BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146794.6 + phase: 0
(1018 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 550 e-155
gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum] 544 e-153
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 540 e-151
pir||T09671 RPE15 protein - alfalfa (fragment) gi|840619|gb|AAB5... 261 6e-68
gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum... 224 1e-56
gb|AAT39964.1| putative gag polyprotein [Solanum demissum] 152 7e-35
emb|CAD41628.3| OSJNBa0091D06.8 [Oryza sativa (japonica cultivar... 112 6e-23
ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica... 111 1e-22
gb|AAU89777.1| gag-pol polyprotein-like [Solanum tuberosum] 105 8e-21
emb|CAC44143.1| putative gag polyprotein [Cicer arietinum] 99 6e-19
gb|AAT39963.1| putative polyprotein [Solanum demissum] 88 1e-15
gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sati... 82 7e-14
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi... 81 2e-13
gb|AAT85304.1| reverse transcriptase (RNA-dependent DNA polymera... 81 2e-13
gb|AAT77888.1| putative retrotransposon gag protein [Oryza sativ... 80 3e-13
ref|XP_474632.1| OSJNBa0039G19.2 [Oryza sativa (japonica cultiva... 79 6e-13
emb|CAB80803.1| AT4g03800 [Arabidopsis thaliana] gi|3695395|gb|A... 78 2e-12
pir||E96549 hypothetical protein F11M15.5 [imported] - Arabidops... 78 2e-12
gb|AAP53041.1| putative retroelement [Oryza sativa (japonica cul... 77 2e-12
gb|AAP52791.1| putative pol polyprotein [Oryza sativa (japonica ... 77 3e-12
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 550 bits (1417), Expect = e-155
Identities = 363/1013 (35%), Positives = 536/1013 (52%), Gaps = 108/1013 (10%)
Query: 77 EERMEELAKELRHEIKANQGNADSFKTQDLCLVPKVDVPKKFKIPDFDRYNGLTCPQNHI 136
+ +++ LA+++R N+ F ++ LV + +P KFK P FD+YNG +CP+ H+
Sbjct: 131 DRKVDALAEKIR---AMECQNSLGFDVTNMGLVEGLRIPYKFKAPSFDKYNGTSCPRTHV 187
Query: 137 IKYVRKMGNYKDNDSLMIHCFQDSLMEDATEWYTSLSKNDIHTFDELAAAFKSHYGFNTR 196
Y RK+ Y D++ + ++ FQDSL + +WY L ++ I + +L AF Y N
Sbjct: 188 QAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKRDSIRCWKDLGEAFLRQYKHNMD 247
Query: 197 LKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMII 256
+ P+R L+SL QK ESF+EYAQRWR AAR+ P + E E+T F+ TL+ +++RM
Sbjct: 248 MAPSRTQLQSLCQKSGESFKEYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGS 307
Query: 257 AAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNASKRYGNGHHKKKETEVGMVSAGAG 316
+FS++V G R E ++ G I ++ ++SK+ G +++E E V
Sbjct: 308 CPFVSFSDVVICGERTESLIKTGKI----QDAGSSSSKKPFAGAPRRREGETNAVQYRRD 363
Query: 317 QSMATVAPINAAQMPPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPV 376
Q+ + + A +P P P Q Q V QQ +QQ P
Sbjct: 364 QNRSQRCQVAAVTIPA--------------------PQPRQQQQQRVQQPQQQQQQQRPY 403
Query: 377 QQQQQHQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQG 436
Q +Q+ R F +PM YAELLP LL G R PP LPP + ++++CDFH G
Sbjct: 404 QPRQRMPDRR--FDSLPMSYAELLPELLRLGMVELRT-MAPPTVLPPGYDANVRCDFHSG 460
Query: 437 ALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHA--TVNMIEVCE-EALRL 493
A GH E C AL++ V+ LID + F VP+V++NP+P H VN IE E E L +
Sbjct: 461 APGHHTEKCRALQHKVQDLIDAKAINFAP-VPNVVNNPMPQHGGHRVNNIEGKEAEDLVV 519
Query: 494 DVRNVATPLVPLHIKLCKASLFSHDHAKCLGCLRNPLGCFTVQDDIQSLMNDNFL----- 548
+V +V T L+ + +L ++S CLGC + GC ++ IQ +M++ L
Sbjct: 520 NVDDVQTSLLVVKGRLLNGGVYSGCDEDCLGCAESENGCDQLRTGIQGMMDEGCLQFSRA 579
Query: 549 -----TVSDVCVI-------------VPVFHDPPVK-SMPLKENAEPLVIRLPGLVPYTS 589
TVS + + P + PV S+P+ +A P I G +
Sbjct: 580 VKDRGTVSTITIYFKPSEGRGQRVVSAPATNGTPVTISVPVTISA-PTTIAASGRRAVEN 638
Query: 590 DRAIPYKYNATIIENG--------VEVPLVSLAVMN----------NTAEGTSAALRSGR 631
RA+P+KY+ N V V++ + N + G RSGR
Sbjct: 639 SRAVPWKYDNAYRSNRRAESQTRPVNQAPVTIGLPNRVPATVGPAVDNVGGPGGFTRSGR 698
Query: 632 V---RPPIDKTATPTVPPIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILRLIKRSDYKI 688
+ +P D A K + P+ ++ P S E +++E +++IK+SDYKI
Sbjct: 699 LFAPQPLRDNNAEALAKAKGKQAVVEEEPVQKEA--PEGSFE-KDVEEFMKIIKKSDYKI 755
Query: 689 VDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWF 748
VDQL QTPSKISILSLLL S AHR+ LLK+L AYV E++V+ ++ N++ + F
Sbjct: 756 VDQLNQTPSKISILSLLLCSEAHRNALLKMLNLAYVPQEISVNQLEGVMANVSTRHGVGF 815
Query: 749 SEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRST 808
+ +L G++HN ALHI++ CK +LS+VLVDTGSSLNV+PK L ++ G L S
Sbjct: 816 TNLDLTPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNVLPKQILKKIDVEGFVLTPSD 875
