BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146806.4 + phase: 0 /pseudo
(796 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44142.1| putative polyprotein [Cicer arietinum] 566 e-160
gb|AAT66771.1| putative polyprotein [Solanum demissum] 528 e-148
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 523 e-147
gb|AAL59229.1| gag-pol [Zea mays] 522 e-146
gb|AAO45752.1| pol protein [Cucumis melo] 521 e-146
emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar... 516 e-145
gb|AAP52881.1| putative retroelement [Oryza sativa (japonica cul... 516 e-144
gb|AAU44125.1| putative polyprotein [Oryza sativa (japonica cult... 516 e-144
gb|AAP52850.1| putative retroelement [Oryza sativa (japonica cul... 515 e-144
gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica ... 514 e-144
gb|AAV44060.1| putative polyprotein [Oryza sativa (japonica cult... 514 e-144
gb|AAT73646.1| putative polyprotein [Oryza sativa (japonica cult... 514 e-144
gb|AAP53126.1| putative retroelement [Oryza sativa (japonica cul... 514 e-144
gb|AAP52925.1| putative retroelement [Oryza sativa (japonica cul... 514 e-144
gb|AAP52848.1| putative retroelement [Oryza sativa (japonica cul... 514 e-144
emb|CAE05072.2| OSJNBa0094P09.11 [Oryza sativa (japonica cultiva... 514 e-144
emb|CAE05068.2| OSJNBa0094P09.7 [Oryza sativa (japonica cultivar... 514 e-144
gb|AAT73694.1| putative polyprotein [Oryza sativa (japonica cult... 514 e-144
gb|AAT73680.1| putative polyprotein [Oryza sativa (japonica cult... 514 e-144
gb|AAP52927.1| putative retroelement [Oryza sativa (japonica cul... 514 e-144
>emb|CAC44142.1| putative polyprotein [Cicer arietinum]
Length = 655
Score = 566 bits (1459), Expect = e-160
Identities = 266/439 (60%), Positives = 349/439 (78%), Gaps = 2/439 (0%)
Query: 258 PGKANVVADVLSRKTLHMYAL-MVKELELIEQFGELSLVSELTPDGVRLGMLKLTSNILE 316
PGKANVVAD LSR+++ + +L M ++ EL E F +L L E P ++ GM+K++S +LE
Sbjct: 218 PGKANVVADALSRRSVSVSSLIMARQQELWEAFRDLHLNVEFAPGILKFGMIKISSGLLE 277
Query: 317 EIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHRS 376
+I N Q +D+ + ++ L+ QGK +F++ ++VL R+CVP++ +++ IL+E H+S
Sbjct: 278 DIANSQ-DDVLIQEKRNLIVQGKTTEFKIGADNVLRCNGRICVPEITAMRKTILEEAHKS 336
Query: 377 SLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPEW 436
LSIHPGATKMYQDL++ +WWPGMKK +AE+V CL CQK+ +EHQRP+G++QPL +PEW
Sbjct: 337 KLSIHPGATKMYQDLRQNYWWPGMKKHVAEYVSTCLTCQKAKVEHQRPAGMLQPLDIPEW 396
Query: 437 TWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRLH 496
WDSISMDF+ LPKT + D+IWVIVDRLTKS HF+P++T+ + +L EIYI +IVRLH
Sbjct: 397 KWDSISMDFITGLPKTRRKNDSIWVIVDRLTKSAHFLPVRTTYKVDQLTEIYIAEIVRLH 456
Query: 497 GIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACVL 556
G+PSSIVSDRDP+FTS+FW +L ALGTKL LSSAYHPQTDGQTERT QSLEDLLRACVL
Sbjct: 457 GVPSSIVSDRDPKFTSHFWGALHEALGTKLRLSSAYHPQTDGQTERTNQSLEDLLRACVL 516
Query: 557 EQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQE 616
+ SWD LPLIEFTYNNSFH+SI MAP++ALYGR+C+TPLCW++ GE+ ++ PE+VQ+
Sbjct: 517 DDRGSWDHVLPLIEFTYNNSFHTSIGMAPYQALYGRKCQTPLCWYKDGENMIVGPEMVQQ 576
Query: 617 TTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTPR 676
TT KVK I+EKMK SQ KSY DKRR+ +EF+ GDHVFL V P TGVG ALK +KLTP+
Sbjct: 577 TTAKVKKIKEKMKTSQDRQKSYADKRRRLLEFEQGDHVFLRVTPTTGVGRALKSKKLTPK 636
Query: 677 FVGPFDVIEKVGVVAYRIA 695
F+GP+ + ++G VAYRIA
Sbjct: 637 FIGPYQIYARIGPVAYRIA 655
>gb|AAT66771.1| putative polyprotein [Solanum demissum]
Length = 1769
Score = 528 bits (1361), Expect = e-148
Identities = 266/536 (49%), Positives = 362/536 (66%), Gaps = 6/536 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKELEL------IEQFGELSLVSELTPDGVRLGMLKLT 311
PGKANVVAD LSRK + M +L +E I+ + +++ L +++
Sbjct: 1228 PGKANVVADALSRKAVSMGSLAFLSVEERPLALDIQSLANSMVRLDISDSRCVLAFMRVQ 1287
Query: 312 SNILEEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILD 371
S++L+ I+ Q ED LV V GG LD + VL F R+CVP V DL + IL
Sbjct: 1288 SSLLDRIRGCQFEDDTLVALRDRVLADDGGQATLDPDGVLKFAGRICVPRVGDLIQLILS 1347
Query: 372 EGHRSSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPL 431
E H S SIHPG KMY+DL++ +WW GM+++IA+FV CL CQ+ EH RP G Q L
Sbjct: 1348 EAHESRYSIHPGTAKMYRDLRQHYWWSGMRRDIADFVSRCLCCQQVKAEHLRPGGEFQRL 1407
Query: 432 FVPEWTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQ 491
+PEW W+ I+MDFV LP+TS+ D+IWVIVDRLTKS HF+P+ T+ S RLA IYI +
Sbjct: 1408 PIPEWKWERITMDFVVGLPRTSRGVDSIWVIVDRLTKSAHFLPVHTTFSAERLARIYIRE 1467
Query: 492 IVRLHGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLL 551
+VRLHG+P SI+SDR +FTS+FW + Q LGT++ LS+++HPQTDGQ+ERTIQ LED+L
Sbjct: 1468 VVRLHGVPVSIISDRGSQFTSSFWRAFQEELGTRVHLSTSFHPQTDGQSERTIQVLEDML 1527
Query: 552 RACVLEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAP 611
RACV++ G W++ LPL EF YNNS+HSSI+MAPFEALYGRRCR+P+ WFES E
Sbjct: 1528 RACVMDFGGQWEQFLPLAEFAYNNSYHSSIQMAPFEALYGRRCRSPVGWFESTEPRPRGT 1587
Query: 612 EVVQETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCR 671
+++QE ++V++IQ++++ +QS +SY D+RR+ + F VGD VFL V+P+ GV +
Sbjct: 1588 DLLQEALDQVRVIQDRLRTAQSRHQSYADQRRRPLRFSVGDRVFLRVSPMKGVMRFGRRG 1647
Query: 672 KLTPRFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVR 731
KL+PR++GPF+++ VG VAY +ALPP S +H VFHV LR+YV D SHV++ D +E+
Sbjct: 1648 KLSPRYIGPFEILRTVGEVAYELALPPVFSAIHPVFHVSMLRRYVPDESHVLQYDAVELD 1707
Query: 732 DNLTVETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
