BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146818.6 + phase: 0 /pseudo
(642 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (jap... 184 8e-45
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 183 1e-44
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 183 1e-44
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 183 1e-44
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica... 183 1e-44
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 183 2e-44
emb|CAE04884.2| OSJNBa0042I15.6 [Oryza sativa (japonica cultivar... 183 2e-44
gb|AAS98452.2| putative polyprotein [Oryza sativa (japonica cult... 183 2e-44
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays] 182 2e-44
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays] 182 2e-44
gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cult... 182 3e-44
ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa] gi|... 182 4e-44
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays] 181 5e-44
gb|AAD20307.1| copia-type pol polyprotein [Zea mays] 181 5e-44
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 181 7e-44
gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cult... 181 7e-44
gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cult... 181 7e-44
gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cul... 180 1e-43
gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japon... 180 1e-43
ref|XP_468915.1| putative polyprotein [Oryza sativa (japonica cu... 179 2e-43
>ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|30017518|gb|AAP12940.1| transposon protein, putative,
CACTA, En/Spm sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 1975
Score = 184 bits (467), Expect = 8e-45
Identities = 96/158 (60%), Positives = 112/158 (70%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L+ DFK G+VDTTL + +V QIYVDDIIFGSTN CKEF M EFE SM+
Sbjct: 1629 LLPKDFKIGKVDTTLSTKIIDDDFVVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMV 1688
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GEL FFLG+QI Q KDG +V QTKY K+LLK+F LED K + TPM ++ G V
Sbjct: 1689 GELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPV 1748
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPKR 455
D KLY MIGSLLYLTASRPDI+FSVC+CARFQ+ PK+
Sbjct: 1749 DLKLYHSMIGSLLYLTASRPDIMFSVCMCARFQAAPKK 1786
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 183 bits (465), Expect = 1e-44
Identities = 94/157 (59%), Positives = 117/157 (73%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L++N F+ G VD TLF L+VQIYVDDIIFG ++ +L +FS M EFE SMM
Sbjct: 1450 LLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMM 1509
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GEL FFLG+QI Q K+G++VHQTKY+KELLKKF + DCK + TPM T + ++ G +V
Sbjct: 1510 GELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEV 1569
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
DQ+ Y MIGSLLYLTASRPDI FSVCLCARFQ++P+
Sbjct: 1570 DQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPR 1606
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1877
Score = 183 bits (465), Expect = 1e-44
Identities = 94/157 (59%), Positives = 117/157 (73%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L++N F+ G VD TLF L+VQIYVDDIIFG ++ +L +FS M EFE SMM
Sbjct: 1532 LLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMM 1591
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GEL FFLG+QI Q K+G++VHQTKY+KELLKKF + DCK + TPM T + ++ G +V
Sbjct: 1592 GELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEV 1651
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
DQ+ Y MIGSLLYLTASRPDI FSVCLCARFQ++P+
Sbjct: 1652 DQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPR 1688
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1969
Score = 183 bits (465), Expect = 1e-44
Identities = 94/157 (59%), Positives = 117/157 (73%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L++N F+ G VD TLF L+VQIYVDDIIFG ++ +L +FS M EFE SMM
Sbjct: 1450 LLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMM 1509
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GEL FFLG+QI Q K+G++VHQTKY+KELLKKF + DCK + TPM T + ++ G +V
Sbjct: 1510 GELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEV 1569
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