Query: 809 FLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTL 868
+V+AFDG+++SV GE+ LP+ IGPE F I F VMDI +YSCLLGRPWIH AGAV+STL
Sbjct: 876 LIVRAFDGSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTL 935
Query: 869 HQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEA-GSAEGT---AFQGLTVEG---TEPK 921
HQKLK+ +G++VT+ GEE LVS LSSF +E G T AF+ + +E E +
Sbjct: 936 HQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETLCQAFETVALEKVAYAEQR 995
Query: 922 RDGTAMASLKDAQRAVQEGQAAGWGRLIQLRENKHKEGLGFSPTSGVSTG-----AFYSA 976
+ G ++ S K A+ V G+A GWG+++ L + K G+G+ P G F SA
Sbjct: 996 KPGASITSYKQAKEVVDSGKAEGWGKMVYLPVKEDKFGVGYEPLQAEQNGQAGPSTFTSA 1055
Query: 977 GFVNAITEEATGFGP-----------RPVFVTPGGIARDWDAIDIPSIMHVSE 1018
G +N ATG RP PGG +W A ++ + ++E
Sbjct: 1056 GLMNHGDVSATGSEDCDSDCDLDNWVRP--CAPGGSINNWTAEEVVQVTLLTE 1106
>gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum]
Length = 1105
Score = 544 bits (1401), Expect = e-153
Identities = 351/972 (36%), Positives = 519/972 (53%), Gaps = 95/972 (9%)
Query: 77 EERMEELAKELRHEIKANQGNADSFKTQDLCLVPKVDVPKKFKIPDFDRYNGLTCPQNHI 136
+ +++ LA+++R N+ SF ++ LV + +P KFK P FD+YN +CP+ H+
Sbjct: 131 DRKVDALAEKIR---AMECQNSLSFDVTNMGLVEGLRIPYKFKAPSFDKYNDTSCPRTHV 187
Query: 137 IKYVRKMGNYKDNDSLMIHCFQDSLMEDATEWYTSLSKNDIHTFDELAAAFKSHYGFNTR 196
Y RK+ Y D++ + ++ FQDSL + +WY L ++ I + +L AF Y N
Sbjct: 188 QAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKRDSIRCWRDLGEAFLRQYKHNMD 247
Query: 197 LKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMII 256
+ P+R L+SL QK ESF+EYAQRWR AAR+ P + E E+T F+ TL+ +++RM
Sbjct: 248 MAPSRTQLQSLCQKSGESFKEYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGS 307
Query: 257 AAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNASKRYGNGHHKKKETEVGMVSAGAG 316
+FS++V G R E ++ G I + ++SK+ G +++E E +V
Sbjct: 308 CPFGSFSDVVICGERTESLIKTGKI----QDVGSSSSKKPFAGAPRRREGETNVVQHRRD 363
Query: 317 QSMATVAPINAAQMPPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPV 376
Q+ A +P P P Q Q V QQ +QQ P
Sbjct: 364 QNRIEYRQAAAVTIPA--------------------PQPRQQQQQRVQQPQQQQQQQRPY 403
Query: 377 QQQQQHQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQG 436
Q +Q+ R F +PM YAELLP LL G R PP LPP + ++++CDFH G
Sbjct: 404 QPRQRMPDRR--FDSLPMSYAELLPELLRLGMVELRT-MAPPTVLPPGYDANVRCDFHSG 460
Query: 437 ALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHA--TVNMIEVCE-EALRL 493
A GH E C AL++ V+ LID + F VP+V++NP+P H VN IE E E L +
Sbjct: 461 APGHHTEKCRALQHKVQDLIDAKAINFAP-VPNVVNNPMPQHGGHRVNNIEGKEAEDLVV 519
Query: 494 DVRNVATPLVPLHIKLCKASLFSHDHAKCLGCLRNPLGCFTVQDDIQSLMNDNFL----- 548
+V +V T L+ + +L ++S CLGC + GC ++ IQ +M++ L
Sbjct: 520 NVDDVQTSLLVVKGRLLNGGVYSGCDEDCLGCAESENGCDQLRAGIQGMMDEGCLQFSRA 579
Query: 549 -----TVSDVCVI-------------VPVFHDPPVK-SMPLKENAEPLVIRLPGLVPYTS 589
TVS + + P +D PV S+P+ +A P I G +
Sbjct: 580 VKDRGTVSTITIYFKPTEGRGQRVVSAPATNDTPVTISVPVTISA-PTTIVASGRRAVEN 638
Query: 590 DRAIPYKYNATIIENG--------VEVPLVSLAVMN----------NTAEGTSAALRSGR 631
R +P+KY+ N V V++ + N + G RSGR
Sbjct: 639 SRVVPWKYDNAYRSNRRAESQTRPVNQAPVTIGLPNRVPATVGPAVDNVGGPGGFTRSGR 698
Query: 632 V---RPPIDKTATPTVPPIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILRLIKRSDYKI 688
+ +P D A K + P+ ++ + + +++E +++IK+SDYKI
Sbjct: 699 LFAPQPLRDNNAEALAKAKGKQAVVEEEPVQKEAPE---GTFEKDVEEFMKIIKKSDYKI 755
Query: 689 VDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWF 748
VDQL QTPSKISILSLL+ S AHR+ LLK+L AYV E++V+ ++ N++ + F
Sbjct: 756 VDQLNQTPSKISILSLLMCSEAHRNALLKMLNLAYVPQEISVNQLEGVMANVSTRHGVGF 815
Query: 749 SEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRST 808
+ +LP G++HN ALHI++ CK +LS+VLVDTGSSLNV+P L ++ G L S
Sbjct: 816 TNLDLPPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNVLPNQILKKIDVEGFVLTPSD 875
Query: 809 FLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTL 868
+V+AFDG+++SV GE+ LP+ IGPE F I F VMDI +YSCLLGRPWIH AGAV+STL
Sbjct: 876 LIVRAFDGSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTL 935
Query: 869 HQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEA-GSAEGT---AFQGLTVEG---TEPK 921
HQKLK+ +G++VT+ GEE LVS LSSF +E G T AF+ + +E E +
Sbjct: 936 HQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETLCQAFETVALEKVAYAEQR 995
Query: 922 RDGTAMASLKDAQRAVQEGQAAGWGRLIQLRENKHKEGLGFSPTSGVSTG-----AFYSA 976
+ G ++ S K A+ V G+A GWG+++ L + K G+G+ P G F SA
Sbjct: 996 KPGASITSYKQAKEVVDSGKAEGWGKMVDLPVKEDKFGVGYEPLRAEQNGQAGPSTFTSA 1055
Query: 977 GFVNAITEEATG 988
G +N ATG
Sbjct: 1056 GLMNHGDVSATG 1067
