BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146790.3 + phase: 0 /pseudo
(1363 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 848 0.0
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 760 0.0
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 722 0.0
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 719 0.0
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 702 0.0
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 690 0.0
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 684 0.0
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 676 0.0
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 669 0.0
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 654 0.0
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 645 0.0
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 631 e-179
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 630 e-179
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 628 e-178
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 611 e-173
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 610 e-173
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 594 e-168
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 582 e-164
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 581 e-164
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 581 e-164
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 848 bits (2190), Expect = 0.0
Identities = 489/1392 (35%), Positives = 745/1392 (53%), Gaps = 46/1392 (3%)
Query: 3 PMKLLSW--NCRGLGNPRAIRALLRLIRIQNPQVVFLMETRLKSDEMERVRINCGFSSGL 60
P KL++W NCRGLG+ + L L++ P +VFL ET+++ + + + GFS
Sbjct: 3 PNKLVTWGRNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSF 62
Query: 61 FVPCDGFGKERACDIALLWMDSVNLSIRSYSLNHIMGRIEDVESGKYWSITGIYGYPDET 120
V C+G +AL W + +S+R ++ +H + + E W I+ +YG P
Sbjct: 63 AVSCEGLSG----GLALFWTTAYTVSLRGFN-SHFIDVLVSTEELPPWRISFVYGEPKRE 117
Query: 121 NKKKTWDLLRSLTPVEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLD 180
+ W+LLR L WLCCGDFN++L +E G RS + R+ ++DC L+D
Sbjct: 118 LRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLID 177
Query: 181 LGFNGYPFTWSNGRHGSGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSDHAAISIELD 240
LGF G FTWSN + + RLDR A+ EF + F + ++ SDH AISI+L
Sbjct: 178 LGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLS 237
Query: 241 VCLEDAHKKKLHV---FRFEKCWADDDRCEAMVRGSWN----NATGLASKIEAMQSLDSK 293
+ ++++ + FRFE W + +V SW GL +Q +
Sbjct: 238 --RRNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVS 295
Query: 294 FKEYITSE---IRKELLEIETQLNNHASWDGSPDNITKFRE---LEAKHSELLQTEETMW 347
K++ + +R+++L++E +L S SP N +E +E + EL + EE M
Sbjct: 296 LKDWSKASFGSVRRKILKMERKLK---SLRQSPVNDVVIQEEKLIEQQLCELFEKEEIMA 352
Query: 348 RQRSRATWLKEGDKNSKFFHAKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGL 407
RQRSR WL+EGD+N+ FFHA+A R + N IK++ D G ++ ++++ ++ L
Sbjct: 353 RQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENL 412
Query: 408 FTSSNPTTVDQTCLVVKDRLSPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFF 467
F+S ++++ + +++ + ++ EIK A+ QM KAPGPDG PALF+
Sbjct: 413 FSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFY 472
Query: 468 QKYWYIVGSEVVSLALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKI 527
Q +W I+ + + G L + E + + + LIPK N S ++FRPISLCNV+ KI
Sbjct: 473 QTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKI 532
Query: 528 VTKTIANRLKPILPEIMDEEQSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLD 587
+K +ANRLKP LP+I+ E QSAFV GRLITD+A++A EC H ++K+ K A+K+D
Sbjct: 533 ASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQ-HNKNPFFALKID 591
Query: 588 MAKAYDRIEWSFVKSMLQSMNFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQG 647
M KAYDR+EW+++ L + F ++ INT+++C+S+V Y + ING+ ++ P RG+RQG
Sbjct: 592 MMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQG 651
Query: 648 DPLSPYLFILCANVLSGLLKKEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEA 707
DP+SPYLF+LC LS LL K+E ++ GI+ R+ P I+HLLFADD + FA+A
Sbjct: 652 DPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNV 711
Query: 708 QCIISVLNTYQDASGQIVNLDKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVI 767
Q + + L +Y ASGQ +NL KS + + + + K + + + YLG+P
Sbjct: 712 QALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTE 771
Query: 768 FGRSKKEVFSFVQERVWKKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCD 827
G + F F+ ER+WK++ GW ++ LSRAG ET++KAVAQAIPNY+MSC+++P C+
Sbjct: 772 IGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICE 831
Query: 828 AVEGMLAKFWWASDEYKRKIHWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLAD 887
++ +A WW ++ K+K+HW W L K GG+GFR F+ FN+A+LG+Q WRLL D
Sbjct: 832 KMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTD 891
Query: 888 NNSLMSSILKSRYFPRTSISITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFK 947
+SL S +LK RYFP +S P + WRSL+ REL+ W +G+G+T++IF
Sbjct: 892 PDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFS 951
Query: 948 DNWIPGTRCTPIQRTEGTVDEDAVVADLIVHETRSWDRERIMASFNSFIAKKILSIPISF 1007
DNWIPG R + T DA V+ L+ + R WD + I + F IAK+IL IPIS
Sbjct: 952 DNWIPGFR-PQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQIPISR 1010
Query: 1008 RLPDDKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRG--------SDIWKQIWNF 1059
D +W +K G YSVRS ++ L +++ +S+S RG WK +W
Sbjct: 1011 HGDADFASWPHDKLGLYSVRSAYN-LARSEAFFADQSNSGRGMASRLLESQKDWKGLWKI 1069
Query: 1060 NGPRSAQNFLWRLASNILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVW- 1118
N P + LWR A L T L ++ I C CN + + H+FL CP A +W
Sbjct: 1070 NAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNRD-DTVEHVFLFCPFAAQIWE 1128
Query: 1119 -FSSPLGIHIPPN--SMCREWMELWLKKDDPLAVQVFGITLWRLWQGRNQLIFKNSPFDP 1175
+ + N S R+W+ +LK+ A + +T W +W+ RN N P
Sbjct: 1129 EIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGTVHP 1188
Query: 1176 ALIAQSAVLLVEEFNLANRKAACHP---ISRAPTRWCPPQTGTVKINVDAGVFTDGST-G 1231
+ + V+ N K ++A RW PP IN DA +F+ T G
Sbjct: 1189 QRVVIKILSYVDMILKHNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMG 1248
Query: 1232 WGFVARDHHGAVLFSATRKEEMMVTPLVAERLALRWCLSWAEGEQFTSLCIETDAEQVVH 1291
G + RD+ G L + + +V P +AE LA+R L A+ E + + +D V+
Sbjct: 1249 VGALIRDNTGKCLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIR 1308
Query: 1292 CL-LRRKKIAAIEFLILDCLDYLSRFSTCSVNFAGRSCNQVAHSLVGLAKTVGNICWVGS 1350
+ + + + +I D S F CS R N AHSL A+ +
Sbjct: 1309 RIQTSGRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLSNLAAHSLARNAELSTCTVYRSV 1368
Query: 1351 VPQQIYPSLCKD 1362
+P I LC D
Sbjct: 1369 IPDYIRDILCDD 1380
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 760 bits (1963), Expect = 0.0
Identities = 443/1369 (32%), Positives = 713/1369 (51%), Gaps = 69/1369 (5%)
Query: 4 MKLLSWNCRGLGNPRAIRALLRLIRIQNPQVVFLMETRLKSDEMERVRINCGFSSGLFVP 63
M++LSWNC+G+GN +R L + + P+V+FL ET+ + + +E V + GF V
Sbjct: 1 MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60
Query: 64 CDGFGKERACDIALLWMDSVNLSIRSYSLNHIMGRIEDVESGKYWSITGIYGYPDETNKK 123
G ++ +AL+W DSV + + I + + K + +T IYG P + +
Sbjct: 61 PIG----KSGGLALMWKDSVQIKVLQSDKRLIDALL--IWQDKEFYLTCIYGEPVQAERG 114
Query: 124 KTWDLLRSLTPVEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLDLGF 183
+ W+ L L W+ GDFN+++ EK GG R R + C L ++
Sbjct: 115 ELWERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNH 174
Query: 184 NGYPFTWSNGRHGSGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSDHAAISIELDVCL 243
+GY F+W R+ + CRLDR A+ +++ F + +L + SDH+ + L
Sbjct: 175 SGYQFSWYGNRNDE-LVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNL---- 229
Query: 244 EDAHKKKLHVFRFEKCWADDDRCEAMVRGSWNNATG-----LASKIEAMQSLDSKFKEYI 298
+ +K F+++K W + + ++ W+ + + KI + + SK+K
Sbjct: 230 VGDNWRKWAGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMMEKIASCRREISKWKRVS 289
Query: 299 TSEIRKELLEIETQLNNHASWDGSPDNITKFRELEAKHSELLQTEETMWRQRSRATWLKE 358
+ E++ +L+ A+ P + + L+ + S+ EE W+++SR W++
Sbjct: 290 KPSSAVRIQELQFKLD--AATKQIPFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRN 347
Query: 359 GDKNSKFFHAKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPT-TVD 417
GD+N+K+FHA K R N I+K+ D+ G W + + +V YF LF S + TV+
Sbjct: 348 GDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVE 407
Query: 418 QTCLVVKDRLSPEHVEWCNRSF----SPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYI 473
+ + L+P + N + + E++ A ++P K PGPDG+ +Q++W
Sbjct: 408 EL-----ENLTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWET 462
Query: 474 VGSEVVSLALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIA 533
+G ++ + G E +NKT I LIPK FRPISLCNV+ K++ K +A
Sbjct: 463 MGDQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMA 522
Query: 534 NRLKPILPEIMDEEQSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYD 593
NRLK ILP ++ E Q+AFV+GRLI+DN +IA E H + K + +A+K D++KAYD
Sbjct: 523 NRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYD 582
Query: 594 RIEWSFVKSMLQSMNFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPY 653
R+EW F++ ++ + F ++ I I++C+ +V YQ+LING P P RGLRQGDPLSPY
Sbjct: 583 RVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPY 642
Query: 654 LFILCANVLSGLLKKEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISV 713
LF++C +L +L+ E+ N+I G+++AR AP I+HLLFADD + + + + E II +
Sbjct: 643 LFVICTEMLVKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRI 702
Query: 714 LNTYQDASGQIVNLDKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKK 773
+ Y ASGQ VN KS + + +++ + ++ +++ I+ YLGLP F SK
Sbjct: 703 IEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKV 762
Query: 774 EVFSFVQERVWKKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGML 833
S++++R+ KK+ GW+ LS GKE L+KAVA A+P Y MSC+K+P+ C +E ++
Sbjct: 763 ATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVM 822
Query: 834 AKFWWASDEYKRKIHWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMS 893
A+FWW + + R +HW W L K GGLGF+ FN ALLGKQ WR++ + +SLM+
Sbjct: 823 AEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMA 882
Query: 894 SILKSRYFPRTSISITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWI-- 951
+ KSRYF ++ +G +P +AW+S+ +A+ L++ VIGNG T+ ++ D WI
Sbjct: 883 KVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGA 942
Query: 952 -PGTRCTPIQR----TEGTVDEDAVVADLIVHETRSWDRERIMASFNSFIAKKILSIPIS 1006
P ++R ++ + VV DL++ + R W+ + F + IL++
Sbjct: 943 KPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPG 1002
Query: 1007 FRLPDDKVTWQWEKSGEYSVRSGHHLLCE-----NKSKEVAESSSVRGSDIWKQIWNFNG 1061
+ D+ TW++ +SG YSV+SG+ ++ E N +EV + S I++QIW +
Sbjct: 1003 GKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSL---DPIFQQIWKLDV 1059
Query: 1062 PRSAQNFLWRLASNILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSS 1121
P +FLWR +N L NL+ + ++ ++SC C S E +NHL CP A+ W S
Sbjct: 1060 PPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAIS 1119
Query: 1122 PLGIHIPPNSMCREWME---------LWLKKDDPLAVQVFGI---TLWRLWQGRNQLIFK 1169
PL PP EW E L + K P + LWRLW+ RN L+FK
Sbjct: 1120 PL--PAPPGG---EWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFK 1174
Query: 1170 NSPFDPALIAQSAVLLVEEFNLANRKAACHPISRAPTR-----WCPPQTGTVKINVDAGV 1224
F + A E+ + N + P + TR W PP G VK N D
Sbjct: 1175 GREFTAPQVILKA---TEDMDAWNNRKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAW 1231