DQ+ Y MIGSLLYLTASRPDI FSVCLCARFQ++P+
Sbjct: 1570 DQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPR 1606
>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1410
Score = 183 bits (465), Expect = 1e-44
Identities = 94/157 (59%), Positives = 117/157 (73%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L++N F+ G VD TLF L+VQIYVDDIIFG ++ +L +FS M EFE SMM
Sbjct: 1065 LLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMM 1124
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GEL FFLG+QI Q K+G++VHQTKY+KELLKKF + DCK + TPM T + ++ G +V
Sbjct: 1125 GELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEV 1184
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
DQ+ Y MIGSLLYLTASRPDI FSVCLCARFQ++P+
Sbjct: 1185 DQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPR 1221
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 183 bits (464), Expect = 2e-44
Identities = 96/157 (61%), Positives = 110/157 (69%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L+ DFK G+V+TTLF + V QIYVDDIIFGSTN CKEF M EFE SM+
Sbjct: 1239 LLSKDFKIGKVNTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMI 1298
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GEL FFLG+QI Q KDG +V QTKY K+LLK+F LED K + TPM + G V
Sbjct: 1299 GELNFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDKGGKPV 1358
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
D KLY MIGSLLYLTASRPDI+FSVC+CARFQ+ PK
Sbjct: 1359 DLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPK 1395
>emb|CAE04884.2| OSJNBa0042I15.6 [Oryza sativa (japonica cultivar-group)]
Length = 1510
Score = 183 bits (464), Expect = 2e-44
Identities = 91/157 (57%), Positives = 111/157 (69%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L+KN F+ G DTTLF K + + QIYVDDIIFGSTNAS C+EFS M FE SMM
Sbjct: 1160 LLKNGFEIGNADTTLFTKKFKSDLFICQIYVDDIIFGSTNASFCEEFSSIMTKRFEMSMM 1219
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GEL FFL +Q+ Q ++G ++ QTKY K++LKKF +ED K + TPM +D G V
Sbjct: 1220 GELTFFLWLQVKQAQEGTFISQTKYVKDILKKFGMEDAKPIKTPMPTNGHLDLDDNGKCV 1279
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
DQK+Y MIGSLLYL ASRPDI+ SVC+CARFQ+ PK
Sbjct: 1280 DQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQAEPK 1316
>gb|AAS98452.2| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1005
Score = 183 bits (464), Expect = 2e-44
Identities = 95/157 (60%), Positives = 110/157 (69%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L+ DFK G+VDTT+F + V QIYVDDIIFGSTN CKEF M EFE SM+
Sbjct: 660 LLSKDFKIGKVDTTIFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMI 719
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
EL FFLG+QI Q KDG +V QTKY K+LLK+F LED K + TPM ++ G V
Sbjct: 720 RELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFSLEDAKPIKTPMATNGHFDLDEGGKPV 779
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
D KLY MIGSLLYLTASRPDI+FSVC+CARFQ+ PK
Sbjct: 780 DLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPK 816
>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
Length = 1892
Score = 182 bits (463), Expect = 2e-44
Identities = 91/157 (57%), Positives = 114/157 (71%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
LI N FK G+ D TLF TL+ + V QIYVDDIIFGSTN S C+EFS+ M +FE SMM
Sbjct: 1546 LIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMM 1605
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GELK+FLG Q+ Q ++G ++ QTKYT+++L KF ++D K + TPM + G V
Sbjct: 1606 GELKYFLGFQVKQLREGTFISQTKYTQDILAKFGMKDAKPIKTPMGTNGHLDLDTGGKSV 1665
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
DQK+Y MIGSLLYL ASRPDI+ SVC+CARFQS+PK
Sbjct: 1666 DQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPK 1702
>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
Length = 1760
Score = 182 bits (463), Expect = 2e-44
Identities = 91/157 (57%), Positives = 114/157 (71%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
LI N FK G+ D TLF TL+ + V QIYVDDIIFGSTN S C+EFS+ M +FE SMM
Sbjct: 1414 LIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMM 1473
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GELK+FLG Q+ Q ++G ++ QTKYT+++L KF ++D K + TPM + G V
Sbjct: 1474 GELKYFLGFQVKQLQEGTFISQTKYTQDILSKFGMKDAKPIKTPMGTNGHLDLDTGGKSV 1533
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
DQK+Y MIGSLLYL ASRPDI+ SVC+CARFQS+PK
