BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146791.8 + phase: 0
(715 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana] g... 943 0.0
ref|XP_470471.1| putative chloroplastic RNA-binding protein, wit... 633 e-180
ref|XP_470472.1| putative chloroplastic RNA-binding protein, wit... 607 e-172
emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [R... 474 e-132
emb|CAC01941.1| RSP67.2 [Raphanus sativus] 473 e-131
dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis tha... 459 e-127
emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Ara... 456 e-127
emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thal... 452 e-125
ref|NP_193372.2| chloroplastic RNA-binding protein P67, putative... 452 e-125
dbj|BAC42129.1| unknown protein [Arabidopsis thaliana] gi|288274... 173 2e-41
gb|AAF79278.1| F14D16.2 [Arabidopsis thaliana] 173 2e-41
ref|NP_177613.1| pentatricopeptide (PPR) repeat-containing prote... 166 2e-39
dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana] g... 157 1e-36
ref|XP_478960.1| putative pentatricopeptide (PPR) repeat-contain... 153 2e-35
ref|NP_177623.1| pentatricopeptide (PPR) repeat-containing prote... 150 1e-34
emb|CAB86040.1| putative protein [Arabidopsis thaliana] gi|15242... 149 2e-34
gb|AAT85125.1| 'unknown protein, contains pentatricopeptide (PPR... 142 5e-32
ref|NP_910039.1| putative chloroplast RNA processing protein [O... 140 1e-31
gb|AAP54425.1| putative chloroplast RNA processing protein [Oryz... 139 3e-31
gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana] gi|300... 139 4e-31
>dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana]
gi|15237467|ref|NP_199470.1| pentatricopeptide (PPR)
repeat-containing protein [Arabidopsis thaliana]
Length = 711
Score = 943 bits (2437), Expect = 0.0
Identities = 467/710 (65%), Positives = 570/710 (79%), Gaps = 7/710 (0%)
Query: 1 MATSLSSSIHISFLDTKT-TRTRFKFPPTTTTLKSHRRFLISSSKSIPDSETTPPNNNNN 59
MAT L+++I + F + T+ F + +S R L S S+ +T
Sbjct: 1 MATVLTTAIDVCFNPQNSDTKKHSLFLKPSLFRQSRSRKLNISCSSLKQPKTLEEEPITT 60
Query: 60 KKNSSLSDQLASLANTTLSTVPENQPKVLSKPKPTWVNPTKTKRPVLSHQRHKRSSVSYN 119
K SLS+QL L+ TTL + Q ++LSKPK WVNPT+ KR VLS QR KRS+ SYN
Sbjct: 61 K-TPSLSEQLKPLSATTLR---QEQTQILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYN 116
Query: 120 PQLREFQRFAQRLNNCDVSSSDEEFMVCLEEIPSSLTRGNALLVLNSLRPWQKTHMFFNW 179
PQ+++ + FA +LN+ + + EF+ L+EIP R NALLVLNSLR WQKTH FFNW
Sbjct: 117 PQIKDLRAFALKLNS-SIFTEKSEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTFFNW 175
Query: 180 IKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCN 239
+K+++L PMETIFYNVTMKSLRFGRQF +IEE+A +M+ GVELDNITYSTII+CAK+CN
Sbjct: 176 VKSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCN 235
Query: 240 LFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFS 299
L++KA+ WFERMYKTGLMPDEVT+SAILDVY++ GKVEEV++L+ER ATGWKPD I FS
Sbjct: 236 LYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFS 295
Query: 300 VLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDS 359
VLGKMFGEAGDYDGIRYVLQEMKS+ V+PN+VVYNTLLEAMG+AGKPG ARSLF EM+++
Sbjct: 296 VLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEA 355
Query: 360 GIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEA 419
G+ PNEKTLTA++KIYGKARW++DAL+LW+ MK WPMDFILYNTLLNMCAD+GL EEA
Sbjct: 356 GLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEA 415
Query: 420 ETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQ 479
E LF DMK+S C+PD++SYTAMLNIYGS G +KAM+LFEEM K G+++NVMGCTCL+Q
Sbjct: 416 ERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQ 475
Query: 480 CLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQRANPKL 539
CLGKA IDD+V VFD+S++RGVKPDDRLCGCLLSV++L + S+D EKV+ACL+RAN KL
Sbjct: 476 CLGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERANKKL 535
Query: 540 VAFIQLIVDEETSFETVKEEFKAIMSNAVVEVRRPFCNCLIDICRNKDLVERAHELLYLG 599
V F+ LIVDE+T +ETVKEEFK +++ VE RRPFCNCLIDICR + ERAHELLYLG
Sbjct: 536 VTFVNLIVDEKTEYETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELLYLG 595
Query: 600 TLYGFYPSLHNKTQYEWCLDVRTLSVGAALTALEEWMTTLTKIVKREEALPDLFLAQTGT 659
TL+G YP LHNKT EW LDVR+LSVGAA TALEEWM TL I+KR+E LP+LFLAQTGT
Sbjct: 596 TLFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQTGT 655
Query: 660 GAHKFAQGLNISFASHLRKLAAPFRQSEDKVGCFIATKEDLISWVQSNSP 709
G H+F+QGL SFA HL++L+APFRQS D+ G F+ATKEDL+SW++S P
Sbjct: 656 GTHRFSQGLANSFALHLQQLSAPFRQS-DRPGIFVATKEDLVSWLESKFP 704
>ref|XP_470471.1| putative chloroplastic RNA-binding protein, with alternative
splicing isoforms [Oryza sativa (japonica
cultivar-group)] gi|41393251|gb|AAS01974.1| putative
chloroplastic RNA-binding protein, with alternative
splicing isoforms [Oryza sativa (japonica
cultivar-group)]
Length = 884
Score = 633 bits (1632), Expect = e-180
Identities = 332/668 (49%), Positives = 452/668 (66%), Gaps = 21/668 (3%)
Query: 56 NNNNKKNSSLSDQLASLANTTLSTVPENQPKVLSKPKPTWVNPTKTKRPVLSHQRHKRSS 115
++++ + SL++QL L+ L P P+PTWVNP+K K VLS +RH+R S
Sbjct: 38 SSSSSSSPSLAEQLEPLSRRLLHGKPTPTQHA---PEPTWVNPSKPKPTVLSLRRHRRRS 94
Query: 116 VSYNPQLREFQRFAQRL----NNCDVSSSDEEFMVCLEEIPSSLTRGNALLVLNSLRP-W 170
S +P Q + + + D++ + +F S + +ALL+LN L P W
Sbjct: 95 PSSHPSSAPLQPLLRAIRALPDAADLAPTLHDFF----PPASPPSTSDALLLLNYLHPSW 150
Query: 171 QKTHMFFNWIKT--QNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITY 228
+K+ W++ P++TI +NV +KSLR RQ+ E LA M+ GV LDNITY
Sbjct: 151 RKSLSLLCWLRALPDGAFPLDTIVFNVALKSLRAARQWPQAERLALDMLASGVPLDNITY 210
Query: 229 STIISCAKKCNLFDKAVYWFERMYKT-GLMPDEVTFSAILDVYARLGKVEEVVNLFERGR 287
ST+I+ A++C FDKAV WFERMY + G++PDEVT+SAILDVYA+LG EEV+ LF+R R
Sbjct: 211 STLITAARRCRQFDKAVEWFERMYASDGVLPDEVTYSAILDVYAQLGMKEEVLALFDRAR 270
Query: 288 ATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 347
+GWKPD + F+VL KMFGEAGDYDGI++V +EM+ +G++PN+ VYN LLEA+GK GKPG
Sbjct: 271 GSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPG 330
Query: 348 FARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLL 407
AR+LFEEM G+ PN +TLTA+ KIYG+ARW +DAL+LW++M+E P D IL NTLL
Sbjct: 331 LARNLFEEMTAEGVEPNARTLTALAKIYGRARWGRDALQLWEQMREKKLPADNILCNTLL 390
Query: 408 NMCADVGLIEEAETLFRDMKQ---SEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSK 464
+MCADVGL+ EAE LF +MK + KPD WSYTAM+NIYGS G D+A++LF EM +
Sbjct: 391 SMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSGDADRALQLFAEMVE 450
Query: 465 FGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKD 524
GIE N+M T +IQCLGKA I + V V + + +G+KPDDRLCGCLLSVV+LS G +
Sbjct: 451 SGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEAGMAKGLKPDDRLCGCLLSVVALSSGD-E 509
Query: 525 QEKVLACLQRANPKLVAFIQLIVDEETSFETVKEEFKAIMSNAVVEVRRPFCNCLIDICR 584
E +LACL++ LV I+++ D E ++ E K I+++A EVRRP+CNCLIDICR
Sbjct: 510 TEVILACLEKVRSNLVKLIRMLGDARVGVEDLRVELKGILNSAAPEVRRPYCNCLIDICR 569
Query: 585 NKDL-VERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTLSVGAALTALEEWMTTLTKIV 643
N ERA EL L YG Y +H + + EW LD+R+LSVGAA TA ++WM T+ +
Sbjct: 570 NHGYPSERAVELFRLARHYGLYSKIHTRKEEEWSLDLRSLSVGAAKTAFDDWMKTIRE-H 628
Query: 644 KREEALPDLFLAQTGTGAHKFAQGLNISFASHLRKLAAPFRQSEDKVGCFIATKEDLISW 703
+ EEALP F TG+ HKFAQGL + ASHL ++ APFR S+ ++G FI++++DL+S
Sbjct: 629 EEEEALPQTFSVYTGSSTHKFAQGLATAVASHLEQVGAPFRASDSQLGSFISSRDDLLSC 688
Query: 704 VQSNSPSA 711
+S S+
Sbjct: 689 PNHSSSSS 696
>ref|XP_470472.1| putative chloroplastic RNA-binding protein, with alternative
splicing isoforms [Oryza sativa (japonica
cultivar-group)] gi|41393252|gb|AAS01975.1| putative
chloroplastic RNA-binding protein, with alternative
splicing isoforms [Oryza sativa (japonica
cultivar-group)]
Length = 640
Score = 607 bits (1566), Expect = e-172
Identities = 304/564 (53%), Positives = 404/564 (70%), Gaps = 10/564 (1%)
Query: 159 NALLVLNSLRP-WQKTHMFFNWIKT--QNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQ 215
+ALL+LN L P W+K+ W++ P++TI +NV +KSLR RQ+ E LA
Sbjct: 78 DALLLLNYLHPSWRKSLSLLCWLRALPDGAFPLDTIVFNVALKSLRAARQWPQAERLALD 137
Query: 216 MIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKT-GLMPDEVTFSAILDVYARLG 274
M+ GV LDNITYST+I+ A++C FDKAV WFERMY + G++PDEVT+SAILDVYA+LG
Sbjct: 138 MLASGVPLDNITYSTLITAARRCRQFDKAVEWFERMYASDGVLPDEVTYSAILDVYAQLG 197
Query: 275 KVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYN 334
EEV+ LF+R R +GWKPD + F+VL KMFGEAGDYDGI++V +EM+ +G++PN+ VYN
Sbjct: 198 MKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYN 257
Query: 335 TLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKEN 394
LLEA+GK GKPG AR+LFEEM G+ PN +TLTA+ KIYG+ARW +DAL+LW++M+E
Sbjct: 258 ALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRARWGRDALQLWEQMREK 317
Query: 395 GWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQ---SEHCKPDSWSYTAMLNIYGSEGA 451
P D IL NTLL+MCADVGL+ EAE LF +MK + KPD WSYTAM+NIYGS G
Sbjct: 318 KLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSGD 377
Query: 452 VDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGC 511
D+A++LF EM + GIE N+M T +IQCLGKA I + V V + + +G+KPDDRLCGC
Sbjct: 378 ADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEAGMAKGLKPDDRLCGC 437
Query: 512 LLSVVSLSQGSKDQEKVLACLQRANPKLVAFIQLIVDEETSFETVKEEFKAIMSNAVVEV 571
LLSVV+LS G + E +LACL++ LV I+++ D E ++ E K I+++A EV
Sbjct: 438 LLSVVALSSGD-ETEVILACLEKVRSNLVKLIRMLGDARVGVEDLRVELKGILNSAAPEV 496
Query: 572 RRPFCNCLIDICRNKDL-VERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTLSVGAALT 630
RRP+CNCLIDICRN ERA EL L YG Y +H + + EW LD+R+LSVGAA T
Sbjct: 497 RRPYCNCLIDICRNHGYPSERAVELFRLARHYGLYSKIHTRKEEEWSLDLRSLSVGAAKT 556
Query: 631 ALEEWMTTLTKIVKREEALPDLFLAQTGTGAHKFAQGLNISFASHLRKLAAPFRQSEDKV 690
A ++WM T+ + + EEALP F TG+ HKFAQGL + ASHL ++ APFR S+ ++
Sbjct: 557 AFDDWMKTIRE-HEEEEALPQTFSVYTGSSTHKFAQGLATAVASHLEQVGAPFRASDSQL 615
Query: 691 GCFIATKEDLISWVQSNSPSASIA 714
G FI++++DL+SW+ + S +A
Sbjct: 616 GSFISSRDDLLSWLHTTMSSPDVA 639
>emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus]
Length = 700
Score = 474 bits (1220), Expect = e-132
Identities = 249/636 (39%), Positives = 393/636 (61%), Gaps = 13/636 (2%)
Query: 82 ENQPKVLSKPKPTWVNPTKTKRPVLSHQRHKRSSVSYNPQLREFQRFAQRLNNCDVSSSD 141
E P + WVNP K P S R K SY+ + + A+ L++C + +D
Sbjct: 74 EANPPASGSKRYAWVNP---KSPRASQLRRK----SYDSRYSSLVKLAESLDSCPANEAD 126
Query: 142 EEFMVCLEEIPSSLTRGNALLVLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLR 201
++ + S L +A++ LN++ + + N + E I YNVTMK R
Sbjct: 127 VSDVIA--KFGSKLFEQDAVVTLNNMTNPETAPLVLNNLLETLKPTREVILYNVTMKVFR 184
Query: 202 FGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEV 261
+ E+L +M+ GV+ DN T++T+ISCA++C L +AV WFE+M GL PD V