Query: 1225 FTD-GSTGWGFVARDHHGAVLFSATRKEEMMVTPLVAERLALRWCLSWAEGEQFTSLCIE 1283
D G+ G G+V R+H G +L+ R + L E ALRW + + + E
Sbjct: 1232 SKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFE 1291
Query: 1284 TDAEQVVHCLLRRKKIAAIEFLILDCLDYLSRFSTCSVNFAGRSCNQVA 1332
+D++ +V + I ++ I D + L F F R N VA
Sbjct: 1292 SDSQYLVSLIQNEMDIPSLAPRIQDIRNLLRHFEEVKFQFTRREGNNVA 1340
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 722 bits (1863), Expect = 0.0
Identities = 436/1292 (33%), Positives = 664/1292 (50%), Gaps = 65/1292 (5%)
Query: 45 DEMERVRINCGFSSGLFVPCDGFGKERACDIALLWMDSVNLSIRSYSLNHIMGRIEDVES 104
++M R+R G V +G +AL W +SV++ ++ + +I ++
Sbjct: 771 EKMSRLRGRLGLRGFTGVSSEGMSG----GLALYWDESVSVDVKDINKRYIDAYVQLSPE 826
Query: 105 GKYWSITGIYGYPDETNKKKTWDLLRSLTPVEEDMWLCCGDFNDILSNEEKAGGNIRSFL 164
W +T +YG P N+ + W LLR++ W GDFN+ + E R
Sbjct: 827 EPQWHVTFVYGEPRVENRHRMWSLLRTIHQSSSLPWAVIGDFNETMWQFEHFSRTPRGEP 886
Query: 165 QLSLSRNAVEDCNLLDLGFNGYPFTWSNGRHGSGRI*CRLDRVFASDEFIKRFSPIQINH 224
Q+ R+ ++DC L DLGF G P T+ N R G + RLDRV A D++ +S Q+ H
Sbjct: 887 QMQDFRDVLQDCELHDLGFKGVPHTYDNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVH 946
Query: 225 LARFGSDHAAISIELDVCLEDAHKKKLHVFRFEKCWADDDRCEAMVRGSW---NNATGLA 281
L SDH I + L V +D H+ + +E W + ++ +W L
Sbjct: 947 LVSPCSDHCPILLNLVV--KDPHQLRQKCLHYEIVWEREPEATQVIEEAWVVAGEKADLG 1004
Query: 282 SKIEAMQSLDSKFKEYITSEIRKELLEIETQLNNHASWDGSPDNITKFRELEAKHSELLQ 341
+A+ + + + + ++++ E+E A S + T R +ELL
Sbjct: 1005 DINKALAKVMTALRSWSRAKVKNVGRELEKARKKLAELIESNADRTVIRNATDHMNELLY 1064
Query: 342 TEETMWRQRSRATWLKEGDKNSKFFHAKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLV 401
EE +W QRSR WLK+ D+N+KFFH++A R K N I K++D + K+E +
Sbjct: 1065 REEMLWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMAT 1124
Query: 402 DYFAGLFTSS---NPTTVDQTCLVVKDRLSPEHVEWCNRSFSPAEIKDAIDQMHPLKAPG 458
+YF ++T+ NP TV + +++++++ E F+ EI AI Q+ PLK+PG
Sbjct: 1125 EYFQDVYTADPNLNPETVTR---LIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPG 1181
Query: 459 PDGLPALFFQKYWYIVGSEVVSLALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRPI 518
PDG PA F+Q+ W + ++++ G E +N T I LIPK + P FRPI
Sbjct: 1182 PDGFPARFYQRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPI 1241
Query: 519 SLCNVVMKIVTKTIANRLKPILPEIMDEEQSAFVQGRLITDNAIIAMECFHWMKKKTKGK 578
SLCNVV K+V+K + NRL+PIL +++ EQSAFVQGR+ITDNA++A ECFH M+K K
Sbjct: 1242 SLCNVVYKVVSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKAN 1301
Query: 579 KGVMAMKLDMAKAYDRIEWSFVKSMLQSMNFPENIINTILQCISTVSYQILINGQPSRRF 638
A KLD++KAYDR++W F++ + + F +N I++C+++V Y + NG + F
Sbjct: 1302 HAACAYKLDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSF 1361
Query: 639 FPERGLRQGDPLSPYLFILCANVLSGLLKKEEKDNKIHGIRIARNAPKITHLLFADDGLL 698
P RGLRQGDPL P+LF+ A+ LS LLK++ N + ++ R AP I+HLLFADD LL
Sbjct: 1362 APTRGLRQGDPLLPFLFLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLL 1421
Query: 699 FARASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVLNHDKEIICQRINIKTVNTH 758
F +A EA+ + VL++Y +GQ++N K + E I + + ++
Sbjct: 1422 FFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFE 1481
Query: 759 SRYLGLPVIFGRSKKEVFSFVQERVWKKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSC 818
RYLG P GR K F +Q ++WK++ W E LS GKE LIKAV QAIP Y+M
Sbjct: 1482 DRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGI 1541
Query: 819 YKLPEGCCDAVEGMLAKFWWASDEYKRKIHWMRWGRLGETKKRGGLGFRSFSDFNKALLG 878
+KLPE D + + FWW S +RK HW W L + K GGLGFR + FN+ALL
Sbjct: 1542 FKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLA 1601
Query: 879 KQYWRLLADNNSLMSSILKSRYFPRTSISITKVGFQPRYAWRSLMKARELVENDAHWVIG 938
+Q WRL+ +SL + +LK++YFP S+ T G AWRS+ +L++ W +G
Sbjct: 1602 RQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVG 1661
Query: 939 NGRTVRIFKDNWIPGTRC-TPIQRTEGTVDEDAVVADLIVHETRSWDRERIMASFNSFIA 997
NG ++RI++D+W+P PI T V+DLI E SWD +I F++ A
Sbjct: 1662 NGNSIRIWRDSWLPRDHSRRPI--TGKANCRLKWVSDLIT-EDGSWDVPKIHQYFHNLDA 1718
Query: 998 KKILSIPISFRLPDDKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRG-SDIWKQI 1056
+ IL+I IS R +D + W +K+G +SVRS + L + + E + SS + W+ I
Sbjct: 1719 EVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMI 1778
Query: 1057 WNFNGPRSAQNFLWRLASNILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKA 1116
W P+ + F WR+ASN L T N K+ + C +C+ ED H C A
Sbjct: 1779 WKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQ 1838
Query: 1117 VWF----SSPLGIHIPPNSMCREWMELWLKKDDPLAVQVFGITLWRLWQGRNQLIF-KNS 1171
+W S + + I + + R W+ L+K +F +TLWR W RN+LI K++
Sbjct: 1839 LWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSA 1898
Query: 1172 PFDPALIAQSAVLLVEEFNLANRKA-------ACHPISRAPTR--------------WCP 1210
P P +Q + + R+A H + P + W
Sbjct: 1899 P--PTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVRTVPLKGGPKYRVLNNHQPCWER 1956
Query: 1211 PQTGTVKINVDAGV-FTDGSTGWGFVARDHHGAVLFSATRKEEMMVTPLVAE-------- 1261
P+ G +K+NVD + G G G + R+ G ++F++ + E PL +E
Sbjct: 1957 PKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERCNNPLESELRACVEGL 2016
Query: 1262 RLALRWCLSWAEGEQFTSLCIETDAEQVVHCL 1293
+LA+ W L + +ETD VV L
Sbjct: 2017 KLAIHWTL--------LPIQVETDCASVVQLL 2040
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 719 bits (1855), Expect = 0.0
Identities = 401/1129 (35%), Positives = 604/1129 (52%), Gaps = 14/1129 (1%)
Query: 4 MKLLSWNCRGLGNPRAIRALLRLIRIQNPQVVFLMETRLKSDEMERVRINCGFSSGLFVP 63
M L+WNCRGLGN ++ L LI+ Q+VFL ETR ++M R+R F + V
Sbjct: 636 MSCLAWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKLAFRGFVGVS 695
Query: 64 CDGFGKERACDIALLWMDSVNLSIRSYSLNHIMGRIEDVESGKYWSITGIYGYPDETNKK 123
+G ++ +AL W +SV++ ++ + +I + W IT +YG P N+
Sbjct: 696 SEG----KSGGLALYWDESVSVDVKDINKRYIDAYVRLSPDEPQWHITFVYGEPRVENRH 751
Query: 124 KTWDLLRSLTPVEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLDLGF 183
+ W LLR++ W+ GDFN+ L E N R Q+ R+A+ DC+L DLGF
Sbjct: 752 RMWSLLRTIRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNFRDALYDCDLQDLGF 811
Query: 184 NGYPFTWSNGRHGSGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSDHAAISIELDVCL 243
G P T+ N R G + RLDR A D++ F Q++HL SDH+ I +E V
Sbjct: 812 KGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSPILLEFIV-- 869
Query: 244 EDAHKKKLHVFRFEKCWADDDRCEAMVRGSWNNA---TGLASKIEAMQSLDSKFKEYITS 300
+D + + +E W + ++ +W NA T L A+ + S + + +
Sbjct: 870 KDTTRPRQKCLHYEIVWEREPESVQVIEEAWINAGVKTDLGDINIALGRVMSALRSWSKT 929
Query: 301 EIRKELLEIETQLNNHASWDGSPDNITKFRELEAKHSELLQTEETMWRQRSRATWLKEGD 360
+++ E+E S + R+ +E+L EE +W QRSR WLKEGD
Sbjct: 930 KVKNVGKELEKARKKLEDLIASNAARSSIRQATDHMNEMLYREEMLWLQRSRVNWLKEGD 989
Query: 361 KNSKFFHAKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPTTVDQTC 420
+N++FFH++A R K N I K++D+ G + +E + +YF G++ + +
Sbjct: 990 RNTRFFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVYKADPSLNPESVT 1049
Query: 421 LVVKDRLSPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVS 480
+ +++++ E + F EI AI Q+ PLK+P PDG PA F+Q+ W + S+++
Sbjct: 1050 RLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTLKSDIIL 1109
Query: 481 LALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPIL 540
G + +N T I LIPK P +RPISLCNVV K+V+K + NRL+PIL
Sbjct: 1110 AVRNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPIL 1169
Query: 541 PEIMDEEQSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFV 600
+++ +EQSAF+QGR+ITDNA++A ECFH ++K K A KLD++KAYDR++W F+
Sbjct: 1170 DDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFL 1229
Query: 601 KSMLQSMNFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCAN 660
+ L + F ++ I+ C++TV Y + NG R F P RGLRQG+PLSP+LF+ A+
Sbjct: 1230 ELALNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVAD 1289
Query: 661 VLSGLLKKEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDA 720
LS LLK++ N + ++I R AP I++LLFADD LLF +A +EA+ + VL Y
Sbjct: 1290 GLSLLLKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQG 1349
Query: 721 SGQIVNLDKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQ 780
+GQ++N K + + + E I + ++ N RYLG P GR K F +Q
Sbjct: 1350 TGQLINPAKCSILFGEASPSSVSEDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQ 1409
Query: 781 ERVWKKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWAS 840
++ K++ W E LS GKE LIKAV QAIP Y+M +K P+ D + M FWW +
Sbjct: 1410 AKIAKRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWWGA 1469
Query: 841 DEYKRKIHWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSILKSRY 900
D +R+ HW W L + K GGLGFR + FN+ALL +Q WRL+ NSL + +LK++Y
Sbjct: 1470 DNGRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKAKY 1529
Query: 901 FPRTSISITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWIP-GTRCTPI 959
FP S++ T W + +L++ W IGNG +VRI++D WIP P+
Sbjct: 1530 FPHGSLTDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSVRIWRDPWIPRDLSRRPV 1589
Query: 960 QRTEGTVDEDAVVADLIVHETRSWDRERIMASFNSFIAKKILSIPISFRLPDDKVTWQWE 1019
V+DLI E +WD +I F A I I IS RL +D + W +
Sbjct: 1590 SSKANC--RLKWVSDLIA-EDGTWDSAKINQYFLKIDADIIQKICISARLEEDFIAWHPD 1646
Query: 1020 KSGEYSVRSGHHLLCE-NKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLWRLASNILP 1078
K+G +SVRS + L + + SSS R + W+ IW N P+ + F WR+ASN L
Sbjct: 1647 KTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWELIWKCNVPQKVRIFAWRVASNSLA 1706
Query: 1079 TRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGIHI 1127
T N K+ + C +C+ ED H C A ++W + G ++
Sbjct: 1707 TMENKKKRNLERFDVCGICDREKEDAGHALCRCVHANSLWVNLEKGKYV 1755
Score = 42.7 bits (99), Expect = 0.084
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 21/176 (11%)
Query: 1186 VEEFNLANRKAACHPISRAPTRWCPPQTGTVKINVDAGVFTDGST--GWGFVARDHHGAV 1243
V N A H RW P+ G +K+NVD G F S G G + R+ G V
Sbjct: 1755 VVSVNFPKTTAIKHTPGAENRRWERPRNGWMKLNVD-GSFDINSEKGGIGMILRNCLGNV 1813
Query: 1244 LFSATRKEEMMVTPLVAE--------RLALRWCLSWAEGEQFTSLCIETDAEQVVHCLLR 1295
+FS+ R + PL AE LAL W L + +ETD V+ L
Sbjct: 1814 IFSSCRSLDSCSGPLEAELHACVEGLHLALHWTL--------LPIQVETDCSSVIQLLNH 1865
Query: 1296 -RKKIAAIEFLILDCLDYLSRFSTCSVNFAGRSCNQVAHSLVGLAKTVG-NICWVG 1349
K + + + + ++ +++ RS N ++H L A+ + W+G
Sbjct: 1866 PDKDRSVLANIAQEAKSLMAGDRQIAISKVQRSQNVISHFLANKARAESLSSFWLG 1921
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 702 bits (1813), Expect = 0.0
Identities = 444/1381 (32%), Positives = 702/1381 (50%), Gaps = 54/1381 (3%)
Query: 13 GLGNPRAIRALLRLIRIQNPQVVFLMETRLKSDEMERVRINCGFSSGLFVPCDGFGKERA 72
G+G P L RL R+ N ++FL+ET + D++ ++ + GF + + P +G R+
Sbjct: 391 GIGMPLTQSRLFRLFRMYNYDILFLVETLNQCDKVCKLAYDLGFPNVITQPPNG----RS 446
Query: 73 CDIALLWMDSVNLSIRSYSLNHIMGRIEDVESGKYWSITGIYGYPDETNKKKTWDLLRSL 132
+AL+W ++V+LS+ S I + + K + ++ +YG+P ++ + + W L +
Sbjct: 447 GGLALMWKNNVSLSLISQDERLIDSHV--TFNNKSFYLSCVYGHPTQSERHQLWQTLEHI 504
Query: 133 TPVEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLDLGFNGYPFTWSN 192
+ WL GDFN+ILSN EK GG +R RN V C++ D+ G F+W
Sbjct: 505 SDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVG 564
Query: 193 GRHGSGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSDHAAISIELDVCLEDAHKKKLH 252
RH + + C LDRVF + + F +I L GSDH + + + ++ ++
Sbjct: 565 ERH-THTVKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFN----ESFPRRSK 619
Query: 253 VFRFEKCWADDDRCEAMVRGSW-----NNATGLASKIEAMQSLDSKFKEYITSEIRKELL 307
