRLRGRLGLRGFTGVSSEGMSGGLALYWDESVSVDVKDINKRYIDAYVQLSPEEPQWH 831
Query: 102 LTAFYGYPDHGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGF 161
+T YG P R W LLR++H S PW +IGDFN+ + + R ++ F
Sbjct: 832 VTFVYGEPRVENRHRMWSLLRTIHQSSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQDF 891
Query: 162 QEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPM 221
++ + DC L DL G T+ + R+DR + W +++ A + LV+P
Sbjct: 892 RDVLQDCELHDLGFKGVPHTYDNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSPC 951
Query: 222 SDHTPLLLQLD-PPPWRAPHNSFRFNNSWLIEPELAHLVKDNWSYYPSS----NIVTKLS 276
SDH P+LL L P + + W EPE ++++ W +I L+
Sbjct: 952 SDHCPILLNLVVKDPHQLRQKCLHYEIVWEREPEATQVIEEAWVVAGEKADLGDINKALA 1011
Query: 277 YCIEDMKYWSKANHPHFNQRKQQLKNQI-DVMRNTSDASVDPRLIELQNSLANLILQEDV 335
+ ++ WS+A + + ++ + ++ +++ + +D +V + N L + +E++
Sbjct: 1012 KVMTALRSWSRAKVKNVGRELEKARKKLAELIESNADRTVIRNATDHMNEL---LYREEM 1068
Query: 336 YWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFS 395
W QRS++ WLKD D+N+KFFH A R +KN ISKLR N +S + + +YF
Sbjct: 1069 LWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQ 1128
Query: 396 GLFQAINGDQQPVITR-IQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPG 454
++ A +TR IQ +VT+ N L + F+ DE +A+F + KSPGPDG
Sbjct: 1129 DVYTADPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPAR 1188
Query: 455 FYQFFFGMI 463
FYQ +G I
Sbjct: 1189 FYQRNWGTI 1197
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 197 bits (501), Expect = 2e-48
Identities = 136/533 (25%), Positives = 248/533 (46%), Gaps = 21/533 (3%)
Query: 1 MNVIAWNCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVD 60
M V WNC+GLG V ++++ RVY D++ LIET +N L +GF+ +
Sbjct: 363 MRVGFWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGVKMGFEDMCIIS 422
Query: 61 CIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWEL 120
G SGG+ V W+ ++++ +++ ++ + L+ YG+P R WE
Sbjct: 423 PRGLSGGLVVYWKKHLSIQVISHDVRLVDLYVEYK-NFNFYLSCIYGHPIPSERHHLWEK 481
Query: 121 LRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQF 180
L+ + + PW + GDFN+ L+ ++K+GG R ++ F ++ CN+ DL G +
Sbjct: 482 LQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNPY 541
Query: 181 TWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPPPWRAPH 240
+W + E+ +DR + W FP + L SDH P+++ +
Sbjct: 542 SWVGK-RQNETIESCLDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAEEVC-TKR 599
Query: 241 NSFRFNNSWLIEPELAHLVKDNWSYYPSSN---IVTKLSYCIEDMKYWSKANHPHFNQRK 297
FR++ + V+ W+ S + KL C +++ W + + ++
Sbjct: 600 GQFRYDRRHFQFEDFVDSVQRGWNRGRSDSHGGYYEKLHCCRQELAKWKRRTKTNTAEKI 659
Query: 298 QQLKNQIDVMRNTSDASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFH 357
+ LK ++D ++ L+ L E++YW +S+ W+ GD+N+ FF+
Sbjct: 660 ETLKYRVDAAER-DHTLPHQTILRLRQDLNQAYRDEELYWHLKSRNRWMLLGDRNTMFFY 718
Query: 358 LTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAI-NGDQQPVITRIQARV 416
+ R+ +N I + G D + +YF+ LF D + +I+ I +V
Sbjct: 719 ASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADLFTTTQTSDWEEIISGIAPKV 778
Query: 417 TENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFFGMI-----LVLRFSVQ 471
TE N L + + E ++AVF++ +D++PG DG FY + +I L++R +
Sbjct: 779 TEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVCLMVRHFFE 838
Query: 472 LALGSNLVLSRLISMTQTLFLHPKVITRKQLKT-SALSLCATSSTKLSLKSLL 523
+ V+ I+ TQ + L PK+I K + +SLC T+S K+ K L+
Sbjct: 839 -----SDVMDNQINQTQ-ICLIPKIIDPKHMSDYRPISLC-TASYKIISKILI 884
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 197 bits (501), Expect = 2e-48
Identities = 125/415 (30%), Positives = 201/415 (48%), Gaps = 29/415 (6%)
Query: 51 IGFDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPD 110
+G+ + F++ G SGG+A+ W+ + IL + +FI+
Sbjct: 17 MGYAHRFTIPPEGLSGGLALYWKENVEVEILEAAPNFID--------------------- 55