Sbjct: 185 KSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPKRAVEWFEKMPSFGLEPDNV 244
Query: 262 TFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEM 321
T +A++D Y R G VE ++L++R R W+ DP+TFS L +++G AG+YDG + +EM
Sbjct: 245 TLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEM 304
Query: 322 KSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWS 381
KSLGV+PNLV+YN LL++MGKA +P A + +++I +G PN T A+I+ YG+AR+
Sbjct: 305 KSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYG 364
Query: 382 KDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTA 441
+DAL ++++MK G + ILYNTLL+MCAD+G ++EA +F+DMK S C+PDSW++++
Sbjct: 365 EDALVIYRQMKGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSS 424
Query: 442 MLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERG 501
++ +Y G V +A EM + G E + T LIQC GKA ++DD+V+ F+ +E G
Sbjct: 425 LITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELG 484
Query: 502 VKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQRANPKLVAFIQLIVDEETSFETV-KEEF 560
++PDDR CGCLL+V++ + +++ K++ C+++A PKL ++++V+EE E V K+E
Sbjct: 485 IEPDDRFCGCLLNVMTQTP-TEEIGKLIECVEKAKPKLGRVVKMLVEEENCEEGVLKKEA 543
Query: 561 KAIMSNAVVEVRRPFCNCLIDICRNKDLVERAHELLYLGTLYGFYPSLHNKTQYEWCLDV 620
++ + +V + + NCLID+C N + +E+A E+L LG Y Y L +K+ +W L +
Sbjct: 544 SELIDSIGSDVNKAYLNCLIDLCVNLNKLEKACEILQLGLEYDIYSGLQSKSATQWSLHL 603
Query: 621 RTLSVGAALTALEEWMTTLTK-IVKREEALPDLFLAQTGTGAHKFA-QGLNISFASHLRK 678
++LS+GAALTAL WM L++ + E P L TG G HK++ +GL F SHL++
Sbjct: 604 KSLSLGAALTALHVWMNDLSEAALTSGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKE 663
Query: 679 LAAPFRQSEDKVGCFIATKEDLISWVQSNSPSASIA 714
L APF ++ DKVG F+ T +W++S SA ++
Sbjct: 664 LNAPFHEAPDKVGWFLTTSVAAKTWLESRRSSAEVS 699
>emb|CAC01941.1| RSP67.2 [Raphanus sativus]
Length = 700
Score = 473 bits (1216), Expect = e-131
Identities = 262/686 (38%), Positives = 411/686 (59%), Gaps = 18/686 (2%)
Query: 33 KSHRRFLISSSKSIPDSETTPPNNNNNKKNSSLSDQLASLANTTLSTVPENQPKVLSKPK 92
KS R +SS P+S ++ SL + L + N P SK +
Sbjct: 28 KSTPRSFVSSYN--PNSPPFHSRTLLQTRHVSLQEPLPQETQIEKPELDANPPASGSK-R 84
Query: 93 PTWVNPTKTKRPVLSHQRHKRSSVSYNPQLREFQRFAQRLNNCDVSSSDEEFMVCLEEIP 152
WVNP K P S R K SY+ + + A+ L++C + +D ++ +
Sbjct: 85 YAWVNP---KSPRASQLRRK----SYDSRYSSLVKLAESLDSCPPNEADVSDVIA--KFG 135
Query: 153 SSLTRGNALLVLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEEL 212
S L +A++ LN++ + + N + E I YNVTMK R + E+L
Sbjct: 136 SKLFEQDAVVALNNMTNPETAPLVLNNLLETLKPTREVILYNVTMKVFRKSKDLEKSEKL 195
Query: 213 AHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYAR 272
+M+ GV+ DN T++T+ISCA++C L ++AV WFE+M GL PD VT +A++D Y R
Sbjct: 196 FDEMLQRGVKPDNATFTTLISCARQCGLPNRAVEWFEKMPSFGLEPDNVTLAAMIDAYGR 255
Query: 273 LGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVV 332
G VE ++L++R R W+ DP+TFS L +++G AG+YDG + +EMKSLGV+PNLV+
Sbjct: 256 AGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLVI 315
Query: 333 YNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMK 392
YN LL++MGKA +P A + +++I +G PN T A+I+ YG+AR+ +DAL ++++MK
Sbjct: 316 YNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMK 375
Query: 393 ENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAV 452
G + +LYNTLL+MCAD+G ++EA +F+DMK S C+PDSW++++++ +Y G V
Sbjct: 376 GKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRV 435
Query: 453 DKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCL 512
+A EM + G E + T LIQC GKA ++DD+V+ F+ +E G++PDDR CGCL
Sbjct: 436 SEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCGCL 495
Query: 513 LSVVSLSQGSKDQ-EKVLACLQRANPKLVAFIQLIVDEETSFETV-KEEFKAIMSNAVVE 570
L+V ++Q K++ K++ C+++A PKL +++V+EE E V K+E ++ + +
Sbjct: 496 LNV--MTQTPKEEIGKLIGCVEKAKPKLGRVEKMLVEEENCEEGVLKKEASELIDSIGSD 553
Query: 571 VRRPFCNCLIDICRNKDLVERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTLSVGAALT 630
V + + NCLID+C N + +E+A E+L LG Y Y L +K+ +W L +++LS+GAALT
Sbjct: 554 VNKAYLNCLIDLCVNLNKLEKACEILQLGLEYDIYSGLQSKSDTQWSLHLKSLSLGAALT 613
Query: 631 ALEEWMTTLTK-IVKREEALPDLFLAQTGTGAHKFA-QGLNISFASHLRKLAAPFRQSED 688
AL WM L++ + E P L TG G HK++ +GL F SHL++L APF ++ D
Sbjct: 614 ALHVWMNDLSEAALTSGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPD 673
Query: 689 KVGCFIATKEDLISWVQSNSPSASIA 714
KVG F+ T +W++S SA ++
Sbjct: 674 KVGWFLTTSVAAKTWLESRRSSAEVS 699
>dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 702
Score = 459 bits (1180), Expect = e-127
Identities = 249/687 (36%), Positives = 407/687 (58%), Gaps = 19/687 (2%)
Query: 33 KSHRRFLISSSKSIPDSETTPPNNNNNKKNSSLSDQLASLANTTLSTVPENQPKVLSKPK 92
KS R +SS P+S N + S+ + + + L V P+ +
Sbjct: 29 KSTPRSFLSSYN--PNSSHFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIPEPTASKS 86
Query: 93 PTWVNPTKTKRPVLSHQRHKRSSVSYNPQLREFQRFAQRLNNCDVSSSDEEFMVC--LEE 150
WVNP K P S R K SY+ + + A+ L+ C + +D VC +
Sbjct: 87 YVWVNP---KSPRASQLRRK----SYDSRYSSLIKLAESLDACKPNEAD----VCDVITG 135
Query: 151 IPSSLTRGNALLVLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIE 210
L +A++ LN++ + + N + E I YNVTMK R + E
Sbjct: 136 FGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSE 195
Query: 211 ELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVY 270
+L +M++ G++ DN T++TIISCA++ + +AV WFE+M G PD VT +A++D Y
Sbjct: 196 KLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAY 255
Query: 271 ARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNL 330
R G V+ ++L++R R W+ D +TFS L +++G +G+YDG + +EMK+LGV+PNL
Sbjct: 256 GRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNL 315
Query: 331 VVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKR 390
V+YN L+++MG+A +P A+ +++++I +G PN T A+++ YG+AR+ DAL +++
Sbjct: 316 VIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYRE 375
Query: 391 MKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEG 450
MKE G + ILYNTLL+MCAD+G ++EA +F+DMK E C PDSW++++++ +Y G
Sbjct: 376 MKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSG 435
Query: 451 AVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCG 510
V +A +M + G E + T +IQC GKA ++DD+V+ FD +E G+ PDDR CG
Sbjct: 436 RVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCG 495
Query: 511 CLLSVVSLSQGSKDQEKVLACLQRANPKLVAFIQLIVDEETSFETV-KEEFKAIMSNAVV 569
CLL+V++ + S++ K++ C+++A PKL ++++V+E+ E V K+E ++ +
Sbjct: 496 CLLNVMTQTP-SEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGS 554
Query: 570 EVRRPFCNCLIDICRNKDLVERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTLSVGAAL 629
+V++ + NCLID+C N + +ERA E+L LG Y Y L +K+ +W L +++LS+GAAL
Sbjct: 555 DVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAAL 614
Query: 630 TALEEWMTTLTK-IVKREEALPDLFLAQTGTGAHKFA-QGLNISFASHLRKLAAPFRQSE 687
TAL WM L++ ++ E P L TG G HK++ +GL F SHL++L APF ++
Sbjct: 615 TALHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAP 674
Query: 688 DKVGCFIATKEDLISWVQSNSPSASIA 714
DKVG F+ T +W++S + ++
Sbjct: 675 DKVGWFLTTSVAAKAWLESRRSAGGVS 701
>emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana]
Length = 702
Score = 456 bits (1174), Expect = e-127
Identities = 248/687 (36%), Positives = 406/687 (58%), Gaps = 19/687 (2%)
Query: 33 KSHRRFLISSSKSIPDSETTPPNNNNNKKNSSLSDQLASLANTTLSTVPENQPKVLSKPK 92
KS R +SS P+S N + S+ + + + L V P+ +
Sbjct: 29 KSTPRSFLSSYN--PNSSHFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIPEPTASKS 86
Query: 93 PTWVNPTKTKRPVLSHQRHKRSSVSYNPQLREFQRFAQRLNNCDVSSSDEEFMVC--LEE 150
WVNP K P S R K SY+ + + A+ L+ C + +D VC +
Sbjct: 87 YVWVNP---KSPRASQLRRK----SYDSRYSSLIKLAESLDACKPNEAD----VCDVITG 135
Query: 151 IPSSLTRGNALLVLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIE 210
L +A++ LN++ + + N + E I YNVTMK R + E
Sbjct: 136 FGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSE 195
Query: 211 ELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVY 270
+L +M++ G++ DN T++TIISCA++ + +AV WFE+M G PD VT +A++D Y
Sbjct: 196 KLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAY 255
Query: 271 ARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNL 330
R G V+ ++L++R R W+ D +TFS L +++G +G+YDG + +EMK+LGV+PNL
Sbjct: 256 GRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNL 315
Query: 331 VVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKR 390
V+YN L+++MG+A +P A+ +++++I +G PN T A+++ YG+AR+ DAL +++
Sbjct: 316 VIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYRE 375
Query: 391 MKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEG 450
MKE G + ILYNTLL+MCAD+G ++EA +F+DMK E C PDSW++++++ +Y G
Sbjct: 376 MKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSG 435
Query: 451 AVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCG 510
V +A +M + G E + T +IQC GKA ++DD+V+ FD +E G+ PDDR CG
Sbjct: 436 RVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCG 495
Query: 511 CLLSVVSLSQGSKDQEKVLACLQRANPKLVAFIQLIVDEETSFETV-KEEFKAIMSNAVV 569
CLL+V++ + S++ K++ C+++A PKL ++++V+E+ E V K+E ++ +
Sbjct: 496 CLLNVMTQTP-SEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGS 554
Query: 570 EVRRPFCNCLIDICRNKDLVERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTLSVGAAL 629
+V++ + NCLID+C N + +ERA E+L LG Y Y L +K+ +W L +++LS+GAAL
Sbjct: 555 DVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAAL 614
Query: 630 TALEEWMTTLTK-IVKREEALPDLFLAQTGTGAHKFA-QGLNISFASHLRKLAAPFRQSE 687
TAL WM L++ ++ E P L TG G HK++ +GL F SHL++L APF ++
Sbjct: 615 TALHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAP 674
Query: 688 DKVGCFIATKEDLISWVQSNSPSASIA 714
DKVG F+ T +W++ + ++
Sbjct: 675 DKVGWFLTTSVAAKAWLEFRRSAGGVS 701
>emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana]
gi|7268388|emb|CAB78681.1| salt-inducible protein
homolog [Arabidopsis thaliana] gi|7485158|pir||F71430
hypothetical protein - Arabidopsis thaliana
Length = 777
Score = 452 bits (1163), Expect = e-125
Identities = 245/680 (36%), Positives = 402/680 (59%), Gaps = 17/680 (2%)
Query: 40 ISSSKSIPDSETTPPNNNNNKKNSSLSDQLASLANTTLSTVPENQPKVLSKPKPTWVNPT 99
+SS +IP N + S+ + + + L V P+ + WVNP
Sbjct: 109 VSSPLTIPILPHFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIPEPTASKSYVWVNP- 167
Query: 100 KTKRPVLSHQRHKRSSVSYNPQLREFQRFAQRLNNCDVSSSDEEFMVC--LEEIPSSLTR 157
K P S R K SY+ + + A+ L+ C + +D VC + L
Sbjct: 168 --KSPRASQLRRK----SYDSRYSSLIKLAESLDACKPNEAD----VCDVITGFGGKLFE 217
Query: 158 GNALLVLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMI 217
+A++ LN++ + + N + E I YNVTMK R + E+L +M+
Sbjct: 218 QDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDEML 277
Query: 218 DGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVE 277
+ G++ DN T++TIISCA++ + +AV WFE+M G PD VT +A++D Y R G V+
Sbjct: 278 ERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVD 337
