BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146842.3 + phase: 0 /pseudo
(57 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK38667.1| glutamate decarboxylase isozyme 3 [Nicotiana taba... 73 2e-12
gb|AAN46801.1| At5g17330/MKP11_18 [Arabidopsis thaliana] gi|2045... 73 2e-12
ref|XP_482841.1| putative glutamate decarboxylase [Oryza sativa ... 73 2e-12
ref|XP_482840.1| glutamate decarboxylase [Oryza sativa (japonica... 73 2e-12
emb|CAG30580.1| glutamate decarboxylase 1 [Lotus corniculatus va... 73 2e-12
gb|AAL83983.1| glutamate decarboxylase [Oryza sativa] 73 2e-12
gb|AAX12729.1| glutamate decarboxylase [Oryza sativa] 73 2e-12
gb|AAA93132.1| glutamate decarboxylase 73 2e-12
sp|Q07346|DCE_PETHY Glutamate decarboxylase (GAD) gi|309680|gb|A... 72 3e-12
ref|XP_462654.1| OSJNBa0064H22.6 [Oryza sativa (japonica cultiva... 72 3e-12
ref|XP_462650.1| OSJNBa0064H22.2 [Oryza sativa (japonica cultiva... 72 3e-12
dbj|BAD95387.1| hypothetical protein [Arabidopsis thaliana] gi|6... 72 3e-12
gb|AAM70582.1| At1g65960/F12P19_12 [Arabidopsis thaliana] gi|152... 72 3e-12
gb|AAM70569.1| At2g02010/F14H20.8 [Arabidopsis thaliana] gi|4406... 72 3e-12
gb|AAL91148.1| glutamate decarboxylase, putative [Arabidopsis th... 72 3e-12
gb|AAL16126.1| At1g65960/F12P19_12 [Arabidopsis thaliana] 72 3e-12
gb|AAS79671.1| glutamate decarboxylase 4b [Brassica juncea] 72 3e-12
gb|AAS79670.1| glutamate decarboxylase 4a [Brassica juncea] 72 3e-12
gb|AAS79669.1| glutamate decarboxylase 2 [Brassica juncea] 72 3e-12
dbj|BAB32871.1| glutamate decarboxylase [Oryza sativa (japonica ... 72 3e-12
>gb|AAK38667.1| glutamate decarboxylase isozyme 3 [Nicotiana tabacum]
Length = 491
Score = 73.2 bits (178), Expect = 2e-12
Identities = 32/41 (78%), Positives = 35/41 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIWCSRR 57
F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWVIW +++
Sbjct: 254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKQ 294
>gb|AAN46801.1| At5g17330/MKP11_18 [Arabidopsis thaliana]
gi|20453187|gb|AAM19834.1| AT5g17330/MKP11_18
[Arabidopsis thaliana] gi|15237949|ref|NP_197235.1|
glutamate decarboxylase 1 (GAD 1) [Arabidopsis thaliana]
gi|10177078|dbj|BAB10520.1| glutamate decarboxylase 1
(GAD 1) [Arabidopsis thaliana]
gi|21264439|sp|Q42521|DCE1_ARATH Glutamate decarboxylase
1 (GAD 1)
Length = 502
Score = 72.8 bits (177), Expect = 2e-12
Identities = 32/37 (86%), Positives = 32/37 (86%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWVIW
Sbjct: 254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 290
>ref|XP_482841.1| putative glutamate decarboxylase [Oryza sativa (japonica
cultivar-group)] gi|51964956|ref|XP_507262.1| PREDICTED
P0104B02.16-1 gene product [Oryza sativa (japonica
cultivar-group)] gi|42409426|dbj|BAD10771.1| putative
glutamate decarboxylase [Oryza sativa (japonica
cultivar-group)]
Length = 497
Score = 72.8 bits (177), Expect = 2e-12
Identities = 32/40 (80%), Positives = 34/40 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIWCSR 56
F Y LEWDFRLPLVKSINVSGHKYGL Y G+GWVIW S+
Sbjct: 254 FLYPELEWDFRLPLVKSINVSGHKYGLVYPGVGWVIWRSK 293
>ref|XP_482840.1| glutamate decarboxylase [Oryza sativa (japonica cultivar-group)]
gi|42409425|dbj|BAD10770.1| glutamate decarboxylase
[Oryza sativa (japonica cultivar-group)]
gi|13111472|dbj|BAB32870.1| glutamate decarboxylase
[Oryza sativa (japonica cultivar-group)]
gi|13111468|dbj|BAB32868.1| glutamate decarboxylase
[Oryza sativa (japonica cultivar-group)]
Length = 501
