BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.3 - phase: 0 /pseudo
(1604 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays] 647 0.0
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays] 646 0.0
gb|AAD20307.1| copia-type pol polyprotein [Zea mays] 645 0.0
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 636 e-180
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica... 635 e-180
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 635 e-180
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 635 e-180
ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica... 631 e-179
gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cult... 630 e-178
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein... 627 e-178
gb|AAL66759.1| putative pol protein [Zea mays] 620 e-176
emb|CAE04884.2| OSJNBa0042I15.6 [Oryza sativa (japonica cultivar... 618 e-175
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 617 e-175
gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cult... 613 e-173
gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cult... 613 e-173
gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-... 606 e-171
gb|AAL35396.1| Opie2a pol [Zea mays] 606 e-171
ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (jap... 604 e-171
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays] 604 e-171
gb|AAL35398.1| Opie2 pol [Zea mays] 603 e-170
>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
Length = 1892
Score = 647 bits (1669), Expect = 0.0
Identities = 323/593 (54%), Positives = 420/593 (70%), Gaps = 14/593 (2%)
Query: 1017 EAEITPEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKH-------KSSHPEELII 1069
E E + E N E +P N+ + + +P+ H + HP + I+
Sbjct: 1296 EDEAQNDEEQNQEVKPPQDKSNDQGGDTNDQEKEDEEEPRPPHPRVHQAIQRDHPVDTIL 1355
Query: 1070 GSKDSPRRTRS---HFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVW 1126
G TRS HF + S + S IE VEEAL D W++AMQEELN F RN+VW
Sbjct: 1356 GDIHKGVTTRSRVAHFCEHYSFV---SSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVW 1412
Query: 1127 DLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEA 1186
LVP+P Q N++GTKWVFRNK +E G VTR KARLVA+GYSQ E +D+ ET+APVARLE+
Sbjct: 1413 HLVPRPNQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFDETYAPVARLES 1471
Query: 1187 IRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGL 1246
IR+LL+YA HG LYQMDVK AFLNG I+EEVYV+QPPGFED ++P+HVY+L K++YGL
Sbjct: 1472 IRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKALYGL 1531
Query: 1247 KQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKD 1306
KQAP+AWY+ L +FLI N F+ G+ D TLF +TL+ D+ + QIYVDDIIFGSTN S C++
Sbjct: 1532 KQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEE 1591
Query: 1307 FSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMH 1366
FS++M +F+MSMMGELK+FLG Q+ Q +EG ++ QTKYT+++L KF ++D K + TPM
Sbjct: 1592 FSRIMTQKFEMSMMGELKYFLGFQVKQLREGTFISQTKYTQDILAKFGMKDAKPIKTPMG 1651
Query: 1367 PTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKR 1426
L + G VDQK+YR MIGSLLYL ASRPDI+ SVC+CARFQSD +ESHLTAVKR
Sbjct: 1652 TNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKR 1711
Query: 1427 IFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQ 1486
I RYL T GL Y + + LIG+ DAD+AG +I RKSTSG CQFLG +L+SWASK+Q
Sbjct: 1712 ILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQ 1771
Query: 1487 ATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSR 1546
++A+STAEA YI+A CC QLLWM+ L DY +P+ CDN +AI ++ NP+ HSR
Sbjct: 1772 NSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPVEHSR 1831
Query: 1547 AKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
KHI I++HF+R + QKG ++I +I+T+ Q ADIFTKPL + F ++ LN+
Sbjct: 1832 TKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQSFTRLRHELNI 1884
Score = 72.0 bits (175), Expect = 2e-10
Identities = 92/368 (25%), Positives = 158/368 (42%), Gaps = 42/368 (11%)
Query: 10 FRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSK-ILRSLPSRWRPKVTAIEEAKD 68
F ++ E ++MY+R +TLV ++ L + V K ILR+L +V I
Sbjct: 246 FHLRQGEEPQDMYNRLKTLVNQVRNLGSTKWDDHEVVKVILRALIFLNPTQVQLIRGNPR 305
Query: 69 LNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGD 128
++ E+++ + E + + SKK + PS + A+KA+E ++E
Sbjct: 306 YPLMTPEEVIGNFVSFECMI---KGSKKINELDEPSTSEAQPV--AFKATEEKKEE---S 357
Query: 129 SDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDL 188
+ Q + + L N+ L K + + K+ K+ K +K C+ C KPGHFIA CP +
Sbjct: 358 TPSRQPIDASKLDNEEMALIIKSFRQILKQRKGKDYKPRSKKVCYKCGKPGHFIAKCP-M 416
Query: 189 QKEKYKVKSKKSSFSSSKFRKQIKKSLMATWEDLDS-ESGSDKEEADDDAKAAMR----- 242
+ + KK K + K + DS ES SD + +D A A+
Sbjct: 417 SSDSDRGDDKKGRRKEKKRYYKKKGGDAHVCREWDSDESSSDSSDDEDAANIAVTKGLLF 476
Query: 243 -------LVATVSSEAVS-------EAESDSEDENE------VYSKIPRQELVDSLKELL 282
L+A + V E SD +D+NE +++ + E + L EL+
Sbjct: 477 PNVGHKCLMAKDGKKKVKSKSSTKYETSSDEDDKNEEDNLRILFANL-NMEQKEKLNELI 535
Query: 283 SLFEHRTNELTDLKEKYVDLMKQQKTTLLELKASEEEL--KGFNLISTTYE--DRLKSLC 338
S H ++L D +E ++ ++ + A E E K + +ST +E D L++
Sbjct: 536 SAI-HEKDDLLDSQEDFLIKENKKHVKVKNAYALEREKCEKLSSELSTCHEILDNLRNEN 594
Query: 339 QKLQEKCD 346
L K D
Sbjct: 595 ANLLAKVD 602
>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
Length = 1760
Score = 646 bits (1666), Expect = 0.0
Identities = 325/594 (54%), Positives = 427/594 (71%), Gaps = 11/594 (1%)
Query: 1013 ESSPEAEITP-EAESNSEAEPSSIVQNESASE-DFQDNTQQVIQPKFKH--KSSHPEELI 1068
++ EA++ E ++N + I Q A++ D +D Q+ P+ + HP + I
Sbjct: 1163 QNEDEAQVDEVEDQANEPPQDDGIDQGGDANDQDKEDEEQRPPHPRVHQAIQQDHPVDTI 1222
Query: 1069 IGSKDSPRRTRS---HFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDV 1125
+G TRS HF + S + S IE VEEAL D W++AMQEELN F RN+V
Sbjct: 1223 LGDIHKGVTTRSRVAHFCEHYSFV---SSIEPHRVEEALQDSDWVVAMQEELNNFTRNEV 1279
Query: 1126 WDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLE 1185
W LVP+P Q N++GTKWVFRNK +E G VTR KARLVA+GYSQ E +D+ ET+APVARLE
Sbjct: 1280 WHLVPRPNQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLE 1338
Query: 1186 AIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYG 1245
+IR+LL+YA HG LYQMDVK AFLNG I+EEVYV+QPPGFED ++P+HVYKL K++YG
Sbjct: 1339 SIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSKALYG 1398
Query: 1246 LKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCK 1305
LKQAP+AWY+ L +FLI N F+ G+ D TLF +TL+ D+ + QIYVDDIIFGSTN S C+
Sbjct: 1399 LKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCE 1458
Query: 1306 DFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPM 1365
+FS++M +F+MSMMGELK+FLG Q+ Q +EG ++ QTKYT+++L KF ++D K + TPM
Sbjct: 1459 EFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILSKFGMKDAKPIKTPM 1518
Query: 1366 HPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVK 1425
L + G VDQK+YR MIGSLLYL ASRPDI+ SVC+CARFQSD +ESHLTAVK
Sbjct: 1519 GTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVK 1578
Query: 1426 RIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKR 1485
RI RYL T GL Y + + L+G+ DAD+AG +I RKSTSG CQFLG +L+SWASK+
Sbjct: 1579 RILRYLAYTPKFGLWYPRGSTFDLLGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKK 1638
Query: 1486 QATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHS 1545
Q ++A+STAEA YI+A CC QLLWM+ L DY +P+ CDN +AI ++ NP+ HS
Sbjct: 1639 QNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPVEHS 1698
Query: 1546 RAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
R KHI I++HF+R + QKG ++I +I+T+ Q ADIFTKPL + F ++ LN+
Sbjct: 1699 RTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQTFTKLRHELNI 1752
Score = 72.4 bits (176), Expect = 1e-10
Identities = 92/354 (25%), Positives = 153/354 (42%), Gaps = 39/354 (11%)
Query: 10 FRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDH--VSKILRSLPSRWRPKVTAIEEAK 67
FR++ E + MY+R +TLV ++ L S DH V ILRSL +V I
Sbjct: 181 FRLRKGEEPQHMYNRLKTLVNQVRNLG-SVKWDDHEMVKVILRSLIFLNPTQVQLIRGNP 239
Query: 68 DLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSK-AYKASESEEESPD 126
++ E+++ + E + E S+K + TS++ A+KA+E ++E
Sbjct: 240 RYTKMTPEEVIGNFVSFECMI---EGSRKINEL---DDATTSEAQPVAFKATEEKKEEA- 292