Query: 278 EVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 337
++L++R R W+ D +TFS L +++G +G+YDG + +EMK+LGV+PNLV+YN L+
Sbjct: 338 MALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLI 397
Query: 338 EAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWP 397
++MG+A +P A+ +++++I +G PN T A+++ YG+AR+ DAL +++ MKE G
Sbjct: 398 DSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLS 457
Query: 398 MDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMK 457
+ ILYNTLL+MCAD ++EA +F+DMK E C PDSW++++++ +Y G V KA
Sbjct: 458 LTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSKAEA 517
Query: 458 LFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVS 517
++ + G E + T +IQC GKA ++DD+V+ FD +E G+ PDDR CGCLL+V++
Sbjct: 518 ALLQIREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMT 577
Query: 518 LSQGSKDQEKVLACLQRANPKLVAFIQLIVDEETSFETV-KEEFKAIMSNAVVEVRRPFC 576
+ S++ K++ C+++A PKL ++++V+E+ E V K+E ++ + +V++ +
Sbjct: 578 QTP-SEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYL 636
Query: 577 NCLIDICRNKDLVERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTLSVGAALTALEEWM 636
NCLID+C N + +ERA E+L LG Y Y L +K+ +W L +++LS+GAALTAL WM
Sbjct: 637 NCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVWM 696
Query: 637 TTLTK-IVKREEALPDLFLAQTGTGAHKFA-QGLNISFASHLRKLAAPFRQSEDKVGCFI 694
L++ ++ E P L TG G HK++ +GL F SHL++L APF ++ DKVG F+
Sbjct: 697 NDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFL 756
Query: 695 ATKEDLISWVQSNSPSASIA 714
T +W++S + ++
Sbjct: 757 TTSVAAKAWLESRRSAGGVS 776
>ref|NP_193372.2| chloroplastic RNA-binding protein P67, putative [Arabidopsis
thaliana]
Length = 688
Score = 452 bits (1163), Expect = e-125
Identities = 245/680 (36%), Positives = 402/680 (59%), Gaps = 17/680 (2%)
Query: 40 ISSSKSIPDSETTPPNNNNNKKNSSLSDQLASLANTTLSTVPENQPKVLSKPKPTWVNPT 99
+SS +IP N + S+ + + + L V P+ + WVNP
Sbjct: 20 VSSPLTIPILPHFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIPEPTASKSYVWVNP- 78
Query: 100 KTKRPVLSHQRHKRSSVSYNPQLREFQRFAQRLNNCDVSSSDEEFMVC--LEEIPSSLTR 157
K P S R K SY+ + + A+ L+ C + +D VC + L
Sbjct: 79 --KSPRASQLRRK----SYDSRYSSLIKLAESLDACKPNEAD----VCDVITGFGGKLFE 128
Query: 158 GNALLVLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMI 217
+A++ LN++ + + N + E I YNVTMK R + E+L +M+
Sbjct: 129 QDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDEML 188
Query: 218 DGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVE 277
+ G++ DN T++TIISCA++ + +AV WFE+M G PD VT +A++D Y R G V+
Sbjct: 189 ERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVD 248
Query: 278 EVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 337
++L++R R W+ D +TFS L +++G +G+YDG + +EMK+LGV+PNLV+YN L+
Sbjct: 249 MALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLI 308
Query: 338 EAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWP 397
++MG+A +P A+ +++++I +G PN T A+++ YG+AR+ DAL +++ MKE G
Sbjct: 309 DSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLS 368
Query: 398 MDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMK 457
+ ILYNTLL+MCAD ++EA +F+DMK E C PDSW++++++ +Y G V KA
Sbjct: 369 LTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSKAEA 428
Query: 458 LFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVS 517
++ + G E + T +IQC GKA ++DD+V+ FD +E G+ PDDR CGCLL+V++
Sbjct: 429 ALLQIREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMT 488
Query: 518 LSQGSKDQEKVLACLQRANPKLVAFIQLIVDEETSFETV-KEEFKAIMSNAVVEVRRPFC 576
+ S++ K++ C+++A PKL ++++V+E+ E V K+E ++ + +V++ +
Sbjct: 489 QTP-SEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYL 547
Query: 577 NCLIDICRNKDLVERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTLSVGAALTALEEWM 636
NCLID+C N + +ERA E+L LG Y Y L +K+ +W L +++LS+GAALTAL WM
Sbjct: 548 NCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVWM 607
Query: 637 TTLTK-IVKREEALPDLFLAQTGTGAHKFA-QGLNISFASHLRKLAAPFRQSEDKVGCFI 694
L++ ++ E P L TG G HK++ +GL F SHL++L APF ++ DKVG F+
Sbjct: 608 NDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFL 667
Query: 695 ATKEDLISWVQSNSPSASIA 714
T +W++S + ++
Sbjct: 668 TTSVAAKAWLESRRSAGGVS 687
>dbj|BAC42129.1| unknown protein [Arabidopsis thaliana] gi|28827402|gb|AAO50545.1|
unknown protein [Arabidopsis thaliana]
gi|42571539|ref|NP_973860.1| pentatricopeptide (PPR)
repeat-containing protein [Arabidopsis thaliana]
gi|15221893|ref|NP_173324.1| pentatricopeptide (PPR)
repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 173 bits (438), Expect = 2e-41
Identities = 128/531 (24%), Positives = 235/531 (44%), Gaps = 13/531 (2%)
Query: 183 QNL-LPMETIFYNVTMKSLR-FGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNL 240
QNL L ++ N +K + +G G L Q G + D TY+T++ +
Sbjct: 323 QNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQP---GFKHDGHTYTTMVGNLGRAKQ 379
Query: 241 FDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSV 300
F + M + G P+ VT++ ++ Y R + E +N+F + + G KPD +T+
Sbjct: 380 FGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCT 439
Query: 301 LGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSG 360
L + +AG D + Q M++ G+ P+ Y+ ++ +GKAG A LF EM+D G
Sbjct: 440 LIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499
Query: 361 IAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAE 420
PN T ++ ++ KAR ++AL+L++ M+ G+ D + Y+ ++ + G +EEAE
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 559
Query: 421 TLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQC 480
+F +M+Q PD Y +++++G G V+KA + ++ M G+ NV C L+
Sbjct: 560 AVFTEMQQKNWI-PDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLST 618
Query: 481 LGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQRANPKLV 540
+ +I + ++ + G++P + LLS + + D +
Sbjct: 619 FLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMASTGHPAH 678
Query: 541 AFIQLIVDEETSFETVK---EEFKAIMSNAVVEVRRPFCNCLIDICRNKDLVERAHELLY 597
F+ + E V+ F +M + E +R + ++D E A +
Sbjct: 679 MFLLKMPAAGPDGENVRNHANNFLDLMHSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWE 738
Query: 598 LGTLYGFYP-SLHNKTQYEWCLDVRTLSVGAALTALEEWMTTLTKIVKREEALPDLFLAQ 656
+ +P +L K+ W +++ +S G A+TAL + K + P
Sbjct: 739 VAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAWFRKQMLASGTCPSRIDIV 798
Query: 657 TGTGAHKFAQGLNI---SFASHLRKLAAPFRQSEDKVGCFIATKEDLISWV 704
TG G G ++ + L +PF GCF+ + E L W+
Sbjct: 799 TGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESGNSGCFVGSGEPLNRWL 849
Score = 68.6 bits (166), Expect = 7e-10
Identities = 62/278 (22%), Positives = 124/278 (44%), Gaps = 8/278 (2%)
Query: 319 QEMKSLGVQPNLVVYNTLLEAMGKAGKP-GFARSLFEEMIDSGIAPNEKTLTAVIKIYGK 377
+ +++LG++ + N +L+ M G GF L + G + T T ++ G+
Sbjct: 320 EALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQ---PGFKHDGHTYTTMVGNLGR 376
Query: 378 ARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSW 437
A+ +L M +G + + YN L++ + EA +F M+++ CKPD
Sbjct: 377 AKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAG-CKPDRV 435
Query: 438 SYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDIS 497
+Y +++I+ G +D AM +++ M G+ + + +I CLGKA + K+F
Sbjct: 436 TYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEM 495
Query: 498 VERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQRANPKLVAFIQLIVDEETSFETVK 557
V++G P+ ++ + + ++ ++ K+ +Q A + IV E
Sbjct: 496 VDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYL 555
Query: 558 EEFKAIMSNAVVE---VRRPFCNCLIDICRNKDLVERA 592
EE +A+ + + P L+D+ VE+A
Sbjct: 556 EEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 593
>gb|AAF79278.1| F14D16.2 [Arabidopsis thaliana]
Length = 977
Score = 173 bits (438), Expect = 2e-41
Identities = 128/531 (24%), Positives = 235/531 (44%), Gaps = 13/531 (2%)
Query: 183 QNL-LPMETIFYNVTMKSLR-FGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNL 240
QNL L ++ N +K + +G G L Q G + D TY+T++ +
Sbjct: 440 QNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQP---GFKHDGHTYTTMVGNLGRAKQ 496
Query: 241 FDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSV 300
F + M + G P+ VT++ ++ Y R + E +N+F + + G KPD +T+
Sbjct: 497 FGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCT 556
Query: 301 LGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSG 360
L + +AG D + Q M++ G+ P+ Y+ ++ +GKAG A LF EM+D G
Sbjct: 557 LIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 616
Query: 361 IAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAE 420
PN T ++ ++ KAR ++AL+L++ M+ G+ D + Y+ ++ + G +EEAE
Sbjct: 617 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 676
Query: 421 TLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQC 480
+F +M+Q PD Y +++++G G V+KA + ++ M G+ NV C L+
Sbjct: 677 AVFTEMQQKNWI-PDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLST 735
Query: 481 LGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQRANPKLV 540
+ +I + ++ + G++P + LLS + + D +
Sbjct: 736 FLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMASTGHPAH 795
Query: 541 AFIQLIVDEETSFETVK---EEFKAIMSNAVVEVRRPFCNCLIDICRNKDLVERAHELLY 597
F+ + E V+ F +M + E +R + ++D E A +
Sbjct: 796 MFLLKMPAAGPDGENVRNHANNFLDLMHSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWE 855
Query: 598 LGTLYGFYP-SLHNKTQYEWCLDVRTLSVGAALTALEEWMTTLTKIVKREEALPDLFLAQ 656
+ +P +L K+ W +++ +S G A+TAL + K + P
Sbjct: 856 VAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAWFRKQMLASGTCPSRIDIV 915
Query: 657 TGTGAHKFAQGLNI---SFASHLRKLAAPFRQSEDKVGCFIATKEDLISWV 704
TG G G ++ + L +PF GCF+ + E L W+
Sbjct: 916 TGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESGNSGCFVGSGEPLNRWL 966
Score = 68.6 bits (166), Expect = 7e-10
Identities = 62/278 (22%), Positives = 124/278 (44%), Gaps = 8/278 (2%)
Query: 319 QEMKSLGVQPNLVVYNTLLEAMGKAGKP-GFARSLFEEMIDSGIAPNEKTLTAVIKIYGK 377
+ +++LG++ + N +L+ M G GF L + G + T T ++ G+
Sbjct: 437 EALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQ---PGFKHDGHTYTTMVGNLGR 493
Query: 378 ARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSW 437
A+ +L M +G + + YN L++ + EA +F M+++ CKPD
Sbjct: 494 AKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAG-CKPDRV 552
Query: 438 SYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDIS 497
+Y +++I+ G +D AM +++ M G+ + + +I CLGKA + K+F
Sbjct: 553 TYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEM 612
Query: 498 VERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQRANPKLVAFIQLIVDEETSFETVK 557
V++G P+ ++ + + ++ ++ K+ +Q A + IV E
Sbjct: 613 VDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYL 672
Query: 558 EEFKAIMSNAVVE---VRRPFCNCLIDICRNKDLVERA 592
EE +A+ + + P L+D+ VE+A