D LT PV I R+++RLR + I +VKV W E ATWE E M + S F
Sbjct: 1708 DRLTFVEEPVAILARDVRRLRSRAIPVVKVRWRHRPVEEATWETEQEMREQFPSLF 1763
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 523 bits (1347), Expect = e-147
Identities = 255/534 (47%), Positives = 370/534 (68%), Gaps = 4/534 (0%)
Query: 258 PGKANVVADVLSRKTLHMYALMVK-ELELIEQFGELSLVSELTPDGVRLGML---KLTSN 313
PGKANVVAD LSR ++ + + EL + L+ + D G+ K S+
Sbjct: 1062 PGKANVVADSLSRLSMGSTTHIEEGRRELAKDMHRLACLGVRFTDSTEGGIAVTSKAESS 1121
Query: 314 ILEEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEG 373
++ E+K Q +D L++ V + + F + VL ++ R+CVP V L+ ++++E
Sbjct: 1122 LMSEVKEKQDQDPILLELKANVQKQRVLAFEQGGDGVLRYQGRLCVPMVDGLQERVMEEA 1181
Query: 374 HRSSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFV 433
H S S+HPG+TKMY+DL+ +WW GMKK IAEFV C CQ+ +EHQRP GL Q + +
Sbjct: 1182 HSSRYSVHPGSTKMYRDLREFYWWNGMKKGIAEFVAKCPNCQQVKVEHQRPGGLAQNIEL 1241
Query: 434 PEWTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIV 493
PEW W+ I+MDF+ LP++ + D+IWVIVDR+TKS HF+P+KT+ S A++YI++IV
Sbjct: 1242 PEWKWEMINMDFITGLPRSRRQHDSIWVIVDRMTKSAHFLPVKTTHSAEDYAKLYIQEIV 1301
Query: 494 RLHGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRA 553
RLHG+P SI+SDR +FT+ FW+S Q LG+K+SLS+A+HPQTDGQ ERTIQ+LED+LRA
Sbjct: 1302 RLHGVPISIISDRGAQFTAQFWKSFQKGLGSKVSLSTAFHPQTDGQAERTIQTLEDMLRA 1361
Query: 554 CVLEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEV 613
CV++ +WD+ LPLIEF YNNS+HSSI+MAP+EALYGRRCR+P+ WFE GE+ ++ P++
Sbjct: 1362 CVIDFKSNWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCRSPIGWFEVGEARLIGPDL 1421
Query: 614 VQETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKL 673
V + EKVK+IQE++K +QS KSY D RR+ +EF+V D V+L V+P+ GV K KL
Sbjct: 1422 VHQAMEKVKVIQERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGVMRFGKKGKL 1481
Query: 674 TPRFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDN 733
+PR++GP+ ++++VG VAY + LP L+ +H VFH+ L+K + D S ++ + ++++DN
Sbjct: 1482 SPRYIGPYRIVQRVGSVAYELELPQELAAVHPVFHISMLKKCIGDPSLILPTESVKIKDN 1541
Query: 734 LTVETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
L+ E PV+I DR+++RLR K++ VKV+W E ATWE E M Y F
Sbjct: 1542 LSYEEVPVQILDRQVRRLRTKDVASVKVLWRNQFVEEATWEAEEDMKKRYPHLF 1595
>gb|AAL59229.1| gag-pol [Zea mays]
Length = 1470
Score = 522 bits (1344), Expect = e-146
Identities = 259/539 (48%), Positives = 368/539 (68%), Gaps = 14/539 (2%)
Query: 258 PGKANVVADVLSRK------TLHMYALMVKELELIEQFGELSLVSELTPDGVRLGMLKLT 311
PGKANVVAD LSRK T H LM +EL E+ ++ + V ++++
Sbjct: 939 PGKANVVADALSRKGQVNNITTH---LMSQEL-----CWEMERLNLGFLNNVEATVMEVE 990
Query: 312 SNILEEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILD 371
S + EEI+ GQ+ D ++ + L+ GK DF DE + F+ R+CVP++ L++ IL
Sbjct: 991 STLEEEIRKGQESDEKIKEIKALIGLGKAPDFTEDEQGTIWFKKRICVPEIEHLRQLILR 1050
Query: 372 EGHRSSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPL 431
E H S+ SIHPG+TKMYQDLK +WW G+K+++A V C VCQ+ EHQRP+GL+QPL
Sbjct: 1051 EAHDSAYSIHPGSTKMYQDLKEKYWWYGLKRDVATHVALCDVCQRVKAEHQRPAGLLQPL 1110
Query: 432 FVPEWTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQ 491
VPEW W+ ISMDF+ LP+T +D+IWVIVDRLTK HF+P+KT+ S A+LAE+Y+ +
Sbjct: 1111 KVPEWKWEEISMDFIVGLPRTRDGYDSIWVIVDRLTKVAHFIPVKTTYSGAQLAELYMSR 1170
Query: 492 IVRLHGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLL 551
IV LHG+P IVSDR +FTS FW+ L ++ TKL+ SSAYHPQTDGQTERT Q LED+L
Sbjct: 1171 IVCLHGVPKKIVSDRGTQFTSRFWKRLHESMDTKLNFSSAYHPQTDGQTERTNQVLEDML 1230
Query: 552 RACVLEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAP 611
RAC L+ G SWD+ LP EF+YNNS+ +S++MAPFEALYGR+CRTPL W ++GES + P
Sbjct: 1231 RACALKHGRSWDKSLPYAEFSYNNSYQASLKMAPFEALYGRKCRTPLYWNQTGESQVFGP 1290
Query: 612 EVVQETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCR 671
E++QE ++V++I+E +K +QS KSY D RR+++ F+VGD V+L V+P+ G+
Sbjct: 1291 EILQEAEKQVQIIRENLKTAQSRQKSYADNRRRELMFEVGDFVYLKVSPMRGMKRFKVKG 1350
Query: 672 KLTPRFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVR 731
KL+PR++GPF ++E+ G VAY++ LP LS++H+VFHV +L+K + + +++L V
Sbjct: 1351 KLSPRYIGPFKILERKGEVAYQLELPDRLSDVHDVFHVSQLKKCLRVPEEQLPMEELNVN 1410
Query: 732 DNLTVETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCFLQV 790
++LT +PVRI + + R K I + KV W + + ATWE E + + F +V
Sbjct: 1411 EDLTYSEYPVRILETSRRITRSKVINMCKVQWSHHSEDEATWEREDELRAEFPQLFSEV 1469
>gb|AAO45752.1| pol protein [Cucumis melo]
Length = 923
Score = 521 bits (1343), Expect = e-146
Identities = 263/531 (49%), Positives = 354/531 (66%), Gaps = 1/531 (0%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKELELIEQFGELSLVSELTPDGVRLGMLKLTSNILEE 317
PGKANVVAD LSRK H AL+ ++ L + + ++L L + + +
Sbjct: 391 PGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVLVGAVTMQLAQLTVQPTLRQR 450
Query: 318 IKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHRSS 377
I + Q D LV++ L G+ +F L + L+F R+CVP +K ++L E H S
Sbjct: 451 IIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSP 510
Query: 378 LSIHPGATKMYQDLKRLF-WWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPEW 436
S+HPG+T+ + F MK+E+AEFV CLVCQ+ Q+P+GL+QPL +PEW
Sbjct: 511 FSMHPGSTEDVSGPEAGFIGGRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEW 570
Query: 437 TWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRLH 496
W+++SMDF+ LP+T + F IWV+VDRLTKS HFVP K++ + ++ A++Y+ +IVRLH
Sbjct: 571 KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLH 630
Query: 497 GIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACVL 556