Query: 127 GDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCP 186
+ Q + + L N+ L K + + K+ K+ K +K C+ C KPGHFIA CP
Sbjct: 293 --TPSRQPIDASKLDNEEMALVIKSFRQILKQRRGKDYKSRSKKVCYKCGKPGHFIAKCP 350
Query: 187 DLQKEKYKVKSKKSSFSSSKFRKQIKKS-----LMATWEDLDSES-GSDKEEADDDAKAA 240
+ + + KK K K KK + W+ DS S SD E+A + A
Sbjct: 351 -ISSDSDRGDDKKGRRKEKK--KYYKKKGGDAHVCREWDSDDSSSDSSDDEDAANIAVTK 407
Query: 241 MRLVATV------SSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLF----EHRTN 290
L V + + + +S S + E S + D+L+ L + + + N
Sbjct: 408 GLLFPNVGHKCLMAKDGKKKVKSKSSTKYESSSDDNASDEEDNLRSLFANLNIAQKEKLN 467
Query: 291 ELTDLKEKYVDLMKQQKTTLLELKASEEELKGFNLISTTYEDRLKSLCQKLQEK 344
EL + DL+ Q+ L +K +++ +K N S E C+KL +
Sbjct: 468 ELVSAIHEKDDLLDSQEDLL--IKENKKHVKVKNAYSLQVEK-----CEKLSSE 514
>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
Length = 1063
Score = 645 bits (1663), Expect = 0.0
Identities = 324/593 (54%), Positives = 420/593 (70%), Gaps = 14/593 (2%)
Query: 1017 EAEITPEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKH-------KSSHPEELII 1069
E E + E N E EP N+ + + +P+ H + HP + I+
Sbjct: 467 EDEAQNDEEQNQEDEPPQDDSNDQGGDTNDQEKEDEEEPRPPHPRVHQAIQRDHPVDTIL 526
Query: 1070 GSKDSPRRTRS---HFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVW 1126
G TRS HF + S + S IE VEEAL D W++AMQEELN F RN+VW
Sbjct: 527 GDIHKGVTTRSRVAHFCEHYSFV---SSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVW 583
Query: 1127 DLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEA 1186
LVP+P Q N++GTKWVFRNK +E G VTR KARLVA+GYSQ E +D+ ET+APVARLE+
Sbjct: 584 HLVPRPNQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLES 642
Query: 1187 IRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGL 1246
IR+LL+YA HG LYQMDVK AFLNG I+EEVYV+QPPGFED ++P+HVY+L K++YGL
Sbjct: 643 IRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKALYGL 702
Query: 1247 KQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKD 1306
KQAP+AWY+ L +FLI N F+ G+ D TLF +TL+ D+ + QIYVDDIIFGSTN S C++
Sbjct: 703 KQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNKSTCEE 762
Query: 1307 FSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMH 1366
FS++M +F+MSMMGELK+FLG Q+ Q +EG ++ QTKYT+++L KF ++D K + TPM
Sbjct: 763 FSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFICQTKYTQDILTKFGMKDAKPIKTPMG 822
Query: 1367 PTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKR 1426
L + G VDQK+YR MIGSLLYL ASRPDI+ SVC+CARFQSD +ESHLTAVKR
Sbjct: 823 TNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKR 882
Query: 1427 IFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQ 1486
I RYL T GL Y + + LIG+ DAD+AG +I RKSTSG CQFLG +L+SWASK+Q
Sbjct: 883 ILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQ 942
Query: 1487 ATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSR 1546
++A+STAEA YI+A CC QLLWM+ L DY +P+ CDN +AI ++ NP+ HSR
Sbjct: 943 NSVALSTAEAEYIAAGHCCAQLLWMRQTLLDYGYKLTKVPLLCDNESAIKMADNPVEHSR 1002
Query: 1547 AKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
KHI I++HF+R + QKG ++I +I+T+ Q ADIFTKPL + F ++ LN+
Sbjct: 1003 TKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQSFTRLRHELNI 1055
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1969
Score = 636 bits (1640), Expect = e-180
Identities = 320/590 (54%), Positives = 422/590 (71%), Gaps = 8/590 (1%)
Query: 1012 VESSPEAEIT--PEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELII 1069
++S+P + T P S S P++ + SA+E+ T P+ P+ +I
Sbjct: 1205 LDSTPPVQETGSPSTTSPSGDAPTT---SSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIG 1261
Query: 1070 GSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLV 1129
G + R RS+ + + + E K V ALSD+ W+ AM EEL F+RN VW LV
Sbjct: 1262 GLGERVTRNRSYELVNSAFV---ASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLV 1318
Query: 1130 PKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRL 1189
P N+IGTKWVF+NKL E G + R KARLVAQG++Q E +D+ ETFAPVARLEAIR+
Sbjct: 1319 EPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRI 1378
Query: 1190 LLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQA 1249
LL++A + G L+QMDVK AFLNGVIEEEVYVKQPPGFE+ K P+HV+KL+K++YGLKQA
Sbjct: 1379 LLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQA 1438
Query: 1250 PKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSK 1309
P+AWY+RL FL++N FE G VD TLF D L+VQIYVDDIIFG ++ +L FS
Sbjct: 1439 PRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSD 1498
Query: 1310 LMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTC 1369
+M EF+MSMMGEL FFLG+QI Q+KEG++VHQTKY+KELLKKF + DCK + TPM T
Sbjct: 1499 VMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTS 1558
Query: 1370 TLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFR 1429
+L ++ G VDQ+ YR MIGSLLYLTASRPDI FSVCLCARFQ+ R SH AVKRIFR
Sbjct: 1559 SLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFR 1618
Query: 1430 YLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATI 1489
Y+K T G+ Y S + F DAD+AG +I+RKSTSG C FLG +L+SW+S++Q+++
Sbjct: 1619 YIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSV 1678
Query: 1490 AMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSRAKH 1549
A STAEA Y++AAS C+Q+LWM L+DY ++ + +P+ CDNT+AI ++KNP+ HSR KH
Sbjct: 1679 AQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKH 1738
Query: 1550 IEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
IEI++HF+R V+KG + ++F+++E Q ADIFTKPL RF+F++ L +
Sbjct: 1739 IEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1788
Score = 87.0 bits (214), Expect = 5e-15
Identities = 60/232 (25%), Positives = 101/232 (42%), Gaps = 4/232 (1%)
Query: 6 QYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLP-SRWRPKVTAIE 64
+Y+ F M ESI+ + RF ++ L+ + K + +D+ +L L W KVT+I
Sbjct: 115 EYQRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSIT 174
Query: 65 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEES 124
E+ L+ L+++ L S LK HEM + + K S ++ G TS + A+ +
Sbjct: 175 ESAPLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVYGGFSLAA 234
Query: 125 PDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIAD 184
++E + + L ARK + K K + CF C +P H +
Sbjct: 235 LHSVTEEQLE---KIPEDDLALFARKFSRAYKNVRDRKRGKTNEPFVCFECGEPNHKRVN 291
Query: 185 CPDLQKEKYKVKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDD 236
CP L+K+ K K + +KK++ L+ SD + DDD
Sbjct: 292 CPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSDDDD 343
>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1410
Score = 635 bits (1638), Expect = e-180
Identities = 320/590 (54%), Positives = 421/590 (71%), Gaps = 8/590 (1%)
Query: 1012 VESSPEAEIT--PEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELII 1069
++S+P + T P S S P++ + SA+E+ T P+ P+ +I
Sbjct: 820 LDSTPPVQETGSPSTTSPSGDAPTT---SSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIG 876
Query: 1070 GSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLV 1129
G + R RS+ + + + E K V ALSD+ W+ AM EEL F+RN VW LV
Sbjct: 877 GLGERVTRNRSYDLVNSAFV---ASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLV 933
Query: 1130 PKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRL 1189
P N+IGTKWVF+NKL E G + R KARLVAQG++Q E +D+ ETFAPVARLEAIR+
Sbjct: 934 EPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRI 993
Query: 1190 LLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQA 1249
LL++A + G L+QMDVK AFLNGVIEEEVYVKQPPGFE+ K P+HV+KL K++YGLKQA
Sbjct: 994 LLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQA 1053
Query: 1250 PKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSK 1309
P+AWY+RL FL++N FE G VD TLF D L+VQIYVDDIIFG ++ +L FS
Sbjct: 1054 PRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSD 1113
Query: 1310 LMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTC 1369
+M EF+MSMMGEL FFLG+QI Q+KEG++VHQTKY+KELLKKF + DCK + TPM T
Sbjct: 1114 VMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTS 1173
Query: 1370 TLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFR 1429
+L ++ G VDQ+ YR MIGSLLYLTASRPDI FSVCLCARFQ+ R SH AVKRIFR
Sbjct: 1174 SLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFR 1233