Sbjct: 673 EEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 710
>ref|NP_177613.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana] gi|5882748|gb|AAD55301.1| Contains 2 PF|01535
DUF domains. [Arabidopsis thaliana]
gi|25406372|pir||G96776 hypothetical protein F25A4.28
[imported] - Arabidopsis thaliana
Length = 855
Score = 166 bits (421), Expect = 2e-39
Identities = 117/492 (23%), Positives = 221/492 (44%), Gaps = 8/492 (1%)
Query: 220 GVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEV 279
G + D TY+T++ + F + + M + G P+ VT++ ++ Y R ++E
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEA 413
Query: 280 VNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 339
+N+F + + G +PD +T+ L + +AG D + Q M+ G+ P+ Y+ ++
Sbjct: 414 MNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINC 473
Query: 340 MGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMD 399
+GKAG A LF EM+ G PN T +I ++ KAR + AL+L++ M+ G+ D
Sbjct: 474 LGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPD 533
Query: 400 FILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLF 459
+ Y+ ++ + G +EEAE +F +M Q ++ PD Y +++++G G VDKA + +
Sbjct: 534 KVTYSIVMEVLGHCGFLEEAEGVFAEM-QRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWY 592
Query: 460 EEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLS 519
+ M + G+ NV C L+ + + + + + G+ P + LLS + +
Sbjct: 593 QAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDA 652
Query: 520 QGSKDQEKVLACLQRANPKLVAFIQLIVDEETSFETVKE---EFKAIMSNAVVEVRRPFC 576
+ + D + + F+ + + V++ F M + E +R
Sbjct: 653 RSNFDMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDRESKRGLM 712
Query: 577 NCLIDICRNKDLVERAHELLYLGTLYGFYP-SLHNKTQYEWCLDVRTLSVGAALTALEEW 635
+ ++D L E A + + YP +L K+ W +++ +S G A+ AL
Sbjct: 713 DAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEGTAVIALSRT 772
Query: 636 MTTLTKIVKREEALPDLFLAQTGTGAHKFAQGLNI---SFASHLRKLAAPFRQSEDKVGC 692
+ K + P TG G G ++ + L PF GC
Sbjct: 773 LAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFNFPFFTENGNSGC 832
Query: 693 FIATKEDLISWV 704
F+ + E L +W+
Sbjct: 833 FVGSGEPLKNWL 844
Score = 85.9 bits (211), Expect = 4e-15
Identities = 63/275 (22%), Positives = 121/275 (43%), Gaps = 1/275 (0%)
Query: 186 LPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAV 245
L +T Y+V + L L +M+ G + +T++ +I+ K ++ A+
Sbjct: 460 LSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETAL 519
Query: 246 YWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMF 305
+ M G PD+VT+S +++V G +EE +F + W PD + +L ++
Sbjct: 520 KLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLW 579
Query: 306 GEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNE 365
G+AG+ D Q M G++PN+ N+LL + + A +L + M+ G+ P+
Sbjct: 580 GKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSL 639
Query: 366 KTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRD 425
+T T ++ AR + D + M +G P L + D + + + F D
Sbjct: 640 QTYTLLLSCCTDARSNFDMGFCGQLMAVSGHPAHMFLLK-MPPAGPDGQKVRDHVSNFLD 698
Query: 426 MKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFE 460
SE + A+++ G ++A ++E
Sbjct: 699 FMHSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWE 733
Score = 41.6 bits (96), Expect = 0.091
Identities = 40/154 (25%), Positives = 63/154 (39%), Gaps = 7/154 (4%)
Query: 371 VIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSE 430
V I + +W A E + G+ MD N +L + A F +K+
Sbjct: 300 VSSILRRFKWGHAAEEA---LHNFGFRMDAYQANQVLKQMDNYA---NALGFFYWLKRQP 353
Query: 431 HCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDL 490
K D +YT M+ G + KL +EM + G + N + LI G+A + +
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEA 413
Query: 491 VKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKD 524
+ VF+ E G +P DR+ C L + G D
Sbjct: 414 MNVFNQMQEAGCEP-DRVTYCTLIDIHAKAGFLD 446
>dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
gi|15242530|ref|NP_198814.1| pentatricopeptide (PPR)
repeat-containing protein [Arabidopsis thaliana]
Length = 678
Score = 157 bits (397), Expect = 1e-36
Identities = 122/478 (25%), Positives = 227/478 (46%), Gaps = 23/478 (4%)
Query: 41 SSSKSIPDSETTPPNNNNNKKNSSLSDQLASLANTTLSTVPENQPKVLSKPKPTW----- 95
SSS S+P T P+ + S++ + + + TV + ++ K W
Sbjct: 8 SSSLSLPLLPLTRPHIYTSIPFSTIPE---ARQRNLIFTVSASSSSESTQNKKVWRKQPE 64
Query: 96 VNPTKTKRPVLSHQRHKRSS-VSYNPQLREFQRFAQRLNN----CDVSSSDEEFMVCLEE 150
N T + + + H+R++RS+ + +N + E + N + S+ ++ + +
Sbjct: 65 KNTTSSFQALRKHRRYQRSAFLDHNVDMDELLASIHQTQNEKELFSLLSTYKDRQLSIRF 124
Query: 151 IPSSLTRGNALLVLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIE 210
+ S L+R N WQ++ +W+ + YNV ++++ +QF I
Sbjct: 125 MVSLLSREN---------DWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAH 175
Query: 211 ELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVY 270
L +M + D TYST+I+ K +FD A+ W ++M + + D V +S ++++
Sbjct: 176 GLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELS 235
Query: 271 ARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNL 330
RL + +++F R + +G PD + ++ + ++G+A + R +++EM GV PN
Sbjct: 236 RRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNT 295
Query: 331 VVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKR 390
V Y+TLL + K A S+F EM + A + T +I +YG+ K+A L+
Sbjct: 296 VSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWS 355
Query: 391 MKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEG 450
+++ + + YNT+L + + L EA LFR + Q + + + +Y M+ IYG
Sbjct: 356 LRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFR-LMQRKDIEQNVVTYNTMIKIYGKTM 414
Query: 451 AVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRL 508
+KA L +EM GIE N + + +I GKA ++D +F GV+ D L
Sbjct: 415 EHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVL 472
Score = 128 bits (322), Expect = 6e-28
Identities = 97/412 (23%), Positives = 194/412 (46%), Gaps = 10/412 (2%)
Query: 159 NALLVLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMID 218
N + + L + K F+ +K + P + + YN + + F L +M +
Sbjct: 230 NLIELSRRLCDYSKAISIFSRLKRSGITP-DLVAYNSMINVYGKAKLFREARLLIKEMNE 288
Query: 219 GGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEE 278
GV + ++YST++S + + F +A+ F M + D T + ++DVY +L V+E
Sbjct: 289 AGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKE 348
Query: 279 VVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 338
LF R +P+ ++++ + +++GEA + ++ + M+ ++ N+V YNT+++
Sbjct: 349 ADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIK 408
Query: 339 AMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPM 398
GK + A +L +EM GI PN T + +I I+GKA A L+++++ +G +
Sbjct: 409 IYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEI 468
Query: 399 DFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKL 458
D +LY T++ VGL+ A+ L ++K PD+ + I G ++A +
Sbjct: 469 DQVLYQTMIVAYERVGLMGHAKRLLHELK-----LPDNIPRETAITILAKAGRTEEATWV 523
Query: 459 FEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSL 518
F + + G ++ C+I + ++++VF+ G PD + +L+
Sbjct: 524 FRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGK 583
Query: 519 SQGSKDQEKVLACLQRAN---PKLVAFIQL-IVDEETSFETVKEEFKAIMSN 566
+ + + V +Q P V F L + + FE V+ F+ + S+
Sbjct: 584 QREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRLESD 635
Score = 60.8 bits (146), Expect = 1e-07
Identities = 43/173 (24%), Positives = 82/173 (46%), Gaps = 2/173 (1%)
Query: 224 DNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLF 283
DNI T I+ K ++A + F + +++G + D F ++++Y+R + V+ +F
Sbjct: 500 DNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVF 559
Query: 284 ERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 343
E+ R G+ PD +++ +G+ +++ V +EM+ G V+ +L
Sbjct: 560 EKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSSK 619
Query: 344 GKPGFARSLFEEMIDSGIAPNEKTLTAVIK-IYGKARWSKDALELWKRMKENG 395
SLF+ + +S N K L V+ +Y +A DA + RM+E G
Sbjct: 620 KDFEMVESLFQRL-ESDPNVNSKELHLVVAALYERADKLNDASRVMNRMRERG 671
Score = 50.4 bits (119), Expect = 2e-04
Identities = 50/255 (19%), Positives = 104/255 (40%), Gaps = 25/255 (9%)
Query: 364 NEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFIL----------------YNTLL 407
NEK L +++ Y K R + +EN W L YN +L
Sbjct: 104 NEKELFSLLSTY-KDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVL 162
Query: 408 NMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGI 467
+ A LF +M+Q PD ++Y+ ++ +G EG D A+ ++M + +
Sbjct: 163 RNVLRAKQFDIAHGLFDEMRQRA-LAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRV 221
Query: 468 ELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEK 527
+++ + LI+ + + + +F G+ PD +++V ++ ++
Sbjct: 222 SGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARL 281
Query: 528 VLACLQRAN--PKLVAFIQLI---VDEETSFETVKEEFKAIMSNAVVEVRRPFCNCLIDI 582
++ + A P V++ L+ V+ E + + N +++ CN +ID+
Sbjct: 282 LIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTT--CNIMIDV 339
Query: 583 CRNKDLVERAHELLY 597
D+V+ A L +
Sbjct: 340 YGQLDMVKEADRLFW 354
>ref|XP_478960.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa (japonica cultivar-group)]
gi|34393454|dbj|BAC82993.1| putative pentatricopeptide
(PPR) repeat-containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 784
Score = 153 bits (387), Expect = 2e-35
Identities = 88/305 (28%), Positives = 163/305 (52%), Gaps = 1/305 (0%)
Query: 209 IEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILD 268
+ EL M + GV D TY+T+ISC ++ L+ +A F+ M +G PD+VTF+++LD
Sbjct: 227 VVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLD 286
Query: 269 VYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQP 328
VY + + +E + + + G P +T++ L + + G + + QEM+ G++P
Sbjct: 287 VYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKP 346
Query: 329 NLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELW 388
++V Y TL+ + +AGK A ++EM+ +G PN T A+IK++G + + ++
Sbjct: 347 DVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVF 406
Query: 389 KRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGS 448
+ G+ D + +NTLL + GL E +F++MK++ + P+ +Y ++++ Y
Sbjct: 407 DEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI-PERDTYVSLISSYSR 465
Query: 449 EGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRL 508
G D AM++++ M + GI +V ++ L + + K+F ER KPD+
Sbjct: 466 CGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYS 525
Query: 509 CGCLL 513
LL
Sbjct: 526 YSSLL 530
Score = 142 bits (357), Expect = 5e-32
Identities = 98/375 (26%), Positives = 181/375 (48%), Gaps = 8/375 (2%)
Query: 170 WQKTHMFFNWIKTQNLLPMETIF---YNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNI 226
+++ F+ +K P + F +V K+ R +I+E+ G +
Sbjct: 259 YKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERV----GCPPSVV 314