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 540 bits (1390), Expect = e-151
Identities = 365/1017 (35%), Positives = 529/1017 (51%), Gaps = 117/1017 (11%)
Query: 77 EERMEELAKELRHEIKANQGNADSFKTQDLCLVPKVDVPKKFKIPDFDRYNGLTCPQNHI 136
+ +++ LA+++R N+ F ++ LV + +P KFK P FD+YNG +CP+ H+
Sbjct: 130 DRKVDALAEKIR---AMECQNSLGFDVTNMGLVEGLRIPYKFKAPSFDKYNGTSCPRTHV 186
Query: 137 IKYVRKMGNYKDNDSLMIHCFQDSLMEDATEWYTSLSKNDIHTFDELAAAFKSHYGFNTR 196
Y RK+ Y D++ + ++ FQDSL + +WY L + I + +L AF Y N
Sbjct: 187 QAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKSDSIRCWRDLGEAFLRQYKHNMD 246
Query: 197 LKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMII 256
+ P+R L+SL QK ESF+EYAQRWR AAR+ P + E E+T F+ TL+ +++RM
Sbjct: 247 MAPSRTQLQSLCQKSNESFKEYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGS 306
Query: 257 AAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNASKRYGNGHHKKKETEVGMVSAGAG 316
+FS++V G R E ++ G I + ++SK+ G +++E E V
Sbjct: 307 CPFGSFSDVVICGERTESLIKTGKI----QDVGSSSSKKPFAGAPRRREGETNAVQHRRD 362
Query: 317 QSMATVAPINAAQMPPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPV 376
Q+ A +P P Q P QQ +QQ P
Sbjct: 363 QNRIEYRQAAAVTIPAPQPRQQQQQRVQQP---------------------QQQQQQRPY 401
Query: 377 QQQQQHQQARPTFPPIPMLYAELLPTLLHRGH---CTTRQGKPPPDPLPPRFRSDLKCDF 433
Q +Q+ R F +PM YAELLP LL G CT PP LPP + ++++CDF
Sbjct: 402 QPRQRMPDRR--FDSLPMSYAELLPELLRLGLVELCTMA----PPTVLPPGYDANVRCDF 455
Query: 434 HQGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHA--TVNMIEVCE-EA 490
H GA GH E C AL++ V+ LID + F VP+V++NP+P H VN IE E E
Sbjct: 456 HSGAPGHHTEKCRALQHKVQDLIDANAINFAP-VPNVVNNPMPQHGGHRVNNIEGKEAED 514
Query: 491 LRLDVRNVATPLVPLHIKLCKASLFSHDHAKCLGCLRNPLGCFTVQDDIQSLMNDNFLTV 550
L +V +V T L+ + +L ++S CLGC + GC ++ IQ +M++ L
Sbjct: 515 LVDNVDDVQTSLLVVKSRLLNEGVYSGCDEDCLGCAESENGCDQLRAGIQGMMDEGCLQF 574
Query: 551 S-------DVCVIVPVF-----HDPPVKSMPLKENAEPLVIRLPGLV--PYT-------- 588
S V I F H V S P N P+ I +P + P T
Sbjct: 575 SRAVKDRGTVSTITIYFKPSEGHGQRVVSAPAT-NGTPVTIPVPVTISAPTTIVASGRRA 633
Query: 589 --SDRAIPYKY-----------------NATIIENGV--EVPLVSLAVMNNTAEGTSAAL 627
+ RA+P+KY N T + G+ VP ++N G
Sbjct: 634 VENSRAVPWKYDNAYRSNRRVESQTKPVNQTPVTIGLANRVPATVGPAVDNVG-GPGGFT 692
Query: 628 RSGRV---RPPIDKTATPTVPPIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILRLIKRS 684
RSGR+ +P D A K + P+ ++ P S E +++E +++IK+S
Sbjct: 693 RSGRLFAPQPLRDNNAEALAKAKGKQAVVEEEPVQKEA--PEGSFE-KDVEEFMKMIKKS 749
Query: 685 DYKIVDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACS 744
DYKIVDQL QTPSKISILSLLL S AHR+ LLK+L AYV E++V+ ++ N++
Sbjct: 750 DYKIVDQLNQTPSKISILSLLLCSEAHRNALLKMLNLAYVPQEISVNQLEGVMANVSTRH 809
Query: 745 NLWFSEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPL 804
+ F+ +LP G++HN ALHI++ CK +LS+VLVDTGSSLNV+PK L ++ G L
Sbjct: 810 GVGFTNLDLPPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNVLPKQILKKIDVEGFVL 869
Query: 805 RRSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAV 864
S +V+AFD +++SV GE+ LP+ IGPE F I F VMDI +YSCLLGRPWIH AGAV
Sbjct: 870 TPSDLIVRAFDRSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAV 929
Query: 865 TSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEA-GSAEGT---AFQGLTVEG--- 917
+STLHQKLK+ +G++VT+ GEE LVS LSSF +E G T F+ + +E
Sbjct: 930 SSTLHQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETLCQVFETVALEKVAY 989
Query: 918 TEPKRDGTAMASLKDAQRAVQEGQAAGWGRLIQLRENKHKEGLGFSPTSGVSTG-----A 972
E ++ G ++ S K A+ V G+A GWG+++ L + K G+G+ P G
Sbjct: 990 AEQRKPGVSITSYKQAKEVVDSGKAEGWGKMVDLPVKEDKFGVGYEPLQAEQNGQAGPST 1049
Query: 973 FYSAGFVNAITEEATGFGP-----------RPVFVTPGGIARDWDAIDIPSIMHVSE 1018
F SAG +N ATG RP PGG +W A ++ + ++E
Sbjct: 1050 FTSAGLMNHGDVSATGSEDCDSDCDLDNWVRP--CAPGGSINNWTAEEVVQVTLLTE 1104
>pir||T09671 RPE15 protein - alfalfa (fragment) gi|840619|gb|AAB50037.1| RPE15
gene product
Length = 219
Score = 261 bits (668), Expect = 6e-68
Identities = 133/192 (69%), Positives = 152/192 (78%), Gaps = 10/192 (5%)
Query: 225 AAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFE 284
AAAR++P LDEEE+TQTFLKTLKK++ ERMI++APNNFS+MVTMGTRLEEAVREGIIV E
Sbjct: 13 AAARVSPRLDEEELTQTFLKTLKKEHKERMIVSAPNNFSDMVTMGTRLEEAVREGIIVLE 72
Query: 285 KAESSVNASKRYGNGHHKKKET-EVGMVSAGAGQSMATVAPINAAQMPPSYPYAPYSQHP 343
K E S +A K+YGNGHHK+KE+ +VGMVS P+NA Q+P Y Y SQHP
Sbjct: 73 KGECSASAPKKYGNGHHKRKESKKVGMVSGNHD------TPVNATQLPLPYQYMQISQHP 126
Query: 344 FFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQHQQA-RPT--FPPIPMLYAELL 400