Query: 1430 YLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATI 1489
Y+K T G+ Y S + F DAD+AG +I+RKSTSG C FLG +L+SW+S++Q+++
Sbjct: 1234 YIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSV 1293
Query: 1490 AMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSRAKH 1549
A STAEA Y++AAS C+Q+LWM L+DY ++ + +P+ CDNT+AI ++KNP+ HSR KH
Sbjct: 1294 AQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKH 1353
Query: 1550 IEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
IEI++HF+R V+KG + ++F+++E Q ADIFTKPL RF+F++ L +
Sbjct: 1354 IEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1403
Score = 89.0 bits (219), Expect = 1e-15
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 4/232 (1%)
Query: 6 QYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLP-SRWRPKVTAIE 64
+Y+ F M ESI+ + RF +V L+ + K + +D+ +L L W KVT+I
Sbjct: 92 EYQRFEMHPGESIDSYFKRFGEIVSKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSIT 151
Query: 65 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEES 124
E+ L+ L+++ L S LK HEM + + K S ++ G TS + A+ +
Sbjct: 152 ESAPLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVCGGFSLAA 211
Query: 125 PDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIAD 184
++E + + L ARK + + K K + CF C +P H +
Sbjct: 212 LHSVTEEQLE---KIPEDDLALFARKFSRAYKNVRNKKRGKTNEPFVCFECGEPNHIRVN 268
Query: 185 CPDLQKEKYKVKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDD 236
CP L+K+ K K +KK++ L+ SD + DDD
Sbjct: 269 CPKLKKKSDKTTKKPEGQGRKGKNDLMKKAIHKVLAALEEVQLSDIDSDDDD 320
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 635 bits (1637), Expect = e-180
Identities = 319/590 (54%), Positives = 422/590 (71%), Gaps = 8/590 (1%)
Query: 1012 VESSPEAEIT--PEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELII 1069
++S+P + T P S S P++ + SA+E+ T P+ P+ +I
Sbjct: 1205 LDSTPPVQETGSPSTTSPSGDAPTT---SSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIG 1261
Query: 1070 GSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLV 1129
G + R RS+ + + + E K V ALSD+ W+ AM EEL F+RN VW LV
Sbjct: 1262 GLGERVTRNRSYELVNSAFV---ASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLV 1318
Query: 1130 PKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRL 1189
P N+IGTKWVF+NKL E G + R KARLVAQG++Q E +D+ ETFAPVARLEAIR+
Sbjct: 1319 EPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRI 1378
Query: 1190 LLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQA 1249
LL++A + G L+QMDVK AFLNGVIEEEVYVKQPPGFE+ K P+HV+KL+K++YGLKQA
Sbjct: 1379 LLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQA 1438
Query: 1250 PKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSK 1309
P+AWY+RL FL++N FE G VD TLF D L+VQIYVDDIIFG ++ +L FS
Sbjct: 1439 PRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSD 1498
Query: 1310 LMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTC 1369
+M EF+MSMMGEL FFLG+QI Q+KEG++VHQTKY+KELLKKF + DCK + TPM T
Sbjct: 1499 VMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTS 1558
Query: 1370 TLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFR 1429
+L ++ G VDQ+ YR MIGSLLYLTASRPDI FSVCLCARFQ+ R SH AVKR+FR
Sbjct: 1559 SLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFR 1618
Query: 1430 YLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATI 1489
Y+K T G+ Y S + F DAD+AG +I+RKSTSG C FLG +L+SW+S++Q+++
Sbjct: 1619 YIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSV 1678
Query: 1490 AMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSRAKH 1549
A STAEA Y++AAS C+Q+LWM L+DY ++ + +P+ CDNT+AI ++KNP+ HSR KH
Sbjct: 1679 AQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKH 1738
Query: 1550 IEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
IEI++HF+R V+KG + ++F+++E Q ADIFTKPL RF+F++ L +
Sbjct: 1739 IEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1788
Score = 87.0 bits (214), Expect = 5e-15
Identities = 60/232 (25%), Positives = 101/232 (42%), Gaps = 4/232 (1%)
Query: 6 QYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLP-SRWRPKVTAIE 64
+Y+ F M ESI+ + RF ++ L+ + K + +D+ +L L W KVT+I
Sbjct: 115 EYQRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSIT 174
Query: 65 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEES 124
E+ L+ L+++ L S LK HEM + + K S ++ G TS + A+ +
Sbjct: 175 ESAPLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVYGGFSLAA 234
Query: 125 PDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIAD 184
++E + + L ARK + K K + CF C +P H +
Sbjct: 235 LHSVTEEQLE---KIPEDDLALFARKFSRAYKNVRDRKRGKTNEPFVCFECGEPNHKRVN 291
Query: 185 CPDLQKEKYKVKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDD 236
CP L+K+ K K + +KK++ L+ SD + DDD
Sbjct: 292 CPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSDDDD 343
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1877
Score = 635 bits (1637), Expect = e-180
Identities = 319/590 (54%), Positives = 422/590 (71%), Gaps = 8/590 (1%)
Query: 1012 VESSPEAEIT--PEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELII 1069
++S+P + T P S S P++ + SA+E+ T P+ P+ +I
Sbjct: 1287 LDSTPPVQETGSPSTTSPSGDAPTT---SSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIG 1343
Query: 1070 GSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLV 1129
G + R RS+ + + + E K V ALSD+ W+ AM EEL F+RN VW LV
Sbjct: 1344 GLGERVTRNRSYELVNSAFV---ASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLV 1400
Query: 1130 PKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRL 1189
P N+IGTKWVF+NKL E G + R KARLVAQG++Q E +D+ ETFAPVARLEAIR+
Sbjct: 1401 EPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRI 1460
Query: 1190 LLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQA 1249
LL++A + G L+QMDVK AFLNGVIEEEVYVKQPPGFE+ K P+HV+KL+K++YGLKQA
Sbjct: 1461 LLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQA 1520
Query: 1250 PKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSK 1309
P+AWY+RL FL++N FE G VD TLF D L+VQIYVDDIIFG ++ +L FS
Sbjct: 1521 PRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSD 1580
Query: 1310 LMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTC 1369
+M EF+MSMMGEL FFLG+QI Q+KEG++VHQTKY+KELLKKF + DCK + TPM T
Sbjct: 1581 VMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTS 1640
Query: 1370 TLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFR 1429
+L ++ G VDQ+ YR MIGSLLYLTASRPDI FSVCLCARFQ+ R SH AVKR+FR
Sbjct: 1641 SLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFR 1700
Query: 1430 YLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATI 1489
Y+K T G+ Y S + F DAD+AG +I+RKSTSG C FLG +L+SW+S++Q+++
Sbjct: 1701 YIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSV 1760
Query: 1490 AMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSRAKH 1549
A STAEA Y++AAS C+Q+LWM L+DY ++ + +P+ CDNT+AI ++KNP+ HSR KH
Sbjct: 1761 AQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKH 1820
Query: 1550 IEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
IEI++HF+R V+KG + ++F+++E Q ADIFTKPL RF+F++ L +
Sbjct: 1821 IEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1870
Score = 87.0 bits (214), Expect = 5e-15
Identities = 60/232 (25%), Positives = 101/232 (42%), Gaps = 4/232 (1%)
Query: 6 QYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLP-SRWRPKVTAIE 64
+Y+ F M ESI+ + RF ++ L+ + K + +D+ +L L W KVT+I
Sbjct: 115 EYQRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSIT 174
Query: 65 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEES 124
E+ L+ L+++ L S LK HEM + + K S ++ G TS + A+ +
Sbjct: 175 ESAPLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVYGGFSLAA 234
Query: 125 PDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIAD 184
++E + + L ARK + K K + CF C +P H +
Sbjct: 235 LHSVTEEQLE---KIPEDDLALFARKFSRAYKNVRDRKRGKTNEPFVCFECGEPNHKRVN 291
Query: 185 CPDLQKEKYKVKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDD 236
CP L+K+ K K + +KK++ L+ SD + DDD
Sbjct: 292 CPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSDDDD 343
>ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 940
Score = 631 bits (1627), Expect = e-179