Score = 72.8 bits (177), Expect = 2e-12
Identities = 32/40 (80%), Positives = 34/40 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIWCSR 56
F Y LEWDFRLPLVKSINVSGHKYGL Y G+GWVIW S+
Sbjct: 258 FLYPELEWDFRLPLVKSINVSGHKYGLVYPGVGWVIWRSK 297
>emb|CAG30580.1| glutamate decarboxylase 1 [Lotus corniculatus var. japonicus]
Length = 420
Score = 72.8 bits (177), Expect = 2e-12
Identities = 32/37 (86%), Positives = 32/37 (86%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWVIW
Sbjct: 254 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 290
>gb|AAL83983.1| glutamate decarboxylase [Oryza sativa]
Length = 282
Score = 72.8 bits (177), Expect = 2e-12
Identities = 32/40 (80%), Positives = 34/40 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIWCSR 56
F Y LEWDFRLPLVKSINVSGHKYGL Y G+GWVIW S+
Sbjct: 39 FLYPELEWDFRLPLVKSINVSGHKYGLVYPGVGWVIWRSK 78
>gb|AAX12729.1| glutamate decarboxylase [Oryza sativa]
Length = 505
Score = 72.8 bits (177), Expect = 2e-12
Identities = 32/40 (80%), Positives = 34/40 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIWCSR 56
F Y LEWDFRLPLVKSINVSGHKYGL Y G+GWVIW S+
Sbjct: 254 FLYPELEWDFRLPLVKSINVSGHKYGLVYPGVGWVIWRSK 293
>gb|AAA93132.1| glutamate decarboxylase
Length = 502
Score = 72.8 bits (177), Expect = 2e-12
Identities = 32/37 (86%), Positives = 32/37 (86%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWVIW
Sbjct: 254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 290
>sp|Q07346|DCE_PETHY Glutamate decarboxylase (GAD) gi|309680|gb|AAA33710.1| glutamate
decarboxylase gi|294112|gb|AAA33709.1| glutamate
decarboxylase
Length = 500
Score = 72.4 bits (176), Expect = 3e-12
Identities = 31/37 (83%), Positives = 32/37 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWV+W
Sbjct: 254 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVW 290
>ref|XP_462654.1| OSJNBa0064H22.6 [Oryza sativa (japonica cultivar-group)]
gi|38344825|emb|CAD40877.2| OSJNBa0064H22.6 [Oryza
sativa (japonica cultivar-group)]
Length = 500
Score = 72.4 bits (176), Expect = 3e-12
Identities = 31/37 (83%), Positives = 32/37 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y G+GWVIW
Sbjct: 256 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIW 292
>ref|XP_462650.1| OSJNBa0064H22.2 [Oryza sativa (japonica cultivar-group)]
gi|38344821|emb|CAD40881.2| OSJNBa0064H22.2 [Oryza
sativa (japonica cultivar-group)]
Length = 484
Score = 72.4 bits (176), Expect = 3e-12
Identities = 31/37 (83%), Positives = 32/37 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y G+GWVIW
Sbjct: 253 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIW 289
>dbj|BAD95387.1| hypothetical protein [Arabidopsis thaliana]
gi|62321706|dbj|BAD95332.1| hypothetical protein
[Arabidopsis thaliana]
Length = 365
Score = 72.4 bits (176), Expect = 3e-12
Identities = 31/37 (83%), Positives = 32/37 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWV+W
Sbjct: 124 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVW 160
>gb|AAM70582.1| At1g65960/F12P19_12 [Arabidopsis thaliana]
gi|15218874|ref|NP_176771.1| glutamate decarboxylase 2
(GAD 2) [Arabidopsis thaliana]
gi|16226934|gb|AAL16302.1| At1g65960/F12P19_12
[Arabidopsis thaliana] gi|6227020|gb|AAF06056.1|
Identical to gb|U46665 glutamate decarboxylase 2 (GAD 2)
Arabidopsis thaliana. ESTs gb|W43856, gb|N37724,
gb|Z34642 and gb|R90491 come from this gene
gi|1184960|gb|AAC33485.1| glutamate decarboxylase 2
[Arabidopsis thaliana] gi|1236619|gb|AAC31617.1|
glutamate decarboxylase [Arabidopsis thaliana]