Query: 227 TYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERG 286
TY+++IS K L ++AV + M G+ PD VT++ ++ R GK++ + ++
Sbjct: 315 TYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEM 374
Query: 287 RATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 346
G KP+ T++ L KM G G + + V E +S G P++V +NTLL G+ G
Sbjct: 375 VRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLD 434
Query: 347 GFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTL 406
+F+EM +G P T ++I Y + A++++KRM E G D YN +
Sbjct: 435 SEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAV 494
Query: 407 LNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFG 466
L+ A G E+AE LF +M++ + CKPD +SY+++L+ Y + +DK L +++
Sbjct: 495 LSALARGGRWEQAEKLFAEMEERD-CKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSER 553
Query: 467 IELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQE 526
IE + L+ K + + K F ++ D + ++S+ ++ + E
Sbjct: 554 IEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVE 613
Query: 527 KVLACLQRANPKLVA 541
K+L+ ++ + L A
Sbjct: 614 KILSLMKESAINLSA 628
Score = 129 bits (325), Expect = 3e-28
Identities = 90/353 (25%), Positives = 176/353 (49%), Gaps = 9/353 (2%)
Query: 159 NALLVLNSLR-PWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELA---H 214
NAL+ ++ +R + + F+ ++ +P + + +N + FG Q G+ E++
Sbjct: 387 NALIKMHGVRGKFPEMMAVFDEFRSAGFVP-DIVTWNTLLAV--FG-QNGLDSEVSGVFK 442
Query: 215 QMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLG 274
+M G + TY ++IS +C LFD A+ ++RM + G+ PD T++A+L AR G
Sbjct: 443 EMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGG 502
Query: 275 KVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYN 334
+ E+ LF KPD ++S L + A D ++ + ++ S ++P+ +
Sbjct: 503 RWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVK 562
Query: 335 TLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKEN 394
TL+ K A F E+ + + L A++ IYGK R + ++ MKE+
Sbjct: 563 TLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKES 622
Query: 395 GWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDK 454
+ YN+L++M + +G E+ E + ++K S +PD +SY ++ YG +G + +
Sbjct: 623 AINLSAATYNSLMHMYSRLGDCEKCENILTEIK-SSGVRPDRYSYNTVIYAYGRKGQMKE 681
Query: 455 AMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDR 507
A +LF EM G++ +V+ ++ ++ +++ V +G KP++R
Sbjct: 682 ASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNER 734
Score = 75.9 bits (185), Expect = 4e-12
Identities = 57/259 (22%), Positives = 115/259 (44%), Gaps = 1/259 (0%)
Query: 170 WQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYS 229
W++ F ++ ++ P E Y+ + + ++ ++ L+ + +E N
Sbjct: 504 WEQAEKLFAEMEERDCKPDE-YSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVK 562
Query: 230 TIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRAT 289
T++ K N +A F + + D +A++ +Y + V +V + + +
Sbjct: 563 TLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKES 622
Query: 290 GWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFA 349
T++ L M+ GD + +L E+KS GV+P+ YNT++ A G+ G+ A
Sbjct: 623 AINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEA 682
Query: 350 RSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNM 409
LF EM SG+ P+ T +K Y ++A+EL + M G + YN+++
Sbjct: 683 SRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEG 742
Query: 410 CADVGLIEEAETLFRDMKQ 428
G + +A+ ++ Q
Sbjct: 743 YCRNGKLTDAKIFVSNLPQ 761
>ref|NP_177623.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana] gi|5882738|gb|AAD55291.1| Contains 3 PF|01535
DUF17 domains. [Arabidopsis thaliana]
gi|12323908|gb|AAG51934.1| hypothetical protein;
81052-84129 [Arabidopsis thaliana]
gi|25406387|pir||A96778 hypothetical protein F9E10.30
[imported] - Arabidopsis thaliana
Length = 862
Score = 150 bits (379), Expect = 1e-34
Identities = 118/522 (22%), Positives = 220/522 (41%), Gaps = 42/522 (8%)
Query: 170 WQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYS 229
W+ F ++ + + P + + YN + + E + M DGG+ D TYS
Sbjct: 228 WEGLLGLFAEMRHEGIQP-DIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYS 286
Query: 230 TIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRAT 289
++ K +K M G +PD +++ +L+ YA+ G ++E + +F + +A
Sbjct: 287 HLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA 346
Query: 290 GWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFA 349
G P+ T+SVL +FG++G YD +R + EMKS P+ YN L+E G+ G
Sbjct: 347 GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEV 406
Query: 350 RSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNM 409
+LF +M++ I P+ +T +I GK +DA ++ + M N Y ++
Sbjct: 407 VTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEA 466
Query: 410 CADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIEL 469
L EEA F M + P ++ ++L + G V ++ + + GI
Sbjct: 467 FGQAALYEEALVAFNTMHEVGS-NPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPR 525
Query: 470 NVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEKVL 529
N I+ + + ++ VK + + PD+R +LSV S ++ + +
Sbjct: 526 NRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQF 585
Query: 530 ACLQRAN--PKLVAFIQLIV--DEETSFETVKEEFKAIMSNAVVEVRRP----------- 574
++ ++ P ++ + ++ + ++ V E + ++SN V + +
Sbjct: 586 EEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDD 645
Query: 575 ------------------------FCNCLIDICRNKDLVERAHELLYLGTLYGFYPSLHN 610
F N L+D ERA +L T G +P L
Sbjct: 646 DSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPELFR 705
Query: 611 KTQYEWCLDVRTLSVGAALTALEEWMTTLTKIVKREEALPDL 652
K + W +DV +S G TAL W+ + ++ + + LP L
Sbjct: 706 KNKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLKGD-LPQL 746
Score = 135 bits (341), Expect = 4e-30
Identities = 100/373 (26%), Positives = 171/373 (45%), Gaps = 19/373 (5%)
Query: 228 YSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGR 287
Y+ +IS + L DK + F+ M G+ +++A+++ Y R G+ E + L +R +
Sbjct: 144 YTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMK 203
Query: 288 ATGWKPDPITFSVLGKMFGEAG-DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 346
P +T++ + G D++G+ + EM+ G+QP++V YNTLL A G
Sbjct: 204 NEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLG 263
Query: 347 GFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTL 406
A +F M D GI P+ T + +++ +GK R + +L M G D YN L
Sbjct: 264 DEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVL 323
Query: 407 LNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFG 466
L A G I+EA +F M Q+ C P++ +Y+ +LN++G G D +LF EM
Sbjct: 324 LEAYAKSGSIKEAMGVFHQM-QAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 467 IELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQE 526
+ + LI+ G+ ++V +F VE ++PD ++ +D
Sbjct: 383 TDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDAR 442
Query: 527 KVLACLQRANPKLVAFIQLIVDEETSFETVKEEF--KAIMSNAVVEVRRPFCNCLIDICR 584
K+L + + IV ++ V E F A+ A+V N + ++
Sbjct: 443 KILQYMTAND---------IVPSSKAYTGVIEAFGQAALYEEALVAF-----NTMHEVGS 488
Query: 585 NKDLVERAHELLY 597
N +E H LLY
Sbjct: 489 NPS-IETFHSLLY 500
Score = 84.0 bits (206), Expect = 2e-14
Identities = 67/275 (24%), Positives = 124/275 (44%), Gaps = 7/275 (2%)
Query: 298 FSVLGKMFGEAGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEM 356
F+++ K F GD+ +R + + +PN +Y ++ +G+ G +F+EM
Sbjct: 108 FALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEM 167
Query: 357 IDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLI 416
G++ + + TA+I YG+ + +LEL RMK + YNT++N CA GL
Sbjct: 168 PSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLD 227
Query: 417 EEAET-LFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCT 475
E LF +M+ E +PD +Y +L+ G D+A +F M+ GI ++ +
Sbjct: 228 WEGLLGLFAEMRH-EGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYS 286
Query: 476 CLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQRA 535
L++ GK ++ + + G PD LL + S K+ V +Q A
Sbjct: 287 HLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA 346
Query: 536 ----NPKLVAFIQLIVDEETSFETVKEEFKAIMSN 566
N + + + + ++ V++ F + S+
Sbjct: 347 GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS 381
>emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|15242557|ref|NP_195906.1| pentatricopeptide (PPR)
repeat-containing protein [Arabidopsis thaliana]
gi|11357908|pir||T48307 hypothetical protein F9G14.170 -
Arabidopsis thaliana
Length = 819
Score = 149 bits (377), Expect = 2e-34
Identities = 95/327 (29%), Positives = 169/327 (51%), Gaps = 4/327 (1%)
Query: 223 LDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNL 282
LDN + IIS K A F + + G D ++++++ +A G+ E VN+
Sbjct: 171 LDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNV 230
Query: 283 FERGRATGWKPDPITFSVLGKMFGEAG-DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 341
F++ G KP IT++V+ +FG+ G ++ I ++++MKS G+ P+ YNTL+
Sbjct: 231 FKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCK 290
Query: 342 KAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFI 401
+ A +FEEM +G + ++ T A++ +YGK+ K+A+++ M NG+ +
Sbjct: 291 RGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIV 350
Query: 402 LYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEE 461
YN+L++ A G+++EA L M + + KPD ++YT +L+ + G V+ AM +FEE
Sbjct: 351 TYNSLISAYARDGMLDEAMELKNQMAE-KGTKPDVFTYTTLLSGFERAGKVESAMSIFEE 409
Query: 462 MSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQG 521
M G + N+ I+ G + +++K+FD G+ PD LL+V +
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGM 469
Query: 522 SKDQEKVLACLQRAN--PKLVAFIQLI 546
+ V ++RA P+ F LI
Sbjct: 470 DSEVSGVFKEMKRAGFVPERETFNTLI 496
Score = 147 bits (371), Expect = 1e-33
Identities = 95/379 (25%), Positives = 176/379 (46%), Gaps = 5/379 (1%)
Query: 211 ELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVY 270
++ ++M+ G +TY+++IS + + D+A+ +M + G PD T++ +L +
Sbjct: 335 KVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394
Query: 271 ARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNL 330
R GKVE +++FE R G KP+ TF+ KM+G G + + + E+ G+ P++
Sbjct: 395 ERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDI 454
Query: 331 VVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKR 390
V +NTLL G+ G +F+EM +G P +T +I Y + + A+ +++R
Sbjct: 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRR 514
Query: 391 MKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEG 450
M + G D YNT+L A G+ E++E + +M+ CKP+ +Y ++L+ Y +
Sbjct: 515 MLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR-CKPNELTYCSLLHAYANGK 573
Query: 451 AVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCG 510
+ L EE+ IE + L+ K + + + F ERG PD
Sbjct: 574 EIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLN 633