Identities = 322/593 (54%), Positives = 419/593 (70%), Gaps = 7/593 (1%)
Query: 1010 QEVESSPEAEITPEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHKS---SHPEE 1066
Q SS + E ++N + SS+ Q E E ++ + P+ H+S HP +
Sbjct: 345 QGASSSTQVEPPTSTQAN-DPSTSSLDQGEEG-EQVPPSSINLAHPRI-HQSIQRDHPTD 401
Query: 1067 LIIGSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVW 1126
I+G + TRSH +S +E VEEAL+D W++AMQEELN F RN+VW
Sbjct: 402 NILGDINKGVSTRSHIANFCEHYSFVSSLEPLRVEEALNDPDWVMAMQEELNNFTRNEVW 461
Query: 1127 DLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEA 1186
LV + Q N+IGTKW+FRNK +E G V R KARLVAQG++Q E +D+ ETFAPVARLE+
Sbjct: 462 TLVERSRQ-NVIGTKWIFRNKQDEAGVVIRNKARLVAQGFTQIEGLDFGETFAPVARLES 520
Query: 1187 IRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGL 1246
IR+LL++A N LYQMDVK AFLNG+I E VYV+QPPGF+D K+P+HVYKL K++Y L
Sbjct: 521 IRILLTFATNLNFKLYQMDVKSAFLNGLINELVYVEQPPGFKDPKYPNHVYKLHKALYEL 580
Query: 1247 KQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKD 1306
KQAP+AWY+ L NFL+KN FE G+ D+TLF + DI + QIYVDDIIFGSTN S ++
Sbjct: 581 KQAPRAWYECLRNFLVKNGFEIGKADSTLFTKRHDNDIFVCQIYVDDIIFGSTNKSFSEE 640
Query: 1307 FSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMH 1366
FS++M F+MSMMGELKFFLG+QI Q KEG ++ QTKY K++LKKF +E+ K ++TPM
Sbjct: 641 FSRMMTKRFEMSMMGELKFFLGLQIKQLKEGTFICQTKYLKDMLKKFGMENAKPIHTPMP 700
Query: 1367 PTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKR 1426
L + G VDQK+YR +IGSLLYL ASRPDI+ SVC+CARFQ+ +E HL AVKR
Sbjct: 701 SNGHLDLNEQGKDVDQKVYRSIIGSLLYLCASRPDIMLSVCMCARFQAAPKECHLVAVKR 760
Query: 1427 IFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQ 1486
I RYL T NLGL Y K + LIG+ DADYAG +++RKSTSG CQFLG +L+SW+SK+Q
Sbjct: 761 ILRYLVHTPNLGLWYPKGARFDLIGYADADYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQ 820
Query: 1487 ATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSR 1546
++A+STAEA YIS SCC QL+WMK L DY +N + IP+ CDN +AI ++ NP+ HSR
Sbjct: 821 NSVALSTAEAEYISTGSCCAQLIWMKQTLRDYGLNVSKIPLLCDNESAIKIANNPVQHSR 880
Query: 1547 AKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
KHI+I+HHF+R + +G +DIQ + + Q ADIFTKPL RF ++ LN+
Sbjct: 881 TKHIDIRHHFLRDHSTRGDIDIQHVRIDKQLADIFTKPLDEARFCELRSELNI 933
>gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1799
Score = 630 bits (1624), Expect = e-178
Identities = 319/590 (54%), Positives = 417/590 (70%), Gaps = 8/590 (1%)
Query: 1015 SPEAEITP---EAESNSEAEPS--SIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELII 1069
SP + TP E S PS + + SA+E+ T P+ P+ +I
Sbjct: 1206 SPPLDSTPPVQETGSPLTTSPSGDAPTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIG 1265
Query: 1070 GSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLV 1129
G + R RS+ + + + E K V ALSD+ W+ AM EEL F+RN VW LV
Sbjct: 1266 GLGERVTRNRSYELVNSAFV---ASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLV 1322
Query: 1130 PKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRL 1189
P ++IGTKWVF+NKL E G + R KARLVAQG++Q E +D+ ETFAPVARLEAIR+
Sbjct: 1323 EPPLGFSVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRI 1382
Query: 1190 LLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQA 1249
LL++A + G L+QMDVK AFLNGVIEEEVYVKQPPGFE+ K P+HV+KL K++YGLKQA
Sbjct: 1383 LLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQA 1442
Query: 1250 PKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSK 1309
P+AWY+RL FL++N FE G VD TLF D L+VQIYVDDIIFG ++ +L F
Sbjct: 1443 PRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFFD 1502
Query: 1310 LMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTC 1369
+M EF+MSMMGEL FFLG+QI Q+KEG++VHQTKY+KELLKKF + DCK + TPM T
Sbjct: 1503 VMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTS 1562
Query: 1370 TLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFR 1429
+L ++ G VDQ+ YR MIGSLLYLTASRPDI FSVCLCARFQ+ R SH AVKRIFR
Sbjct: 1563 SLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFR 1622
Query: 1430 YLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATI 1489
Y+K T G+ Y S + F DAD+AG +I+RKSTSG C FLG +L+SW+S++Q+++
Sbjct: 1623 YIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSV 1682
Query: 1490 AMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSRAKH 1549
A STAEA Y++AAS C+Q+LWM L+DY ++ + +P+ CDNT+AI ++KNP+ HSR KH
Sbjct: 1683 AQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKH 1742
Query: 1550 IEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
IEI++HF+R V+KG + ++F+++E Q ADIFTKPL RF+F++ L +
Sbjct: 1743 IEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1792
Score = 89.4 bits (220), Expect = 9e-16
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 4/232 (1%)
Query: 6 QYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLP-SRWRPKVTAIE 64
+Y+ F M ESI+ + RF +V L+ + K + +D+ +L L W KVT+I
Sbjct: 112 EYQRFEMHPGESIDSYFKRFGEIVSKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSIT 171
Query: 65 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEES 124
E+ L+ L+++ L S LK HEM + + K S ++ G TS + A+ +
Sbjct: 172 ESAPLSELTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVCGGFSLAA 231
Query: 125 PDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIAD 184
++E + + L ARK + K K + CF C +P H +
Sbjct: 232 LHSVTEEQLE---KIPEDDLALFARKFSRAYKNVRDRKRGKTNEPFVCFECGEPNHIRVN 288
Query: 185 CPDLQKEKYKVKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDD 236
CP L+K+ K K + +KK++ L+ SD + DDD
Sbjct: 289 CPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSDDDD 340
>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
retrotransposon Opie-2
Length = 1068
Score = 627 bits (1617), Expect = e-178
Identities = 310/591 (52%), Positives = 411/591 (69%), Gaps = 5/591 (0%)
Query: 1013 ESSPEAEITPEAESNSEAEPSSIVQNESASED--FQDNTQQV--IQPKFKHKSSHPEELI 1068
+ SP + P + + + + A +D ++ Q Q + + HP + I
Sbjct: 472 QPSPSTMVHPPTQDDEQVHQQEVCDQGGAQDDHVLEEEAQPAPPTQVRAMIQRDHPVDQI 531
Query: 1069 IGSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDL 1128
+G TRS +S IE VEEAL D W+LAMQEELN F+RN+VW L
Sbjct: 532 LGDISKGVTTRSRLVNFCEHNSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWTL 591
Query: 1129 VPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIR 1188
VP+P Q N++GTKWVFRNK +E+G VTR KARLVA+GY+Q +D+ ETFAPVARLE+IR
Sbjct: 592 VPRPKQ-NVVGTKWVFRNKQDERGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESIR 650
Query: 1189 LLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQ 1248
+LL+YA +H LYQMDVK AFLNG I+EEVYV+QPPGFED ++PDHV KL K++YGLKQ
Sbjct: 651 ILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQ 710
Query: 1249 APKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFS 1308
AP+AWY+ L +FLI N F+ G+ D TLF +T D+ + QIYVDDIIFGSTN C++FS
Sbjct: 711 APRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFS 770
Query: 1309 KLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPT 1368
++M +F+MSMMGEL +FLG Q+ Q K+G ++ QTKYT++LLK+F ++D K TPM
Sbjct: 771 RVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTD 830
Query: 1369 CTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIF 1428
G VDQK YR MIGSLLYL ASRPDI+ SVC+CARFQSD +E HL AVKRI
Sbjct: 831 GHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRIL 890
Query: 1429 RYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQAT 1488
RYL T GL Y K + L+G+ D+DYAG +++RKSTSG CQFLG +L+SW SK+Q +
Sbjct: 891 RYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTS 950
Query: 1489 IAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSRAK 1548
+A+STAEA Y++A CC QLLWM+ L D+ N + +P+ CDN +AI +++NP+ HSR K
Sbjct: 951 VALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHSRTK 1010
Query: 1549 HIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
HI+I+HHF+R + QKG +++ + TE+Q ADIFTKPL + F ++ LN+
Sbjct: 1011 HIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1061
>gb|AAL66759.1| putative pol protein [Zea mays]
Length = 1657
Score = 620 bits (1600), Expect = e-176
Identities = 308/591 (52%), Positives = 408/591 (68%), Gaps = 5/591 (0%)
Query: 1013 ESSPEAEITPEAESNSEAEPSSIVQNESASED--FQDNTQQV--IQPKFKHKSSHPEELI 1068
+ S + P E + + + A +D ++ Q Q + + HP + I