Query: 111 HGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNL 170
R W+ + SL +Q W + GDFND L S+K+GGP R F+ VS L
Sbjct: 56 --NRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGL 113
Query: 171 IDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQ 230
D+ G +W + SH ++R+DRAL W ELFP + + L SDH PL+
Sbjct: 114 WDINHTGNSLSW-RGTRYSHFIKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTY 172
Query: 231 LDPPPWRAPHNSFRFNNSWLIEPELAHLVKDNWSYYPSSNIVTKLSYCIEDMKYWSKANH 290
PP + FRF+ + E+ LVK+ W +++ K+S C + + W+K +
Sbjct: 173 FGAPPLKRS-KPFRFDRRLREKEEIRALVKEVWELARQDSVLYKISRCRQSIIKWTKEQN 231
Query: 291 PHFNQRKQQLKNQIDVMRNTSDASVDPRLI-ELQNSLANLILQEDVYWRQRSKIFWLKDG 349
N K K Q + S DP LI + L QE+++W+Q S++ WL G
Sbjct: 232 S--NSAKAIKKAQQALESALSADIPDPSLIGSITQELEAAYRQEELFWKQWSRVQWLNSG 289
Query: 350 DKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLF-QAINGDQQPV 408
D+N +FH T +RR N +S + +G ++ +++ I YF +F + N D Q V
Sbjct: 290 DRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQVV 349
Query: 409 ITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFFGMI 463
+ ++ + N L K S+ E KEA+FS+ +DK+PGPDG + F+ ++ +I
Sbjct: 350 QEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDII 404
>dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1197
Score = 196 bits (499), Expect = 3e-48
Identities = 130/462 (28%), Positives = 228/462 (49%), Gaps = 15/462 (3%)
Query: 4 IAWNCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDY-HFSVDCI 62
++WNC+G+GN K V ++++++ PD++ L+ET+ N +++ K Y HF V
Sbjct: 1 MSWNCQGIGNPKTVRRVREILKKLSPDVIFLMETM-NQDEVVLKKLDFLKRYNHFLVSPS 59
Query: 63 GRS-GGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWELL 121
G+ GG+A+ W++ +I++ +FI+ + + + T YG P+ ++ +WE L
Sbjct: 60 GQGKGGLALFWKHDVEMAIVSSCDNFIDARVSFK-RISFLATYVYGEPEQSKKGATWEKL 118
Query: 122 RSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFT 181
+ L ++PW + GDFN+ L S+K GP R F+ +S+C L DL G +
Sbjct: 119 KCLADNREEPWFLTGDFNEILDNSEKSEGPPRAEGSFVEFRSFMSECGLFDLKHLGNSLS 178
Query: 182 WFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPPPWRAPHN 241
W + + +H AR+DRA+ LELF S+H P++ L R
Sbjct: 179 W-RGVRHTHLVRARLDRAMSNGACLELFSRGRCDYRKFEGSNHRPIITFLRQDKQR-KKG 236
Query: 242 SFRFNNSWLIEPELAHLVKDNWSYYPSSNIVTKLSYCIEDMKYWSKANHPHFNQRKQQLK 301
FR++ E+ L+ W+ S ++ KLS C + W+K + + + LK
Sbjct: 237 LFRYDRRLKENEEIKDLIAAAWNEDLSDSVEKKLSRCRRAIISWTKETQRNSQKIIEALK 296
Query: 302 NQID--VMRNTSDASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLT 359
+++ ++ +D + L+++ + L+ L E+ +W+QRS+ WL GD+NS +FH
Sbjct: 297 VKLEQAMVIPVNDVCL---LVQINSELSAAYLAEEAFWKQRSRQNWLSLGDQNSGYFHAV 353
Query: 360 ASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLF--QAINGDQQPVITR--IQAR 415
R N +S G + + I + LF Q N ++ I + + +
Sbjct: 354 TKGRSCLNNLSVRETDLGEKVFEDSQFAEVISTCYQALFTSQLSNPEEISRIVQESVHPK 413
Query: 416 VTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQ 457
V E +N L S E KEA+F++H DK+PG DG + F+Q
Sbjct: 414 VIEEENDFLISIPSAMEIKEALFNVHPDKAPGYDGFSASFFQ 455
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.338 0.147 0.484
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,172,789,832
Number of Sequences: 2540612
Number of extensions: 88409649
Number of successful extensions: 266465
Number of sequences better than 10.0: 380
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 265435
Number of HSP's gapped (non-prelim): 595
length of query: 1356
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1216
effective length of database: 507,674,714
effective search space: 617332452224
effective search space used: 617332452224
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 82 (36.2 bits)
Medicago: description of AC146855.1