Sbjct: 1534 DQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPK 1570
>gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1411
Score = 182 bits (462), Expect = 3e-44
Identities = 95/157 (60%), Positives = 110/157 (69%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L+ DFK G+VDTTLF + V QIYVD IIFGSTN CKEF M EF+ SM+
Sbjct: 1066 LLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDGIIFGSTNEVFCKEFGDMMSREFDMSMI 1125
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GEL FFLG+QI Q KDG +V QTKY K+LLK+F LED K + TPM ++ G V
Sbjct: 1126 GELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPV 1185
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
D KLY MIGSLLYLTASRPDI+FSVC+CARFQ+ PK
Sbjct: 1186 DLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPK 1222
>ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa]
gi|13937301|gb|AAK50132.1| putative gag-pol polyprotein
[Oryza sativa]
Length = 1700
Score = 182 bits (461), Expect = 4e-44
Identities = 95/157 (60%), Positives = 110/157 (69%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L+ DFK G+VDTTLF + V QIYVDDIIF STN CKEF M EFE SM+
Sbjct: 1113 LLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFSSTNEVFCKEFGDMMSREFEMSMI 1172
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GEL FFLG+QI Q KDG +V QTKY K+LLK+F LED K + TPM ++ G V
Sbjct: 1173 GELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKLV 1232
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
D KLY MIGSLLYLTASRPDI+FS+C+CARFQ+ PK
Sbjct: 1233 DLKLYRFMIGSLLYLTASRPDIMFSICMCARFQAAPK 1269
>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
Length = 2319
Score = 181 bits (460), Expect = 5e-44
Identities = 92/157 (58%), Positives = 111/157 (70%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
LIKN F G+ D+TLF + + V QIYVDDIIFGSTN C+EFSK M + FE SMM
Sbjct: 1477 LIKNGFTIGKADSTLFTRKVDNELFVCQIYVDDIIFGSTNEKFCEEFSKVMTNRFEMSMM 1536
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GELK+FLG Q+ Q K+G ++ QTKYT+++LKKF +E K TPM + G V
Sbjct: 1537 GELKYFLGFQVKQLKEGTFLCQTKYTQDMLKKFGMEKAKHAKTPMPSNGHLDLNEEGKPV 1596
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
DQKLY MIGSLLYL ASRPDI+ SVC+CARFQ+NPK
Sbjct: 1597 DQKLYRSMIGSLLYLCASRPDIMLSVCMCARFQANPK 1633
>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
Length = 1063
Score = 181 bits (460), Expect = 5e-44
Identities = 91/157 (57%), Positives = 114/157 (71%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
LI N FK G+ D TLF TL+ + V QIYVDDIIFGSTN S C+EFS+ M +FE SMM
Sbjct: 717 LIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNKSTCEEFSRIMTQKFEMSMM 776
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GELK+FLG Q+ Q ++G ++ QTKYT+++L KF ++D K + TPM + G V
Sbjct: 777 GELKYFLGFQVKQLQEGTFICQTKYTQDILTKFGMKDAKPIKTPMGTNGHLDLDTGGKSV 836
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
DQK+Y MIGSLLYL ASRPDI+ SVC+CARFQS+PK
Sbjct: 837 DQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPK 873
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 181 bits (459), Expect = 7e-44
Identities = 95/154 (61%), Positives = 109/154 (70%)
Query: 301 NDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMMGEL 360
+DFK G+VDTTLF + V QIYVDDIIFGSTN CKEF M EFE SM+GEL
Sbjct: 1197 HDFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGEL 1256
Query: 361 KFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKVDQK 420
FFLG+QI Q KDG +V QTKY K+LLK+F LED K + TPM ++ G VD K
Sbjct: 1257 SFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLK 1316
Query: 421 LYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
LY MIGSLLYLTASRPDI+FSVC+CA FQ+ PK
Sbjct: 1317 LYRSMIGSLLYLTASRPDIMFSVCMCAWFQAAPK 1350
>gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1577
Score = 181 bits (459), Expect = 7e-44
Identities = 102/198 (51%), Positives = 123/198 (61%), Gaps = 1/198 (0%)
Query: 257 ETKLYLLNKVTVNKKVLSTLKNLLQLQDWKQSGYFYPMQ*ILIKNDFKRGQVDTTLFRGT 316
+ K LN V K L L+ ++ Y ++ L+ DFK G+VD TLF
Sbjct: 1192 DVKSAFLNDTKYPNHVYKLSKALYGLRQAPRAWY-ERLRDFLLSKDFKIGKVDITLFTKI 1250
Query: 317 LKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMMGELKFFLGIQINQRKDGVY 376
+ V QIYVDDIIFGSTN CKEF M EFE SM+GEL FFLG+QI Q K+G +
Sbjct: 1251 IGDDFFVYQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQLKNGTF 1310
