BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146794.13 + phase: 0 /pseudo
(818 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07... 119 5e-25
gb|AAV31171.1| putative polyprotein [Solanum tuberosum] 117 2e-24
gb|AAD22153.1| polyprotein [Sorghum bicolor] 117 2e-24
gb|AAT38744.1| putative gag-pol polyprotein [Solanum demissum] 116 3e-24
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 116 3e-24
emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar... 115 4e-24
gb|AAX96504.1| retrotransposon protein, putative, Ty3-gypsy sub-... 115 4e-24
gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica ... 115 6e-24
emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar... 115 6e-24
gb|AAP52803.1| putative retroelement [Oryza sativa (japonica cul... 114 1e-23
gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-... 114 1e-23
gb|AAX92958.1| retrotransposon protein, putative, Ty3-gypsy sub-... 114 1e-23
ref|XP_463259.1| putative polyprotein [Oryza sativa] gi|16924104... 114 1e-23
emb|CAD41692.1| OSJNBb0015D13.7 [Oryza sativa (japonica cultivar... 114 1e-23
gb|AAT39297.1| putative gag-pol protein [Solanum demissum] 114 1e-23
gb|AAP73852.1| putative gag-pol polyprotein [Oryza sativa (japon... 114 2e-23
ref|XP_470061.1| putative polyprotein [Oryza sativa (japonica cu... 114 2e-23
gb|AAP51922.1| putative polyprotein [Oryza sativa (japonica cult... 113 2e-23
emb|CAD39356.2| OSJNBa0059H15.7 [Oryza sativa (japonica cultivar... 113 2e-23
ref|XP_472504.1| OSJNBb0049I21.5 [Oryza sativa (japonica cultiva... 113 3e-23
>emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07863 probable
polyprotein - pineapple retrotransposon dea1 (fragment)
Length = 871
Score = 119 bits (297), Expect = 5e-25
Identities = 55/84 (65%), Positives = 69/84 (81%)
Query: 18 AFRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEF 77
AF MN++F YLD FVVVFIDDIL+YSRS+ +H EHL+I+LQVL+EK++Y KL KCEF
Sbjct: 149 AFMDLMNRVFKPYLDRFVVVFIDDILVYSRSDADHEEHLRIVLQVLREKELYVKLKKCEF 208
Query: 78 WLSEVSFLGHIISDSGIVVTHQKL 101
WL EV+FLGH+IS SGI V +K+
Sbjct: 209 WLREVAFLGHLISGSGIAVDPKKI 232
>gb|AAV31171.1| putative polyprotein [Solanum tuberosum]
Length = 1487
Score = 117 bits (292), Expect = 2e-24
Identities = 53/84 (63%), Positives = 68/84 (80%)
Query: 18 AFRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEF 77
AF MN++F YLD FV+VFIDDILIYSR++E+HA HL+I+LQ LK+K++YAK SKCEF
Sbjct: 713 AFMDLMNRVFKPYLDMFVIVFIDDILIYSRNKEDHASHLRIVLQTLKDKELYAKFSKCEF 772
Query: 78 WLSEVSFLGHIISDSGIVVTHQKL 101
WL V+FLGHI+S GI V +K+
Sbjct: 773 WLKSVAFLGHIVSGDGIKVDTRKI 796
>gb|AAD22153.1| polyprotein [Sorghum bicolor]
Length = 1484
Score = 117 bits (292), Expect = 2e-24
Identities = 55/101 (54%), Positives = 74/101 (72%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNK+F YLD FVVVFIDDIL++S+++EEHAEHL+++LQ L+E K+YAK SKCEFW
Sbjct: 693 FMYMMNKVFMEYLDKFVVVFIDDILVFSKTKEEHAEHLRLVLQKLREHKLYAKRSKCEFW 752
Query: 79 LSEVSFLGHIISDSGIVVTHQKLMQ*HNGRLRSQLQRLEVF 119
L EVSFLGH++S+ GI V K+ N + + + + F
Sbjct: 753 LEEVSFLGHVVSNGGIAVDPSKVKDVLNWKPPTDVSEIRSF 793
>gb|AAT38744.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1515
Score = 116 bits (291), Expect = 3e-24