FFPPFY QYPLPPGQP VPVNA+AQQ++ Q P QQQQQ QQ RP FPPIPM YAELL
Sbjct: 127 FFPPFYQQYPLPPGQPPVPVNAMAQQVQHQPPAQQQQQQQQGPRPKTYFPPIPMRYAELL 186
Query: 401 PTLLHRGHCTTR 412
PTLL +GHC TR
Sbjct: 187 PTLLAKGHCVTR 198
>gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Length = 1784
Score = 224 bits (570), Expect = 1e-56
Identities = 185/615 (30%), Positives = 279/615 (45%), Gaps = 102/615 (16%)
Query: 385 ARPTFPPIPMLYAEL---LPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHD 441
A+ F PI YA L L TL + PPP L C + A GH+
Sbjct: 888 AKDEFTPIGESYASLFQKLRTLNVLSPIERKMSNPPPRNLD----YSQHCAYCSDAPGHN 943
Query: 442 VEGCYALKYIVKKLIDQGKLTFEN-NVPHVLDNPLPNHATVNMIEVCEEALRLDVRNVAT 500
+E C+ LK ++ LID ++ E+ N P++ NPLP H NM+E+ + VA
Sbjct: 944 IERCWYLKKAIQDLIDTRRIIVESPNGPNINQNPLPRHTETNMLEMVN-----NHEEVAV 998
Query: 501 PLVPLHIKL---CKASLFSHDHAKCLGCLRNPLGCFTVQD----------DIQSLMNDNF 547
P P+ +K+ ++S D K + P G + + I+ + D +
Sbjct: 999 PYKPI-LKVETGMESSTNVIDLTKIM-----PSGAESTSEKLTPSSAPILTIKGALEDVW 1052
Query: 548 LTVSDVCVIVPVFHDPPVKSMPLKENAEPLVIRLPGLVPYTSDRAIPYKYNATIIE-NGV 606
+ + ++VP D P+ + P++IR +P T+ +A+P+ Y T++ G
Sbjct: 1053 ASQREARLVVPRGPDKPILIVQ-GAYIPPVIIRPVSQLPMTNPKAVPWNYEPTVVTYEGK 1111
Query: 607 EVPLVSLAVMNNTAEGTSAALRSGRVRPPIDKTATPTVPPIDKTTPTDVSPINRDVSQPG 666
E+ N + RSGR T++ D Q
Sbjct: 1112 EI--------NEEVDEIGGMTRSGRC-----------------YALTELRKNKNDQMQVK 1146
Query: 667 RSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDH 726
+ + +E LR +K SDY IV+QL +TP++IS+LSLL+ S AHR ++K+L +A+V +
Sbjct: 1147 SPVTEGEAEEFLRKMKLSDYSIVEQLRKTPAQISLLSLLIHSDAHRKAVIKILNEAHVPN 1206
Query: 727 EVTVDHFGSIVGNITACSNLWFSEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSL 786
EVTV I G I + + FS+DELP GS
Sbjct: 1207 EVTVSQLEKIAGRIFEVNRITFSDDELPV--------------------------EGSGA 1240
Query: 787 NVMPKSTLDQLSYRGTPLRRSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDIN 846
N+ P STL +L+ +R + V+AFDGT+ +GEI+L + IG F + FQV++IN
Sbjct: 1241 NICPLSTLQKLNVNVERVRPNNVCVRAFDGTKTDAIGEIELILKIGHVDFTVNFQVLNIN 1300
Query: 847 ASYSCLLGRPWIHDAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEAGSA- 905
ASY+ LLGRPW+H AGAV STLHQ +KF + V +H E V + SS I+A +
Sbjct: 1301 ASYNLLLGRPWVHRAGAVPSTLHQMVKFEYDRQEVIVHSEGDLSVYKDSSLPFIKANNEN 1360
Query: 906 EGTAFQGLTV-------EGTEPKRDGTAMASLKDAQRAVQEGQAAGWGRLIQL------- 951
E +Q V EG + MAS+ ++ G G G I L
Sbjct: 1361 EALVYQAFEVVVVEHILEGNLISKPQLPMASVMMVNEMLKHGFEPGKGLGIFLQGRAYPV 1420
Query: 952 --RENKHKEGLGFSP 964
R++ GLG+ P
Sbjct: 1421 SPRKSLGTFGLGYKP 1435
Score = 112 bits (280), Expect = 6e-23
Identities = 100/368 (27%), Positives = 159/368 (43%), Gaps = 60/368 (16%)
Query: 2 PTGFPYGLPPFFTPSTAAGTSGTANNGPIPATNVVSINTTLPQTTAAVTEPLVHAIPQSV 61
P P P F P+ A T+ T+N +P +N L E L IP S
Sbjct: 598 PLNTPMMSNPLFVPT--APTNSTSNPTVVPKSNNDPSFQVLHDHGYTPEEAL--KIPSSY 653
Query: 62 NINTHHGNIP--VIKTME-ERMEELAKELR---HEIKANQG--NADSFKTQDLCLVPKVD 113
TH + P + KT++ E EE+AK+++ I+ QG DLC+ P V
Sbjct: 654 P-QTHQYSSPFKIEKTVKNEEHEEMAKKMKSLEQSIRDMQGLGGHKGISFSDLCMFPHVH 712
Query: 114 VPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDATEWYTSLS 173
+P + + L++ F +SL+ A+EW+
Sbjct: 713 LPT----------------------------GAEGKEELLMAYFGESLVGIASEWFIDQD 744
Query: 174 KNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPAL 233
+ HT+D LA F + +N + P+R L ++ +K E+FREYA RWR AAR+ ++
Sbjct: 745 IANWHTWDNLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRWREQAARVKLSM 804
Query: 234 DEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNAS 293
E EM FL+ + DY ++ A F E++ +G +E ++ G IV + A + +
Sbjct: 805 KESEMIDVFLQAQEPDYFHYLLSAVGKTFVEVIKVGEMVENGIKSGKIVSQAALKATTQA 864
Query: 294 KRYGNGH--HKKKETEVGMVSAGA-------GQSMAT----------VAPINAAQMPPSY 334
+ G+G+ KK+ +V V GA G+S A+ ++PI P
Sbjct: 865 LQNGSGNIGGKKRREDVATVGNGAKDEFTPIGESYASLFQKLRTLNVLSPIERKMSNPPP 924
Query: 335 PYAPYSQH 342
YSQH
Sbjct: 925 RNLDYSQH 932
>gb|AAT39964.1| putative gag polyprotein [Solanum demissum]
Length = 421
Score = 152 bits (383), Expect = 7e-35
Identities = 108/365 (29%), Positives = 175/365 (47%), Gaps = 34/365 (9%)
Query: 2 PTGFPYGLPPFFTPSTAAGTSGTANNGPIPATNVVSINTTLPQTTAAVTEPLVHAIPQSV 61
P P P F P+ A T+ T+N +P +N L E L IP S
Sbjct: 78 PLNTPMMSNPLFVPT--APTNSTSNPTVVPKSNNDPSFQVLHDHGYTPEEAL--KIPSSY 133
Query: 62 NINTHHGNIP--VIKTME----ERMEELAKELRHEIKANQG--NADSFKTQDLCLVPKVD 113
TH + P + KT++ E M + K L H I+ QG DLC+ P V
Sbjct: 134 P-QTHQYSSPFKIEKTVKNEEHEEMTKKMKSLEHSIRDMQGLGGHKGISFSDLCMFPHVH 192
Query: 114 VPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDATEWYTSLS 173