G+P SIVSDRD RFTS FW+ LQ A+GT+L S+A+HPQTDGQTER Q LED+LRAC L
Sbjct: 631 GVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACAL 690
Query: 557 EQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQE 616
E SWD L L+EF YNNS+ ++I MAPFEALYGR CR+P+CW E GE ++ PE+VQ
Sbjct: 691 EFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQS 750
Query: 617 TTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTPR 676
T E ++ I+ +M +QS KSY D RRKD+EF+VGD VFL V P+ GV + KL+PR
Sbjct: 751 TNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPR 810
Query: 677 FVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLTV 736
FVGPF+++E++G VAYR+ALPPSLS +H+VFHV LRKYV D SHV+ + LE+ +NL+
Sbjct: 811 FVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY 870
Query: 737 ETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV + R +K LR K+I LVKV+W E ATWE E M Y F
Sbjct: 871 VEQPVEVLARGVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELF 921
>emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar-group)]
gi|50930427|ref|XP_474741.1| OSJNBa0059D20.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 516 bits (1330), Expect = e-145
Identities = 253/532 (47%), Positives = 363/532 (67%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK +H L ++ + EL E+ +L+L + P G ++ L + +
Sbjct: 940 PGKANVVADALSRK-IHCNHLRMEGMVPELREEIAQLNL--HIVPRG-QINTLDIQPLLR 995
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
+I+ QK++ E+ + + G+ +F DE DVL ++ R+ VP+ L+ IL E H
Sbjct: 996 TQIEEAQKDNEEVREVKERLAAGRAKEFSTDEKDVLWYKKRIYVPEQGGLRGLILKEAHE 1055
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S+ S+HPG+TKMYQDLK +WWP MK+++AE+V C VCQK EHQRP+GL+QPL +PE
Sbjct: 1056 SAYSLHPGSTKMYQDLKEGYWWPNMKRDVAEYVALCDVCQKVKAEHQRPAGLLQPLRIPE 1115
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT+ +D+IWVIVDRLTK+ F+P+KT+ S A+LAE+Y+ +IV L
Sbjct: 1116 WKWDEIGMDFIVGLPKTATGYDSIWVIVDRLTKTARFIPVKTNYSSAKLAELYMTRIVCL 1175
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HG+P I+SDR +FTS+FWE + ALG+ L+ S+AYHPQTDGQTERT Q LED+LRAC
Sbjct: 1176 HGVPKKIISDRGTQFTSHFWEKVHEALGSYLAFSTAYHPQTDGQTERTNQVLEDMLRACA 1235
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ W+ CLP EF+YNNSF +S++M+P EAL+GRRCRTPL W E+GE A+ P+++Q
Sbjct: 1236 LDFSKDWERCLPYAEFSYNNSFQASLKMSPNEALFGRRCRTPLMWSETGERAVFGPDIIQ 1295
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E EKV++I++++K +QS KSY D RR+++EF+ GD+++L V+P+ G KL P
Sbjct: 1296 EAEEKVRLIRDRLKIAQSRQKSYADTRRRNLEFKEGDYIYLKVSPMRGTKRFKVKGKLAP 1355
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
R+VGPF +I + G VAY++ LP +++++H VFHV +L+K + ++++ + ++LT
Sbjct: 1356 RYVGPFQIIARRGEVAYQLQLPENIADVHPVFHVSQLKKCLRVPEEQAPLEEVHISNDLT 1415
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
P+RI D KR R K + KV W T E ATWE E + Y F
Sbjct: 1416 YPEHPIRILDEAAKRTRSKVWRMYKVQWSNHTEEEATWESEEFLRTEYPHLF 1467
>gb|AAP52881.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532584|ref|NP_920594.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|21672037|gb|AAM74399.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1821
Score = 516 bits (1328), Expect = e-144
Identities = 265/532 (49%), Positives = 354/532 (65%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L V+ + EL +Q L+L + GV L L+ +L
Sbjct: 1282 PGKANVVADALSRKS-HCNTLNVRGIPPELSQQMEALNL--SIVGHGV-LAALEAKPTLL 1337
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
++I+ QK D ++ + + QGK F DE+ L +RVCVPD +LK+ IL E H
Sbjct: 1338 DQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPDDRELKQLILQEAHE 1397
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S SIHPG+TKMY DLK +WW MK+EIAEFV C VCQ+ EHQRP+GL+QPL VPE
Sbjct: 1398 SPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPE 1457
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT +D+IWV+VDRLTK F+P+KT+ +LAE+Y +IV L
Sbjct: 1458 WKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSL 1517
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HG+P IVSDR +FTS+FW+ LQ LGT+L+ S+AYHPQTDGQTER Q LED+LRACV
Sbjct: 1518 HGVPKRIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACV 1577
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ G +WD+ LP EF+YNNS+ +SI+MAP+EALYGR+CRTPL W + GES + ++++
Sbjct: 1578 LDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILR 1637
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E KV++I++ +K +QS KSY D RR+D+EF V D V+L V P+ GV KL P
Sbjct: 1638 EAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAP 1697
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
R+VGPF ++ + G VAY++ LP SL N+H+VFHV +L+K + S + +EVR++LT
Sbjct: 1698 RYVGPFRIVARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLT 1757
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV+I D +R R + I KV W E ATWE E + ++ F
Sbjct: 1758 YVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 1809
>gb|AAU44125.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1474
Score = 516 bits (1328), Expect = e-144
Identities = 265/532 (49%), Positives = 353/532 (65%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L V+ + EL +Q L+L + G L L+ +L
Sbjct: 935 PGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SIVSRGF-LAALEAKPTLL 990
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
++I+ QK D ++ + + QGK F DE+ L +RVCVPDV +LK+ IL E H
Sbjct: 991 DQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPDVRELKQLILQEAHE 1050
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S SIHPG+TKMY DLK +WW MK+EIAEFV C VCQ+ EHQRP+GL+QPL VPE
Sbjct: 1051 SRYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPE 1110
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT +D+IWV+VDRLTK F+P+KT+ +LAE+Y +IV L
Sbjct: 1111 WKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSL 1170
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HG+P IVSDR +FTS+FW+ LQ LGT+L+ S+AYHPQTDGQTER Q LED+LRACV
Sbjct: 1171 HGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACV 1230
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ G +WD+ LP EF+YNNS+ +SI+MAP+EALYGR+CRTPL W + GES + ++++
Sbjct: 1231 LDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLMWDQVGESQVFGTDILR 1290
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E KV+ I++ +K +QS KSY D RR+D+EF V D V+L V P+ GV KL P
Sbjct: 1291 EAEAKVRTIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFRTKGKLAP 1350
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
R+VGPF ++ + G VAY++ LP SL N+H+VFHV +L+K + S + +EVR++LT
Sbjct: 1351 RYVGPFRIVARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLT 1410
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV+I D +R R + I KV W E ATWE E + ++ F
Sbjct: 1411 YVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 1462
>gb|AAP52850.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532522|ref|NP_920563.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|13992688|gb|AAK51582.1| Putative retroelement [Oryza
sativa]
Length = 2447
Score = 515 bits (1327), Expect = e-144
Identities = 266/532 (50%), Positives = 354/532 (66%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L V+ + EL +Q L+L + G L L+ +L
Sbjct: 1908 PGKANVVADALSRKS-HCNTLGVRGIPPELNQQMEALNL--SIVSRGF-LATLEAKPTLL 1963
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
++I+ QK D ++ + + QGK F DE+ L R+RVCVPDV +LK+ IL E H
Sbjct: 1964 DQIREAQKNDPDMRGLLKNMKQGKAAGFIEDEHGTLWNRNRVCVPDVRELKQLILQEAHE 2023
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S SIHPG+TKMY DLK +WW MK+EIAEFV C VCQ+ EHQRP+GL+QPL VPE
Sbjct: 2024 SPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPE 2083
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT +D+IWV+VDRLTK F+P+KT+ +LAE+Y +IV L
Sbjct: 2084 WKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSL 2143
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HG+P IVSDR+ +FTS+FW+ LQ LGT+L+ S+AYHPQTDGQTER Q LED+L ACV
Sbjct: 2144 HGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLHACV 2203
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ G +WD+ LP EF+YNNS+ +SI+MAP+EALYGR+CRTPL W + GES + ++++
Sbjct: 2204 LDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILR 2263
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E KV+ I + +K +QS KSY D RR+++EF V D V+L V P+ GV KL P
Sbjct: 2264 EAEAKVRTIWDNLKVAQSRQKSYADNRRRNLEFAVDDFVYLRVTPLRGVHRFQTKGKLAP 2323
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
RFVGPF +I + G VAY++ LP SL N+H+VFHV +L+K + S + +EVR++LT
Sbjct: 2324 RFVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLT 2383
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV+I D +R R + I KV W E ATWE E+ + ++ F
Sbjct: 2384 YVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWERENELKAAHPDLF 2435
Score = 259 bits (661), Expect = 3e-67
Identities = 167/477 (35%), Positives = 250/477 (52%), Gaps = 46/477 (9%)
Query: 259 GKANVVADVLSRKTLHMYALMVKELELIEQFGELSLVSELTPDGVRLGMLKLTSNILEEI 318
GK N++AD LSR+ Y L+ + I FG LE I
Sbjct: 1117 GKENIIADALSRR----YTLLTQLDYKI--FG------------------------LETI 1146
Query: 319 KNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFR-DRVCVPDVLDLKRQILDEGHRSS 377
K+ D + D + G+ + + ND +FR +++C+P ++ +L E H
Sbjct: 1147 KDQYAHDADFNDVLLHCKDGRTWN-KFVINDGFVFRANKLCIP-ASSVRLLLLQEAHGGG 1204
Query: 378 LSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPEWT 437
L H GA K + L F+WP M++++ FV C CQK+ P GL PL VP
Sbjct: 1205 LMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAK-SRLHPHGLYMPLPVPTVP 1263
Query: 438 WDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRLHG 497
W+ ISMDFV LP+T + D+I+V+VDR +K HF+P + + +A+++ +IVRLHG
Sbjct: 1264 WEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFREIVRLHG 1323
Query: 498 IPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACVLE 557
+P++IVSDRD +F S+FW +L A LGTKL S+ HPQTDGQTE ++L +LRA + +
Sbjct: 1324 VPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKK 1383
Query: 558 QGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQET 617
W+ECLP IEF YN S HS+ +M PF+ +YG R P+ S L + Q
Sbjct: 1384 NIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRA 1443
Query: 618 TEKVKM---IQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLT 674
+K+ +E ++ + K DK R+++ F+ GD +W++ L+ KL
Sbjct: 1444 ELMLKLHETTKENIERMNAKYKFAGDKGRRELTFEPGD--LVWLHLRKERFPDLRKSKLM 1501
Query: 675 PRFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVR 731
PR GPF V+ K+ AY+I LP + F+V L+ Y+ + D+LE R
Sbjct: 1502 PRADGPFKVLAKINENAYKIDLPADF-GVSPTFNVADLKPYLGEE------DELESR 1551
>gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
gi|37534498|ref|NP_921551.1| putative gag-pol protein
[Oryza sativa (japonica cultivar-group)]
Length = 1470
Score = 514 bits (1325), Expect = e-144
Identities = 254/532 (47%), Positives = 363/532 (67%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L ++ + EL E+ +L+L + P G ++ L + +