gi|25290895|pir||H96683 hypothetical protein F12P19.12
[imported] - Arabidopsis thaliana
gi|2494175|sp|Q42472|DCE2_ARATH Glutamate decarboxylase
2 (GAD 2)
Length = 494
Score = 72.4 bits (176), Expect = 3e-12
Identities = 31/37 (83%), Positives = 32/37 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWV+W
Sbjct: 253 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVW 289
>gb|AAM70569.1| At2g02010/F14H20.8 [Arabidopsis thaliana] gi|4406789|gb|AAD20099.1|
putative glutamate decarboxylase [Arabidopsis thaliana]
gi|13605710|gb|AAK32848.1| At2g02010/F14H20.8
[Arabidopsis thaliana] gi|15226854|ref|NP_178310.1|
glutamate decarboxylase, putative [Arabidopsis thaliana]
gi|25290897|pir||H84431 probable glutamate decarboxylase
[imported] - Arabidopsis thaliana
Length = 493
Score = 72.4 bits (176), Expect = 3e-12
Identities = 31/37 (83%), Positives = 32/37 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWV+W
Sbjct: 254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVW 290
>gb|AAL91148.1| glutamate decarboxylase, putative [Arabidopsis thaliana]
Length = 419
Score = 72.4 bits (176), Expect = 3e-12
Identities = 31/37 (83%), Positives = 32/37 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWV+W
Sbjct: 178 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVW 214
>gb|AAL16126.1| At1g65960/F12P19_12 [Arabidopsis thaliana]
Length = 494
Score = 72.4 bits (176), Expect = 3e-12
Identities = 31/37 (83%), Positives = 32/37 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWV+W
Sbjct: 253 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVW 289
>gb|AAS79671.1| glutamate decarboxylase 4b [Brassica juncea]
Length = 493
Score = 72.4 bits (176), Expect = 3e-12
Identities = 31/37 (83%), Positives = 32/37 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWV+W
Sbjct: 254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVW 290
>gb|AAS79670.1| glutamate decarboxylase 4a [Brassica juncea]
Length = 493
Score = 72.4 bits (176), Expect = 3e-12
Identities = 31/37 (83%), Positives = 32/37 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWV+W
Sbjct: 254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVW 290
>gb|AAS79669.1| glutamate decarboxylase 2 [Brassica juncea]
Length = 494
Score = 72.4 bits (176), Expect = 3e-12
Identities = 31/37 (83%), Positives = 32/37 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWV+W
Sbjct: 254 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVW 290
>dbj|BAB32871.1| glutamate decarboxylase [Oryza sativa (japonica cultivar-group)]
gi|13111470|dbj|BAB32869.1| glutamate decarboxylase
[Oryza sativa (japonica cultivar-group)]
Length = 500
Score = 72.4 bits (176), Expect = 3e-12
Identities = 31/37 (83%), Positives = 32/37 (85%)
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
F Y LEWDFRLPLVKSINVSGHKYGL Y G+GWVIW
Sbjct: 256 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIW 292
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.328 0.143 0.501
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,994,135
Number of Sequences: 2540612
Number of extensions: 3186617
Number of successful extensions: 7690
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7574
Number of HSP's gapped (non-prelim): 116
length of query: 57
length of database: 863,360,394
effective HSP length: 33
effective length of query: 24
effective length of database: 779,520,198
effective search space: 18708484752
effective search space used: 18708484752
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146842.3