+FRF+ D + +V+ SW + +T + +I + + ++ K + +
Sbjct: 620 LFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIK 679
Query: 308 EIETQLNNHASWDGSPDNITKFRELEAKHSELLQTEETMWRQRSRATWLKEGDKNSKFFH 367
++++ LN D +L+ ++ EE W+Q+SR W+KEGD+N+ +FH
Sbjct: 680 KLQSSLNRAMESTRRVDR-QLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFH 738
Query: 368 AKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDRL 427
A K R N + I DD+G + G ++ D+F +F+++ K +
Sbjct: 739 ACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTV 798
Query: 428 SPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILN 487
+ + FS EI DAI Q+ KAPGPDGL A F++ W IVG +V+
Sbjct: 799 TNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFE 858
Query: 488 EGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEE 547
IN T I +IPK NP++ + +RPI+LCNV+ K+++K + NRLK L I+ +
Sbjct: 859 TSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDS 918
Query: 548 QSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSM 607
Q+AF+ GR+I DN +IA E H +K + + K MA+K D++KAYDR+EW F+++ ++
Sbjct: 919 QAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLF 978
Query: 608 NFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLK 667
F I I+ + +V Y +LING P P RG+RQGDPLSPYLFILC ++LS L+
Sbjct: 979 GFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLIN 1038
Query: 668 KEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNL 727
+ G+RI AP ITHL FADD L F +A+V Q + V + Y+ SGQ +N+
Sbjct: 1039 GRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINV 1098
Query: 728 DKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKI 787
KS +++ V + + Q + I +YLGLP FGR KKE+F ++ +RV K+
Sbjct: 1099 QKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRT 1158
Query: 788 KGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKI 847
W + LS AGKE ++K+VA A+P Y MSC+KLP+G +E +L FWW +R I
Sbjct: 1159 STWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGI 1218
Query: 848 HWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSILKSRYFPRTSIS 907
W+ W RL +KK GGLGFR + FN ALL KQ WRL+ NSL + ++K+RYF SI
Sbjct: 1219 PWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSIL 1278
Query: 908 ITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWIPGTRCTPIQRTEGTVD 967
KV Q Y W SL+ L++ +IG+G+ +RI DN + P+ TE T
Sbjct: 1279 DAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPL-NTEETYK 1337
Query: 968 EDAVVADLIVHETR--SWDRERIMASFNSFIAKKILSIPISFRLPDDKVTWQWEKSGEYS 1025
E + +L + WD +I + I I ++ DK+ W + +GEY+
Sbjct: 1338 E-MTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYT 1396
Query: 1026 VRSGHHLLCENKSKEVAESSSVRGS-DIWKQIWNFNGPRSAQNFLWRLASNILPTRCNLS 1084
VRSG+ LL + S + + GS D+ +IWN ++FLWR S L T L+
Sbjct: 1397 VRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLT 1456
Query: 1085 KKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGIHIPPNSMCREWME-----L 1139
+G+ +D SCP C+ E +NH CP A W S + I M ++ E L
Sbjct: 1457 TRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSL-IRNQLMSNDFEENISNIL 1515
Query: 1140 WLKKDDPLA-----VQVFGITLWRLWQGRNQLIFKNSPFDPALIAQSAVLLVEEFNLANR 1194
+D ++ + V+ +WR+W+ RN ++F P+ SA ++ A +
Sbjct: 1516 NFVQDTTMSDFHKLLPVW--LIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQ 1573
Query: 1195 KAACHPISRAPTR--------WCPPQTGTVKINVDAG--VFTDGSTGWGFVARDHHGAVL 1244
H + +PTR W P VK N DAG V +TG G++ R+H+G +
Sbjct: 1574 S---HKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATG-GWIIRNHYGTPI 1629
Query: 1245 FSATRKEEMMVTPLVAERLALRWCL--SWAEGEQFTSLCIETDAEQVVHCLLRRKKIAAI 1302
+ K PL AE AL L +W G +T + +E D + +++ + +++
Sbjct: 1630 SWGSMKLAHTSNPLEAETKALLAALQQTWIRG--YTQVFMEGDCQTLINLINGISFHSSL 1687
Query: 1303 EFLILDCLDYLSRFSTCSVNFAGRSCNQVAHSLVGLAKTVGNI-CWVGSVPQQIYPSLCK 1361
+ D + ++F++ F + N++AH L T GS+P + C
Sbjct: 1688 ANHLEDISFWANKFASIQFGFIRKKGNKLAHVLAKYGCTYSTFYSDSGSLPIWLDRYFCN 1747
Query: 1362 D 1362
D
Sbjct: 1748 D 1748
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 690 bits (1781), Expect = 0.0
Identities = 418/1311 (31%), Positives = 666/1311 (49%), Gaps = 46/1311 (3%)
Query: 6 LLSWNCRGLGNPRAIRALLRLIRIQNPQVVFLMETRLKSDEMERVRINCGFSSGLFVPCD 65
++SWNC+GL NP IR L + + P ++FLMET+ D + +V G+ V +
Sbjct: 2 VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPE 61
Query: 66 GFGKERACDIALLWMDSVNLSIRSYSLNHIMGRIEDVESGKYWSITGIYGYPDETNKKKT 125
G R+ +A+ W + + Y+ ++M ++ K W I+ +YG P + K
Sbjct: 62 G----RSGGLAIFWKSHLEIEFL-YADKNLMD-LQVSSRNKVWFISCVYGLPVTHMRPKL 115
Query: 126 WDLLRSLTPVEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLDLGFNG 185
W+ L S+ + W GDFNDI SN+EK GG RS + + +C++ +LG G
Sbjct: 116 WEHLNSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTG 175
Query: 186 YPFTWSNGRHGSGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSDHAAISIELDVCLED 245
FTW R+ + C+LDR F + + F L +FGSDH + ++ +
Sbjct: 176 NSFTWGGNRNDQW-VQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFT----N 230
Query: 246 AHKKKLHVFRFEKCWADDDRCEAMVRGSWNNA------TGLASKIEAMQSLDSKFKEYIT 299
++ FR++K DD C ++ SWN+A + S IE +++ S +K
Sbjct: 231 DNELFRGQFRYDKRLDDDPYCIEVIHRSWNSAMSQGTHSSFFSLIECRRAI-SVWKHSSD 289
Query: 300 SEIRKELLEIETQLNNHAS-----WDGSPDNITKFRELEAKHSELLQTEETMWRQRSRAT 354
+ + + + L+ S W + ++ + S EE WRQ+SR
Sbjct: 290 TNAQSRIKRLRKDLDAEKSIQIPCWP-------RIEYIKDQLSLAYGDEELFWRQKSRQK 342
Query: 355 WLKEGDKNSKFFHAKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPT 414
WL GDKN+ FFHA N + + D+ + K+ +F LFTS+
Sbjct: 343 WLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYIL 402
Query: 415 TVDQTCLVVKDRLSPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIV 474
T + ++ +++ E + + E+ +A+ ++ APGPDG ALFFQ++W +V
Sbjct: 403 THNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLV 462
Query: 475 GSEVVSLALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIAN 534
++++ G G + N T I LIPK +P + RPISLC+V+ KI++K +
Sbjct: 463 KHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQ 522
Query: 535 RLKPILPEIMDEEQSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDR 594
RLK LP I+ QSAFV RLI+DN ++A E H ++ + K MA K DM+KAYDR
Sbjct: 523 RLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDR 582
Query: 595 IEWSFVKSMLQSMNFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYL 654
+EW F+++M+ ++ F I+ I+ C+++VSY +LINGQP P RG+RQGDPLSP L
Sbjct: 583 VEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPAL 642
Query: 655 FILCANVLSGLLKKEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISVL 714
F+LC L +L K E+ KI GI+ + HLLFADD LL +A+ +E + ++ L
Sbjct: 643 FVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCL 702
Query: 715 NTYQDASGQIVNLDKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKE 774
+ Y SGQ++NL+KS +++ +NV K+ I R I +YLGLP SK++
Sbjct: 703 SQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRD 762
Query: 775 VFSFVQERVWKKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLA 834
+F F++E++ ++ GW K LS+ GKE L+K++A A+P Y+MSC+KLP+ C + ++
Sbjct: 763 LFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMM 822
Query: 835 KFWWASDEYKRKIHWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSS 894
FWW S + KRKIHW+ W RL K +GG GF+ FN+ALL KQ WR+L + SL S
Sbjct: 823 DFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSR 882
Query: 895 ILKSRYFPRTSISITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWI-PG 953
+ +SRYF + G +P YAWRS++ REL+ VIGNG+ ++ D W+ G
Sbjct: 883 VFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDG 942
Query: 954 TRCTPIQRTEGTVDEDAVVADLIVHETRSWDRERIMASFNSFIAKKIL-SIPISFRLPDD 1012
+ P+ R ++ D V+ LI +R+W+ + F + IL P+ F+ +D
Sbjct: 943 SNRRPLNRRR-FINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLFFK--ED 999
Query: 1013 KVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGS--DIWKQIWNFNGPRSAQNFLW 1070
W +G YSV++G+ L + + + + V+ S ++ +IWN + + FLW
Sbjct: 1000 SFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLW 1059
Query: 1071 RLASNILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLG------ 1124
+ +P L +GI D C +C++ E +NH+ CP A+ VW + L
Sbjct: 1060 KALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEF 1119
Query: 1125 IHIPPNSMCREWMELWLKKDDPLAVQ-VFGITLWRLWQGRNQLIFKNSPFDPALIAQSAV 1183
+ +M R ++L + D P ++ V LW LW+ RN L+F+ + A
Sbjct: 1120 SNSVYTNMSR-LIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAY 1178
Query: 1184 LLVEEFNLANRKAACHPISRAPTRWCPPQTGTVKINVD-AGVFTDGSTGWGFVARDHHGA 1242
E+ A T+WCPP G +K N+ A +G +V RD G
Sbjct: 1179 EAYHEWFSAQTHMQNDEKHLKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGK 1238
Query: 1243 VLFSATRKEEMMVTPLVAERLALRWCLSWAEGEQFTSLCIETDAEQVVHCL 1293
VL + R + +P A+ + W L F + + +++ L
Sbjct: 1239 VLLHSRRSFNEVHSPYSAKIRSWEWALESMTHHHFDRVIFASSTHEIIQAL 1289
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 684 bits (1765), Expect = 0.0
Identities = 433/1356 (31%), Positives = 687/1356 (49%), Gaps = 54/1356 (3%)
Query: 38 METRLKSDEMERVRINCGFSSGLFVPCDGFGKERACDIALLWMDSVNLSIRSYSLNHIMG 97
+ET + D++ ++ + GF + + P +G R+ +AL+W ++V+LS+ S I
Sbjct: 190 LETLNQCDKVCKLAYDLGFPNVITQPPNG----RSGGLALMWKNNVSLSLISQDERLIDS 245
Query: 98 RIEDVESGKYWSITGIYGYPDETNKKKTWDLLRSLTPVEEDMWLCCGDFNDILSNEEKAG 157
+ + K + ++ +YG+P ++ + + W L ++ WL GDFN+ILSN EK G
Sbjct: 246 HV--TFNNKSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIG 303
Query: 158 GNIRSFLQLSLSRNAVEDCNLLDLGFNGYPFTWSNGRHGSGRI*CRLDRVFASDEFIKRF 217
G +R RN V C++ D+ G F+W RH + + C LDRVF + + F
Sbjct: 304 GPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERH-THTVKCCLDRVFINSAWTATF 362
Query: 218 SPIQINHLARFGSDHAAISIELDVCLEDAHKKKLHVFRFEKCWADDDRCEAMVRGSW--- 274
+ L GSDH + + + ++ ++ +FRF+ D + +V+ SW
Sbjct: 363 PYAETEFLDFTGSDHKPVLVHFN----ESFPRRSKLFRFDNRLIDIPTFKRIVQTSWRTN 418
Query: 275 --NNATGLASKIEAMQSLDSKFKEYITSEIRKELLEIETQLNNHASWDGSPDNITKFREL 332
+ +T + +I + + ++ K + + ++++ LN D +L
Sbjct: 419 RNSRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDR-QLIPQL 477
Query: 333 EAKHSELLQTEETMWRQRSRATWLKEGDKNSKFFHAKAKQRGKINSIKKIKDDRGVWWNG 392
+ ++ EE W+Q+SR W+KEGD+N+ +FHA K R N + I DD+G + G
Sbjct: 478 QESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTG 537
Query: 393 RDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDRLSPEHVEWCNRSFSPAEIKDAIDQMH 452
++ D+F +F+++ K ++ + FS EI DAI Q+
Sbjct: 538 DKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIG 597
Query: 453 PLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILNEGKSTECINKTFIALIPKCKNPSSP 512
KAPGPDGL A F++ W IVG +V+ IN T I +IPK NP++
Sbjct: 598 DDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTL 657
Query: 513 NQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEEQSAFVQGRLITDNAIIAMECFHWMK 572
+ +RPI+LCNV+ K+++K + NRLK L I+ + Q+AF+ GR+I DN +IA E H +K
Sbjct: 658 SDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLK 717
Query: 573 KKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSMNFPENIINTILQCISTVSYQILING 632
+ + K MA+K D++KAYDR+EW F+++ ++ F I I+ + +V Y +LING
Sbjct: 718 VRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLING 777
Query: 633 QPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLKKEEKDNKIHGIRIARNAPKITHLLF 692
P P RG+RQGDPLSPYLFILC ++LS L+ + G+RI AP ITHL F
Sbjct: 778 SPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQF 837
Query: 693 ADDGLLFARASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVLNHDKEIICQRINI 752
ADD L F +A+V Q + V + Y+ SGQ +N+ KS +++ V + + Q + I
Sbjct: 838 ADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEI 897
Query: 753 KTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKIKGWKEKCLSRAGKETLIKAVAQAIP 812
+YLGLP FGR KKE+F ++ +RV K+ W + LS AGKE ++K+VA A+P
Sbjct: 898 PNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMP 957
Query: 813 NYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKIHWMRWGRLGETKKRGGLGFRSFSDF 872
Y MSC+KLP+G +E +L FWW +R I W+ W RL +KK GGLGFR + F
Sbjct: 958 VYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKF 1017
Query: 873 NKALLGKQYWRLLADNNSLMSSILKSRYFPRTSISITKVGFQPRYAWRSLMKARELVEND 932
N ALL KQ WRL+ NSL + ++K+RYF SI KV Q Y W SL+ L++
Sbjct: 1018 NDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKG 1077
Query: 933 AHWVIGNGRTVRIFKDNWIPGTRCTPIQRTEGTVDEDAVVADLIVHETR--SWDRERIMA 990
+IG+G+ +RI DN + P+ TE T E + +L + WD +I
Sbjct: 1078 TRHLIGDGQNIRIGLDNIVDSHPPRPL-NTEETYKE-MTINNLFERKGSYYFWDDSKISQ 1135
Query: 991 SFNSFIAKKILSIPISFRLPDDKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGS 1050
+ I I ++ DK+ W + +GEY+VRSG+ LL + S + + GS
Sbjct: 1136 FVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGS 1195
Query: 1051 -DIWKQIWNFNGPRSAQNFLWRLASNILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFL 1109
D+ +IWN ++FLWR S L T L+ +G+ +D CP C+ E +NH
Sbjct: 1196 IDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALF 1255
Query: 1110 HCPAAKAVWFSSPLGIHIPPNSMCREWME-----LWLKKDDPLA-----VQVFGITLWRL 1159
CP A W+ S + I M ++ E L +D ++ + V+ +WR+
Sbjct: 1256 TCPFATMAWWLSDSSL-IRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVW--LIWRI 1312
Query: 1160 WQGRNQLIFKNSPFDPALIAQSAVLLVEEFNLANRKAACHPISRAPTR--------WCPP 1211
W+ RN ++F P+ SA ++ A + H + +PTR W P
Sbjct: 1313 WKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQS---HKKTPSPTRQIAENKIEWRNP 1369
Query: 1212 QTGTVKINVDAG--VFTDGSTGWGFVARDHHGAVLFSATRKEEMMVTPLVAERLALRWCL 1269
VK N DAG V +TG G++ R+H+G + + K PL AE AL L
Sbjct: 1370 PATYVKCNFDAGFDVQKLEATG-GWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAAL 1428
Query: 1270 --SWAEGEQFTSLCIETDAEQVVHCLLRRKKIAAIEFLILDCLDYLSRFSTCSVNFAGRS 1327
+W G +T + +E D + +++ + +++ + D + ++F++ F R
Sbjct: 1429 QQTWIRG--YTQVFMEGDCQTLINLINGISFHSSLANHLEDISFWANKFASIQFGFIRRK 1486
Query: 1328 CNQVAHSLVGLAKTVGNI-CWVGSVPQQIYPSLCKD 1362
N++AH L T GS+P + C D
Sbjct: 1487 GNKLAHVLAKYGCTYSTFYSGSGSLPIWLDRYFCND 1522
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 676 bits (1744), Expect = 0.0
Identities = 389/1129 (34%), Positives = 596/1129 (52%), Gaps = 43/1129 (3%)
Query: 254 FRFEKCWADDDRCEAMVRGSWNNATGL-----ASKIEAMQSLDSKFKEYITSEIRKELLE 308
FRF+K W D + WN +G K+ + SK+++ + R+ + +
Sbjct: 24 FRFDKRWIGKDGLLEAISQGWNLDSGFREGQFVEKLTNCRRAISKWRKSLIPFGRQTIED 83
Query: 309 IETQLN-NHASWDGSPDNITKFRELEAKHSELLQTEETMWRQRSRATWLKEGDKNSKFFH 367
++ +L+ D S + IT EL + E + EE W Q+SR+ W+K GD NSKFFH
Sbjct: 84 LKAELDVAQRDDDRSREEIT---ELTLRLKEAYRDEEQYWYQKSRSLWMKLGDNNSKFFH 140
Query: 368 AKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDRL 427
A KQR N I + D+ G+W D ++ + V YF LFT++NP D+ V+ +
Sbjct: 141 ALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNLFTTANPQVFDEALGEVQVLI 200
Query: 428 SPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILN 487
+ + + E++ A+ +HP KAPGPDG+ ALFFQK W I+ S+++SL L
Sbjct: 201 TDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQ 260
Query: 488 EGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEE 547
EG + +N T I LIPK + P+ + RPISLCNV K+++K + RLK +LP ++ E
Sbjct: 261 EGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISET 320
Query: 548 QSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSM 607
QSAFV GRLI+DN +IA E FH ++ + K MA+K DM+KAYD++EW+F++++L+ M
Sbjct: 321 QSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKM 380
Query: 608 NFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLK 667
F E I+ I+ CI+TV Y++LINGQP PERGLRQGDPLSPYLFILC VL ++
Sbjct: 381 GFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIR 440
Query: 668 KEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNL 727
K E+ N I GI++A +P ++HLLFADD L F +A+ E+ I+ +L Y+ SGQ +N
Sbjct: 441 KAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINF 500
Query: 728 DKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKI 787
KS + + V + K I + I + YLGLP G SK +VFSFV++R+ +I
Sbjct: 501 SKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRI 560
Query: 788 KGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKI 847
GW K LS+ GKE +IK+VA +P Y+MSC++LP+ + +AKFWW+S+ R +
Sbjct: 561 NGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGM 620
Query: 848 HWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSILKSRYFPRTSIS 907
HWM W +L +K GGLGFR+ DFN ALL KQ WRL+ +SL + + K RYF +++
Sbjct: 621 HWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPL 680
Query: 908 ITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWIPGTRCTPIQRTEGTVD 967
+ + P Y WRS++ AR LV +G+G ++ ++ D WIP P + VD
Sbjct: 681 DSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVD 740
Query: 968 EDAVVADLIVHETRSWDRERIMASFNSFIAKKILSIPISFRLPDDKVTWQWEKSGEYSVR 1027
V LI + W+ + + F+ I ++PI +D + W + K+G Y+V+
Sbjct: 741 PSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVK 800
Query: 1028 SGHHLLCENKSKEVAESSSVRGSDIW---KQIWNFNGPRSAQNFLWRLASNILPTRCNLS 1084
SG+H ++ E +++ G D+ IW P ++FLW++ S +P NL
Sbjct: 801 SGYH----TARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLR 856
Query: 1085 KKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPL----GIHIPPNSMCREWMELW 1140
K+GI D+ C C + E +NH C A+ +W S + GI P NS+ L+
Sbjct: 857 KRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGI-FPSNSIFTNLDHLF 915
Query: 1141 LKKDDPLAVQVFGITLWRLWQGRNQLIFKNSPFDPALIAQSAVLLVEEFNLA------NR 1194
+ + + +W +W+ RN+ +F+N DP I AV + + A R
Sbjct: 916 WRIPSGVDSAPYPWIIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQEAQVELHSER 975
Query: 1195 KAACHPISRAPTRWCPPQTGTVKINVDAGVFTDGS---------TGWGFVARDHHGAVLF 1245
+ SR R T F DGS TGW ++ +
Sbjct: 976 HGSLSIDSRIRVRDVSQDTTFSGFR----CFIDGSWKASDQFSGTGWFCLSSLGESPTMG 1031
Query: 1246 SATRKEEMMVTPLVAERLALRWCLSWAEGEQFTSLCIETDAEQVVHCLLRRKKIAAIEFL 1305
+A + + +PL E AL W + G ++ TD +V + + A
Sbjct: 1032 AANVRRSL--SPLHTEMEALLWAMKCMIGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVY 1089
Query: 1306 ILDCLDYLSRFSTCSVNFAGRSCNQVAHSLVGLAKTV-GNICWVGSVPQ 1353
+ + F+ S++ RS N A L +TV ++ +V ++P+
Sbjct: 1090 LEELQSDREEFTNFSLSLISRSANVKADKLARKIRTVPHHVTYVNNIPR 1138
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 669 bits (1725), Expect = 0.0
Identities = 407/1285 (31%), Positives = 650/1285 (49%), Gaps = 46/1285 (3%)
Query: 32 PQVVFLMETRLKSDEMERVRINCGFSSGLFVPCDGFGKERACDIALLWMDSVNLSIRSYS 91
P ++FLMET+ D + +V G+ V +G R+ +A+ W + + Y+
Sbjct: 7 PDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPEG----RSGGLAIFWKSHLEIEFL-YA 61
Query: 92 LNHIMGRIEDVESGKYWSITGIYGYPDETNKKKTWDLLRSLTPVEEDMWLCCGDFNDILS 151
++M ++ K W I+ +YG P + K W+ L S+ + W GDFNDI S
Sbjct: 62 DKNLMD-LQVSSRNKVWFISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRS 120
Query: 152 NEEKAGGNIRSFLQLSLSRNAVEDCNLLDLGFNGYPFTWSNGRHGSGRI*CRLDRVFASD 211
N+EK GG RS + + +C++ +LG G FTW R+ + C+LDR F +
Sbjct: 121 NDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRNDQW-VQCKLDRCFGNP 179
Query: 212 EFIKRFSPIQINHLARFGSDHAAISIELDVCLEDAHKKKLHVFRFEKCWADDDRCEAMVR 271
+ F L +FGSDH + ++ + ++ FR++K DD C ++
Sbjct: 180 AWFSIFPNAHQWFLEKFGSDHRPVLVKFT----NDNELFRGQFRYDKRLDDDPYCIEVIH 235
Query: 272 GSWNNA------TGLASKIEAMQSLDSKFKEYITSEIRKELLEIETQLNNHAS-----WD 320
SWN+A + S IE +++ S +K + + + + L+ S W
Sbjct: 236 RSWNSAMSQGTHSSFFSLIECRRAI-SVWKHSSDTNAQSRIKRLRKDLDAEKSIQIPCWP 294
Query: 321 GSPDNITKFRELEAKHSELLQTEETMWRQRSRATWLKEGDKNSKFFHAKAKQRGKINSIK 380
+ ++ + S EE WRQ+SR WL GDKN+ FFHA N +
Sbjct: 295 -------RIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELS 347
Query: 381 KIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDRLSPEHVEWCNRSFS 440
+ D+ + K+ +F LFTS+ T + ++ +++ E + +
Sbjct: 348 FLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVT 407
Query: 441 PAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILNEGKSTECINKTFI 500
E+ +A+ ++ APGPDG ALFFQ++W +V ++++ G G + N T I
Sbjct: 408 ELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHI 467
Query: 501 ALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEEQSAFVQGRLITDN 560
LIPK +P + RPISLC+V+ KI++K + RLK LP I+ QSAFV RLI+DN
Sbjct: 468 CLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDN 527
Query: 561 AIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSMNFPENIINTILQC 620
++A E H ++ + K MA K DM+KAYDR+EW F+++M+ ++ F I+ I+ C
Sbjct: 528 ILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNC 587
Query: 621 ISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLKKEEKDNKIHGIRI 680
+++VSY +LINGQP P RG+RQGDPLSP LF+LC L +L K E+ KI GI+
Sbjct: 588 VTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQF 647
Query: 681 ARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVLN 740
+ HLLFADD LL +A+ +E + ++ L+ Y SGQ++NL+KS +++ +NV
Sbjct: 648 QDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDI 707
Query: 741 HDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKIKGWKEKCLSRAGK 800
K+ I R I +YLGLP SK+++F F++E++ ++ GW K LS+ GK
Sbjct: 708 QIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGK 767
Query: 801 ETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKIHWMRWGRLGETKK 860
E L+K++A A+P Y+MSC+KLP+ C + ++ FWW S + KRKIHW+ W RL K
Sbjct: 768 EVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKD 827
Query: 861 RGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSILKSRYFPRTSISITKVGFQPRYAWR 920
+GG GF+ FN+ALL KQ WR+L + SL S + +SRYF + G +P YAWR
Sbjct: 828 QGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWR 887
Query: 921 SLMKARELVENDAHWVIGNGRTVRIFKDNWI-PGTRCTPIQRTEGTVDEDAVVADLIVHE 979
S++ REL+ VIGNG+ ++ D W+ G+ P+ R ++ D V+ LI
Sbjct: 888 SILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRR-FINVDLKVSQLIDPT 946
Query: 980 TRSWDRERIMASFNSFIAKKIL-SIPISFRLPDDKVTWQWEKSGEYSVRSGHHLLCENKS 1038
+R+W+ + F + IL P+ F+ +D W +G YSV++G+ L +
Sbjct: 947 SRNWNLNMLRDLFPWKDVEIILKQRPLFFK--EDSFCWLHSHNGLYSVKTGYEFLSKQVH 1004
Query: 1039 KEVAESSSVRGS--DIWKQIWNFNGPRSAQNFLWRLASNILPTRCNLSKKGISLDQSCPL 1096
+ + + V+ S ++ +IWN + + FLW+ +P L +GI D C +
Sbjct: 1005 HRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLM 1064
Query: 1097 CNSGLEDLNHLFLHCPAAKAVWFSSPLG------IHIPPNSMCREWMELWLKKDDPLAVQ 1150
C++ E +NH+ CP A+ VW + L + +M R ++L + D P ++
Sbjct: 1065 CDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSR-LIDLTQQNDLPHHLR 1123
Query: 1151 -VFGITLWRLWQGRNQLIFKNSPFDPALIAQSAVLLVEEFNLANRKAACHPISRAPTRWC 1209
V LW LW+ RN L+F+ + A E+ A T+WC
Sbjct: 1124 FVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQNDEKHLKITKWC 1183
Query: 1210 PPQTGTVKINVD-AGVFTDGSTGWGFVARDHHGAVLFSATRKEEMMVTPLVAERLALRWC 1268
PP G +K N+ A +G +V RD G VL + R + +P A+ + W
Sbjct: 1184 PPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWA 1243
Query: 1269 LSWAEGEQFTSLCIETDAEQVVHCL 1293
L F + + +++ L
Sbjct: 1244 LESMTHHHFDRVIFASSTHEIIQAL 1268
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 654 bits (1686), Expect = 0.0