+P FK P+F++Y+G P H+ +Y ++ + + L++ F +SL+ A++W+
Sbjct: 193 LPTGFKTPNFEKYDGHGDPIAHLKRYYNQLRGAEGKEELLMAYFGESLVGIASKWFIDQD 252
Query: 174 KNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPAL 233
+ HT+D+LA F + +N + P+R L ++ +K E+FREYA RWR AAR+ P +
Sbjct: 253 IANWHTWDDLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRWREQAARVKPPM 312
Query: 234 DEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNAS 293
E EM FL+ + DY ++ A F+E++ +G +E ++ G IV + A + +
Sbjct: 313 KELEMIDVFLQAQEPDYFHYLLSAVGKTFTEVIKVGEMVENGIKSGKIVSQAALKATTQA 372
Query: 294 KRYGNGH---HKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYAPYSQHPFFPPFYH 350
G+G+ K++E +VSA P +Y ++QH +FPP
Sbjct: 373 LPNGSGNIGGKKRREDVATVVSA-----------------PRTYAQDNHTQH-YFPPQIP 414
Query: 351 QYPLP 355
QY +P
Sbjct: 415 QYLVP 419
>emb|CAD41628.3| OSJNBa0091D06.8 [Oryza sativa (japonica cultivar-group)]
gi|50926818|ref|XP_473330.1| OSJNBa0091D06.8 [Oryza
sativa (japonica cultivar-group)]
Length = 2657
Score = 112 bits (280), Expect = 6e-23
Identities = 79/264 (29%), Positives = 127/264 (47%), Gaps = 11/264 (4%)
Query: 643 TVPPIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKISIL 702
T+P K P+ V ++ S PG + E + I DY ++ L + P+ +S+
Sbjct: 1348 TLPDPHKAKPSKVDKPIKEASPPGEAPETKARSKEKPDI---DYNVLAHLKRIPALLSVY 1404
Query: 703 SLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWFSEDELPEAGKHHNL 762
L+ R+ L+K L+ V H + N + + F++++ G HN
Sbjct: 1405 DALILVPDLREALIKALQTPEVYEVDMAKH--RLFNNPLFVNEITFADEDNIIEGSDHNR 1462
Query: 763 ALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKAFDGTRKSVL 822
L+I N L +L+D GS++N++P +L + + L + ++ FD KS L
Sbjct: 1463 PLYIEGNIGPAHLRRILIDPGSAVNILPVRSLTRAGFTTKDLEPTDMVICGFDNQGKSTL 1522
Query: 823 GEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFAKSGKLVT 882
G I + I + +F + F V++ N SYS LLGRPWIH V STLHQ LKF GK
Sbjct: 1523 GAITVKIQMSTFSFKVHFFVIEANTSYSALLGRPWIHKYRVVPSTLHQCLKFL-DGK--- 1578
Query: 883 IHGEEAYLVSQLSSFSCIEAGSAE 906
G + +V SS++ E+ A+
Sbjct: 1579 --GAQQRIVGNSSSYTIQESYHAD 1600
Score = 47.8 bits (112), Expect = 0.002
Identities = 72/415 (17%), Positives = 154/415 (36%), Gaps = 89/415 (21%)
Query: 112 VDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDATEWYTS 171
V P ++ P F +++ + H+ + G+ +N SL++ F SL A WY+
Sbjct: 842 VAFPARWHPPKFRQFDRTGDAREHLAYFEAACGDTANNSSLLLRQFSGSLTGPAFHWYSR 901
Query: 172 LSKNDIHTFDELAAAFKSHYGFNTRLKPNREF----LRSLSQKKEESFREYAQRWRGAAA 227
L I ++ + K H+ + ++F L + Q+++E+ +Y R+R +
Sbjct: 902 LPTGSIRSWASMKEVLKKHF-----VAMKKDFSIVELSQVRQRRDEAIDDYVIRFRNSFV 956
Query: 228 RITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAE 287
R+ + E+ + L + T+LE I+ K
Sbjct: 957 RLAREMHLEDAIEIALSS--------------------AVAATKLEFENSPQIMELYKNA 996
Query: 288 SSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYAPYSQHPFFPP 347
S+ + +K + +G G A N A++ + P
Sbjct: 997 SAFDPAKHFS-----------ATKPSGGGSKPKAPAEANVARVFSTAP------------ 1033
Query: 348 FYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQHQQARPTFPPI----PMLYAELLPTL 403
Q QVP+ L + +Q + RP+ + + EL+ +
Sbjct: 1034 ----------QGQVPM----------LGAKNEQARGRQRPSIQDLLKKQYIFRRELVKDM 1073
Query: 404 LHRGHCTTRQGKPPPDPLPP----RFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQG 459
++ + P+P P + L C +H+ +G+ +E C A K +++ +++
Sbjct: 1074 FNQ--LKEHRALNLPEPWRPDQVTMVDNPLYCPYHR-YVGYAIEDCVAFKEWLQRAVNEK 1130
Query: 460 KLTFENNVPHVLDNPLPNHATVNMIEVCEEALRLDVRNVATPLVPLHIKLCKASL 514
++ + D P++ VNM+ V + + ++ PL + ++ + L
Sbjct: 1131 RINLD------ADAINPDYRAVNMVSVEPGSREQEGADIWVPLNQVEHQIARMML 1179
>ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 111 bits (278), Expect = 1e-22
Identities = 81/287 (28%), Positives = 130/287 (45%), Gaps = 21/287 (7%)
Query: 621 EGTSAALRSGRVRPPIDKTATPTVP-PIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILR 679
E + +LR G+ P K+ P V P K +P PG + E +
Sbjct: 1252 EEVNISLRGGKTLPDPHKSKVPNVDKPAKKASP------------PGEAPEAPETKTGSK 1299
Query: 680 LIKRSDYKIVDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGN 739
DYK++ L + P+ +S+ L+ R+ L+K L+ V H + N
Sbjct: 1300 EKPAVDYKVLAHLKRIPALLSVYDALMMVPDLREALIKALQAPEVYEVDMAKH--RLYDN 1357
Query: 740 ITACSNLWFSEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSY 799
+ + F++++ G HN L+I N S L +L+D GS++N++P +L + +
Sbjct: 1358 PLFVNEITFADEDNIIKGGDHNRPLYIEGNIGSAHLRRILIDLGSAVNILPVRSLTRAGF 1417
Query: 800 RGTPLRRSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIH 859
L ++ FD K LG I + I + +F + F V++ N SYS LLGRPWIH