Sbjct: 940 PGKANVVADALSRKS-HCNHLRMEGMVPELREEIAQLNL--HIVPHG-QINTLDIQPLLR 995
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
+I+ QK++ E+ + + G+ +F DE +VL ++ R+ VP+ L+ IL E H
Sbjct: 996 TQIEEAQKDNEEVREVKERLAAGRAKEFSTDEKNVLWYKKRIYVPEQGGLRGLILKEAHE 1055
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S+ S+HPG+TKMYQDLK +WWP MK+++AE+V C VCQK EHQRP+GL+QPL +PE
Sbjct: 1056 SAYSLHPGSTKMYQDLKEGYWWPNMKRDVAEYVALCDVCQKVKAEHQRPAGLLQPLRIPE 1115
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT+ +D+IWVIVDRLTK+ F+P+KT+ S A+LAE+Y+ +IV L
Sbjct: 1116 WKWDEIGMDFIVGLPKTATGYDSIWVIVDRLTKTARFIPVKTNYSSAKLAELYMTRIVCL 1175
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HGIP I+SDR +FTS+FWE + ALG+ L+ S+AYHPQTDGQTERT Q LED+LRAC
Sbjct: 1176 HGIPKRIISDRGTQFTSHFWEKVHEALGSYLTFSTAYHPQTDGQTERTNQVLEDMLRACA 1235
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ W+ CLP EF+YNNSF +S+RM+P EAL+GRRCRTPL W E+GE A+ P+++Q
Sbjct: 1236 LDFSKDWERCLPYAEFSYNNSFQASLRMSPNEALFGRRCRTPLMWSETGERAVFGPDIIQ 1295
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E EKV +I++++K +QS KSY D RR+++EF+ GD+V+L V+P+ G KL P
Sbjct: 1296 EAEEKVHLIRDRLKVAQSRQKSYADTRRRNLEFKEGDYVYLKVSPMRGTKRFKVKGKLAP 1355
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
R+VGPF +I + G VAY++ LP +++++H VFHV +L+K + + ++++ + ++LT
Sbjct: 1356 RYVGPFQIIARRGEVAYQLQLPENIADVHPVFHVSQLKKCLRVSEEQAPLEEIHISNDLT 1415
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
P+RI D KR R K + KV W T + ATWE E + Y F
Sbjct: 1416 YPKHPIRILDEAEKRTRSKVWHMYKVQWSNHTEDEATWESEEFLRTEYPHLF 1467
>gb|AAV44060.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|55168118|gb|AAV43985.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1772
Score = 514 bits (1325), Expect = e-144
Identities = 265/532 (49%), Positives = 353/532 (65%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L V+++ EL +Q L+L + G L L+ +L
Sbjct: 1233 PGKANVVADALSRKS-HCNTLNVRDIPPELNQQMEALNL--SIVGRGF-LAALEAKPTLL 1288
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
++I+ QK D ++ + + QGK F DE+ L RVCVPD +LK+ IL E H
Sbjct: 1289 DQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPDNRELKQLILQEAHE 1348
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S SIHPG+TKMY DLK +WW MK+EIAEFV C VCQ+ EHQRP+GL+QPL VPE
Sbjct: 1349 SPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPE 1408
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT +D+IWV+VDRLTK F+P+KT+ +LAE+Y +IV L
Sbjct: 1409 WKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSL 1468
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HG+P IVSDR +FTS+FW+ LQ LGT+L+ S+AYHPQTDGQTER Q LED+LRACV
Sbjct: 1469 HGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACV 1528
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ G +WD+ LP EF+YNNS+ +SI+MAP+EALYGR+CRTPL W + GES + ++++
Sbjct: 1529 LDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQLFGTDILR 1588
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E KV++I++ +K +QS KSY D RR+D+EF V D V+L V P+ GV KL P
Sbjct: 1589 EDEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAP 1648
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
R+VGPF +I + G VAY++ LP SL N+H+VFHV +L+K + S + +EVR++LT
Sbjct: 1649 RYVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLT 1708
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV+I D +R R + I KV W E ATWE E + ++ F
Sbjct: 1709 YVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 1760
>gb|AAT73646.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1764
Score = 514 bits (1325), Expect = e-144
Identities = 266/532 (50%), Positives = 352/532 (66%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L V+ + EL +Q L+L + G L L+ +L
Sbjct: 1225 PGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SMVGRGF-LAALEAKPTLL 1280
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
++I+ QK D ++ + + QGK F DE+ L RVCVPD +LK+ IL E H
Sbjct: 1281 DQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPDSRELKQLILQEAHE 1340
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S SIHPG+TKMY DLK +WW MK+EIAEFV C VCQ+ EHQRP+GL+QPL VPE
Sbjct: 1341 SPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPE 1400
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT +D+IWVIVDRLTK F+P+KT+ +LAE+Y +IV L
Sbjct: 1401 WKWDEIGMDFITGLPKTQGGYDSIWVIVDRLTKVARFIPVKTTYGGNKLAELYFARIVSL 1460
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HGIP IVSDR +FTS+FW+ LQ LGT+L+ S+AYHPQTDGQTER Q LED+LRACV
Sbjct: 1461 HGIPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACV 1520
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ G +WD+ LP EF+YNNS+ +SI+MAP+EALYGR+CRTPL W + GES + ++++
Sbjct: 1521 LDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILR 1580
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E KV++I++ +K +QS KSY D RR+D+EF V D V+L V P+ GV KL P
Sbjct: 1581 EAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFRTKGKLAP 1640
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
R+VGPF ++ + G VAY++ LP SL N+H+VFHV +L+K + S + +EVR++LT
Sbjct: 1641 RYVGPFRIVARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQANSEQIEVREDLT 1700
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV+I D +R R + I KV W E ATWE E + ++ F
Sbjct: 1701 YVEKPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 1752