Identities = 52/84 (61%), Positives = 67/84 (78%)
Query: 18 AFRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEF 77
AF MN++F YLD FV++FIDDILIYSR+EE+HA HL+ +LQ LK+K++YAK SKCEF
Sbjct: 790 AFMDLMNRVFRPYLDMFVIIFIDDILIYSRNEEDHASHLRTVLQTLKDKELYAKFSKCEF 849
Query: 78 WLSEVSFLGHIISDSGIVVTHQKL 101
WL V+FLGHI+S GI V +K+
Sbjct: 850 WLKSVAFLGHIVSGDGIKVDTRKI 873
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 116 bits (291), Expect = 3e-24
Identities = 52/84 (61%), Positives = 67/84 (78%)
Query: 18 AFRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEF 77
AF MN++F YLD FV++FIDDILIYSR+EE+HA HL+ +LQ LK+K++YAK SKCEF
Sbjct: 796 AFMDLMNRVFRPYLDMFVIIFIDDILIYSRNEEDHASHLRTVLQTLKDKELYAKFSKCEF 855
Query: 78 WLSEVSFLGHIISDSGIVVTHQKL 101
WL V+FLGHI+S GI V +K+
Sbjct: 856 WLKSVAFLGHIVSGDGIKVDTRKI 879
>emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar-group)]
gi|50930427|ref|XP_474741.1| OSJNBa0059D20.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 115 bits (289), Expect = 4e-24
Identities = 54/83 (65%), Positives = 66/83 (79%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNK+F YLD FVVVFIDDILIYS+ EEEHAEHL+++LQ L++ K+YAK SKCEFW
Sbjct: 675 FMNLMNKVFMEYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFW 734
Query: 79 LSEVSFLGHIISDSGIVVTHQKL 101
L EV+FLGH+IS G+ V K+
Sbjct: 735 LKEVAFLGHVISAGGVAVDPAKV 757
>gb|AAX96504.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1506
Score = 115 bits (289), Expect = 4e-24
Identities = 57/108 (52%), Positives = 74/108 (67%)
Query: 12 LRIFSDAFRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAK 71
L I +F MNKIF YLD FVVVFIDDILIYS+SEEEHA+HL+++L L+E ++YAK
Sbjct: 707 LTIAPASFMNMMNKIFMEYLDKFVVVFIDDILIYSKSEEEHAQHLRMVLDKLREHQLYAK 766
Query: 72 LSKCEFWLSEVSFLGHIISDSGIVVTHQKLMQ*HNGRLRSQLQRLEVF 119
SKCEFWL EV FLGH++S+ GI V + + N + + + F
Sbjct: 767 FSKCEFWLKEVEFLGHVLSEGGIAVNPRNVQNVLNWKQPQNVPEIRSF 814
>gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
gi|37534498|ref|NP_921551.1| putative gag-pol protein
[Oryza sativa (japonica cultivar-group)]
Length = 1470
Score = 115 bits (288), Expect = 6e-24
Identities = 54/83 (65%), Positives = 66/83 (79%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNK+F YLD FVVVFIDDILIYS+ EEEHAEHL+++LQ L++ K+YAK SKCEFW
Sbjct: 675 FMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFW 734
Query: 79 LSEVSFLGHIISDSGIVVTHQKL 101
L EV+FLGH+IS G+ V K+
Sbjct: 735 LKEVAFLGHVISAGGVAVDPAKV 757
>emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar-group)]
gi|50926528|ref|XP_473211.1| OSJNBa0019D11.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 115 bits (288), Expect = 6e-24
Identities = 54/83 (65%), Positives = 66/83 (79%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNK+F YLD FVVVFIDDILIYS+ EEEHAEHL+++LQ L++ K+YAK SKCEFW
Sbjct: 675 FMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFW 734
Query: 79 LSEVSFLGHIISDSGIVVTHQKL 101
L EV+FLGH+IS G+ V K+
Sbjct: 735 LKEVAFLGHVISAGGVAVDPAKV 757
>gb|AAP52803.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532428|ref|NP_920516.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21672044|gb|AAM74406.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881659|gb|AAM01060.1| Putative retroelement [Oryza