Query: 511 CLLSVVSLSQGSKDQEKVLACLQRA--NPKLVAFIQLIVDEETSFETVKEE--FKAIMSN 566
++S+ Q VL ++ P + + L+ S + K E + I++
Sbjct: 634 SMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAK 693
Query: 567 AVVEVRRPFCNCLIDICRN 585
+ + + CRN
Sbjct: 694 GIKPDIISYNTVIYAYCRN 712
Score = 140 bits (354), Expect = 1e-31
Identities = 104/422 (24%), Positives = 185/422 (43%), Gaps = 40/422 (9%)
Query: 191 IFYNVTMKSL-RFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFE 249
I YNV + + G + I L +M G+ D TY+T+I+C K+ +L +A FE
Sbjct: 244 ITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFE 303
Query: 250 RMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAG 309
M G D+VT++A+LDVY + + +E + + G+ P +T++ L + G
Sbjct: 304 EMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDG 363
Query: 310 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLT 369
D + +M G +P++ Y TLL +AGK A S+FEEM ++G PN T
Sbjct: 364 MLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFN 423
Query: 370 AVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQS 429
A IK+YG + ++++ + G D + +NTLL + G+ E +F++MK++
Sbjct: 424 AFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483
Query: 430 EHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDD 489
P+ ++ +++ Y G+ ++AM ++ M
Sbjct: 484 GFV-PERETFNTLISAYSRCGSFEQAMTVYRRM--------------------------- 515
Query: 490 LVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQ--RANPKLVAFIQLIV 547
++ GV PD +L+ ++ + EKVLA ++ R P + + L+
Sbjct: 516 --------LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLH 567
Query: 548 DEETSFET-VKEEFKAIMSNAVVEVRRPFCNCLIDICRNKDLVERAHELLYLGTLYGFYP 606
E + + + V+E R L+ +C DL+ A GF P
Sbjct: 568 AYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSP 627
Query: 607 SL 608
+
Sbjct: 628 DI 629
Score = 101 bits (252), Expect = 7e-20
Identities = 73/294 (24%), Positives = 138/294 (46%), Gaps = 7/294 (2%)
Query: 215 QMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLG 274
+M G + T++T+IS +C F++A+ + RM G+ PD T++ +L AR G
Sbjct: 479 EMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGG 538
Query: 275 ---KVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLV 331
+ E+V+ E GR KP+ +T+ L + + + + +E+ S ++P V
Sbjct: 539 MWEQSEKVLAEMEDGRC---KPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAV 595
Query: 332 VYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRM 391
+ TL+ K A F E+ + G +P+ TL +++ IYG+ + A + M
Sbjct: 596 LLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYM 655
Query: 392 KENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGA 451
KE G+ YN+L+ M + ++E + R++ ++ KPD SY ++ Y
Sbjct: 656 KERGFTPSMATYNSLMYMHSRSADFGKSEEILREI-LAKGIKPDIISYNTVIYAYCRNTR 714
Query: 452 VDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPD 505
+ A ++F EM GI +V+ I ++ + V ++ G +P+
Sbjct: 715 MRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768
Score = 95.1 bits (235), Expect = 7e-18
Identities = 60/283 (21%), Positives = 132/283 (46%), Gaps = 1/283 (0%)
Query: 152 PSSLTRGNALLVLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEE 211
P T L L W+++ ++ P E + ++ + + G++ G++
Sbjct: 522 PDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSL-LHAYANGKEIGLMHS 580
Query: 212 LAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYA 271
LA ++ G +E + T++ KC+L +A F + + G PD T ++++ +Y
Sbjct: 581 LAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYG 640
Query: 272 RLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLV 331
R V + + + + G+ P T++ L M + D+ +L+E+ + G++P+++
Sbjct: 641 RRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDII 700
Query: 332 VYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRM 391
YNT++ A + + A +F EM +SGI P+ T I Y ++A+ + + M
Sbjct: 701 SYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYM 760
Query: 392 KENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKP 434
++G + YN++++ + +EA+ D++ + P
Sbjct: 761 IKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAP 803
>gb|AAT85125.1| 'unknown protein, contains pentatricopeptide (PPR) repeat, PF01535'
[Oryza sativa (japonica cultivar-group)]
Length = 793
Score = 142 bits (357), Expect = 5e-32
Identities = 92/345 (26%), Positives = 165/345 (47%), Gaps = 3/345 (0%)
Query: 170 WQKTHMFFNWIKTQNLLPMETIFYNVTMKSL-RFGRQFGIIEELAHQMIDGGVELDNITY 228
+++ F ++ Q ++P + YNV + R GR + I L +M GVE D+ T
Sbjct: 196 YERALQLFAELRRQGVVPT-IVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTA 254
Query: 229 STIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRA 288
ST+I+ + L D+AV +FE + G +P VT++A+L V+ + G E + + +
Sbjct: 255 STVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMED 314
Query: 289 TGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGF 348
+G +PD +T++ L + AG ++ L M S G+ PN YNT++ A G+
Sbjct: 315 SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDE 374
Query: 349 ARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLN 408
A +LF+ M +G PN T + + GK LE+ + M +G + + +NT+L
Sbjct: 375 ALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLA 434
Query: 409 MCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIE 468
+C G+ + + MK S + +Y +++ YG G+ A K+++EM G
Sbjct: 435 VCGKRGMEDYVTRVLNGMK-SCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFT 493
Query: 469 LNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLL 513
+ L+ L + + + ++ G KP+D+ LL
Sbjct: 494 PCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLL 538
Score = 130 bits (327), Expect = 1e-28
Identities = 115/460 (25%), Positives = 198/460 (43%), Gaps = 33/460 (7%)
Query: 46 IPDSETTPPNNNNNKKNSSLSDQLASLANTTLSTVPENQPKVLSKPKPTWVNPTKTKRPV 105
+P + PP+ + S L SL + P QP +P PT P P
Sbjct: 30 LPATPPPPPSRS--------SLPLDSLLLHLTAAPPPPQPPATRRPHPTPTPPHSFLSPA 81
Query: 106 LSHQRHKRSSVSYNPQLREFQRFAQRLNNCDVSSSDEEFMVCLEEIPSSLTRGNALLVLN 165
SS P L F +SS +E + ++PS L L
Sbjct: 82 AQSLVAAISSQPL-PSLPAF-----------LSSRRDELL--RSDLPSLLK------ALE 121
Query: 166 SLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQM-IDGGVELD 224
W+ W + + + +++L Q ++ +L +M + G LD
Sbjct: 122 LSGHWEWALALLRWASDEGAADAAAL--EMVVRALGREGQHDVVCDLLDEMPLPPGSRLD 179
Query: 225 NITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKV-EEVVNLF 283
Y+T++ + +++A+ F + + G++P VT++ +LDVY R+G+ +V L
Sbjct: 180 VRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALL 239
Query: 284 ERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 343
E RA G +PD T S + G G D +++K+ G P +V YN LL+ GKA
Sbjct: 240 EEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKA 299
Query: 344 GKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILY 403
G A + +EM DSG P+ T + Y +A + ++A + M G + Y
Sbjct: 300 GNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTY 359
Query: 404 NTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMS 463
NT++ A+VG ++EA LF MK++ + P+ +Y + + G + +++ EEMS
Sbjct: 360 NTVMTAYANVGRVDEALALFDRMKKNGYV-PNVNTYNLIFGMLGKKSRFTAMLEMLEEMS 418
Query: 464 KFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVK 503
+ G N + ++ GK D + +V + GV+
Sbjct: 419 RSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVE 458
Score = 115 bits (288), Expect = 5e-24
Identities = 96/402 (23%), Positives = 170/402 (41%), Gaps = 76/402 (18%)
Query: 176 FFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELA--HQMIDGGVELDNITYSTIIS 233
FF +K + +P + YN ++ FG+ E L +M D G + D +TY+ +
Sbjct: 273 FFEDLKARGHVPC-VVTYNALLQV--FGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAG 329
Query: 234 CAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKP 293
+ F++A + M GL+P+ T++ ++ YA +G+V+E + LF+R + G+ P
Sbjct: 330 TYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVP 389
Query: 294 DPIT----FSVLGK-------------------------------MFGEAGDYDGIRYVL 318
+ T F +LGK + G+ G D + VL
Sbjct: 390 NVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 449
Query: 319 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKA 378
MKS GV+ + YNTL+ A G+ G +A +++EMI SG P T A++ + +
Sbjct: 450 NGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQ 509
Query: 379 RWSKDALELWKRMKENGWPMDFILYNTLLNMCADVG------------------------ 414
A + +M +NG+ + Y+ LL A G
Sbjct: 510 GDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVIL 569
Query: 415 -----------LIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMS 463
+E E F+++K ++ KPD + +ML +Y G KA ++F+ +
Sbjct: 570 RTLVIANFKCRRLEGVEKAFQEVK-AQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIK 628
Query: 464 KFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPD 505
+ G+ +++ L+ K+ E + K+ VKPD
Sbjct: 629 QSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPD 670
Score = 113 bits (282), Expect = 2e-23
Identities = 75/300 (25%), Positives = 148/300 (49%), Gaps = 5/300 (1%)
Query: 209 IEELAHQMIDG----GVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFS 264
+E+ ++++G GVEL TY+T+IS +C A ++ M +G P T++
Sbjct: 441 MEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYN 500
Query: 265 AILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSL 324
A+L+V +R G ++ + G+KP+ ++S+L + + + G+ GI + +E+
Sbjct: 501 ALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVG 560
Query: 325 GVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDA 384
+ P+ V+ TL+ A K + F+E+ G P+ +++ +Y K A
Sbjct: 561 TIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKA 620
Query: 385 LELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLN 444
E++ +K++G D I YN+L++M A EAE + + +K S+ KPD SY ++N
Sbjct: 621 TEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQ-VKPDVVSYNTVIN 679
Query: 445 IYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKP 504
+ +G + +A ++ EM G+ V+ L+ ++ +V + + +KP
Sbjct: 680 GFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKP 739
Score = 82.4 bits (202), Expect = 5e-14
Identities = 65/278 (23%), Positives = 125/278 (44%), Gaps = 4/278 (1%)
Query: 155 LTRGNALL-VLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELA 213
LT NALL VL+ W + + P + Y++ ++ G IE +
Sbjct: 496 LTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQS-YSLLLQCYAKGGNAAGIESIE 554
Query: 214 HQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARL 273
++ G + + T++ KC + F+ + G PD V F+++L +YA+
Sbjct: 555 KEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKN 614
Query: 274 GKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVY 333
G + +F+ + +G PD IT++ L M+ ++ + +L+++KS V+P++V Y
Sbjct: 615 GLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSY 674
Query: 334 NTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRM-K 392
NT++ K G A+ + EMI G+AP T ++ Y +A E+ M