Sbjct: 1061 QPSSSTMVHPPTEDDEQVPQVEALDQGGAQDDQVMEEEAQPAPPTQVRAMIQRDHPVDQI 1120
Query: 1069 IGSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDL 1128
+G TRS +S IE VEEAL D W+LAMQEELN F+RN+VW L
Sbjct: 1121 LGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWTL 1180
Query: 1129 VPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIR 1188
VP+P Q N++GTKWVFRNK +E G VTR KARLVA+GY+Q +D+ ETFAPVARLE+IR
Sbjct: 1181 VPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESIR 1239
Query: 1189 LLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQ 1248
+LL+YA +H LYQMDVK AFLNG I+EEVYV+QPPGFED ++PDHV KL K++YGLKQ
Sbjct: 1240 ILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQ 1299
Query: 1249 APKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFS 1308
AP+AWY+ L +FL+ N F+ G+ D TLF +T D+ + QIYVDDIIFGSTN C++FS
Sbjct: 1300 APRAWYECLRDFLLANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFS 1359
Query: 1309 KLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPT 1368
++M +F+MSMMGEL +FLG Q+ Q K+G ++ QTKYT++LLK+F ++D K TPM
Sbjct: 1360 RVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTD 1419
Query: 1369 CTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIF 1428
G VDQK YR MIGSLLYL ASRPDI+ SVC+CARFQSD +E HL AVKRI
Sbjct: 1420 GHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRIL 1479
Query: 1429 RYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQAT 1488
RYL T GL Y K + L+G+ D+DYAG +++RKSTSG CQFLG +L+SW SK+Q +
Sbjct: 1480 RYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTS 1539
Query: 1489 IAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSRAK 1548
+A+STAEA Y++A CC QLLWM+ L D+ N + +P+ CDN + I +++NP+ HSR K
Sbjct: 1540 VALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESDIRMAENPVEHSRTK 1599
Query: 1549 HIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
HI+I+HHF+R + QKG +++ + TE+Q ADIFTKPL + F ++ LN+
Sbjct: 1600 HIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1650
Score = 79.0 bits (193), Expect = 1e-12
Identities = 90/342 (26%), Positives = 149/342 (43%), Gaps = 52/342 (15%)
Query: 10 FRMKDDESIEEMYSRFQTLVFGLQLLKKS-YVASDHVSKILRSLPSRWRPKVTAIEEAKD 68
F M E + Y+R +TLV ++ + + D V +LRS V I E
Sbjct: 209 FAMIRGEEPTQTYNRLKTLVNKIRSYGSTRWTDHDVVRLMLRSFTVLDPHLVNNIRENPR 268
Query: 69 LNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIAL----PSKGKTSKSSKAYKASESEEES 124
+S E+++ M + E + + + P K S+S +A + ++ E+
Sbjct: 269 YTKMSPEEILGKFVSGRMMIKEARYVDDALNGPIHEPQPIALKASRSKEALPSKVAQIEA 328
Query: 125 PDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIAD 184
G +DE+ MA++ + + R +K+ +K +K + ++ CF C K GHFIA+
Sbjct: 329 A-GLNDEE----MALIIKRFKTALRGRKEHPNK------TKTKGKRSCFKCGKIGHFIAN 377
Query: 185 CPDLQKEKYKVK---SKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKE---------- 231
CPD ++ K KK ++ +K I K W+ S S SD E
Sbjct: 378 CPDNDSDQEKKSGKWEKKKNYKKAKGEAHIGKE----WDSDCSSSDSDNEGLAATAFNKS 433
Query: 232 -----EADDDAKAAMRLVATVSSEAVSEAESDSEDENEV----------YSKIPR-QELV 275
E A + V T +S S +E +S DE+EV SKI + EL+
Sbjct: 434 TLFPNERHTCLMAKEKKVCTRNSTYASSSEDESSDEDEVDYSCLFKGLDRSKIDKINELI 493
Query: 276 DSLKELLSLFEHRTNELTDLKEKYVDLMKQQKTTLLELKASE 317
D+L E L E + + L + +K+V+ QK+ LE+K +E
Sbjct: 494 DALNEKNILLEKQEDSLYEEHDKFVE---AQKSLALEIKRNE 532
>emb|CAE04884.2| OSJNBa0042I15.6 [Oryza sativa (japonica cultivar-group)]
Length = 1510
Score = 618 bits (1593), Expect = e-175
Identities = 311/579 (53%), Positives = 402/579 (68%), Gaps = 7/579 (1%)
Query: 1026 SNSEAEPSSIVQNESASEDFQDNTQQVI----QPKFKH--KSSHPEELIIGSKDSPRRTR 1079
S SE P++ V A+ Q + P+ H + HP + I+G TR
Sbjct: 920 SGSEDVPTAQVDGIDAAGTLGHTDQAQVPLVHHPRIHHTVQRDHPVDNILGDIRKGVTTR 979
Query: 1080 SHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIG 1139
S +S +E VE+AL D W++AMQEELN F RN VW+LV +P Q N+IG
Sbjct: 980 SRVASFCQHYSFVSSLEPTRVEDALGDSDWVMAMQEELNNFARNQVWNLVERPKQ-NVIG 1038
Query: 1140 TKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGI 1199
TKW+FRNK +E V R KARLV QG++Q E +D+ ETFAPVARLE+IR+LL+YA +H
Sbjct: 1039 TKWIFRNKQDEHVVVVRNKARLVTQGFTQVEGLDFGETFAPVARLESIRILLAYAAHHDF 1098
Query: 1200 ILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSN 1259
L+QMDVK AFLNG I E VYV+QPPGFED K P+HVYKL K++YGLKQAP+AWY+ L +
Sbjct: 1099 RLFQMDVKSAFLNGPISELVYVEQPPGFEDPKLPNHVYKLHKALYGLKQAPRAWYECLRD 1158
Query: 1260 FLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSM 1319
FL+KN FE G DTTLF + K D+ I QIYVDDIIFGSTNAS C++FS +M F+MSM
Sbjct: 1159 FLLKNGFEIGNADTTLFTKKFKSDLFICQIYVDDIIFGSTNASFCEEFSSIMTKRFEMSM 1218
Query: 1320 MGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTV 1379
MGEL FFL +Q+ Q++EG ++ QTKY K++LKKF +ED K + TPM L +D G
Sbjct: 1219 MGELTFFLWLQVKQAQEGTFISQTKYVKDILKKFGMEDAKPIKTPMPTNGHLDLDDNGKC 1278
Query: 1380 VDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGL 1439
VDQK+YR MIGSLLYL ASRPDI+ SVC+CARFQ++ +E HL AVKRI RYL T NLGL
Sbjct: 1279 VDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQAEPKECHLIAVKRIQRYLVHTPNLGL 1338
Query: 1440 LYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YI 1499
Y K D++L+G+ D+DYAG +++RKS +G CQFLG +L+SW K+Q +I +ST EA Y+
Sbjct: 1339 WYPKGCDFELLGYSDSDYAGCKVDRKSITGTCQFLGPSLVSWFPKKQNSIVLSTTEAEYV 1398
Query: 1500 SAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRY 1559
+A SCC QLLWMK L+D+ N P+ CDN +AI ++ NP+ HS+ KHI+I HHF+R
Sbjct: 1399 AAGSCCAQLLWMKQTLKDFGYNFTKTPLLCDNESAIKIANNPVQHSKTKHIDIHHHFLRD 1458
Query: 1560 YVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLN 1598
+ KG + + + TE Q ADIFTKPL +RF ++ LN
Sbjct: 1459 HETKGDICLTHVRTETQLADIFTKPLDEKRFCELRSELN 1497
Score = 63.9 bits (154), Expect = 4e-08
Identities = 79/332 (23%), Positives = 122/332 (35%), Gaps = 71/332 (21%)
Query: 10 FRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSK-ILRSLPSRWRPKVTAIEEAKD 68
F M D E+ +EMY R LV ++ L + + V K +LR R V+ I E KD
Sbjct: 97 FVMDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLREFGPRNPTLVSMIREKKD 156
Query: 69 LNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGD 128
L++ D++ + HEM E KT + K +K + G
Sbjct: 157 FKRLTLSDILGRIVSHEMQEEEAR--------------KTRRRVKRFKHFLRKSGYGKGR 202
Query: 129 SDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDL 188
D+D+ KK+ ++ CFNC + GHFIAD P
Sbjct: 203 KDDDK------------------------------GKKQSKRACFNCGEYGHFIADFPKS 232
Query: 189 QKEKYKVKSKKSSFSSSKFRKQIKKSLM-ATWEDLDSE--------SGSDKEEADDDAKA 239
+ K K KK R + ++ M W D E DK + +
Sbjct: 233 NEAKAKGGKKKPE------RAHVAEAHMPEVWYSGDEEDPEVKPKPKPKDKVDGEGGVAT 286
Query: 240 AMRLVATVSSEAVSEAESDSEDENEVYS-------KIPRQELVDSLKELLSLFEHRTNEL 292
++ S E + SD +D++ YS K+ Q+ + ++ S E NEL
Sbjct: 287 VTFKSSSSSKERLFNNLSDDDDDSYHYSCFMAQGRKVMTQKPSHTSLDVDSSDEESDNEL 346
Query: 293 TDLKEKYVDLMKQQKTTLLE----LKASEEEL 320
D+ + + Q L+ LK E L
Sbjct: 347 DDVLKSFSKPAMQHLAKLMRALDTLKKENERL 378
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 617 bits (1592), Expect = e-175
Identities = 312/585 (53%), Positives = 410/585 (69%), Gaps = 4/585 (0%)
Query: 1019 EITPEAESNSEAEPSSIVQNESASEDFQDNTQQ--VIQPKFKHKSS--HPEELIIGSKDS 1074
E+ + ++++ EPS+ + A + ++ Q + P+ S HP + ++G +
Sbjct: 993 EVEDKPSTSTQDEPSTSASSSQAQVEVEEEKAQDPPMPPRIHTALSKDHPIDQVLGDINK 1052
Query: 1075 PRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQ 1134
+TRS +S ++ K V+E L D W+ AM EELN F RN VW LV +P
Sbjct: 1053 GVQTRSRVASICEHYSFVSCLKPKHVDEVLCDPDWMNAMHEELNNFARNKVWILVERPRD 1112
Query: 1135 KNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYA 1194
N+IGTKW+FRNK +E G V R KARLVAQG++Q E +D+ ETFAPVARLEAIR+LL++A
Sbjct: 1113 HNVIGTKWIFRNKQDENGLVVRNKARLVAQGFTQVEGLDFGETFAPVARLEAIRILLAFA 1172
Query: 1195 INHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWY 1254
I L+QMDVK AFLNG I E V+V+QPPGFED K+P+HVYKL K++YGLKQAP+AWY
Sbjct: 1173 SCFDIKLFQMDVKSAFLNGEIAELVFVEQPPGFEDPKNPNHVYKLSKALYGLKQAPRAWY 1232
Query: 1255 DRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDE 1314
+RL FL+ DF+ G+V+TTLF + + D + QIYVDDIIFGSTN CK+F +M E
Sbjct: 1233 ERLRYFLLSKDFKIGKVNTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSRE 1292