Sbjct: 1418 TTKDLEPIDVVICGFDNQGKPTLGAITIKIQMSTFSFKVRFFVIEANTSYSALLGRPWIH 1477
Query: 860 DAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEAGSAE 906
V STLHQ LKF +G + + S S ++ E+ A+
Sbjct: 1478 KYRVVPSTLHQCLKFLDG------NGVQQRITSNFSPYTIQESYHAD 1518
>gb|AAU89777.1| gag-pol polyprotein-like [Solanum tuberosum]
Length = 1716
Score = 105 bits (262), Expect = 8e-21
Identities = 78/277 (28%), Positives = 128/277 (46%), Gaps = 22/277 (7%)
Query: 532 CFTVQDDIQSLMNDNFLTVSDVCVIVPVFHDPPVKSMPLKENAEPLVIRLPGLVPYTSDR 591
C ++ IQ L+N N +++ V P V S PL + + + T +
Sbjct: 478 CINLKHKIQDLINQNVVSLQTVA--------PNVNSNPLPNHGGITINMIE-----TDED 524
Query: 592 AIPYKYNATIIENGVEVPLVSLAVMNN------TAEGTSAAL-RSGRVRPP--IDKTATP 642
K I + +E + SL++ T E A + R VRP I+ TAT
Sbjct: 525 WCVMKAIVLIAPDKLERAVASLSIREKKEFVILTPEKVVALVPRETLVRPKFVIETTATQ 584
Query: 643 TVPPIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKISIL 702
+ + + + SI + +E R ++ DY IV L +TP++IS+
Sbjct: 585 GMTRSGRCYTPEELAQGGQKKEKKSSINKAKAEEFWRRMQPKDYSIVKYLEKTPAQISVW 644
Query: 703 SLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWFSEDELPEAGKHHNL 762
+LL+SS HR L+K L+ YV D+ +++ + + F ++ELP G+ HN
Sbjct: 645 ALLMSSQLHRQALMKALDDTYVPVGTNSDNLAAMINQVIRGHRISFCDEELPFEGRMHNK 704
Query: 763 ALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSY 799
ALH++ C+ +++ VLVD GS LN+ P STL L +
Sbjct: 705 ALHVTTMCRDKIINRVLVDDGSGLNICPLSTLRHLKF 741
Score = 99.8 bits (247), Expect = 4e-19
Identities = 82/295 (27%), Positives = 128/295 (42%), Gaps = 73/295 (24%)
Query: 199 PNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAA 258
P+R L + QK ES+RE+A RWR AAR+ P + E+E+ + F++ K
Sbjct: 299 PDRYSLEKMKQKSTESYREFAYRWRKEAARVRPPMSEKEIVEVFVRVAK----------- 347
Query: 259 PNNFSEMVTMGTRLEEAVREGIIVFEKA--ESSVNASKRYGNGHHKKKETEVGMVSAGAG 316
F+E+V +G +E+ +R G IV+ A ESS+ KKK +V +S G
Sbjct: 348 ---FAEIVKIGETIEDGLRTGKIVYVAASPESSILL---------KKKRDDVSSISY-EG 394
Query: 317 QSMATVAPINAAQMPPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPV 376
+ A + + PS+ + + + P
Sbjct: 395 KKTAKKSSSCQGRSRPSH--SSFEKKP--------------------------------- 419
Query: 377 QQQQQHQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQG 436
AR F P+ +L L G+ G P D +R D +C +H
Sbjct: 420 --------AR-NFTPLIKSRTKLFERLTVAGYIHP-VGPKPVDTSSKFYRPDQRCAYHSN 469
Query: 437 ALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHA--TVNMIEVCEE 489
++GHD E C LK+ ++ LI+Q ++ + P+V NPLPNH T+NMIE E+
Sbjct: 470 SVGHDTEDCINLKHKIQDLINQNVVSLQTVAPNVNSNPLPNHGGITINMIETDED 524
>emb|CAC44143.1| putative gag polyprotein [Cicer arietinum]
Length = 88
Score = 99.4 bits (246), Expect = 6e-19
Identities = 42/88 (47%), Positives = 60/88 (67%)
Query: 106 LCLVPKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDA 165
+CLVP V +P+KFK+ +F++Y G TCP+NH+ Y RKM ++ ND L+IH FQDSL +
Sbjct: 1 MCLVPDVTIPRKFKVLEFEKYKGATCPKNHLTMYGRKMASHAHNDKLLIHFFQDSLSGAS 60
Query: 166 TEWYTSLSKNDIHTFDELAAAFKSHYGF 193
WY L +N IH++ +LA AF Y +
Sbjct: 61 LSWYMHLERNRIHSWKDLADAFLRQYKY 88
>gb|AAT39963.1| putative polyprotein [Solanum demissum]
Length = 1483
Score = 88.2 bits (217), Expect = 1e-15
Identities = 60/163 (36%), Positives = 83/163 (50%), Gaps = 17/163 (10%)
Query: 819 KSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFAKSG 878
+ +GEI+L + IGP F + FQV++INASY+ LLGRPW+H AGAV STLHQ +KF
Sbjct: 213 EDAIGEIELILKIGPVDFTVNFQVLNINASYNLLLGRPWVHRAGAVPSTLHQMVKFEYDR 272
Query: 879 KLVTIHGEEAYLVSQLSSFSCIEAGSA-EGTAFQGLTVEGTEPKRDGT-------AMASL 930
+ V +H E V + SS I+A + E +Q V E +G MAS+
Sbjct: 273 QEVIVHCERDLSVYKDSSLPFIKANNENEALVYQAFEVVVVEHNLEGNLISKPQLPMASV 332
Query: 931 KDAQRAVQEGQAAGWGRLIQL---------RENKHKEGLGFSP 964
++ G G G I L R++ GLG+ P
Sbjct: 333 MMVNEMLKHGFKLGKGLGIFLQGRAYPVSPRKSLGTFGLGYKP 375
Score = 86.3 bits (212), Expect = 5e-15
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 26/171 (15%)
Query: 585 VPYTSDRAIPYKYNATIIE-NGVEVPLVSLAVMNNTAEGTSAALRSGRVRPPIDKTATPT 643
+P T+ +A+P+KY T++ G E+ N + RS R
Sbjct: 66 LPMTNPKAVPWKYEPTVVTYKGKEI--------NEKVDEIEGMTRSRRCY---------- 107
Query: 644 VPPIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKISILS 703
P ++ N D Q + + +E LR +K SDY IV+QL +TP++IS+LS
Sbjct: 108 -------APAELRKNNNDQMQVKSPVTEREAEEFLRKMKLSDYSIVEQLRKTPAQISLLS 160
Query: 704 LLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWFSEDELP 754
LL+ S HR ++K+L +A+V +E T+ I G I + + FS+DELP
Sbjct: 161 LLIHSDEHRKVVMKILNEAHVPNEGTMSQLEKIAGRIFEVNCITFSDDELP 211
>gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530550|ref|NP_919577.1| putative
retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18581535|gb|AAK52540.2| Putative
retroelement pol polyprotein [Oryza sativa]
Length = 1580
Score = 82.4 bits (202), Expect = 7e-14
Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 7/203 (3%)
Query: 752 ELPEAGKHHNLA-LHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 810
E PE ++ +L L+I+ +S ++VD G+++N+MP +T +L L ++ +
Sbjct: 351 EKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMV 410
Query: 811 VKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 870
+K F G +G +++ +T+G +T TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 411 LKDFGGNPSETMGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTIHQ 470
Query: 871 KLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEAGSAEGTAFQGLTVEGTEPKRDGTAMASL 930
L G + I ++ L + S+ C E + TV+ + K+ G + S
Sbjct: 471 CL-IQWQGDKIEIVPADSQLKMENPSY-CFEGVMEGSNVYTKDTVDDLDDKQ-GQGLMSA 527
Query: 931 KDAQRAVQEGQAAGWGR--LIQL 951
D + + A G GR LI+L
Sbjct: 528 DDLEE-IDISPAIGQGRHLLIEL 549
>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411560|pir||E84516 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 764
Score = 80.9 bits (198), Expect = 2e-13
Identities = 47/142 (33%), Positives = 72/142 (50%)
Query: 746 LWFSEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLR 805
L F+ ++L HN L I ++ ++ +L+DTGSS+NV+ K L ++ ++
Sbjct: 330 LTFTSEDLFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIK 389
Query: 806 RSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVT 865
S + FDG G I LPI +G F V+D Y+ +LG PWIHD A+
Sbjct: 390 PSVRPLTGFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIP 449
Query: 866 STLHQKLKFAKSGKLVTIHGEE 887
S+ HQ +K S + TI G +
Sbjct: 450 SSYHQCIKIPTSIGIETIRGNQ 471
>gb|AAT85304.1| reverse transcriptase (RNA-dependent DNA polymerase) domain
containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 1372
Score = 80.9 bits (198), Expect = 2e-13
Identities = 47/147 (31%), Positives = 79/147 (52%), Gaps = 1/147 (0%)
Query: 752 ELPEAGKHHNLA-LHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 810
E PE ++ +L L+I+ +S ++VD G+++N+MP +T +L L ++ +
Sbjct: 424 EKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNVEDLIKTNMV 483
Query: 811 VKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 870
+K F G G +++ +T+G +T TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 484 LKDFGGNPSETKGVLNVELTVGNKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 543
Query: 871 KLKFAKSGKLVTIHGEEAYLVSQLSSF 897
L + K+ + + A L+ L F
Sbjct: 544 CLIQWQGDKIQIVPADRAKLIELLKEF 570
>gb|AAT77888.1| putative retrotransposon gag protein [Oryza sativa (japonica
cultivar-group)]
Length = 1251
Score = 80.1 bits (196), Expect = 3e-13
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 749 SEDELPEA-GKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRS 807
+E E PE G H L+I+ +S ++VD G+++N+MP +T +L L ++
Sbjct: 685 AEFEKPEGTGNRHLKPLYINGYVNGKSMSKMMVDGGAAVNLMPYATFKKLGRNAEDLIKT 744
Query: 808 TFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTST 867
++K F G G +++ +T+G +T TF V+D SYS LLGR WIH + ST
Sbjct: 745 NMVLKDFGGNPSETRGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPST 804
Query: 868 LHQKL 872
+HQ L
Sbjct: 805 MHQCL 809
Score = 57.0 bits (136), Expect = 3e-06
Identities = 32/115 (27%), Positives = 61/115 (52%), Gaps = 3/115 (2%)
Query: 111 KVDVPKKFKIPDFDRYNGL--TCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDATEW 168
+V +P +FK+PDF +++G HI +++ + G D+L F+ SL A W
Sbjct: 235 RVPLPNRFKVPDFSKFSGQEGVSTYEHINRFLAQCGEASAVDALRFRLFRLSLSGSAFTW 294
Query: 169 YTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 223
++SL I+++ +L F S++ ++ + L ++ Q+ +E EY QR+R
Sbjct: 295 FSSLPCGSINSWADLEKQFHSYF-YSWVHEMKLSDLTAIKQRHDEPVHEYIQRFR 348
>ref|XP_474632.1| OSJNBa0039G19.2 [Oryza sativa (japonica cultivar-group)]
gi|38347142|emb|CAD39495.2| OSJNBa0039G19.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1136
Score = 79.3 bits (194), Expect = 6e-13
Identities = 46/142 (32%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
Query: 752 ELPEAGKHHNLA-LHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 810
E PE K+ +L L+I+ +S ++VD G+++N+MP +T +L L +++ +
Sbjct: 364 EKPEGTKNRHLKPLYINGYVNEKPMSKMMVDGGAAVNLMPYATFRKLGRNTEDLIKTSMV 423
Query: 811 VKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 870