sativa]
Length = 986
Score = 114 bits (286), Expect = 1e-23
Identities = 54/83 (65%), Positives = 67/83 (80%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNK+F YLD FVVVFIDDILIYS+ EEEHA+HL+++L+ L++ K+YAK SKCEFW
Sbjct: 191 FMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAKHLRLVLEKLRKHKLYAKFSKCEFW 250
Query: 79 LSEVSFLGHIISDSGIVVTHQKL 101
L EV+FLGHIIS G+VV K+
Sbjct: 251 LKEVAFLGHIISAGGVVVDPAKV 273
>gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1436
Score = 114 bits (285), Expect = 1e-23
Identities = 53/83 (63%), Positives = 66/83 (78%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNK+F YLD FVVVFIDDILIYS+ EEEH EHL+++L+ L++ K+YAK SKCEFW
Sbjct: 675 FMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHVEHLRLVLEKLRKHKLYAKFSKCEFW 734
Query: 79 LSEVSFLGHIISDSGIVVTHQKL 101
L EV+FLGH+IS G+VV K+
Sbjct: 735 LKEVAFLGHVISAGGVVVDPAKV 757
>gb|AAX92958.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 669
Score = 114 bits (285), Expect = 1e-23
Identities = 53/83 (63%), Positives = 66/83 (78%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNK+F YLD FVVVFIDDILIYS+ EEEHAEHL+++L+ L++ K+YAK SKCEFW
Sbjct: 195 FMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLEKLRKHKLYAKFSKCEFW 254
Query: 79 LSEVSFLGHIISDSGIVVTHQKL 101
L EV+FLGH+IS G+ V K+
Sbjct: 255 LEEVAFLGHVISAGGVAVDPAKV 277
>ref|XP_463259.1| putative polyprotein [Oryza sativa] gi|16924104|gb|AAL31683.1|
putative polyprotein [Oryza sativa]
Length = 962
Score = 114 bits (285), Expect = 1e-23
Identities = 52/83 (62%), Positives = 68/83 (81%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNKIF YLD FVVVFIDDILIYS++EEEH +HL+++L+ L++ ++YAKLSKCEFW
Sbjct: 457 FMNLMNKIFMEYLDQFVVVFIDDILIYSKNEEEHKQHLRLVLEKLRQHQLYAKLSKCEFW 516
Query: 79 LSEVSFLGHIISDSGIVVTHQKL 101
L +V+FLGHII+ G+ V QK+
Sbjct: 517 LDQVAFLGHIITKEGVAVDPQKI 539
>emb|CAD41692.1| OSJNBb0015D13.7 [Oryza sativa (japonica cultivar-group)]
Length = 1516
Score = 114 bits (285), Expect = 1e-23
Identities = 52/78 (66%), Positives = 65/78 (82%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNK+F +LD FVVVFIDDILIYS+SEEEH +HL+++L++LKE ++YAK SKC+FW
Sbjct: 712 FMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEILKEHQLYAKFSKCDFW 771
Query: 79 LSEVSFLGHIISDSGIVV 96
LSEV FLGHIIS G+ V
Sbjct: 772 LSEVKFLGHIISAQGVAV 789
>gb|AAT39297.1| putative gag-pol protein [Solanum demissum]
Length = 1438
Score = 114 bits (285), Expect = 1e-23
Identities = 52/84 (61%), Positives = 65/84 (76%)
Query: 18 AFRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEF 77
AF MN++F YLD FV+VFIDDIL+YSR+EE+HA HL+ +LQ LK+ K+YAK SKCEF
Sbjct: 739 AFMDLMNRVFKPYLDTFVIVFIDDILVYSRNEEDHASHLRTVLQTLKDNKLYAKFSKCEF 798
Query: 78 WLSEVSFLGHIISDSGIVVTHQKL 101
WL V+FLGHI+S GI V K+
Sbjct: 799 WLKSVAFLGHIVSGDGIKVDTGKI 822
>gb|AAP73852.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 823
Score = 114 bits (284), Expect = 2e-23
Identities = 53/83 (63%), Positives = 66/83 (78%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNK+F YLD FVVVFIDDILIYS+ EEEHAEHL+++L+ L++ K+YAK SKCEFW
Sbjct: 126 FMNLMNKVFVDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLEKLRKHKLYAKFSKCEFW 185