Query: 1315 FKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKE 1374
F+MSM+GEL FFLG+QI Q K+G +V QTKY K+LLK+F LED K + TPM L +
Sbjct: 1293 FEMSMIGELNFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLD 1352
Query: 1375 DTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGT 1434
G VD KLYR MIGSLLYLTASRPDI+FSVC+CARFQ+ +E HL AVKRI RYLK +
Sbjct: 1353 KGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHS 1412
Query: 1435 TNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTA 1494
+ +GL Y K +KL+G+ D+DYA +++RKSTSG+CQ LG +L+SW+SK+Q ++A+STA
Sbjct: 1413 STIGLWYPKGAKFKLVGYSDSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTA 1472
Query: 1495 EA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSRAKHIEIKH 1554
EA Y+SA SCC QLLWMK L DY I+ P+ CDN AI ++ NP+ HSR KHI+I+H
Sbjct: 1473 EAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDNDRAIKIANNPVQHSRTKHIDIRH 1532
Query: 1555 HFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
HF+R +V K + I I TE Q ADIFTKPL+ RF ++ LN+
Sbjct: 1533 HFLRDHVTKCDIVISHIRTEDQLADIFTKPLNETRFCKLRNELNV 1577
Score = 101 bits (251), Expect = 2e-19
Identities = 96/362 (26%), Positives = 164/362 (44%), Gaps = 54/362 (14%)
Query: 6 QYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLPSRWRPKVTAIEE 65
QYE F M ES+ +MY R +V L+ L +Y + K+LR+LP ++ VT +
Sbjct: 116 QYETFYMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTMLIN 175
Query: 66 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESP 125
+ D++ ++ L+ + ++M ++ KK A PSK K E + +S
Sbjct: 176 S-DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSK----KCIALQAEVEDKSKSK 226
Query: 126 DGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKG-------CFNCKKP 178
+ +ED +M +L+ + L ++K+ RGS N ++ + CF +
Sbjct: 227 VNEVNEDLEEEMILLARRFNDLLERRKE--RGRGSNSNRRRNRRLNKTLSNLRCFEYGEK 284
Query: 179 GHFIADCPDLQKEKYKVKSKKSSFSSSKFRKQIKK------SLMATW---EDLDSESGSD 229
GHF + CP + K KKS K K++KK + + W E+ + SGS+
Sbjct: 285 GHFASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSE 342
Query: 230 KEEADDDAK-----------------AAMRLVATVSSEAVSEAESDSEDENEVYSKIPRQ 272
+E DD + A + L+A SS+ S ++S+S+D+ + + +
Sbjct: 343 EEGGDDASSKKKKMVVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYE 399
Query: 273 ELVDSLKELLSLFEHRTNELTDLKEKYVD---LMKQQKTTLLELKASEEELKGF--NLIS 327
ELV +EL + E + L + Y L ++ KT+ L S E+LK NL+S
Sbjct: 400 ELVSMFEELHAYSEKEIVKFKALNKDYASLDVLYEELKTSNERLTISHEKLKEAHDNLLS 459
Query: 328 TT 329
TT
Sbjct: 460 TT 461
>gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534234|ref|NP_921419.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1419
Score = 613 bits (1582), Expect = e-173
Identities = 303/545 (55%), Positives = 398/545 (72%), Gaps = 3/545 (0%)
Query: 1057 FKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIG--LLSIIELKTVEEALSDDGWILAMQ 1114
F+ +S + ++ +GS R TRS + ++ E K V AL+D+ WI AM
Sbjct: 869 FEDESDYDDDDEVGSAGE-RTTRSKVTTHDVCANSAFVASFEPKDVSHALTDESWINAMH 927
Query: 1115 EELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDY 1174
EEL F+RN VW LV P N+IGTKWVF+NK NE G + R KARLVAQG++Q E +D+
Sbjct: 928 EELENFERNKVWTLVEPPSGHNVIGTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGLDF 987
Query: 1175 TETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPD 1234
ETFAPVAR+EAIRLLL++A + G LYQMDVK AFLNG I+EEVYVKQPPGFE+ P+
Sbjct: 988 DETFAPVARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPN 1047
Query: 1235 HVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDI 1294
HV+KL K++YGLKQAP+AWYDRL NFL+ F G+VD TLF + L VQIYVDDI
Sbjct: 1048 HVFKLSKALYGLKQAPRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDI 1107
Query: 1295 IFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFK 1354
IFG + ++ DF++ M+ EF+MSMMGEL +FLG+QI Q+ +G +VHQTKYTK+LL++FK
Sbjct: 1108 IFGCSTHAVVVDFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFK 1167
Query: 1355 LEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQS 1414
+E+CK ++TP+ T L ++ G VDQK YR MIGSLLYLTASRPDI F+VCLCARFQ+
Sbjct: 1168 MENCKPISTPIGSTAVLDPDEDGEAVDQKEYRSMIGSLLYLTASRPDIQFAVCLCARFQA 1227
Query: 1415 DSRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFL 1474
R SH AVKRI RYL T G+ Y S L G+ DAD+ G RI+RKSTSG C FL
Sbjct: 1228 SPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRKSTSGTCHFL 1287
Query: 1475 GENLISWASKRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAA 1534
G +LI+W+S++Q+++A STAE+ Y++AASCC+Q+LW+ L+DY I +P+FCDNT+A
Sbjct: 1288 GTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKDYGITFEKVPLFCDNTSA 1347
Query: 1535 ICLSKNPILHSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIK 1594
I ++KNP+ HSR KHI+I+ HF+R +V+KG +++QF+DT+ Q ADIFTKPL RF F++
Sbjct: 1348 INIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVELQFLDTKLQIADIFTKPLDSNRFAFLR 1407
Query: 1595 KNLNM 1599
L +
Sbjct: 1408 GELGV 1412
Score = 80.9 bits (198), Expect = 3e-13
Identities = 76/330 (23%), Positives = 151/330 (45%), Gaps = 48/330 (14%)
Query: 6 QYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSL-----PSRWRPKV 60
+Y F MK E++++ SRF ++ L+ + SY A+ S+I R S W KV
Sbjct: 116 EYIKFEMKSGEALDDYLSRFNKILSDLRSVDSSYDANYPQSEISRHFLNGLDMSIWEMKV 175
Query: 61 TAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKG---KTSKSSKAYKA 117
T+I+E+ +++TL+++ L + LK EM++ + KS ++ S S S ++ A
Sbjct: 176 TSIQESVNMSTLTLDSLYTKLKTREMNILSRKVDSKSSALVSSSSSLIVDASSSMPSFLA 235
Query: 118 SESEEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKK 177
+ + + D ++ + +A+++N+ +AR + +N K+ CF C
Sbjct: 236 AFN--ATSDDQLEQIEEEDLALVANR---IARAM-------NNARNRKRGGPNRCFECGS 283
Query: 178 PGHFIADCPDLQKEKYKVK-------SKKSSFSSSKFRKQ------IKKSLMATWEDLDS 224
H + CP L + K + K +K ++++ SK Q ++K+ +
Sbjct: 284 IDHLRSHCPKLGRGKREDKDGEKTNNNKPNNYNKSKGSNQGRKMENLRKAFQQVCAAFEP 343
Query: 225 ESGSDKEEADDDAKAAMRLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSL 284
S D E DDD + V+ V A E++++ ED V + +E +++
Sbjct: 344 LSDVDGESGDDDKG---KNVSDVCFMARGESDTEYEDNE-----------VSAFEEAINI 389
Query: 285 FEHRTNEL-TDLKEKYVDLMKQQKTTLLEL 313
+ ++ +D K+ ++ Q K +LE+
Sbjct: 390 LSAKNKKVFSDGKKNLNMILDQSKVLVLEV 419
>gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1411
Score = 613 bits (1580), Expect = e-173
Identities = 312/585 (53%), Positives = 406/585 (69%), Gaps = 4/585 (0%)
Query: 1019 EITPEAESNSEAEPSSIVQNESASEDFQDNTQQ--VIQPKFKHKSS--HPEELIIGSKDS 1074
E+ + ++++ EPS+ A + ++ Q + P+ S HP + ++G
Sbjct: 820 EVEDKPSTSTQDEPSTSASPSQAQVEVEEEKAQDPPMPPRIHTALSKDHPIDQVLGDISK 879
Query: 1075 PRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQ 1134
+TRS +S +E K V+EAL D W+ AM EELN F RN VW LV +P
Sbjct: 880 GVQTRSRIASICEHYSFVSCLEPKHVDEALCDLDWMNAMHEELNNFARNKVWTLVERPRD 939
Query: 1135 KNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYA 1194
N+IGTKW+FRNK +E G V R KARLVAQG +Q E +D+ ETFAPVARLEAIR+LL++A
Sbjct: 940 HNVIGTKWIFRNKQDENGLVVRNKARLVAQGVTQVEGLDFGETFAPVARLEAIRILLAFA 999
Query: 1195 INHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWY 1254
I L+QMDVK FLNG I E V+V+QPPGFED K+P+HVYKL K++YGLKQAP+AWY
Sbjct: 1000 SCFDIKLFQMDVKSVFLNGEIAELVFVEQPPGFEDPKNPNHVYKLSKALYGLKQAPRAWY 1059
Query: 1255 DRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDE 1314
+RL +FL+ DF+ G+VDTTLF + + D + QIYVD IIFGSTN CK+F +M E
Sbjct: 1060 ERLRDFLLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDGIIFGSTNEVFCKEFGDMMSRE 1119
Query: 1315 FKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKE 1374
F MSM+GEL FFLG+QI Q K+G +V QTKY K+LLK+F LED K + TPM L +
Sbjct: 1120 FDMSMIGELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLD 1179
Query: 1375 DTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGT 1434
+ G VD KLYR MIGSLLYLTASRPDI+FSVC+CARFQ+ +E HL AVKRI RYLK +
Sbjct: 1180 EGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHS 1239
Query: 1435 TNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTA 1494
+N+GL Y K +KL+G+ +DYA +++RKSTSG+CQ LG +L+SW+SK+Q ++A+STA
Sbjct: 1240 SNIGLWYPKGAKFKLVGYSYSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTA 1299
Query: 1495 EA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSRAKHIEIKH 1554