Identities = 414/1386 (29%), Positives = 692/1386 (49%), Gaps = 80/1386 (5%)
Query: 2 TPMKLLSWNCRGLGNPRAIRALLRLIRIQNPQVVFLMETRLKSDEMERVRINCGFSSGLF 61
+PM++ WNC+GLG P +R L + R+ ++FL+ET+ + + + + GF
Sbjct: 361 SPMRVGFWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGVKMGFEDMCI 420
Query: 62 VPCDGFGKERACDIALLWMDSVNLSIRSYSLNHIMGRIEDVESGKYWSITGIYGYPDETN 121
+ G + + W +++ + S+ + + +E Y S IYG+P +
Sbjct: 421 ISPRGLSG----GLVVYWKKHLSIQVISHDVRLVDLYVEYKNFNFYLSC--IYGHPIPSE 474
Query: 122 KKKTWDLLRSLTPVEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLDL 181
+ W+ L+ ++ W+ CGDFN+IL+ EK GG RS L N + CN+ DL
Sbjct: 475 RHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDL 534
Query: 182 GFNGYPFTWSNGRHGSGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSDHAAISIEL-- 239
G P++W R C LDRVF + ++ F + L GSDHA + I++
Sbjct: 535 KSKGNPYSWVGKRQNETIESC-LDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAE 593
Query: 240 DVCLEDAHKKKLHVFRFEKC-WADDDRCEAMVRGSWNNAT-----GLASKIEAMQSLDSK 293
+VC + FR+++ + +D +++ RG WN G K+ + +K
Sbjct: 594 EVCTKRGQ------FRYDRRHFQFEDFVDSVQRG-WNRGRSDSHGGYYEKLHCCRQELAK 646
Query: 294 FKEYITSEIRKELLEIETQLNNHASWDGSPDNITKFRELEAKHSELLQTEETMWRQRSRA 353
+K + +++ ++ +++ A D + + T R L ++ + EE W +SR
Sbjct: 647 WKRRTKTNTAEKIETLKYRVDA-AERDHTLPHQTILR-LRQDLNQAYRDEELYWHLKSRN 704
Query: 354 TWLKEGDKNSKFFHAKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNP 413
W+ GD+N+ FF+A K R N IK I D +G+ D + KV +YFA LFT++
Sbjct: 705 RWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADLFTTTQT 764
Query: 414 TTVDQTCLVVKDRLSPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYI 473
+ ++ + +++ + +S + E++DA+ + +APG DG A F+ W +
Sbjct: 765 SDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDL 824
Query: 474 VGSEVVSLALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIA 533
+G++V + IN+T I LIPK +P + +RPISLC KI++K +
Sbjct: 825 IGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILI 884
Query: 534 NRLKPILPEIMDEEQSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYD 593
RLK L +++ + Q+AFV G+ I+DN ++A E H +K + + + G +A+K D++KAYD
Sbjct: 885 KRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYD 944
Query: 594 RIEWSFVKSMLQSMNFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPY 653
R+EW+F++ ++ + F + I+ C+++VSY++LING P + FP RG+RQGDPLSPY
Sbjct: 945 RVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPY 1004
Query: 654 LFILCANVLSGLLKKEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISV 713
LF+ CA VLS +L+K E + +IHG++I ++ I+HLLFADD L F RAS + + + +
Sbjct: 1005 LFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALI 1064
Query: 714 LNTYQDASGQIVNLDKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKK 773
Y++ASGQ +N KS + + + + ++ + + + I V +YLGLP GR K
Sbjct: 1065 FKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKV 1124
Query: 774 EVFSFVQERVWKKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGML 833
E+F ++ +V ++ +GW LS AGKE +IKA+A A+P Y M+C+ LP C+ + ++
Sbjct: 1125 ELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLI 1184
Query: 834 AKFWWASDEYKRKIHWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMS 893
FWW + G LGF+ FN+ALL KQ WR+L + SL++
Sbjct: 1185 TAFWWGKE------------------NEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLA 1226
Query: 894 SILKSRYFPRTSISITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWIPG 953
+ K Y+P T+ G Y W S+ + + L++ +G+G+T +I++D W+P
Sbjct: 1227 RLYKGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLP- 1285
Query: 954 TRCTPIQRTEGTV-DEDAVVADLIVHETRSWDRERIMASFNSFIAKKILSIPISFRLPDD 1012
P + G + DED VADL R WD N + S+ +S D
Sbjct: 1286 --TLPPRPARGPILDEDMKVADLWRENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAARD 1343
Query: 1013 KVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGSDIWKQ-IWNFNGPRSAQNFLWR 1071
W + ++ +Y+VRSG+ + E + + G KQ IW ++F+WR
Sbjct: 1344 SYKWAYTRNTQYTVRSGYWVATHVNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWR 1403
Query: 1072 LASNILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGIHIPPNS 1131
S L T L + I D +C C + E +NH+ C A+ VW S+ N
Sbjct: 1404 CLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSANFS---GSNR 1460
Query: 1132 MC-----REWMELWL--KKDDPLAV----QVFGITLWRLWQGRNQLIFKNSPFDPALIAQ 1180
+C E + L L KK+ L + F I +WRLW+ RN+ +F+ P +AQ
Sbjct: 1461 LCFTDNLEENIRLILQGKKNQNLPILNGLMPFWI-MWRLWKSRNEYLFQQLDRFPWKVAQ 1519
Query: 1181 SAVLLVEEF--NLANRKAACH--------PISRAPTRWCPPQTGTVKINVDAGVFTDG-- 1228
A E+ + N A H P+SR+ +W P G +K N D+G + G
Sbjct: 1520 KAEQEATEWVETMVNDTAISHNTAQSNDRPLSRS-KQWSSPPEGFLKCNFDSG-YVQGRD 1577
Query: 1229 --STGWGFVARDHHGAVLFSATRKEEMMVTPLVAERLALRWCLSWAEGEQFTSLCIETDA 1286
STGW + RD +G VL S K + + L AE L L + + E D
Sbjct: 1578 YTSTGW--ILRDCNGRVLHSGCAKLQQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDN 1635
Query: 1287 EQVVHCLLRRKKIAAIEFLILDCLDYLSRFSTCSVNFAGRSCNQVAHSLVGLAKTVGNIC 1346
++ + + + + +E L+ D ++++ S+ + R N A L A ++ ++
Sbjct: 1636 LELTNLINKTEDHHLLETLLYDIRFWMTKLPFSSIGYVNRERNLAADKLTKYANSMSSLY 1695
Query: 1347 WVGSVP 1352
VP
Sbjct: 1696 ETFHVP 1701
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 645 bits (1664), Expect = 0.0
Identities = 422/1377 (30%), Positives = 653/1377 (46%), Gaps = 135/1377 (9%)
Query: 13 GLGNPRAIRALLRLIRIQNPQVVFLMETRLKSDEMERVRINCGFSSGLFVPCDGFGKERA 72
G+G P L L ++ V+FL+ET K + + + GF + + P G +
Sbjct: 391 GIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQG----HS 446
Query: 73 CDIALLWMDSVNLSIRSYSLNHIMGRIEDVESGKYWSITGIYGYPDETNKKKTWDLLRSL 132
+ALLW DSV LS HI I Y ++ +YG+P ++ + W +L
Sbjct: 447 GGLALLWKDSVRLSNLYQDDRHIDVHISINNINFY--LSRVYGHPCQSERHSLWTHFENL 504
Query: 133 TPVEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLDLGFNGYPFTWSN 192
+ D W+ GDFN+ILSN EK GG R RN V C+L D+ G F+W
Sbjct: 505 SKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVG 564
Query: 193 GRHGSGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSDHAAISIELDVCLEDAHKKKLH 252
RH S + C LDR F + E F ++ L GSDH + + L E +K+
Sbjct: 565 ERH-SHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSL----EKTETRKMR 619
Query: 253 VFRFEKCWADDDRCEAMVRGSWNNATG-----LASKIEAMQSLDSKFKEYITSEIRKELL 307
FRF+K + + V+ WN A L ++ + +K K R +
Sbjct: 620 PFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRIN 679
Query: 308 EIETQLNNHASWDGSPDNITKFRELEAKHSELLQTEETMWRQRSRATWLKEGDKNSKFFH 367
+++ L+ S + T ++ + + + EE W+Q+SR W+KEGD+N++FFH
Sbjct: 680 QLQAALDKAMSSVNRTERRT-ISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFH 738
Query: 368 AKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDRL 427
A K R +N + IKD+ G+ + G ++ ++F ++ S+ K +
Sbjct: 739 ACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIV 798
Query: 428 SPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILN 487
+ + + + S EI +AI + KAPGPDGL A F++ W IVG +V+
Sbjct: 799 TEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFR 858
Query: 488 EGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEE 547
+ IN T I +IPK NP + + +RPI+LCNV+ KI++K + RLK L I+ +
Sbjct: 859 TSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDS 918
Query: 548 QSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSM 607
Q+AF+ GRL+ DN +IA E H +K + + + MA+K D++KAYDR+EW+F+++ ++
Sbjct: 919 QAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLF 978
Query: 608 NFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLK 667
F E I I+ + +V+Y +L+NG P P+RG+RQGDPLSPYLFILCA++L+ L+K
Sbjct: 979 GFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIK 1038
Query: 668 KEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNL 727
+ I GIRI P +THL FADD L F +++V Q + V + Y+ SGQ +N+
Sbjct: 1039 NRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINM 1098
Query: 728 DKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKI 787
KS +++ V + + + I++ +YLGLP FGR K+++F+++ ERV K+
Sbjct: 1099 SKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRT 1158
Query: 788 KGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKI 847
W K LS AGKE ++K+VA ++P Y MSC+KLP +E +L FWW + KR+I
Sbjct: 1159 SSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREI 1218
Query: 848 HWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSILKSRYFPRTSIS 907
W+ W RL +KK GGLGFR + FN ALL KQ WR++ + NSL + I+K+RYF SI
Sbjct: 1219 PWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSIL 1278
Query: 908 ITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWIPGTRCTPIQRTEGTVD 967
K Y W S++ ++++ + +++G+G+T
Sbjct: 1279 DAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKT------------------------- 1313
Query: 968 EDAVVADLIVHETRSWDRERIMASFNSFIAKKILSIPISFRLPDDKVTWQWEKSGEYSVR 1027
R W+ I + + +++ +S + DK+ W + SG+Y+
Sbjct: 1314 ----------GSYRYWNAHLISQLVSPDDHRFVMNHHLSRIVHQDKLVWNYSSSGDYT-- 1361
Query: 1028 SGHHLLCENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLWRLASNILPTRCNLSKKG 1087
+W + LWR S LPTR L +G
Sbjct: 1362 ----------------------------LWKLPIIPKIKYMLWRTISKALPTRSRLLTRG 1393
Query: 1088 ISLDQSCPLCNSGLEDLNHLFLHCPAAKAVW------------FSSPLGIHIPPNSMCRE 1135
+ +D CP C + E +NH+ CP A ++W FS +I + +
Sbjct: 1394 MDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHTFSQDTEENI--SFLINS 1451
Query: 1136 WMELWLKKDDPLAVQVFGITLWRLWQGRNQLIF-KNSPFDPALIAQSAVLLVEEFNLANR 1194
+ L + LA F + +WRLW+ RN L+F K S ++ Q+ + E NR
Sbjct: 1452 FSNNTLNTEQRLA--PFWL-IWRLWKARNNLVFNKFSESCSRVVTQTEAEVNEWLQSVNR 1508
Query: 1195 KAACHPIS----RAPTRWCPPQTGTVKINVDAGVFTDGST----GWGFVARDHHGAVLFS 1246
+ ++ RA RW P VK N DAG FT +T GW
Sbjct: 1509 REDASVLTRSSHRANVRWKKPVFPLVKCNFDAG-FTGNNTQSTGGW-------------- 1553
Query: 1247 ATRKEEMMVTPLVAERLALRWCLSWAEGEQFTSLCIETDAEQVVHCLLRRKKIAAIEFLI 1306
++ E AL + A + + E D E ++ + I L+
Sbjct: 1554 -----------IIPETKALLIAMQQAWVRGYKCVQFEGDCEILIKAINGAISRCEITSLL 1602
Query: 1307 LDCLDYLSRFSTCSVNFAGRSCNQVAHSLVG-LAKTVGNICWVGSVPQQIYPSLCKD 1362
D + SRFST F R CN AH L L G P + SLCKD
Sbjct: 1603 RDVDFWASRFSTVVFTFTNRLCNNTAHLLASPLYSCYKFQSNSGYQPLWLKNSLCKD 1659
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 631 bits (1628), Expect = e-179
Identities = 404/1222 (33%), Positives = 621/1222 (50%), Gaps = 83/1222 (6%)
Query: 75 IALLWMDSVNLSIRSYSLNHIMGRIEDVESGKYWSITGIYGYPDETNKKKTWDLLRSLTP 134
+ALLW SV + ++ N + +++ + ++ +YG PD + + + W+ + +
Sbjct: 31 LALLWKSSVQVDLKFVDKNLMDAQVQF--GAVNFCVSCVYGDPDRSKRSQAWERISRIGV 88
Query: 135 VEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLDLGFNGYPFTWSNGR 194
D W GDFNDIL N EK GG RS L ++ C+L+++ +G FTW+ GR
Sbjct: 89 GRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWA-GR 147
Query: 195 HGSGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSDHAAISIELDVCLEDAHKKKLHVF 254
G I CRLDR F + E+ F L GSDH + I+L + +D+++ + F
Sbjct: 148 RGDHWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKL-MSSQDSYRGQ---F 203
Query: 255 RFEKCWA-DDDRCEAMVR----GSWNNATGLASKIEAMQSLDSKFKEYITSEIRKELLEI 309
RF+K + +D EA++R G +A ++ A + S +K+ ++ ++
Sbjct: 204 RFDKRFLFKEDVKEAIIRTWSRGKHGTNISVADRLRACRKSLSSWKKQNNLNSLDKINQL 263
Query: 310 ETQLNNHAS--WDGSPDNITKFRELEAKHSELLQTEETMWRQRSRATWLKEGDKNSKFFH 367
E L S W + L+ ++ + EE W+Q+SR WL+ G++NSK+FH
Sbjct: 264 EAALEKEQSLVWP----IFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFH 319
Query: 368 AKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDRL 427