>gb|AAP53126.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533074|ref|NP_920839.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22539073|gb|AAN01245.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1785
Score = 514 bits (1324), Expect = e-144
Identities = 267/532 (50%), Positives = 352/532 (65%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L V+ + EL +Q L+L + G L L+ +L
Sbjct: 1246 PGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SIVGRGF-LAALEAKPTLL 1301
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
++I+ QK D ++ + + QGK F DE+ L RVCVPD +LK+ IL E H
Sbjct: 1302 DQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPDSRELKQLILQEAHE 1361
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S SIHPG+TKMY DLK +WW MK+EIAEFV C VCQ+ EHQRP+GL+QPL VPE
Sbjct: 1362 SPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPE 1421
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT +D+IWVIVDRLTK F+P+KT+ +LAE+Y +IV L
Sbjct: 1422 WKWDEIGMDFITGLPKTQGGYDSIWVIVDRLTKVARFIPVKTTYGGNKLAELYFARIVSL 1481
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HGIP IVSDR +FTS+FW+ LQ LGT+L+ S+AYHPQTDGQTER Q LED+LRACV
Sbjct: 1482 HGIPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACV 1541
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ G +WD+ LP EF+YNNS+ +SI+MAP+EALYGR+CRTPL W + GES + ++++
Sbjct: 1542 LDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILR 1601
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E KV++I++ +K +QS KSY D RR+D+EF V D V+L V P+ GV KL P
Sbjct: 1602 EAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAP 1661
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
R+VGPF +I + G VAY++ LP SL N+H+VFHV +L+K + S + +EVR++LT
Sbjct: 1662 RYVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADPEQIEVREDLT 1721
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV+I D +R R + I KV W E ATWE E + ++ F
Sbjct: 1722 YVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 1773
>gb|AAP52925.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532672|ref|NP_920638.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22725933|gb|AAN04943.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1803
Score = 514 bits (1324), Expect = e-144
Identities = 266/532 (50%), Positives = 352/532 (66%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L V+ + EL +Q L+L + G L L+ +L
Sbjct: 1264 PGKANVVADALSRKS-HCNTLNVRSIPPELNQQMEALNL--SIVGRGF-LAALEAKPTLL 1319
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
++I+ QK D ++ + + QGK F DE+ L RVCVPD +LK+ IL E H
Sbjct: 1320 DQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPDNRELKQLILQEAHE 1379
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S SIHPG+TKMY DLK +WW MK+EIAEFV C VCQ+ EHQRP+GL+QPL VPE
Sbjct: 1380 SPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPE 1439
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT +D+IWVIVDRLTK F+P+KT+ +LAE+Y +IV L
Sbjct: 1440 WKWDEIGMDFITGLPKTQGGYDSIWVIVDRLTKVARFIPVKTTYGGNKLAELYFARIVSL 1499
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HGIP IVSDR +FTS+FW+ LQ LGT+L+ S+AYHPQTDGQTER Q LED+LRACV
Sbjct: 1500 HGIPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACV 1559
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ G +WD+ LP EF+YNNS+ +SI+MAP+EALYGR+CRTPL W + GES + ++++
Sbjct: 1560 LDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILR 1619
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E KV++I++ +K +QS KSY D RR+D+EF V D V+L V P+ GV KL P
Sbjct: 1620 EAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAP 1679
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
R+VGPF +I + G VAY++ LP SL N+H+VFHV +L+K + S + +E+R++LT
Sbjct: 1680 RYVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEIREDLT 1739
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV+I D +R R + I KV W E ATWE E + ++ F
Sbjct: 1740 YVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 1791
>gb|AAP52848.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532518|ref|NP_920561.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|13992686|gb|AAK51580.1| Putative retroelement [Oryza
sativa]
Length = 1023
Score = 514 bits (1324), Expect = e-144
Identities = 266/532 (50%), Positives = 353/532 (66%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L V+ + EL +Q L+L + G L L+ +L
Sbjct: 484 PGKANVVADALSRKS-HCNTLGVRGIPPELNQQMEALNL--SIVSRGF-LATLEAKPTLL 539
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
++I+ QK D ++ + + QGK F DE+ L R+RVCVPDV +LK+ IL E H
Sbjct: 540 DQIREAQKNDPDMRGLLKNMKQGKAAGFIEDEHGTLWNRNRVCVPDVRELKQLILQEAHE 599
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S SIHPG+TKMY DLK +WW MK+EIAEFV C VCQ+ EHQRP+GL+QPL VPE
Sbjct: 600 SPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPE 659
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT +D+IWV+VDRLTK F+P+KT+ +LAE+Y +IV L
Sbjct: 660 WKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSL 719
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HG+P IVSDR +FTS+FW+ LQ LGT+L+ S+AYHPQTDGQTER Q LED+L ACV
Sbjct: 720 HGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLHACV 779
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ G +WD+ LP EF+YNNS+ +SI+MAP+EALYGR+CRTPL W + GES + ++++
Sbjct: 780 LDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILR 839
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E KV+ I + +K +QS KSY D RR+++EF V D V+L V P+ GV KL P