Sbjct: 675 NTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIH 734
Query: 393 ENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSE 430
N PM+ + Y +++ +EA ++ ++
Sbjct: 735 HNLKPME-LTYRRVVDSYCKAKRYDEAREFLSEISDTD 771
Score = 77.0 bits (188), Expect = 2e-12
Identities = 51/222 (22%), Positives = 109/222 (48%), Gaps = 1/222 (0%)
Query: 185 LLPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKA 244
+ P I + + + + R G+ E+ ++ G + D + ++++++ K L+ KA
Sbjct: 562 IFPSWVILRTLVIANFKCRRLEGV-EKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKA 620
Query: 245 VYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKM 304
F+ + ++GL PD +T+++++D+YA+ + E + ++ +++ KPD ++++ +
Sbjct: 621 TEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVING 680
Query: 305 FGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPN 364
F + G + +L EM + G+ P +V Y+TL+ AR + MI + P
Sbjct: 681 FCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPM 740
Query: 365 EKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTL 406
E T V+ Y KA+ +A E + + D L + L
Sbjct: 741 ELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKLQHML 782
Score = 47.0 bits (110), Expect = 0.002
Identities = 49/197 (24%), Positives = 86/197 (42%), Gaps = 4/197 (2%)
Query: 335 TLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMK-E 393
+LL+A+ +G +A +L D G A + L V++ G+ +L M
Sbjct: 115 SLLKALELSGHWEWALALLRWASDEGAA-DAAALEMVVRALGREGQHDVVCDLLDEMPLP 173
Query: 394 NGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEG-AV 452
G +D Y T+L+ + G E A LF ++++ + P +Y +L++YG G +
Sbjct: 174 PGSRLDVRAYTTVLHALSRAGRYERALQLFAELRR-QGVVPTIVTYNVVLDVYGRMGRSW 232
Query: 453 DKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCL 512
+ + L EEM G+E + + +I G+ +D V F+ RG P L
Sbjct: 233 PRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNAL 292
Query: 513 LSVVSLSQGSKDQEKVL 529
L V + + +VL
Sbjct: 293 LQVFGKAGNYTEALRVL 309
>ref|NP_910039.1| putative chloroplast RNA processing protein [Oryza sativa
(japonica cultivar-group)] gi|27545040|gb|AAO18446.1|
putative chloroplast RNA processing protein [Oryza
sativa (japonica cultivar-group)]
Length = 863
Score = 140 bits (353), Expect = 1e-31
Identities = 123/507 (24%), Positives = 217/507 (42%), Gaps = 15/507 (2%)
Query: 155 LTRGNALLVLNSLRPWQ-KTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELA 213
LT N LL ++R ++ M + +LP +T Y + + + EL
Sbjct: 246 LTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLP-DTASYRHIVDAFAGAGNLSRVAELF 304
Query: 214 HQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARL 273
+M G D Y ++ +AV +M G P T+ +LD+Y R
Sbjct: 305 AEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQ 364
Query: 274 GKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVY 333
G+ + V LF R T PD T++VL ++FG+ G + + + Q+M V+P++
Sbjct: 365 GRFDGVRELFREMRTTV-PPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTC 423
Query: 334 NTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKE 393
++ A G+ G AR + + + G+ P K T +++ G A ++A + M E
Sbjct: 424 ENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTE 483
Query: 394 NGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVD 453
G YN L N A GL +EAE +F M + + D S+ A++ Y +D
Sbjct: 484 IGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLD 543
Query: 454 KAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLL 513
A+K + EM K + ++ A ID+ + F+ P +L
Sbjct: 544 DAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMML 603
Query: 514 SVVSLSQGSKDQEKVLACLQ-----RANPKLVAFIQLIVDEETSFETVKEEFKAIMSNAV 568
S+ + + D +L ++ + + + I+ D++++++ V + ++ N+
Sbjct: 604 SLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIKGEYDDDSNWQMV----EYVLDNSN 659
Query: 569 VE---VRRPFCNCLIDICRNKDLVERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTLSV 625
+E F N L+D+ RA +L YG +P L T+ W DV +SV
Sbjct: 660 LEGCDYSLRFFNALLDVLWWFGQKGRAARVLDQALKYGLFPELFRDTKLVWSADVHRMSV 719
Query: 626 GAALTALEEWMTTLTKIVKREEALPDL 652
G +L A+ W+ L +K +E LP L
Sbjct: 720 GGSLVAVSVWLNKLYDRLKGDEDLPQL 746
Score = 63.5 bits (153), Expect = 2e-08
Identities = 64/316 (20%), Positives = 120/316 (37%), Gaps = 48/316 (15%)
Query: 258 PDEVTFSAILDVYARLGK--VEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIR 315
PDE + ++ V R G +++ + +F ++++ L + ++ R
Sbjct: 132 PDEHIHAIVIGVLGRQGPALLDKCLEVFHD--LPSESRTALSYTSLIAAYARNALHEEAR 189
Query: 316 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGF--------------------------- 348
+L +MK+ GV P YNT+L A +A P
Sbjct: 190 ELLDQMKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTY 249
Query: 349 ---------------ARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKE 393
+ L M+++G+ P+ + ++ + A EL+ M
Sbjct: 250 NTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSA 309
Query: 394 NGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVD 453
G D Y L+ VG EA + R M Q++ C P + +Y +L++YG +G D
Sbjct: 310 TGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQM-QADGCPPTAATYRVLLDLYGRQGRFD 368
Query: 454 KAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLL 513
+LF EM + + + L + G ++V++F + V+PD C ++
Sbjct: 369 GVRELFREM-RTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVM 427
Query: 514 SVVSLSQGSKDQEKVL 529
+D +VL
Sbjct: 428 VACGRGGLHEDAREVL 443
>gb|AAP54425.1| putative chloroplast RNA processing protein [Oryza sativa (japonica
cultivar-group)] gi|37535672|ref|NP_922138.1| putative
chloroplast RNA processing protein [Oryza sativa
(japonica cultivar-group)] gi|22128712|gb|AAM92824.1|
putative chloroplast RNA processing protein [Oryza
sativa (japonica cultivar-group)]
Length = 878
Score = 139 bits (350), Expect = 3e-31
Identities = 96/362 (26%), Positives = 170/362 (46%), Gaps = 3/362 (0%)
Query: 187 PMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVY 246
P + + YN + H+M+D G+ D +TYS+II+ K DKA+
Sbjct: 198 PPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAME 257
Query: 247 WFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFG 306
M K G+MPD +T+++IL Y G+ +E + ++ R+ G +P+ +T+S L
Sbjct: 258 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLC 317
Query: 307 EAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEK 366
+ G R + M G++P++ Y TLL+ G +L + M+ +GI P+
Sbjct: 318 KNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHH 377
Query: 367 TLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDM 426
+I Y K A+ ++ +M+++G + + Y T++++ G +++A F M
Sbjct: 378 VFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM 437
Query: 427 KQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAME 486
E P+ YT++++ + DKA +L EM GI LN + +I K
Sbjct: 438 -IDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 496
Query: 487 IDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQR--ANPKLVAFIQ 544
+ + K+FD+ V GVKPD L+ L+ + K+LA + P +V +
Sbjct: 497 VIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGT 556
Query: 545 LI 546
LI
Sbjct: 557 LI 558
Score = 114 bits (286), Expect = 8e-24
Identities = 80/299 (26%), Positives = 152/299 (50%), Gaps = 1/299 (0%)
Query: 215 QMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLG 274
QMID G+ + I Y+++I C+ +DKA M G+ + + F++I+D + + G
Sbjct: 436 QMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEG 495
Query: 275 KVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYN 334
+V E LF+ G KPD IT++ L AG D +L M S+GV+P++V Y
Sbjct: 496 RVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYG 555
Query: 335 TLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKEN 394
TL+ + + A +LF+EM+ SG++PN T +++ R + A EL+ + ++
Sbjct: 556 TLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKS 615
Query: 395 GWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDK 454
G ++ YN +L+ L +EA +F+++ ++ + ++ ++ M+ G +D+
Sbjct: 616 GTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD-LQLETRTFNIMIGALLKCGRMDE 674
Query: 455 AMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLL 513
A LF S G+ +V + + + L + +++L +F E G D R+ ++
Sbjct: 675 AKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIV 733
Score = 103 bits (258), Expect = 1e-20
Identities = 79/323 (24%), Positives = 152/323 (46%), Gaps = 9/323 (2%)
Query: 227 TYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNL-FER 285
TY+ +I C + D + K G D +TF+ +L + + +++ R
Sbjct: 94 TYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRR 153
Query: 286 GRATGWKPDPITFSVLGK-MFGEAGDYDGIR--YVLQEMKSLGVQPNLVVYNTLLEAMGK 342
G PD +++ L K + E + + +++ + + G P++V YNT+L K
Sbjct: 154 MTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFK 213
Query: 343 AGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFIL 402
G A S + EM+D GI P+ T +++I KA+ A+E+ M +NG D +
Sbjct: 214 EGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 273
Query: 403 YNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEM 462
YN++L+ G +EA + M+ S+ +P+ +Y++++N G +A K+F+ M
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKMR-SDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332
Query: 463 SKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGS 522
+K G+E ++ L+Q + ++ + D+ V G++PD + L+ + Q
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYA-KQEK 391
Query: 523 KDQEKVLACLQR---ANPKLVAF 542
DQ ++ R NP +V +
Sbjct: 392 VDQAMLVFSKMRQHGLNPNVVCY 414
Score = 96.7 bits (239), Expect = 2e-18
Identities = 72/315 (22%), Positives = 141/315 (43%), Gaps = 2/315 (0%)
Query: 152 PSSLTRGNALLVLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEE 211
P+ + G + VL ++F + + L P I Y + L ++ EE
Sbjct: 409 PNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP-NIIVYTSLIHGLCTCDKWDKAEE 467
Query: 212 LAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYA 271
L +M+D G+ L+ I +++II K ++ F+ M + G+ PD +T++ ++D
Sbjct: 468 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCC 527
Query: 272 RLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLV 331
GK++E L + G KPD +T+ L + D + +EM S GV PN++
Sbjct: 528 LAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNII 587
Query: 332 VYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRM 391
YN +L+ + + A+ L+ + SG T ++ K + +AL +++ +
Sbjct: 588 TYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 647
Query: 392 KENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGA 451
++ +N ++ G ++EA+ LF + PD +Y+ M +G+
Sbjct: 648 CLTDLQLETRTFNIMIGALLKCGRMDEAKDLFA-AHSANGLVPDVRTYSLMAENLIEQGS 706
Query: 452 VDKAMKLFEEMSKFG 466
+++ LF M + G
Sbjct: 707 LEELDDLFLSMEENG 721
Score = 94.0 bits (232), Expect = 2e-17
Identities = 74/321 (23%), Positives = 146/321 (45%), Gaps = 2/321 (0%)