A KQ + I+K+KD G +V YF LF SSNP+ + R+
Sbjct: 320 AAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRV 379
Query: 428 SPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILN 487
S E S EIK+A+ + P APGPDG+ ALFFQ YW VG++V S
Sbjct: 380 SEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFA 439
Query: 488 EGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEE 547
+G N T + LIPK ++P+ RPISLC+V+ KI++K +A RL+P LPEI+ +
Sbjct: 440 DGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDT 499
Query: 548 QSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSM 607
QSAFV RLITDN ++A E H +K + MA+K DM+KAYDR+EWS+++S+L S+
Sbjct: 500 QSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSL 559
Query: 608 NFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLK 667
F +N I+ C+S+V+Y +LIN P +RGLRQGDPLSP+LF+LC L+ LL
Sbjct: 560 GFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLN 619
Query: 668 KEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNL 727
K + + + GI+ + N P + HLLFADD L +AS E++ + +L Y +A+GQ +NL
Sbjct: 620 KAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINL 679
Query: 728 DKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKI 787
+KS +++ V K I + I T YLGLP F SK ++ ++++R+ +K+
Sbjct: 680 NKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKL 739
Query: 788 KGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKI 847
W +CLS+ GKE L+K+VA A+P + MSC+KLP C+ +E +A FWW S ++ RKI
Sbjct: 740 DVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKI 799
Query: 848 HWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSILKSRYFPRTSIS 907
HW W RL K GGLGFR FN+ALL KQ WRLL + L+S +LKSRYF T
Sbjct: 800 HWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFL 859
Query: 908 ITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWIPGTRCTPIQRTEGTVD 967
+ +P + WRS++ REL+ +G+G ++ ++ D WI R D
Sbjct: 860 DAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNLIYD 919
Query: 968 EDAVVADLIVHETRSWDRERIMASFNSFIAKKILSI----PISFRLPDDKVTWQWEKSGE 1023
V L+ T WD E + + F+ + IL I P+ + D W+ KSG+
Sbjct: 920 VTLKVKALLNPRTGFWDEEVL---HDLFLPEDILRIKAIKPVISQA--DFFVWKLNKSGD 974
Query: 1024 YSVRSGHHLLCENKSKEVAESSSVRGSDIW--KQIWNFNGPRSAQNFLWRLASNILPTRC 1081
+SV+S + L + KS+ + S++ S + Q+WN + FLW+
Sbjct: 975 FSVKSAYWLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTDPKIKIFLWK---------- 1024
Query: 1082 NLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGIHIPPN--------SMC 1133
+C E NH CP ++ +W S PP+ S
Sbjct: 1025 --------------VCGELGESTNHTLFLCPLSRQIWALS--DYPFPPDGFSNGSIYSNI 1068
Query: 1134 REWMELWLKKDDPLAV-QVFGITLWRLWQGRNQLIFKNSPFDPALIAQSAVLLVEEFNLA 1192
+E K+ P+ + ++F LWR+W+ RN IF+ + A V+ + + +
Sbjct: 1069 NHLLENKDNKEWPINLRKIFPWILWRIWKNRNSFIFEGISYP----ATDTVIKIRDDVVE 1124
Query: 1193 NRKAACHPISRAPTRWCPPQTGTVKI--NVDAGVFTDGSTGWGFVARDHHGAVLFSATRK 1250
+A C + + PP + V +V ++ W G VL + R
Sbjct: 1125 WFEAQC--LDGEGSALNPPLSNGVHFVGSVSENLWIKPPANW-------DGIVLLHSRRS 1175
Query: 1251 EEMMVTPLVAERLALRWCLSWA 1272
P+ ++ AL CL WA
Sbjct: 1176 ----FAPISSKADALLRCLLWA 1193
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 630 bits (1626), Expect = e-179
Identities = 425/1320 (32%), Positives = 653/1320 (49%), Gaps = 60/1320 (4%)
Query: 4 MKLLSWNCRGLG--NPRAIRALLRLIRIQNPQVVFLMETRLKSDEMERVRINCGFSSGLF 61
M L+SWNC+GLG I L+ + P+V+FLMET+ S+ + ++ G+
Sbjct: 1 MSLVSWNCQGLGWSQDLTIPRLMEMRLSHFPEVLFLMETKNCSNVVVDLQEWLGYERVFT 60
Query: 62 VPCDGFGKERACDIALLWMDSVNLSIRSYSLNHIMGRIEDVESGKYWSITGIYGYPDETN 121
V G +AL W V++ I+ N I +I+ Y ++ +YG P ++
Sbjct: 61 VNPIGLSG----GLALFWKKGVDIVIKYADKNLIDFQIQFGSHEFY--VSCVYGNPAFSD 114
Query: 122 KKKTWDLLRSLTPVEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLDL 181
K W+ + + ++ W GDFN IL N EK GG R + ++ C++L+L
Sbjct: 115 KHLVWEKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLEL 174
Query: 182 GFNGYPFTWSNGRHGSGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSDHAAISIELDV 241
G PFTW G+ I RLDR F + + + F L + GSDH + + L
Sbjct: 175 PSIGNPFTWG-GKTNEMWIQSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTK 233
Query: 242 CLEDAHKKKLHVFRFEKCWADDDRCEAMVRGSWNNATG-----LASKIEAMQSLDSKFKE 296
E+ FRF+K + + + +WN + + K++ +S S++K+
Sbjct: 234 TKEEYRGN----FRFDKRLFNQPNVKETIVQAWNGSQRNENLLVLDKLKHCRSALSRWKK 289
Query: 297 YITSEIRKELLEIETQLNNHASWDGSPDNITKFRELEAKHSELLQTEETMWRQRSRATWL 356
+ + L S G P F L+ + EE W Q+SRA W+
Sbjct: 290 ENNINSSTRITQARAALELEQS-SGFPRADLVF-SLKNDLCKANHDEEVFWSQKSRAKWM 347
Query: 357 KEGDKNSKFFHAKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPTTV 416
GDKN+ FFHA K I ++ D G++ + YF+ LF S++P++
Sbjct: 348 HSGDKNTSFFHASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSF 407
Query: 417 DQTCLVVKDRLSPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGS 476
+ R++ + S EI++A+ + APG DG FFQKYW I+
Sbjct: 408 VDLFEDYQPRVTESMNNTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSIICL 467
Query: 477 EVVSLALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRL 536
+V G + N T + L+PK K P RPISLC+V+ KI++K + RL
Sbjct: 468 QVTKEIQNFFLLGYFPKSWNFTHLCLLPKKKKPDKMTDLRPISLCSVLYKIISKIMVRRL 527
Query: 537 KPILPEIMDEEQSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIE 596
+P LP+++ QSAFV RLI DN +IA E H ++ KG +A+K +M+KA+DR+E
Sbjct: 528 QPFLPDLVSPNQSAFVAERLIFDNILIAHEVVHGLRTHKSVSKGFIAIKSNMSKAFDRVE 587
Query: 597 WSFVKSMLQSMNFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFI 656
W++V+++L ++ F + + I+ IS+VSY +LIN + P RGLRQGDPLSP+LF+
Sbjct: 588 WNYVRALLDALGFHQKWVGWIMFMISSVSYSVLINDKAFGNIVPSRGLRQGDPLSPFLFV 647
Query: 657 LCANVLSGLLKKEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISVLNT 716
LC+ L+ L+ + E+ + GIR + N P I HLLFADD L +A EE I S+
Sbjct: 648 LCSEGLTHLMNRAERQGLLSGIRFSENGPAIHHLLFADDSLFMCKAVKEEVTVIKSIFKV 707
Query: 717 YQDASGQIVNLDKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVF 776
Y D +GQ +N DKS ++ V K I + I S YLGLP F SK ++
Sbjct: 708 YGDVTGQRINYDKSSITLGALVDEDCKVWIQAELGITNEGGASTYLGLPECFSGSKVQLL 767
Query: 777 SFVQERVWKKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKF 836
++++R+ ++ GW + LS GKETL+KA A A+ Y MSC+KL + C + ++ F
Sbjct: 768 DYIKDRLKTRLSGWFARTLSMGGKETLLKAFALALLFYAMSCFKLTKTTCVNMTSAMSDF 827
Query: 837 WWASDEYKRKIHWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSIL 896
WW + E+KRK HW+ ++ +K+ GGLGFR FN+ALL KQ WRLL NSL +
Sbjct: 828 WWNALEHKRKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLLQFPNSLFARFF 887
Query: 897 KSRYFPRTSISITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWI-PGTR 955
KSRY+ ++ P YAWRS++ R+L+ +GNG + ++ D WI
Sbjct: 888 KSRYYDEEDFLDAELKATPSYAWRSILHGRDLLIKGFRKKVGNGSSTSVWMDPWIYDNDP 947
Query: 956 CTPIQRTEGTVDEDAVVADLIVHETRSWDRERIMASFN----SFIAKKILSIPISFRLPD 1011
P+Q+ +V+ D V DLI E R R+R+ F I K+ + + D
Sbjct: 948 RLPLQK-HFSVNLDLRVHDLINVEDRCRRRDRLEELFYPADIEIIVKRNPVVSM-----D 1001
Query: 1012 DKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGS--DIWKQIWNFNGPRSAQNFL 1069
D W KSGEYSV+SG+ L + E+ + V+ S + ++IW+ + FL
Sbjct: 1002 DFWVWLHSKSGEYSVKSGYWLAFQTNKPELIREARVQPSTNGLKEKIWSTLTSPKIKLFL 1061
Query: 1070 WRLASNILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSS--PLGIHI 1127
WR+ S+ LP + ++G+ +D C +C E +NH+ C A+ VW S P
Sbjct: 1062 WRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVPTSQFG 1121
Query: 1128 PPNSMCREWME--LWLKKDDPLAVQV---FGITLWRLWQGRNQLIFKNSPFDPALIAQSA 1182
NS ++ L LK + Q+ + LWRLW+ R++L F+ + F P +
Sbjct: 1122 FQNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTIFSPLKSIEKI 1181
Query: 1183 VLLVEEFNLANRKAACHPISR------APTRWCPPQTGTVKINVDAGVFTDGS--TGWGF 1234
V+E+ LA A P+ W PP G VK N+ +GV++ G +
Sbjct: 1182 RDDVQEWFLAQALVASVDAGETVCSAPCPSSWEPPPLGWVKCNI-SGVWSGKKRVCGGAW 1240
Query: 1235 VARDHHGAVLFSATRKEEMMVTPLVAERLALRWCLSWAEGEQFTSLCIETDAEQVVHCLL 1294
V RD HG VL + R + L ++ AL C+ WA +C+ TD+ + CLL
Sbjct: 1241 VLRDDHGKVLLHSRR----AFSNLSVKKDALFCCVKWA-----LRVCLATDS--LRFCLL 1289
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 628 bits (1619), Expect = e-178
Identities = 370/1029 (35%), Positives = 561/1029 (53%), Gaps = 29/1029 (2%)
Query: 75 IALLWMDSVNLSIRSYSLNHIMGRIEDVESGKYWSITGIYGYPDETNKKKTWDLLRSLTP 134
+ALLW SV + ++ N + +++ + ++ +YG PD + + + W+ + +
Sbjct: 34 LALLWKSSVQVDLKFVDKNLMDAQVQF--GAVNFCVSCVYGDPDRSKRSQAWERISRIGV 91
Query: 135 VEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLDLGFNGYPFTWSNGR 194
D W GDFNDIL N EK GG RS L ++ C+L+++ +G FTW+ GR
Sbjct: 92 GRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWA-GR 150
Query: 195 HGSGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSDHAAISIELDVCLEDAHKKKLHVF 254
G I CRLDR F + E+ F L GSDH + I+L + +D+++ + F
Sbjct: 151 RGDHWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKL-MSSQDSYRGQ---F 206
Query: 255 RFEKCWA-DDDRCEAMVR----GSWNNATGLASKIEAMQSLDSKFKEYITSEIRKELLEI 309
RF+K + +D EA++R G +A ++ A + S +K+ ++ ++
Sbjct: 207 RFDKRFLFKEDVKEAIIRTWSRGKHGTNISVADRLRACRKSLSSWKKQNNLNSLDKINQL 266
Query: 310 ETQLNNHAS--WDGSPDNITKFRELEAKHSELLQTEETMWRQRSRATWLKEGDKNSKFFH 367
E L S W + L+ ++ + EE W+Q+SR WL+ G++NSK+FH
Sbjct: 267 EAALEKEQSLVWP----IFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFH 322
Query: 368 AKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDRL 427
A KQ + I+K+KD G +V YF LF SSNP+ + R+
Sbjct: 323 AAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRV 382
Query: 428 SPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILN 487
S E S EIK+A+ + P APGPDG+ ALFFQ YW VG++V S
Sbjct: 383 SEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFA 442
Query: 488 EGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEE 547
+G N T + LIPK ++P+ RPISLC+V+ KI++K +A RL+P LPEI+ +
Sbjct: 443 DGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDT 502
Query: 548 QSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSM 607
QSAFV RLITDN ++A E H +K + MA+K DM+KAYDR+EWS+++S+L S+
Sbjct: 503 QSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSL 562
Query: 608 NFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLK 667
F +N I+ C+S+V+Y +LIN P +RGLRQGDPLSP+LF+LC L+ LL
Sbjct: 563 GFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLN 622
Query: 668 KEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNL 727
K + + + GI+ + N P + HLLFADD L +AS E++ + +L Y +A+GQ +NL
Sbjct: 623 KAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINL 682
Query: 728 DKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKI 787
+KS +++ V K I + I T YLGLP F SK ++ ++++R+ +K+
Sbjct: 683 NKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKL 742
Query: 788 KGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKI 847
W +CLS+ GKE L+K+VA A+P + MSC+KLP C+ +E +A FWW S ++ RKI
Sbjct: 743 DVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKI 802
Query: 848 HWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSILKSRYFPRTSIS 907
HW W RL K GGLGFR FN+ALL KQ WRLL + L+S +LKSRYF T
Sbjct: 803 HWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFL 862
Query: 908 ITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWIPGTRCTPIQRTEGTVD 967
+ +P + WRS++ REL+ +G+G ++ ++ D WI R D
Sbjct: 863 DAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNLIYD 922
Query: 968 EDAVVADLIVHETRSWDRERIMASFNSFIAKKILSI----PISFRLPDDKVTWQWEKSGE 1023
V L+ T WD E + + F+ + IL I P+ + D W+ KSG+