Sbjct: 840 EAEAKVRTIWDNLKVAQSRQKSYADNRRRNLEFAVDDFVYLRVTPLRGVHRFQTKGKLAP 899
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
RFVGPF +I + G VAY++ LP SL N+H+VFHV +L+K + S + +EVR++LT
Sbjct: 900 RFVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLT 959
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV+I D +R R + I KV W E ATWE E+ + ++ F
Sbjct: 960 YVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWERENELKAAHPDLF 1011
>emb|CAE05072.2| OSJNBa0094P09.11 [Oryza sativa (japonica cultivar-group)]
Length = 976
Score = 514 bits (1324), Expect = e-144
Identities = 267/532 (50%), Positives = 352/532 (65%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L V+ + EL +Q L+L + G L L+ +L
Sbjct: 437 PGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SIVGRGF-LAALEAKPTLL 492
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
++I+ QK D ++ + + QGK F DE+ L RVCVPD +LK+ IL E H
Sbjct: 493 DQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPDSRELKQLILQEAHE 552
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S SIHPG+TKMY DLK +WW MK+EIAEFV C VCQ+ EHQRP+GL+QPL VPE
Sbjct: 553 SPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPE 612
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT +D+IWVIVDRLTK F+P+KT+ +LAE+Y +IV L
Sbjct: 613 WKWDEIGMDFITGLPKTQGGYDSIWVIVDRLTKVARFIPVKTTYGGNKLAELYFARIVSL 672
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HGIP IVSDR +FTS+FW+ LQ LGT+L+ S+AYHPQTDGQTER Q LED+LRACV
Sbjct: 673 HGIPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACV 732
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ G +WD+ LP EF+YNNS+ +SI+MAP+EALYGR+CRTPL W + GES + ++++
Sbjct: 733 LDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILR 792
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E KV++I++ +K +QS KSY D RR+D+EF V D V+L V P+ GV KL P
Sbjct: 793 EAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAP 852
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
R+VGPF +I + G VAY++ LP SL N+H+VFHV +L+K + S + +EVR++LT
Sbjct: 853 RYVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLT 912
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV+I D +R R + I KV W E ATWE E + ++ F
Sbjct: 913 YVEKPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 964
>emb|CAE05068.2| OSJNBa0094P09.7 [Oryza sativa (japonica cultivar-group)]
Length = 1804
Score = 514 bits (1324), Expect = e-144
Identities = 266/532 (50%), Positives = 352/532 (66%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L V+ + EL +Q L+L + G L L+ +L
Sbjct: 1265 PGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SIVGRGF-LAALEAKPTLL 1320
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
++I+ QK D ++ + + QGK F DE+ L RVCVPD +LK+ IL E H
Sbjct: 1321 DQIREAQKNDPDMHGLLKNMKQGKAASFTEDEHGTLWNGKRVCVPDSRELKQLILQEAHE 1380
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S SIHPG+TKMY DLK +WW MK+EIAEFV C VCQ+ EHQRP+GL+QPL VPE
Sbjct: 1381 SPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPE 1440
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT +D+IWVIVDRLTK F+P+KT+ +LAE+Y +IV L
Sbjct: 1441 WKWDEIGMDFITGLPKTQGGYDSIWVIVDRLTKVARFIPVKTTYGGNKLAELYFARIVSL 1500
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HGIP IVSDR +FTS+FW+ LQ LGT+L+ S+AYHPQTDGQTER Q LED+LRACV
Sbjct: 1501 HGIPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACV 1560
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ G +WD+ LP EF+YNNS+ +SI+MAP+EALYGR+CRTPL W + GES + ++++
Sbjct: 1561 LDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILR 1620
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E KV++I++ +K +QS KSY D RR+D+EF V D V+L V P+ GV KL P
Sbjct: 1621 EAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAP 1680
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
R+VGPF ++ + G VAY++ LP SL N+H+VFHV +L+K + S + +EVR++LT
Sbjct: 1681 RYVGPFRIVARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLT 1740
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV+I D +R R + I KV W E ATWE E + ++ F
Sbjct: 1741 YVERPVKILDAMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 1792
>gb|AAT73694.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1778
Score = 514 bits (1324), Expect = e-144
Identities = 266/532 (50%), Positives = 352/532 (66%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L V+ + EL +Q L+L + G L L+ +L
Sbjct: 1239 PGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SIVGRGF-LAALEAKPTLL 1294
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
++I+ QK D ++ + + QGK F DE+ L RVCVPD +LK+ IL E H
Sbjct: 1295 DQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPDNRELKQLILQEAHE 1354
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S SIHPG+TKMY DLK +WW MK+EIAEFV C VCQ+ EHQRP+GL+QPL VPE
Sbjct: 1355 SPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPE 1414
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT +D+IWV+VDRLTK F+P+KT+ +LAE+Y +IV L
Sbjct: 1415 WKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSL 1474
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HGIP IVSDR +FTS+FW+ LQ LGT+L+ S+AYHPQTDGQTER Q LED+LRACV
Sbjct: 1475 HGIPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACV 1534
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ G +WD+ LP EF+YNNS+ +SI+MAP+EALYGR+CRTPL W + GES + ++++
Sbjct: 1535 LDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILR 1594