Query: 216 MIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGK 275
M+ G++ D+ ++ +I K D+A+ F +M + GL P+ V + ++DV + G
Sbjct: 367 MVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGS 426
Query: 276 VEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNT 335
V++ + FE+ G P+ I ++ L +D ++ EM G+ N + +N+
Sbjct: 427 VDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNS 486
Query: 336 LLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENG 395
++++ K G+ + LF+ M+ G+ P+ T +I A +A +L M G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546
Query: 396 WPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKA 455
D + Y TL+N V +++A LF++M S P+ +Y +L A
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEM-VSSGVSPNIITYNIILQGLFHTRRTAAA 605
Query: 456 MKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSV 515
+L+ ++K G +L + ++ L K D+ +++F ++ + R ++
Sbjct: 606 KELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGA 665
Query: 516 VSLSQGSKDQEKVLACLQRAN 536
+ L G D+ K L AN
Sbjct: 666 L-LKCGRMDEAKDLFAAHSAN 685
Score = 61.6 bits (148), Expect = 9e-08
Identities = 38/154 (24%), Positives = 76/154 (48%)
Query: 191 IFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFER 250
I YN+ ++ L R+ +EL + G +L+ TY+ I+ K NL D+A+ F+
Sbjct: 587 ITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQN 646
Query: 251 MYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGD 310
+ T L + TF+ ++ + G+++E +LF A G PD T+S++ + E G
Sbjct: 647 LCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGS 706
Query: 311 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 344
+ + + M+ G + + N+++ + + G
Sbjct: 707 LEELDDLFLSMEENGCSADSRMLNSIVRKLLQRG 740
Score = 38.9 bits (89), Expect = 0.59
Identities = 38/182 (20%), Positives = 74/182 (39%), Gaps = 8/182 (4%)
Query: 135 CDVSSSDEEFMVCLEEIPSSLTRG----NALL--VLNSLRPWQKTHMFFNWIKTQNLLPM 188
C VS D+ + E + S ++ N +L + ++ R ++ + K+ L +
Sbjct: 562 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLEL 621
Query: 189 ETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWF 248
T YN+ + L + + ++L+ T++ +I KC D+A F
Sbjct: 622 ST--YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLF 679
Query: 249 ERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEA 308
GL+PD T+S + + G +EE+ +LF G D + + + +
Sbjct: 680 AAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQR 739
Query: 309 GD 310
GD
Sbjct: 740 GD 741
>gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|3004555|gb|AAC09028.1| putative salt-inducible
protein [Arabidopsis thaliana]
gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14
[Arabidopsis thaliana] gi|7485780|pir||T01622 probable
salt-inducible protein At2g18940 [imported] -
Arabidopsis thaliana gi|15224262|ref|NP_179484.1|
pentatricopeptide (PPR) repeat-containing protein
[Arabidopsis thaliana]
Length = 822
Score = 139 bits (349), Expect = 4e-31
Identities = 88/317 (27%), Positives = 154/317 (47%), Gaps = 2/317 (0%)
Query: 191 IFYNVTMKSL-RFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFE 249
+ YNV + + GR + I + +M G++ D T ST++S + L +A +F
Sbjct: 246 VTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFA 305
Query: 250 RMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAG 309
+ G P VT++A+L V+ + G E +++ + D +T++ L + AG
Sbjct: 306 ELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAG 365
Query: 310 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLT 369
V++ M GV PN + Y T+++A GKAGK A LF M ++G PN T
Sbjct: 366 FSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYN 425
Query: 370 AVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQS 429
AV+ + GK S + +++ MK NG + +NT+L +C + G+ + +FR+MK S
Sbjct: 426 AVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMK-S 484
Query: 430 EHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDD 489
+PD ++ +++ YG G+ A K++ EM++ G V L+ L + +
Sbjct: 485 CGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRS 544
Query: 490 LVKVFDISVERGVKPDD 506
V +G KP +
Sbjct: 545 GENVISDMKSKGFKPTE 561
Score = 130 bits (327), Expect = 1e-28
Identities = 94/370 (25%), Positives = 176/370 (47%), Gaps = 8/370 (2%)
Query: 161 LLVLNSL--RPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMID 218
++++NS+ +P FF+ +K++ L S + R + E L
Sbjct: 109 VVLVNSIVEQPLTGLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNS 168
Query: 219 GGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEE 278
G ++LD+ + + + + A +++ + D ++ IL Y+R GK E+
Sbjct: 169 GALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEK 228
Query: 279 VVNLFERGRATGWKPDPITFSVLGKMFGEAG-DYDGIRYVLQEMKSLGVQPNLVVYNTLL 337
++LFER + G P +T++V+ +FG+ G + I VL EM+S G++ + +T+L
Sbjct: 229 AIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVL 288
Query: 338 EAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWP 397
A + G A+ F E+ G P T A+++++GKA +AL + K M+EN P
Sbjct: 289 SACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCP 348
Query: 398 MDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMK 457
D + YN L+ G +EA + +M + P++ +YT +++ YG G D+A+K
Sbjct: 349 ADSVTYNELVAAYVRAGFSKEAAGVI-EMMTKKGVMPNAITYTTVIDAYGKAGKEDEALK 407
Query: 458 LFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVS 517
LF M + G N ++ LGK ++++K+ G P+ +L++
Sbjct: 408 LFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALC- 466
Query: 518 LSQGSKDQEK 527
G+K +K
Sbjct: 467 ---GNKGMDK 473
Score = 95.5 bits (236), Expect = 5e-18
Identities = 98/503 (19%), Positives = 206/503 (40%), Gaps = 96/503 (19%)
Query: 122 LREFQRFAQRLNNCDVSSSDEEFMVCLEEIPSSLTRGNALLVLNSLRPWQKTHMFFNWIK 181
LRE + F L +C + L+ + AL VL +
Sbjct: 297 LREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME------------- 343
Query: 182 TQNLLPMETIFYNVTMKS-LRFG---RQFGIIEELAHQMIDGGVELDNITYSTIISCAKK 237
+N P +++ YN + + +R G G+IE M GV + ITY+T+I K
Sbjct: 344 -ENSCPADSVTYNELVAAYVRAGFSKEAAGVIE----MMTKKGVMPNAITYTTVIDAYGK 398
Query: 238 CNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPIT 297
D+A+ F M + G +P+ T++A+L + + + E++ + ++ G P+ T
Sbjct: 399 AGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRAT 458
Query: 298 FSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG------------- 344
++ + + G G + V +EMKS G +P+ +NTL+ A G+ G
Sbjct: 459 WNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMT 518
Query: 345 KPGF----------------------ARSLFEEMIDSGIAPNEKTLTAVIKIYGK----- 377
+ GF ++ +M G P E + + +++ Y K
Sbjct: 519 RAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYL 578
Query: 378 --------------------------ARWSKDALELWKR----MKENGWPMDFILYNTLL 407
A + AL +R K++G+ D +++N++L
Sbjct: 579 GIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSML 638
Query: 408 NMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGI 467
++ + ++AE + +++ + PD +Y +++++Y G KA ++ + + K +
Sbjct: 639 SIFTRNNMYDQAEGILESIRE-DGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQL 697
Query: 468 ELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEK 527
+ +++ +I+ + + + V++ ERG++P +S + + E
Sbjct: 698 KPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIED 757
Query: 528 VLACLQR--ANPKLVAFIQLIVD 548
V+ C+ + P + F +++VD
Sbjct: 758 VIECMAKNDCRPNELTF-KMVVD 779
Score = 76.6 bits (187), Expect = 3e-12
Identities = 47/176 (26%), Positives = 89/176 (49%), Gaps = 6/176 (3%)
Query: 220 GVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLG---KV 276
G + D + +++++S + N++D+A E + + GL PD VT+++++D+Y R G K
Sbjct: 626 GYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKA 685
Query: 277 EEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTL 336
EE++ E+ + KPD ++++ + K F G +L EM G++P + YNT
Sbjct: 686 EEILKTLEKSQL---KPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTF 742
Query: 337 LEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMK 392
+ G + E M + PNE T V+ Y +A +A++ ++K
Sbjct: 743 VSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIK 798
Score = 75.5 bits (184), Expect = 6e-12
Identities = 65/312 (20%), Positives = 130/312 (40%), Gaps = 38/312 (12%)
Query: 155 LTRGNALL-VLNSLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELA 213
+T NALL L W+ + +K++ P ET Y++ ++ G + IE +
Sbjct: 526 VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETS-YSLMLQCYAKGGNYLGIERIE 584
Query: 214 HQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARL 273
+++ +G + + T++ KC + F K G PD V F+++L ++ R
Sbjct: 585 NRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRN 644
Query: 274 GKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVY 333
++ + E R G PD +T++ L M+ G+ +L+ ++ ++P+LV Y
Sbjct: 645 NMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSY 704
Query: 334 NTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKE 393
NT+++ + G A + EM + GI P
Sbjct: 705 NTVIKGFCRRGLMQEAVRMLSEMTERGIRP------------------------------ 734
Query: 394 NGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVD 453
YNT ++ +G+ E E + M +++ C+P+ ++ +++ Y G
Sbjct: 735 -----CIFTYNTFVSGYTAMGMFAEIEDVIECMAKND-CRPNELTFKMVVDGYCRAGKYS 788
Query: 454 KAMKLFEEMSKF 465
+AM ++ F
Sbjct: 789 EAMDFVSKIKTF 800
Score = 52.4 bits (124), Expect = 5e-05
Identities = 43/217 (19%), Positives = 90/217 (40%), Gaps = 2/217 (0%)
Query: 332 VYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRM 391
V + +G+ + A L +++ + + T ++ Y + + A++L++RM
Sbjct: 177 VIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERM 236
Query: 392 KENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGA 451
KE G + YN +L++ +G D +S+ K D ++ + +L+ EG
Sbjct: 237 KEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGL 296
Query: 452 VDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGC 511
+ +A + F E+ G E + L+Q GKA + + V E D
Sbjct: 297 LREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNE 356
Query: 512 LLSVVSLSQGSKDQEKVLACLQRAN--PKLVAFIQLI 546
L++ + SK+ V+ + + P + + +I
Sbjct: 357 LVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVI 393
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,187,328,532
Number of Sequences: 2540612
Number of extensions: 49925382
Number of successful extensions: 222067
Number of sequences better than 10.0: 1397
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 338
Number of HSP's that attempted gapping in prelim test: 199054
Number of HSP's gapped (non-prelim): 8293
length of query: 715
length of database: 863,360,394
effective HSP length: 135
effective length of query: 580
effective length of database: 520,377,774
effective search space: 301819108920
effective search space used: 301819108920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)
Medicago: description of AC146791.8