Sbjct: 923 VTLKVKALLNPRTGFWDEEVL---HDLFLPEDILRIKAIKPVISQA--DFFVWKLNKSGD 977
Query: 1024 YSVRSGHHLLCENKSKEVAESSSVRGSDIW--KQIWNFNGPRSAQNFLWRLASNILPTRC 1081
+SV+S + L + KS+ + S++ S + Q+WN + FLW++ S ILP
Sbjct: 978 FSVKSAYWLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTDPKIKIFLWKVLSGILPVAE 1037
Query: 1082 NLSKKGISL 1090
NL+ +G+SL
Sbjct: 1038 NLNGRGMSL 1046
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 611 bits (1575), Expect = e-173
Identities = 322/874 (36%), Positives = 504/874 (56%), Gaps = 16/874 (1%)
Query: 3 PMKLLSWNCRGLGNPRAIRALLRLIRIQNPQVVFLMETRLKSDEMERVRINCGFSSGLFV 62
PMK+++WNCRGLGN +R LL L + +P ++FL T++ +++++ R G + +
Sbjct: 447 PMKIIAWNCRGLGNGPTVRGLLNLQKEDDPDILFLSNTKMDTNKLQCFRWKLGMPNLVVK 506
Query: 63 PCDGFGKERACDIALLWMDSVNLSIRSYSLNHIMGRIEDVESGKYWSITGIYGYPDETNK 122
C G ++ +A+ W +NL +R+ S + + + + G +W TG+YG P K
Sbjct: 507 DCQG----KSGGLAVFWKKEINLRLRTVSRLFMDVDVME-DDGFWWRFTGVYGEPRSDKK 561
Query: 123 KKTWDLLRSLTPVEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLDLG 182
TW LR+L + ++WLC GDFN++L + EK G+ ++ + R ++ C+L +LG
Sbjct: 562 DLTWKALRTLNATKGELWLCVGDFNEVLFSWEKERGHAKAQSCMDRFRQTLDCCSLSNLG 621
Query: 183 FNGYPFTWSNGRH-GSGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSDHAAISIEL-- 239
F G PFTW N G I RLDR A ++ RF ++ SDH + +
Sbjct: 622 FTGDPFTWRNNWCVRDGYIRERLDRAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVTTSN 681
Query: 240 DVCLEDAHKKKLHVFRFEKCWADDDRCEAMVRGSWNNATGL--ASKIEAMQSLDSKFKEY 297
+V K FRFE WA ++ C +V +W + G ++A++ + + ++
Sbjct: 682 EVIWNGGRSKP--GFRFEAGWAREEHCAPIVENAWKLSVGPRGGKVMDAIREVAANLWDW 739
Query: 298 ---ITSEIRKELLEIETQLNNHASWDGSPDNITKFRELEAKHSELLQTEETMWRQRSRAT 354
++ K + + + L H S ++ L+ + +L + E WRQR+
Sbjct: 740 SKNFLGDLEKRIKKAKQALEAHRRSPISSSTASREAVLKYRLDKLEEQRELYWRQRANQH 799
Query: 355 WLKEGDKNSKFFHAKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPT 414
WL++GD+N+KFFH A +R K N IKK++ D G ++ +++ LFT+ P
Sbjct: 800 WLEKGDRNTKFFHECASERKKRNKIKKLRRDDGEVITDEAGSLSLISEFYKQLFTAGVPL 859
Query: 415 TVDQTCLVVKDRLSPEHVEWCNRSFSPAEIKDAIDQMHPLKAP-GPDGLPALFFQKYWYI 473
+D+ V R++ + + + EIK A+D + LKAP G DG+PALF++++W
Sbjct: 860 NLDELLQNVPKRVTSTMNDELMKGVTTEEIKKALDSIGDLKAPPGSDGMPALFYKQFWEC 919
Query: 474 VGSEVVSLALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIA 533
VG ++V L G+ + N T + LIPK NP RPISLCNVV KI +K +A
Sbjct: 920 VGDDIVHEVKDFLGGGEMPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYKIASKVLA 979
Query: 534 NRLKPILPEIMDEEQSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYD 593
NRLKP+L EI+ Q AFV R+ITDN ++A E H++K K +G G A+K M+KAYD
Sbjct: 980 NRLKPLLSEIISPIQIAFVPQRMITDNILLAYELTHFLKTKRRGSVGFAAVKQGMSKAYD 1039
Query: 594 RIEWSFVKSMLQSMNFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPY 653
R+EW F++ M+ + F N + +++C+++V+Y+I +NG+ + + P GLRQGDP+SPY
Sbjct: 1040 RVEWGFLEKMMLKLGFDRNWVFIVMKCVTSVTYRIKVNGEFTEQINPTGGLRQGDPISPY 1099
Query: 654 LFILCANVLSGLLKKEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISV 713
LF +CA S LL E+ + I++ +NAP I HLLFADD LL + A C+ +V
Sbjct: 1100 LFFICAEGFSTLLNAAEERGDLSVIKVCQNAPSINHLLFADDSLLLLKTDEGSAACLQNV 1159
Query: 714 LNTYQDASGQIVNLDKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKK 773
L+ Y+ SG+ +N +KS + +SRN+ +K+I ++I + +YLGLPV GRSK
Sbjct: 1160 LSLYERCSGETINKEKSSIMFSRNIKEVNKQIFMGALDIGVGAWNEKYLGLPVYMGRSKA 1219
Query: 774 EVFSFVQERVWKKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGML 833
+ S+++ERVWKKI+GWKEK LSRAGK+ LIKAVAQAIP + MSC+ L +G CD + ++
Sbjct: 1220 KTSSYLKERVWKKIQGWKEKLLSRAGKDVLIKAVAQAIPAFAMSCFNLTKGLCDEITSLI 1279
Query: 834 AKFWWASDEYKRKIHWMRWGRLGETKKRGGLGFR 867
+F+WA E + K+HW+ W L K++GG FR
Sbjct: 1280 CRFFWAQQERENKMHWIAWEHLCSRKEKGGFFFR 1313
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 610 bits (1574), Expect = e-173
Identities = 419/1335 (31%), Positives = 643/1335 (47%), Gaps = 100/1335 (7%)
Query: 38 METRLKSDEMERVRINCGFSSGLFVPCDGFGKERACDIALLWMDSVNLSIRSYSLNHIMG 97
MET+ + + + + G++ +P +G +AL W ++V + I + N I
Sbjct: 1 METKNQDEFISKTFDWMGYAHRFTIPPEGLSG----GLALYWKENVEVEILEAAPNFI-- 54
Query: 98 RIEDVESGKYWSITGIYGYPDETNKKKTWDLLRSLTPVEEDMWLCCGDFNDILSNEEKAG 157
N+ WD + SL WL GDFNDIL N EK G
Sbjct: 55 ----------------------DNRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQG 92
Query: 158 GNIRSFLQLSLSRNAVEDCNLLDLGFNGYPFTWSNGRHGSGRI*CRLDRVFASDEFIKRF 217
G +R R+ V L D+ G +W R+ S I RLDR + + + F
Sbjct: 93 GPLRWEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRY-SHFIKSRLDRALGNCSWSELF 151
Query: 218 SPIQINHLARFGSDHAAISIELDVCLEDAHKKKLHVFRFEKCWADDDRCEAMVRGSWNNA 277
+ +L GSDH + K+ FRF++ + + A+V+ W A
Sbjct: 152 PMSKCEYLRFEGSDHRPLVTYFGA----PPLKRSKPFRFDRRLREKEEIRALVKEVWELA 207
Query: 278 T--GLASKIEAMQSLDSKFKEYITSEIRKELLEIETQLNNHASWDGSPD-----NITKFR 330
+ KI + K+ + S K + + + L + S D PD +IT+
Sbjct: 208 RQDSVLYKISRCRQSIIKWTKEQNSNSAKAIKKAQQALESALSAD-IPDPSLIGSITQ-- 264
Query: 331 ELEAKHSELLQTEETMWRQRSRATWLKEGDKNSKFFHAKAKQRGKINSIKKIKDDRGVWW 390
ELEA + + EE W+Q SR WL GD+N +FHA + R +N++ I+D G +
Sbjct: 265 ELEAAYRQ----EELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEF 320
Query: 391 NGRDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDRLSPEHVEWCNRSF----SPAEIKD 446
+ +++ + YF +FT+SN + + VV++ LSP CN S EIK+
Sbjct: 321 HEEEQIASTISSYFQNIFTTSNNSDLQ----VVQEALSPIISSHCNEELIKISSLLEIKE 376
Query: 447 AIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILNEGKSTECINKTFIALIPKC 506
A+ + KAPGPDG A FF YW I+ ++V + + +N+T + LIPK
Sbjct: 377 ALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKI 436
Query: 507 KNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEEQSAFVQGRLITDNAIIAME 566
P + +RPI+LCNV KIV K + RL+P L E++ QSAFV GR I DN +I E
Sbjct: 437 SAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHE 496
Query: 567 CFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSMNFPENIINTILQCISTVSY 626
H+++ K MA+K DM+KAYDRI+W+F++ +L + F + I ++QC+ TVSY
Sbjct: 497 ILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSY 556
Query: 627 QILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLKKEEKDNKIHGIRIARNAPK 686
LING P P RGLRQGDPLSPYLFILC VLSGL +K ++ + GIR+AR +P+
Sbjct: 557 SFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQ 616
Query: 687 ITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVLNHDKEII 746
+ HLLFADD + F + + + ++L Y+ ASGQ +NL KS +++S K +
Sbjct: 617 VNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRV 676
Query: 747 CQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKIKGWKEKCLSRAGKETLIKA 806
+ I +YLGLP FGR K+++FS + +R+ ++ W + LS AGK+ L+KA
Sbjct: 677 KLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKA 736
Query: 807 VAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKIHWMRWGRLGETKKRGGLGF 866
V ++P+Y M C+KLP C ++ +L +FWW S KRK+ W+ W +L GGLGF
Sbjct: 737 VLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGF 796
Query: 867 RSFSDFNKALLGKQYWRLLADNNSLMSSILKSRYFPRTSISITKVGFQPRYA---WRSLM 923
R K WR+L + +SL+S +L +Y + S P +A WR ++
Sbjct: 797 REIE-------AKLSWRILKEPHSLLSRVLLGKYC--NTSSFMDCSASPSFASHGWRGIL 847
Query: 924 KARELVENDAHWVIGNGRTVRIFKDNWI-PGTRCTPIQRTEGTVDEDAVVADLIVHETRS 982
R+L+ W IG G ++ ++ + W+ P + TPI T ++D V DLI H+ +S
Sbjct: 848 AGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTET-NKDLSVHDLICHDVKS 906
Query: 983 WDRERIMASFNSFIAKKILSIPISFRLPDDKVTWQWEKSGEYSVRSGHHLLCENKSKEVA 1042
W+ E I + +I I I+ D + W KSGEY+ ++G+ L A
Sbjct: 907 WNVEAIRKHLPQY-EDQIRKITINALPLQDSLVWLPVKSGEYTTKTGYAL---------A 956
Query: 1043 ESSSVRGSDI---W-KQIWNFNGPRSAQNFLWRLASNILPTRCNLSKKGISLDQSCPLCN 1098
+ +S S + W K IW + ++FLW+ LP LS++ I + +C C
Sbjct: 957 KLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCG 1016
Query: 1099 SGLEDLNHLFLHCPAAKAVWFSSPLGIHIPPNSMCREWMELWLKKDDPLAVQVFGI---- 1154
E HL L CP AK VW +P+ + P + L + +A+ G+
Sbjct: 1017 Q-TESSLHLMLLCPYAKKVWELAPV-LFNPSEATHSSVALLLVDAKRMVALPPTGLGSAP 1074
Query: 1155 ----TLWRLWQGRNQLIFKNSPFDPALIAQSAVLLVEEFNLANRKAACHPISRAPTRWCP 1210
LW LW+ RN+LIF N + A+L + + + HP +P P
Sbjct: 1075 LYPWLLWHLWKARNRLIFDNHSCSEEGLVLKAILDARAW-MEAQLLIHHP---SPISDYP 1130
Query: 1211 PQTGTVKIN---VDAGVFTDGSTGWGFVARDHHGAVLFSATRKEEMMVTPLVAERLALRW 1267
T +K+ VDA T G G G+ +D + + + + L+AE LA+
Sbjct: 1131 SPTPNLKVTSCFVDAAWTTSGYCGMGWFLQDPYKVKIKENQSSSSFVGSALMAETLAVHL 1190
Query: 1268 CLSWAEGEQFTSLCIETDAEQVVHCLLRRKKIAAIEFLILDCLDYLSRFSTCSVNFAGRS 1327
L A L + +D ++++ L K I + L+ D + F+ F R
Sbjct: 1191 ALVDALSTGVRQLNVFSDCKELISLLNSGKSIVELRGLLHDIRELSVSFTHLCFFFIPRL 1250
Query: 1328 CNQVAHSLVGLAKTV 1342
N VA SL A +V
Sbjct: 1251 SNVVADSLAKSALSV 1265
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 594 bits (1532), Expect = e-168
Identities = 387/1207 (32%), Positives = 603/1207 (49%), Gaps = 45/1207 (3%)
Query: 147 NDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLDLGFNGYPFTWSNGRHGSGRI*CRLDR 206
N+IL N EK GG R R+ + L DL ++G PF+W R+ + RLDR
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMRY-DWFVRQRLDR 94
Query: 207 VFASDEFIKRFSPIQINHLARFGSDHAAISIELDVCLEDAHKKKLHVFRFEKCWADDDRC 266
+++ +++ F + +L GSDH + + +D +A K+ FRF+ D+D
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVD----EARVKRRGQFRFDNRLRDNDVV 150
Query: 267 EAMVRGSWNNATGLASKIEAMQSLDSKFKEY--ITSEIRKELLEIETQLNNHASWDGSPD 324
A+++ +W NA G AS + M + + + + EL+E +TQ + P
Sbjct: 151 NALIQETWTNA-GDASVLTKMNQCRREIINWTRLQNLNSAELIE-KTQKALEEALTADPP 208
Query: 325 NITKFRELEAKHSELLQTEETMWRQRSRATWLKEGDKNSKFFHAKAKQRGKINSIKKIKD 384
N T L A + EE W+QRSR WL GD+N+ +FHA + R N + ++D
Sbjct: 209 NPTTIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLTVMED 268
Query: 385 DRGVWWNGRDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDRLSPEHVEWCNRSFSPAEI 444
GV + ++ +++ YF +FTS + ++ +S ++ R + E+
Sbjct: 269 INGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEV 328
Query: 445 KDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILNEGKSTECINKTFIALIP 504
KDA+ ++ KAPGPDG A F+ YW+I+ ++V +N+T I LIP
Sbjct: 329 KDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIP 388
Query: 505 KCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEEQSAFVQGRLITDNAIIA 564
K P +RPI+LCN+ KIV K + R++ ILP+++ E QSAFV GR+I+DN +I
Sbjct: 389 KDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVLIT 448
Query: 565 MECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSMNFPENIINTILQCISTV 624
E H+++ + K MA+K DM+KAYDR+EW F+K +LQ F I+ +L+C+++V
Sbjct: 449 HEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSV 508
Query: 625 SYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLKKEEKDNKIHGIRIARNA 684
SY LING P + P RGLRQGDPLSP LFILC VLSGL + ++ ++ G+R++ N
Sbjct: 509 SYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSING 568
Query: 685 PKITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVLNHDKE 744
P++ HLLFADD + F+++ E + +L+ Y ASGQ +N KS V++S K
Sbjct: 569 PRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSVKG 628
Query: 745 IICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKIKGWKEKCLSRAGKETLI 804
+ + + I+ +YLGLP FGR K+++F + +++ +K W + LS+AGK+ ++
Sbjct: 629 QVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVML 688
Query: 805 KAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKIHWMRWGRLGETKKRGGL 864
KAV ++P Y MSC+KLP C ++ +L +FWW + RK W+ W +L K GGL
Sbjct: 689 KAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGGL 748