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E KV++I++ +K +QS KSY D RR+D+EF V D V+L V P+ GV KL P
Sbjct: 1595 EAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAP 1654
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
R+VGPF +I + G VAY++ LP SL N+H+VFHV +L+K + S + +EVR++LT
Sbjct: 1655 RYVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQANSEQIEVREDLT 1714
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV+I D +R R + I KV W E ATWE E + ++ F
Sbjct: 1715 YVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 1766
>gb|AAT73680.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1499
Score = 514 bits (1324), Expect = e-144
Identities = 267/532 (50%), Positives = 352/532 (65%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L V+ + EL +Q L+L + G L L+ +L
Sbjct: 960 PGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SIVGRGF-LAALEAKPTLL 1015
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
++I+ QK D ++ + + QGK F DE+ L RVCVPD +LK+ IL E H
Sbjct: 1016 DQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPDSRELKQLILQEAHE 1075
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S SIHPG+TKMY DLK +WW MK+EIAEFV C VCQ+ EHQRP+GL+QPL VPE
Sbjct: 1076 SPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPE 1135
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT +D+IWVIVDRLTK F+P+KT+ +LAE+Y +IV L
Sbjct: 1136 WKWDEIGMDFITGLPKTQGGYDSIWVIVDRLTKVARFIPVKTTYGGNKLAELYFARIVSL 1195
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HGIP IVSDR +FTS+FW+ LQ LGT+L+ S+AYHPQTDGQTER Q LED+LRACV
Sbjct: 1196 HGIPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACV 1255
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ G +WD+ LP EF+YNNS+ +SI+MAP+EALYGR+CRTPL W + GES + ++++
Sbjct: 1256 LDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILR 1315
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E KV++I++ +K +QS KSY D RR+D+EF V D V+L V P+ GV KL P
Sbjct: 1316 EAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAP 1375
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
R+VGPF +I + G VAY++ LP SL N+H+VFHV +L+K + S + +EVR++LT
Sbjct: 1376 RYVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLT 1435
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV+I D +R R + I KV W E ATWE E + ++ F
Sbjct: 1436 YVEKPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 1487
>gb|AAP52927.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532676|ref|NP_920640.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22725935|gb|AAN04945.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1825
Score = 514 bits (1323), Expect = e-144
Identities = 265/532 (49%), Positives = 353/532 (65%), Gaps = 6/532 (1%)
Query: 258 PGKANVVADVLSRKTLHMYALMVKEL--ELIEQFGELSLVSELTPDGVRLGMLKLTSNIL 315
PGKANVVAD LSRK+ H L V+ + EL +Q L+L + G L L+ +L
Sbjct: 1286 PGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SIVSRGF-LAALEAKPTLL 1341
Query: 316 EEIKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHR 375
++I+ QK D ++ + + QGK F +E+ L +RVCVPD +LK+ IL E H
Sbjct: 1342 DQIREAQKNDPDMHGLLKNMKQGKAAGFTEEEHGTLWNGNRVCVPDNRELKQLILQEAHE 1401
Query: 376 SSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPE 435
S SIHPG+TKMY DLK +WW MK+EIAEFV C VCQ+ EHQRP+GL+QPL VPE
Sbjct: 1402 SPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPE 1461
Query: 436 WTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRL 495
W WD I MDF+ LPKT +D+IWV+VDRLTK F+P+KT+ +LAE+Y +IV L
Sbjct: 1462 WKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSL 1521
Query: 496 HGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACV 555
HG+P IVSDR +FTS+FW+ LQ LGT+L+ S+AYHPQTDGQTER Q LED+LRACV
Sbjct: 1522 HGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACV 1581
Query: 556 LEQGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQ 615
L+ G +WD+ LP EF+YNNS+ +SI+MAP+EALYGR+CRTPL W + GES + ++++
Sbjct: 1582 LDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILR 1641
Query: 616 ETTEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTP 675
E KV++I+E +K +QS KSY D RR+D+EF V D V+L V P+ GV KL P
Sbjct: 1642 EAEAKVRIIRENLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAP 1701
Query: 676 RFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLT 735
R+VGPF +I + G VAY++ LP SL N+H+VFHV +L+K + S + +EVR++LT
Sbjct: 1702 RYVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLT 1761
Query: 736 VETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCF 787
PV+I D +R R + I KV W E ATWE E + ++ F
Sbjct: 1762 YVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 1813
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.340 0.151 0.500
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,176,968,571
Number of Sequences: 2540612
Number of extensions: 45702220
Number of successful extensions: 157451
Number of sequences better than 10.0: 2106
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 532
Number of HSP's that attempted gapping in prelim test: 152464
Number of HSP's gapped (non-prelim): 3051
length of query: 796
length of database: 863,360,394
effective HSP length: 136
effective length of query: 660
effective length of database: 517,837,162
effective search space: 341772526920
effective search space used: 341772526920
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 79 (35.0 bits)
Medicago: description of AC146806.4