Query: 79 LSEVSFLGHIISDSGIVVTHQKL 101
L EV+FLGH+IS G+ V K+
Sbjct: 186 LKEVAFLGHVISAGGVAVDPAKV 208
>ref|XP_470061.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|40786577|gb|AAR89852.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1312
Score = 114 bits (284), Expect = 2e-23
Identities = 53/83 (63%), Positives = 66/83 (78%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNK+F YLD FVVVFIDDILIYS+ EEEHAEHL+++L+ L++ K+YAK SKCEFW
Sbjct: 590 FMNLMNKVFVDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLEKLRKHKLYAKFSKCEFW 649
Query: 79 LSEVSFLGHIISDSGIVVTHQKL 101
L EV+FLGH+IS G+ V K+
Sbjct: 650 LKEVAFLGHVISAGGVAVDPAKV 672
>gb|AAP51922.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37530666|ref|NP_919635.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20042905|gb|AAM08733.1| Putative polyprotein [Oryza
sativa] gi|18997227|gb|AAL83344.1| Putative polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1443
Score = 113 bits (283), Expect = 2e-23
Identities = 52/78 (66%), Positives = 64/78 (81%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNK+F YLD FVVVFIDDILIYSR++EEH EHL++ L++L+E ++YAK SKCEFW
Sbjct: 639 FMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEMLREHQLYAKFSKCEFW 698
Query: 79 LSEVSFLGHIISDSGIVV 96
LSEV FLGH+IS G+ V
Sbjct: 699 LSEVKFLGHVISAGGVAV 716
>emb|CAD39356.2| OSJNBa0059H15.7 [Oryza sativa (japonica cultivar-group)]
gi|50921661|ref|XP_471191.1| OSJNBa0059H15.7 [Oryza
sativa (japonica cultivar-group)]
Length = 920
Score = 113 bits (283), Expect = 2e-23
Identities = 53/83 (63%), Positives = 66/83 (78%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNK+F YLD FVVVFIDDILIYS+ EEEHAEHL+++L+ L++ K+YAK SKCEFW
Sbjct: 256 FMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLEKLQKHKLYAKFSKCEFW 315
Query: 79 LSEVSFLGHIISDSGIVVTHQKL 101
L EV+FLGH+IS G+ V K+
Sbjct: 316 LKEVAFLGHVISAGGVAVDPVKV 338
>ref|XP_472504.1| OSJNBb0049I21.5 [Oryza sativa (japonica cultivar-group)]
gi|38346969|emb|CAE02265.2| OSJNBb0049I21.5 [Oryza
sativa (japonica cultivar-group)]
Length = 1644
Score = 113 bits (282), Expect = 3e-23
Identities = 52/83 (62%), Positives = 66/83 (78%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F MNK+F YLD F+VVFIDDILIYS+ EEEHAEHL+++L+ L++ K+YAK SKCEFW
Sbjct: 765 FMNLMNKVFMDYLDKFMVVFIDDILIYSKDEEEHAEHLRLVLEKLRKHKLYAKFSKCEFW 824
Query: 79 LSEVSFLGHIISDSGIVVTHQKL 101
L EV+FLGH+IS G+ V K+
Sbjct: 825 LKEVAFLGHVISAGGVAVDPTKV 847
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.372 0.167 0.652
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,022,030,128
Number of Sequences: 2540612
Number of extensions: 32685492
Number of successful extensions: 163413
Number of sequences better than 10.0: 1496
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 161501
Number of HSP's gapped (non-prelim): 1891
length of query: 818
length of database: 863,360,394
effective HSP length: 136
effective length of query: 682
effective length of database: 517,837,162
effective search space: 353164944484
effective search space used: 353164944484
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.9 bits)
S2: 80 (35.4 bits)
Medicago: description of AC146794.13