Query: 377 VHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKVDQKLYIGMIGSLLYLTASR 436
V QTKY K+LLK+F LED K + TPM ++ G VD KLY MIGSLLYLT SR
Sbjct: 1311 VSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTVSR 1370
Query: 437 PDILFSVCLCARFQSNPK 454
PDI+FSVC+CARFQ+ PK
Sbjct: 1371 PDIMFSVCMCARFQAAPK 1388
>gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1799
Score = 181 bits (459), Expect = 7e-44
Identities = 93/157 (59%), Positives = 116/157 (73%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L++N F+ G VD TLF L+VQIYVDDIIFG ++ +L +F M EFE SMM
Sbjct: 1454 LLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFFDVMSREFEMSMM 1513
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GEL FFLG+QI Q K+G++VHQTKY+KELLKKF + DCK + TPM T + ++ G +V
Sbjct: 1514 GELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEV 1573
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
DQ+ Y MIGSLLYLTASRPDI FSVCLCARFQ++P+
Sbjct: 1574 DQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPR 1610
>gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533180|ref|NP_920892.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22748369|gb|AAN05371.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1299
Score = 180 bits (457), Expect = 1e-43
Identities = 95/157 (60%), Positives = 109/157 (68%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L+ DFK G+VDTTLF + V QIYVDDIIFGSTN CKEF M EFE SM+
Sbjct: 954 LLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMI 1013
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GEL FFL +QI Q KDG ++ QTKY K+LLK+F LED K + TPM ++ G V
Sbjct: 1014 GELSFFLRLQIKQLKDGTFLSQTKYIKDLLKRFGLEDAKPIKTPMVTNGHLDLDEGGKPV 1073
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
D KLY MIGSLLYLTASRPDI+FSVC+CARFQ PK
Sbjct: 1074 DLKLYHSMIGSLLYLTASRPDIMFSVCMCARFQVAPK 1110
>gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37530636|ref|NP_919620.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|20042890|gb|AAM08718.1| Putative gag-pol polyprotein
[Oryza sativa]
Length = 1627
Score = 180 bits (457), Expect = 1e-43
Identities = 94/157 (59%), Positives = 110/157 (69%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L+ FK G+VDTTLF + V QIYVDDIIFGSTN CKEF M EFE SM+
Sbjct: 1110 LLSKYFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGNMMSREFEMSMI 1169
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
GEL FFLG+QI Q KDG +V QTKY K+LLK+F LED K + TP+ ++ G V
Sbjct: 1170 GELSFFLGVQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKSIKTPIATNGHLDLDEGGKPV 1229
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
D KLY MIGSLL+LTASRPDI+FSVC+CARFQ+ PK
Sbjct: 1230 DLKLYRSMIGSLLFLTASRPDIIFSVCMCARFQAAPK 1266
>ref|XP_468915.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28209440|gb|AAO37458.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|41393202|gb|AAS01925.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 374
Score = 179 bits (455), Expect = 2e-43
Identities = 90/156 (57%), Positives = 111/156 (70%)
Query: 299 IKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMMG 358
+KN F+ G+ DTTLF +K + + QIYVDDIIFGSTNAS C+EFS M FE SMM
Sbjct: 151 LKNGFEIGKGDTTLFTKKIKSDLFICQIYVDDIIFGSTNASFCEEFSSIMTKRFEMSMMD 210
Query: 359 ELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKVD 418
EL FFLG+Q+ Q ++G + QTKY K++LKKF++ED K + TPM D G VD
Sbjct: 211 ELTFFLGLQVKQAQEGTCISQTKYVKDILKKFEMEDAKPIRTPMPINGHLDLNDNGKCVD 270
Query: 419 QKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
QK+Y MIGSLLYL ASRPDI+ SVC+CARFQ+ PK
Sbjct: 271 QKVYRSMIGSLLYLCASRPDIMLSVCMCARFQAEPK 306
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.352 0.155 0.517
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 882,407,130
Number of Sequences: 2540612
Number of extensions: 31961324
Number of successful extensions: 101616
Number of sequences better than 10.0: 700
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 100294
Number of HSP's gapped (non-prelim): 830
length of query: 642
length of database: 863,360,394
effective HSP length: 134
effective length of query: 508
effective length of database: 522,918,386
effective search space: 265642540088
effective search space used: 265642540088
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 78 (34.7 bits)
Medicago: description of AC146818.6