+K F G G ++L +T+G +T TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 424 LKDFGGNPSETKGVLNLELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 483
Query: 871 KLKFAKSGKLVTIHGEEAYLVS 892
L + K+ + +++ V+
Sbjct: 484 CLIQWQGNKIEIVLADKSVNVA 505
>emb|CAB80803.1| AT4g03800 [Arabidopsis thaliana] gi|3695395|gb|AAC62796.1| contains
similarity to reverse transcriptase (Pfam: PF00078 rvt,
E=4.3e-08) [Arabidopsis thaliana] gi|7487690|pir||T01961
hypothetical protein T5H22.5 - Arabidopsis thaliana
Length = 637
Score = 77.8 bits (190), Expect = 2e-12
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 14/144 (9%)
Query: 743 CSNLWFSEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGT 802
CS++ F E+E + H+ AL I+++ + +S +LVDTGSS++++ + G
Sbjct: 182 CSSVSFDEEETRHIERPHDDALIITLDVANFKISRILVDTGSSVDLI---------FLGP 232
Query: 803 PLRRSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAG 862
P + AF LG I LP+ G + ++ F V D A+Y+ +LG PWI
Sbjct: 233 PSP-----LVAFTSESAMSLGTIKLPVLAGKMSKIVDFVVFDKPATYNIILGTPWIFQMK 287
Query: 863 AVTSTLHQKLKFAKSGKLVTIHGE 886
AV ST HQ LKF S + TI G+
Sbjct: 288 AVPSTYHQWLKFPTSNGVETIWGD 311
>pir||E96549 hypothetical protein F11M15.5 [imported] - Arabidopsis thaliana
gi|4836930|gb|AAD30632.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 1295
Score = 77.8 bits (190), Expect = 2e-12
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 743 CSNLWFSEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGT 802
C + FSE+E + K H+ AL IS++ + + VL+DTGSS++++ TL ++
Sbjct: 445 CPEISFSEEETSDLDKPHDDALVISLDVGNCEVQRVLIDTGSSVDLIFLDTLVRMGISKK 504
Query: 803 PLRRSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAG 862
++ + + +F +L I LP+T +I F V D A+Y+ +LG PW+++
Sbjct: 505 DIKGALSPLVSFTSETSMLLRTITLPVTAQGIVKMIEFTVFDRPAAYNIILGTPWLYEMK 564
Query: 863 AVTSTLHQKLKFAKSGKLVTIHGEE--AYLVSQLSSFS 898
AV ST HQ +KF + I G + + +V +++ S
Sbjct: 565 AVPSTYHQCVKFPTPTGVKQILGSQRTSRIVGEMTGIS 602
Score = 38.9 bits (89), Expect = 0.89
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 116 KKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYK----DNDSLMIHCFQDSLMEDATEWYTS 171
+ FK+P YNG P+ ++ + G + D+ + F +SL A W+T
Sbjct: 157 RDFKLPG---YNGKGDPKEYLTFFQVIAGRVPLEPHEEDAGLCKLFSESLSGPALTWFTQ 213
Query: 172 LSKNDIHTFDELAAAFKSHYGF 193
L + I F +L+ AF YG+
Sbjct: 214 LEEGSIDNFKQLSTAFIKQYGY 235
>gb|AAP53041.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532904|ref|NP_920754.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1025
Score = 77.4 bits (189), Expect = 2e-12
Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 752 ELPEAGKHHNLA-LHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 810
E PE ++ +L L+I+ LS ++VD G+++N+MP +T +L L ++ +
Sbjct: 108 EKPEGTENRHLKPLYINGYVNGKPLSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMV 167
Query: 811 VKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 870
+K F G G +++ +T+G +T TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 168 LKDFGGNPSETKGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 227
Query: 871 KL 872
L
Sbjct: 228 CL 229
>gb|AAP52791.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532404|ref|NP_920504.1| putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|19881646|gb|AAM01047.1| putative pol polyprotein
[Oryza sativa]
Length = 505
Score = 77.0 bits (188), Expect = 3e-12
Identities = 39/121 (32%), Positives = 65/121 (53%)
Query: 752 ELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLV 811
E P+ H L++ + +S +LVD G+++N+MP S +L L+++ ++
Sbjct: 310 EKPDESNRHMKPLYLKGHIDGKPVSRMLVDRGAAVNLMPYSLFKRLGRGDDELKKTNMIL 369
Query: 812 KAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQK 871
F+G G + +T+G +T TF ++D+ SY+ +LGR WIH V STLHQ
Sbjct: 370 NGFNGEPTEAKGIFSVELTMGNKTLPTTFFIVDVQGSYNVILGRCWIHANCCVPSTLHQC 429
Query: 872 L 872
L
Sbjct: 430 L 430
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,808,062,666
Number of Sequences: 2540612
Number of extensions: 81614199
Number of successful extensions: 341709
Number of sequences better than 10.0: 1538
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 1344
Number of HSP's that attempted gapping in prelim test: 330881
Number of HSP's gapped (non-prelim): 6387
length of query: 1018
length of database: 863,360,394
effective HSP length: 138
effective length of query: 880
effective length of database: 512,755,938
effective search space: 451225225440
effective search space used: 451225225440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)
Medicago: description of AC146794.6