EA Y+SA SCC QLLWMK L DY I+ P+ CDN +AI ++ NP+ HSR KHI+I+H
Sbjct: 1300 EAKYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDNDSAIKIANNPVQHSRTKHIDIRH 1359
Query: 1555 HFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
HF+R +V K + I I TE Q ADIFTKPL F ++ LN+
Sbjct: 1360 HFLRDHVAKCDIVISHIRTEDQLADIFTKPLDETCFYKLRNELNV 1404
Score = 102 bits (253), Expect = 1e-19
Identities = 97/366 (26%), Positives = 163/366 (44%), Gaps = 62/366 (16%)
Query: 6 QYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLPSRWRPKVTAIEE 65
QYE F M ES+ +MY R +V L+ L +Y + K+LR+LP ++ VT +
Sbjct: 104 QYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTMLIN 163
Query: 66 AKDLNTLSVEDLVSSLKVHEM----SLNEHETSKKSKSIALPSKGKTSKSSKAYKASESE 121
+ D++ ++ L+ + ++M E S K IAL ++ + SK + +E
Sbjct: 164 S-DMSRMTPASLLGKINTNDMYKLKKKEMEEASSSKKCIALQAEVEDKSKSKVNEVNEDL 222
Query: 122 EESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKG-------CFN 174
EE +M +L+ K L ++K+ RGS N ++ + CF
Sbjct: 223 EE------------EMVLLARKFNDLLGRRKE--RGRGSNSNRRRNRRPNKTFSNLRCFE 268
Query: 175 CKKPGHFIADCPDLQKEKYKVKSKKSSFSSSKFRKQIKK------SLMATW---EDLDSE 225
C + GHF + CP + K KKS K K++KK + + W E+ +
Sbjct: 269 CCEKGHFASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSTS 326
Query: 226 SGSDKEEADDDAK-----------------AAMRLVATVSSEAVSEAESDSEDENEVYSK 268
SGS++E DD + A + L+A SS+ S ++S+S+D+ +
Sbjct: 327 SGSEEEGGDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---D 383
Query: 269 IPRQELVDSLKELLSLFEHRTNELTDLKEKYVD---LMKQQKTTLLELKASEEELKGF-- 323
+ ELV +EL + E + LK+ + L ++ K + L S E+LK
Sbjct: 384 VSYDELVSMFEELHAYSEKEIVKFKALKKDHASLEVLYEELKISHERLTISHEKLKEAHD 443
Query: 324 NLISTT 329
NL+STT
Sbjct: 444 NLLSTT 449
>gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 709
Score = 606 bits (1563), Expect = e-171
Identities = 307/597 (51%), Positives = 414/597 (68%), Gaps = 7/597 (1%)
Query: 1006 LKSIQEVESS-PEAEITPEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHKSSHP 1064
++ +QE S P + + +++ + P + + +E + +T V P + P
Sbjct: 110 VRPVQEERSDRPGSSSSGTVDADRDGPPKTSTSTSTGTE--RGSTSDVTTPLHIQRRHPP 167
Query: 1065 EELI--IGSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQR 1122
E++I IG + + + +H S ++ E K V AL+D+ WI AM EEL F+R
Sbjct: 168 EQIIGNIGERTTRSKVTTHDVCANS--AFVASFESKDVSHALTDESWINAMHEELENFER 225
Query: 1123 NDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVA 1182
N VW LV F NIIGTKWVF+NK NE G + R KARLVAQG++Q E +D+ ETFAPVA
Sbjct: 226 NKVWTLVETKFGHNIIGTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVA 285
Query: 1183 RLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKS 1242
R+EAIR LL++A + G LYQMDVK AFLNG I+EEVY+KQPPGFE+ P+HV+KL K+
Sbjct: 286 RIEAIRHLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYIKQPPGFENPDFPNHVFKLSKA 345
Query: 1243 IYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNAS 1302
YGLKQAP+AWYDRL NFL+ F G+ D TLF + L VQIYVDDIIFG + +
Sbjct: 346 FYGLKQAPRAWYDRLKNFLLAKGFTMGKFDKTLFVLKHGDNQLFVQIYVDDIIFGCSIHA 405
Query: 1303 LCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMN 1362
L DF++ M+ EF+MSMMGEL +FLG+QI Q+ +G +VHQTKYTK+LL++FK+E+CK ++
Sbjct: 406 LVVDFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPIS 465
Query: 1363 TPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLT 1422
TP+ T L ++ G VDQK YR MIGSLLYLTASRPDI F+VCL ARFQ+ R SH
Sbjct: 466 TPIGSTAVLDPDEDGKAVDQKEYRSMIGSLLYLTASRPDIQFAVCLRARFQASPRASHRQ 525
Query: 1423 AVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWA 1482
AVKRI RYL T G+ Y S L G+ DAD+ G RI+RKSTSG C FLG +LI+W+
Sbjct: 526 AVKRIMRYLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRKSTSGTCHFLGTSLIAWS 585
Query: 1483 SKRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPI 1542
S++Q+++A STAE+ Y++AASCC+Q+LW+ L+DY + + +FCDNT+AI ++KNP+
Sbjct: 586 SRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKDYGLTFEKVHLFCDNTSAINIAKNPV 645
Query: 1543 LHSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
HSR KHI+I+ HF+R +V+KG +++QF+DT Q ADIFTKPL RF F++ L +
Sbjct: 646 QHSRTKHIDIRFHFLRDHVEKGDVELQFLDTNLQIADIFTKPLDSNRFAFLRGELGI 702
>gb|AAL35396.1| Opie2a pol [Zea mays]
Length = 1048
Score = 606 bits (1562), Expect = e-171
Identities = 301/596 (50%), Positives = 408/596 (67%), Gaps = 7/596 (1%)
Query: 1009 IQEVESSPEAEITPEAESNSEAEPSSIVQNESASEDFQDNTQQV-----IQPKFKHKSSH 1063
+++ + S + P + + +A P ++ ++D Q ++ Q + + +H
Sbjct: 448 LEQDQPSSTTMVHPPTQDDEQA-PQVGAHDQGGAQDVQVEEEEAPQAPPTQVRATIQRNH 506
Query: 1064 PEELIIGSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRN 1123
P I+G TRS +S IE VEE L D W+LAMQEELN F+RN
Sbjct: 507 PVNQILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEVLLDPDWVLAMQEELNNFKRN 566
Query: 1124 DVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVAR 1183
+VW LVP+P Q N++GTKWVFRNK +E G VTR KARLVA+GY+Q +D+ ETFAPVAR
Sbjct: 567 EVWTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVAR 625
Query: 1184 LEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSI 1243
L++IR+ L+YA +H LYQMDVK AFLNG I+EEVYV+QPPGFED + PDHV KL K++
Sbjct: 626 LKSIRIWLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERFPDHVCKLSKAL 685
Query: 1244 YGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASL 1303
YGLKQAP+AWY+ L +FLI N F+ G+ D TLF +T D+ + QIYVDDIIFGSTN +
Sbjct: 686 YGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQNS 745
Query: 1304 CKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNT 1363
C++FS++M +F+MSMMGEL +FLG Q+ Q K+G ++ QTKYT++L+K+F ++D K T
Sbjct: 746 CEEFSRVMTQKFEMSMMGELSYFLGFQVRQLKDGTFISQTKYTQDLIKRFGMKDAKPAKT 805
Query: 1364 PMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTA 1423
PM G VDQK YR IGSLLYL ASRPDI+ SVC+CARFQSD RE HL A
Sbjct: 806 PMGTDGHTDLNKGGKSVDQKAYRSTIGSLLYLCASRPDIMLSVCMCARFQSDPRECHLVA 865
Query: 1424 VKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWAS 1483
VKRI RYL T G+ Y K + LIG+ D+DYA +++RKSTS CQFLG +L+SW S
Sbjct: 866 VKRILRYLVATPCFGIWYPKGSTFDLIGYSDSDYARCKVDRKSTSRMCQFLGRSLVSWNS 925
Query: 1484 KRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPIL 1543
K+Q ++A+STAEA Y++ CC QLLWM+ L D+ N + +P+ CDN +AI +++NP+
Sbjct: 926 KKQTSVALSTAEAEYVAVGQCCAQLLWMRQTLRDFGYNLSEVPLLCDNESAIRIAENPVE 985
Query: 1544 HSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
HSR KHI+I+HHF+R + QKG++++ + +E+ ADIFTKPL + F + LN+
Sbjct: 986 HSRTKHIDIRHHFLRDHQQKGVIEVFHVSSENHLADIFTKPLDEQTFCKLHSELNV 1041
>ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|30017518|gb|AAP12940.1| transposon protein, putative,
CACTA, En/Spm sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 1975
Score = 604 bits (1558), Expect = e-171
Identities = 311/607 (51%), Positives = 418/607 (68%), Gaps = 8/607 (1%)
Query: 998 QNLINLLILKSIQEVESSPEAEITPEAESNSEAEPSSIVQNESASEDFQDN-TQQVIQPK 1056
+ L+ + SI++V+ E+ + ++++ EPS+ A + ++ Q P+
Sbjct: 1365 EGLMRAMKNMSIRDVKP---IEVEDKPSTSTQDEPSTFATPSQAQVEVEEEKAQDPPMPQ 1421
Query: 1057 FKHKS---SHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAM 1113
H + HP + ++G +TRS +S +E K V+EAL D W+ AM
Sbjct: 1422 RIHTALSKDHPIDQVLGDISKDVQTRSRVASICEHYSFVSCLEPKHVDEALCDLDWMNAM 1481
Query: 1114 QEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDID 1173
EELN F RN VW LV +P N+IGTKWVFRNK +E+G V R KARLVAQ ++Q E +D
Sbjct: 1482 HEELNNFARNKVWTLVERPRDHNVIGTKWVFRNKQDEKGLVVRSKARLVAQDFTQVEGLD 1541
Query: 1174 YTETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHP 1233
+ ETFAPVARLEAIR+LL++A I L+QMDVK AFLNG I E V+V+QPPGFED K+P
Sbjct: 1542 FGETFAPVARLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAELVFVEQPPGFEDPKNP 1601
Query: 1234 DHVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDD 1293
+HVYKL K++YGLK AP+AWY+RL +FL+ DF+ G+VDTTL + + D ++ QIYVDD
Sbjct: 1602 NHVYKLSKALYGLKPAPRAWYERLRDFLLPKDFKIGKVDTTLSTKIIDDDFVVCQIYVDD 1661
Query: 1294 IIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKF 1353
IIFGSTN CK+F +M EF+MSM+GEL FFLG+QI Q K+G +V QTKY K+LLK+F
Sbjct: 1662 IIFGSTNEVFCKEFGDMMSREFEMSMVGELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRF 1721
Query: 1354 KLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQ 1413
LED K + TPM L ++ G VD KLY MIGSLLYLTASRPDI+FSVC+CARFQ
Sbjct: 1722 GLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYHSMIGSLLYLTASRPDIMFSVCMCARFQ 1781
Query: 1414 SDSRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQF 1473
+ ++ HL AVKRI RYLK ++ +GL Y K +K++ + D DYA +++RKSTSG+CQ
Sbjct: 1782 AAPKKCHLVAVKRILRYLKHSSTIGLWYPKGAKFKIVSYSDLDYAVCKVDRKSTSGSCQM 1841
Query: 1474 LGENLISWASKRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTA 1533
LG +L+SW+SK+Q ++A+STAEA Y+SA SCC QLLWMK L DY I+ P+ CDN +
Sbjct: 1842 LGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDNDS 1901
Query: 1534 AICLSKNPILHSRAKHIEIKHHFIR-YYVQKGILDIQFIDTEHQWADIFTKPLSVERFDF 1592
AI ++ NP+ HSR KHI+I++HF++ + V K + I I TE+Q ADIFTKPL RF
Sbjct: 1902 AIKIANNPVQHSRTKHIDIRYHFLKDHVVAKSDIVISHIRTENQLADIFTKPLDETRFCK 1961
Query: 1593 IKKNLNM 1599
++ LN+
Sbjct: 1962 LRNELNV 1968
Score = 53.5 bits (127), Expect = 6e-05
Identities = 59/206 (28%), Positives = 93/206 (44%), Gaps = 38/206 (18%)
Query: 156 SKRGSYKNSKKEDQ-KG-CFNCKKPGHFIADCPDLQKEKYKVKSKKSSFSSSKFRKQIKK 213
SK+ ++ ED+ KG CF C + HF + CP + K KKS K K++KK
Sbjct: 922 SKKCIAPQAEVEDKGKGKCFECGEKRHFASKCPSKDDDGDKSSMKKS--GGYKLMKKLKK 979
Query: 214 S------LMATW---EDLDSESGSDKEEADDDAK-----------------AAMRLVATV 247
+ W E+ + SGS++E DD + A + L+A
Sbjct: 980 EGKKIEVFIGDWVTNEESSASSGSEEEGGDDASSKKKKMAVVAIKEAPSPFAPLCLMAKG 1039
Query: 248 SSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYVD---LMK 304
SS+ S ++S+S+D+ + S ELV +EL + E + LK+ + L +
Sbjct: 1040 SSKVTSLSDSESDDDCDYAS---YDELVSMFEELHAYSEKEIVKFKALKKDHASLEVLYE 1096
Query: 305 QQKTTLLELKASEEELKGF--NLIST 328
+ KT+ L S E+LK NL+ST
Sbjct: 1097 ELKTSHERLTISHEKLKEAHDNLLST 1122
>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
Length = 2319
Score = 604 bits (1557), Expect = e-171
Identities = 306/571 (53%), Positives = 399/571 (69%), Gaps = 17/571 (2%)
Query: 1013 ESSPEAEITPEAESNSEAEPSSIVQNESASEDFQ------DNTQQVIQ-------PKFKH 1059
+++P P E N + P+ +V++E + D + N ++ IQ P+ H
Sbjct: 1216 QANPSTSSHPNHEENHQRMPT-VVEDEQENIDGEVPLDQVTNEEEQIQRHPSVPHPRVHH 1274
Query: 1060 --KSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEEL 1117
+ HP + I+GS TRS +S +E VEEAL D WI AMQEEL
Sbjct: 1275 TIQRDHPVDNILGSIRRGVTTRSRLANFCEFYSFVSSLEPLKVEEALDDPDWITAMQEEL 1334
Query: 1118 NQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTET 1177
N F RN+VW LV +P Q N+IGTKWVFRNK +E G VT+ KARLVAQGY+Q E +D+ ET
Sbjct: 1335 NNFTRNEVWSLVQRPKQ-NVIGTKWVFRNKQDENGVVTKNKARLVAQGYTQVEGLDFGET 1393
Query: 1178 FAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVY 1237
+APVARLE+IR+L++YA NH LYQMDVK AFLNG ++E VYV+QPPGFED K P+HVY
Sbjct: 1394 YAPVARLESIRILIAYATNHDFKLYQMDVKSAFLNGPLQERVYVEQPPGFEDPKKPNHVY 1453
Query: 1238 KLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFG 1297
L K++YGLKQAP+AWYD L +FLIKN F G+ D+TLF R + ++ + QIYVDDIIFG
Sbjct: 1454 LLHKALYGLKQAPRAWYDCLKDFLIKNGFTIGKADSTLFTRKVDNELFVCQIYVDDIIFG 1513
Query: 1298 STNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLED 1357
STN C++FSK+M + F+MSMMGELK+FLG Q+ Q KEG ++ QTKYT+++LKKF +E
Sbjct: 1514 STNEKFCEEFSKVMTNRFEMSMMGELKYFLGFQVKQLKEGTFLCQTKYTQDMLKKFGMEK 1573
Query: 1358 CKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSR 1417
K TPM L + G VDQKLYR MIGSLLYL ASRPDI+ SVC+CARFQ++ +
Sbjct: 1574 AKHAKTPMPSNGHLDLNEEGKPVDQKLYRSMIGSLLYLCASRPDIMLSVCMCARFQANPK 1633
Query: 1418 ESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGEN 1477
+ HL AVKRI RYL T NLGL Y K + L+G+ D+DYAG +++RKST+G CQFLG +
Sbjct: 1634 DCHLVAVKRILRYLVHTQNLGLWYPKGSFFDLLGYSDSDYAGCKVDRKSTTGTCQFLGRS 1693
Query: 1478 LISWASKRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICL 1537
L+SW+SK+Q +A+STAEA YI+A +CC QLLWMK L D+ N IP+ CDN +AI L
Sbjct: 1694 LVSWSSKKQNCVALSTAEAEYIAAGACCAQLLWMKQTLRDFGCEFNKIPLLCDNESAIKL 1753
Query: 1538 SKNPILHSRAKHIEIKHHFIRYYVQKGILDI 1568
+ NP+ HSR KHI+I+ HF+R + KG +++
Sbjct: 1754 ANNPVQHSRTKHIDIRRHFLRDHEAKGDIEL 1784
Score = 79.3 bits (194), Expect = 1e-12
Identities = 62/253 (24%), Positives = 118/253 (46%), Gaps = 27/253 (10%)
Query: 16 ESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKI-LRSLPSRWRPKVTAIEEAKDLNTLSV 74
ES++ ++ R LV +++L + V+++ +R+ + + I + D ++
Sbjct: 244 ESLQSLFDRLMVLVNKIRVLGSEDWSDSKVTRLFMRAYKEKDKSLARMIRDRDDYEDMTP 303
Query: 75 EDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTS-KSSKAYKASESEEESPDGDSDEDQ 133
L + ++ HE +E K S AL + + + K SK +KA + E S D DS D+
Sbjct: 304 HQLFAKIQQHE---SEEAPIKTRDSHALITNEQDNLKKSKDHKAKKVVETSSDEDSSSDE 360
Query: 134 SVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEKY 193
M + + KKF+ K ++ +K ++ C+ C + GHFIADCP+ ++++
Sbjct: 361 DTAMFI---------KTFKKFVRKNDKFQ--RKGKKRACYECGQTGHFIADCPNKKEQEA 409
Query: 194 KVKSKKSSFSSS-------KFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVAT 246
K + KK F K +K + + W D S S++EE A + + +T
Sbjct: 410 KKEYKKDKFKKGGKTKGYFKKKKYGQAHIGEEWNSDDESSSSEEEE----VVANVAIQST 465
Query: 247 VSSEAVSEAESDS 259
S++ + + DS
Sbjct: 466 SSAQLFTNLQDDS 478
>gb|AAL35398.1| Opie2 pol [Zea mays]
Length = 691
Score = 603 bits (1556), Expect = e-170
Identities = 301/596 (50%), Positives = 406/596 (67%), Gaps = 7/596 (1%)
Query: 1009 IQEVESSPEAEITPEAESNSEAEPSSIVQNESASEDFQDNTQQV-----IQPKFKHKSSH 1063
+++ + S + P + + +A P ++ ++D Q ++ Q + + +H
Sbjct: 91 LEQDQPSSTTMVHPPTQDDEQA-PQVEAHDQGGAQDVQVEEEEAPQAPPTQVRATIQRNH 149
Query: 1064 PEELIIGSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRN 1123
P I+G TRS +S IE VEE L D W+LAMQEELN F+RN
Sbjct: 150 PVNQILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEVLLDPDWVLAMQEELNNFKRN 209
Query: 1124 DVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVAR 1183
+VW LVP+P Q N++GTKWVFRNK E G VTR KARLVA+GY+Q +D+ ETFAPVAR
Sbjct: 210 EVWTLVPRPKQ-NVVGTKWVFRNKQYEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVAR 268
Query: 1184 LEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSI 1243
L++IR+ L+YA +H LYQMDVK AFLNG I+EEVYV+QPPGFED + PDHV KL K++
Sbjct: 269 LKSIRIWLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERFPDHVCKLSKAL 328
Query: 1244 YGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASL 1303
YGLKQAP+AWY+ L +FLI N F+ G+ D TLF +T D+ + QIYVDDIIFGSTN +
Sbjct: 329 YGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQNS 388
Query: 1304 CKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNT 1363
C++FS++M +F+MSMMGEL +FLG Q+ Q K+G ++ QTKYT++L+K+F ++D K T
Sbjct: 389 CEEFSRVMTQKFEMSMMGELSYFLGFQVRQLKDGTFISQTKYTQDLIKRFGMKDAKPAKT 448
Query: 1364 PMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTA 1423
PM G VDQK YR IGSLLYL ASRPDI+ SVC+CARFQSD RE HL A
Sbjct: 449 PMGTDGHTDLNKGGKSVDQKAYRSTIGSLLYLCASRPDIMLSVCMCARFQSDPRECHLVA 508
Query: 1424 VKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWAS 1483
VKRI RYL T G+ Y K + LIG+ D+DYA +++RKSTS CQFLG +L+SW S
Sbjct: 509 VKRILRYLVATPCFGIWYPKGSTFDLIGYSDSDYARCKVDRKSTSRTCQFLGRSLVSWNS 568
Query: 1484 KRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPIL 1543
K+Q ++A+STAEA Y++ CC QLLWM+ L D+ N + +P+ CDN +AI +++NP+
Sbjct: 569 KKQTSVALSTAEAEYVAVGQCCAQLLWMRQTLRDFGYNLSEVPLLCDNESAIRIAENPVE 628
Query: 1544 HSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
HSR KHI+I+HHF+R + QKG +++ + +E+ ADIFTKPL + F + LN+
Sbjct: 629 HSRTKHIDIRHHFLRDHQQKGDIEVFHVSSENHLADIFTKPLDEQTFCKLHSELNV 684
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.333 0.143 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,410,635,494
Number of Sequences: 2540612
Number of extensions: 96836612
Number of successful extensions: 624622
Number of sequences better than 10.0: 4734
Number of HSP's better than 10.0 without gapping: 1823
Number of HSP's successfully gapped in prelim test: 3134
Number of HSP's that attempted gapping in prelim test: 598167
Number of HSP's gapped (non-prelim): 18740
length of query: 1604
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1462
effective length of database: 502,593,490
effective search space: 734791682380
effective search space used: 734791682380
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 82 (36.2 bits)
Medicago: description of AC146807.3