Query: 865 GFRSFSDFNKALLGKQYWRLLADNNSLMSSILKSRYFPRTSISITKVGFQPRYAWRSLMK 924
GFR N +LL K WRLL SL+S IL +Y +S K+ QP + WRS++
Sbjct: 749 GFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRSIIA 808
Query: 925 ARELVENDAHWVIGNGRTVRIFKDNWI----PGTRCTPIQRTEGTVDEDAVVADLIVHET 980
RE+++ W+I NG V I+ D W+ P P R +D V+ LI T
Sbjct: 809 GREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREH----QDLRVSALINQNT 864
Query: 981 RSWDRERIMASFNSFIAKKILSIPISFRLPDDKVTWQWEKSGEYSVRSGHHLLCENKSKE 1040
WD +I ++ I +P DK+ W KSG+Y+ RSG+ +
Sbjct: 865 LQWDWNKIAVILPNY-ENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGI------AS 917
Query: 1041 VAESSSVRGSDIWK-QIWNFNGPRSAQNFLWRLASNILPTRCNLSKKGISLDQSCPLCNS 1099
VA + W+ +W ++ +W+ A LP L ++ IS +C C +
Sbjct: 918 VASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHRCGA 977
Query: 1100 GLEDLNHLFLHCPAAKAVWFSSPL-GIHIPPNSMCREWMELWLKKDDPLAVQVFGITLWR 1158
E HLF HC A VW +PL +PP S + + L LKK + + G+T
Sbjct: 978 P-ESTTHLFFHCEFAAQVWELAPLQETTVPPGSSMLDALSL-LKK--AIILPPTGVTSAA 1033
Query: 1159 LWQGRNQLIFKNSPFDPALIAQSAVLLVEEFNLANRKAACHPISRAPTRWCPPQTGTVKI 1218
L+ + K A++ A + L + HPIS+ P ++G
Sbjct: 1034 LFPWICGIYGKLGTMTRAILDALAWQSAQRC-LPKTRNVVHPISQLPVL----RSGYFCF 1088
Query: 1219 NVDAGVFTDGS---TGWGF---VARDHHGAVLFSATRKEEMMVTPLVAERLALRWCLSWA 1272
VDA S +GW F A + A + R+ + + L AE A++ L A
Sbjct: 1089 -VDAAWIAQSSLAGSGWVFQSATALEKETATYSAGCRR---LPSALSAEAWAIKSALLHA 1144
Query: 1273 EGEQFTSLCIETDAEQVVHCLLRRKKIAAIEFLILDCLDYLSRFSTCSVNFAGRSCNQVA 1332
T L + +D++ VV L I I L+++ F + NF RS N +A
Sbjct: 1145 LQLGRTDLMVLSDSKSVVDALTSNISINEIYGLLMEIRALRVSFHSLCFNFISRSANAIA 1204
Query: 1333 HSLVGLA 1339
+ L+
Sbjct: 1205 DATAKLS 1211
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 582 bits (1499), Expect = e-164
Identities = 302/757 (39%), Positives = 459/757 (59%), Gaps = 8/757 (1%)
Query: 157 GGNIRSFLQLSLSRNAVEDCNLLDLGFNGYPFTWSNGRH-GSGRI*CRLDRVFASDEFIK 215
GG RS ++ R A+EDC L DLGF G FTW N H S I RLDR A+ +
Sbjct: 488 GGAPRSESCMAKFRQALEDCQLHDLGFVGDAFTWRNHHHLASNYIKERLDRAVANGAWRA 547
Query: 216 RFSPIQINHLARFGSDHAAISIELDVCLEDAHKKKLHVF-RFEKCWADDDRCEAMVRGSW 274
RF +++ + SDH ++ +E + + L + +FE W +++ C+A V +W
Sbjct: 548 RFPLVRVINGDPRHSDHRSVIVETGATEKQQWGQPLEIMQKFEARWLEEEECQARVEEAW 607
Query: 275 NNAT-GLASKIEAMQSLDSK----FKEYITSEIRKELLEIETQLNNHASWDGSPDNITKF 329
NA G +++ +QS K + + E++K + + +L S + +
Sbjct: 608 ENALEGGQTRLMEIQSRVLKELWAWDRTVLGELKKRVKNLRKELEKCRREPISNRQVNRE 667
Query: 330 RELEAKHSELLQTEETMWRQRSRATWLKEGDKNSKFFHAKAKQRGKINSIKKIKDDRGVW 389
L K LL + W+QR+ +TWL +GD+N+KFFHA+A ++ K N+I+K++D G
Sbjct: 668 HLLRYKLERLLDQQHIYWKQRAHSTWLTKGDRNTKFFHAQASEKKKRNTIQKLQDGHGGL 727
Query: 390 WNGRDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDRLSPEHVEWCNRSFSPAEIKDAID 449
G ++++ + + + LF S+ + +D V+ R++PE E + E+ A+
Sbjct: 728 VAG-NQLKSFISNQYQQLFRSNGCSQMDAVLQCVQARVTPEMREGLAAPYQREEVWVALK 786
Query: 450 QMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILNEGKSTECINKTFIALIPKCKNP 509
M LKAPG DG+PA+F++K+ + G +V L +LN G + N T + LIPK K P
Sbjct: 787 DMGDLKAPGADGIPAIFYKKFLSLAGDKVKDEVLAVLNGGDMPQGWNDTVVVLIPKTKQP 846
Query: 510 SSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEEQSAFVQGRLITDNAIIAMECFH 569
+ RPISLCNV K+++K I NRLK +L EI+ QSAFV RLIT N ++A E H
Sbjct: 847 DTLKDLRPISLCNVAYKLISKVIVNRLKVVLLEIISPSQSAFVPRRLITYNVLLAYELTH 906
Query: 570 WMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSMNFPENIINTILQCISTVSYQIL 629
++ ++ KGK GV A+KLDM+KAYDR+EW F++ M+ + F + +N +++C+++V+Y+I
Sbjct: 907 YLNQRKKGKNGVAAIKLDMSKAYDRVEWDFLRHMMLRLGFHDQWVNLVMKCVTSVTYRIK 966
Query: 630 INGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLKKEEKDNKIHGIRIARNAPKITH 689
ING+ S + +P+RGLRQGDPLSPYLFI+CA LS LL+K + D KI GI++ R+ P+I H
Sbjct: 967 INGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQKAQADGKIEGIKVCRDTPRINH 1026
Query: 690 LLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVLNHDKEIICQR 749
L FADD L+ RA +AQ + VLN Y+ ASGQ++N DKS V +S N L D+ +
Sbjct: 1027 LFFADDSLVLMRAGQNDAQELRRVLNIYEVASGQVINKDKSSVLFSPNTLQSDRMEVRSA 1086
Query: 750 INIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKIKGWKEKCLSRAGKETLIKAVAQ 809
+ I + RYLGLPV G+S+++ F +++ +VW +I+GW+EK LS+AGKE L+KAVAQ
Sbjct: 1087 LCINQEAKNERYLGLPVSIGKSRRKAFEYIKRKVWLRIQGWQEKLLSKAGKEILVKAVAQ 1146
Query: 810 AIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKIHWMRWGRLGETKKRGGLGFRSF 869
AIP Y MSC+ L +G CD + M++K+WW+ ++ + KIHW+ W ++ KK GG GFR
Sbjct: 1147 AIPTYAMSCFDLTKGLCDEINSMISKWWWSQNDKENKIHWLSWEKMTLPKKLGGPGFRDL 1206
Query: 870 SDFNKALLGKQYWRLLADNNSLMSSILKSRYFPRTSI 906
FN A+L +Q WRLL + +SL + T +
Sbjct: 1207 HLFNMAMLARQAWRLLLNVDSLCGQVFVDEKIEHTGL 1243
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 581 bits (1498), Expect = e-164
Identities = 324/937 (34%), Positives = 506/937 (53%), Gaps = 17/937 (1%)
Query: 12 RGLGNPRAIRALLRLIRIQNPQVVFLMETRLKSDEMERVRINCGFSSGLFVPCDGFGKER 71
+G+G P L L ++ V+FL+ET K + + + GF + + P G
Sbjct: 370 KGIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQG----H 425
Query: 72 ACDIALLWMDSVNLSIRSYSLNHIMGRIEDVESGKYWSITGIYGYPDETNKKKTWDLLRS 131
+ +ALLW DSV LS HI I Y ++ +YG+P ++ + W +
Sbjct: 426 SGGLALLWKDSVRLSNLYQDDRHIDVHISINNINFY--LSRVYGHPCQSERHSLWTHFEN 483
Query: 132 LTPVEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNAVEDCNLLDLGFNGYPFTWS 191
L+ D W+ GDFN+ILSN EK GG R RN V C+L D+ G F+W
Sbjct: 484 LSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWV 543
Query: 192 NGRHGSGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSDHAAISIELDVCLEDAHKKKL 251
RH S + C LDR F + E F ++ L GSDH + + L E +K+
Sbjct: 544 GERH-SHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSL----EKTETRKM 598
Query: 252 HVFRFEKCWADDDRCEAMVRGSWNNATG-----LASKIEAMQSLDSKFKEYITSEIRKEL 306
FRF+K + + V+ WN A L ++ + +K K R +
Sbjct: 599 RPFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRI 658
Query: 307 LEIETQLNNHASWDGSPDNITKFRELEAKHSELLQTEETMWRQRSRATWLKEGDKNSKFF 366
+++ L+ S + T ++ + + + EE W+Q+SR W+KEGD+N++FF
Sbjct: 659 NQLQAALDKAMSSVNRTERRT-ISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFF 717
Query: 367 HAKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPTTVDQTCLVVKDR 426
HA K R +N + IKD+ G+ + G ++ ++F ++ S+ K
Sbjct: 718 HACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPI 777
Query: 427 LSPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGIL 486
++ + + + S EI +AI + KAPGPDGL A F++ W IVG +V+
Sbjct: 778 VTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFF 837
Query: 487 NEGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDE 546
+ IN T I +IPK NP + + +RPI+LCNV+ KI++K + RLK L I+ +
Sbjct: 838 RTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSD 897
Query: 547 EQSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQS 606
Q+AF+ GRL+ DN +IA E H +K + + + MA+K D++KAYDR+EW+F+++ ++
Sbjct: 898 SQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRL 957
Query: 607 MNFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLL 666
F E I I+ + +V+Y +L+NG P P+RG+RQGDPLSPYLFILCA++L+ L+
Sbjct: 958 FGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLI 1017
Query: 667 KKEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVN 726
K + I GIRI P +THL FADD L F +++V Q + V + Y+ SGQ +N
Sbjct: 1018 KNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKIN 1077
Query: 727 LDKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKK 786
+ KS +++ V + + + I++ +YLGLP FGR K+++F+++ ERV K+
Sbjct: 1078 MSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKR 1137
Query: 787 IKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRK 846
W K LS AGKE ++K+VA ++P Y MSC+KLP +E +L FWW + KR+
Sbjct: 1138 TSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKRE 1197
Query: 847 IHWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSILKSRYFPRTSI 906
I W+ W RL +KK GGLGFR + FN ALL KQ WR++ + NSL + I+K+RYF SI
Sbjct: 1198 IPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSI 1257
Query: 907 SITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTV 943
K Y W S++ ++++ + +++G+G+TV
Sbjct: 1258 LDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTV 1294
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 581 bits (1497), Expect = e-164
Identities = 339/957 (35%), Positives = 496/957 (51%), Gaps = 132/957 (13%)
Query: 422 VVKDRLSPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSL 481
VV ++S E F+ E+K+A+D + LKAPGPDG+PA F++ W +VG +V
Sbjct: 637 VVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPAGFYKACWDVVGEKVTVE 696
Query: 482 ALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILP 541
L +L G E N T I LIPK +ANRLK ILP
Sbjct: 697 VLEVLRGGAIPEGWNDTTIVLIPK-------------------------VLANRLKKILP 731
Query: 542 EIMDEEQSAFVQGRLITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVK 601
+++ QSAFV GRLI+DN +IA E H+M+ K G+ G A KLDM+KAYDR+EWSF+
Sbjct: 732 DVISPAQSAFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLH 791
Query: 602 SMLQSMNFPENIINTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANV 661
M+ + F + +N I++C+STV+Y+I +NG+ S F PERGLRQGDPLSPYLF+LCA
Sbjct: 792 DMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEG 851
Query: 662 LSGLLKKEEKDNKIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDAS 721
S LL K E++ ++HGIRI + AP ++HLLFADD L+ RA+ EAQ + ++L Y++ S
Sbjct: 852 FSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECS 911
Query: 722 GQIVNLDKSEVSYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQE 781
GQ++N DKS V +S N + +K + +N++ T+ +YLGLPV GRS+ ++FS+++E
Sbjct: 912 GQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKE 971
Query: 782 RVWKKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASD 841
R+W++I+GWKEK LSRAGKE LIKAVAQ IP + M C++L + CD + M+AK+WW++
Sbjct: 972 RIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWSNQ 1031
Query: 842 EYKRKIHWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSILKSRYF 901
E K+HW+ W +L K GGLGFR FN A+L KQ WRL+ D +SL S +L+++YF
Sbjct: 1032 EKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYF 1091
Query: 902 PRTSISITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVRIFKDNWIP-GTRCTPIQ 960
P K Y WRS+ K +++N W +G+G + I+ D WIP G P+
Sbjct: 1092 PLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRKPM- 1150
Query: 961 RTEGTVDEDAVVADLIVHETRSWDRERIMASFNSFIAKKILSIPISFRLPDDKVTWQWEK 1020
T + V +LI T +WD + + +F I SIP+ + +D + W ++
Sbjct: 1151 -TPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEM-EDVLAWHFDA 1208
Query: 1021 SGEYSVRSGHHLLCENKSKEVAESSSVRG-----------SDIWKQIWNFNGPRSAQNFL 1069
G ++V+S + + +E+ +S G D WK++W P ++FL
Sbjct: 1209 RGCFTVKSAYKV-----QREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFL 1263
Query: 1070 WRLASNILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPL------ 1123
WR+ N L R NL +G+ +D C +C ED HLF C K VW + L
Sbjct: 1264 WRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLEELRSM 1323
Query: 1124 ------GIHIPPNSMCREWMELWLKKDDPLAVQVFGITLWRLWQGRNQLIFKNSPFDPAL 1177
G ++ + CR + + A+ + LW+ W+ RN+ + SP
Sbjct: 1324 LEQQTSGKNVLQSIYCRP------ENERTSAI----VCLWQWWKERNE---EKSP----- 1365
Query: 1178 IAQSAVLLVEEFNLANRKAACHPISRAPTRWCPPQTGTVKINVDAGVFTD-GSTGWGFVA 1236
R C W P VKIN D ++ GWGFV
Sbjct: 1366 ----------------RTGEC-------AVWRRPPLNFVKINTDGAYSSNMKQGGWGFVI 1402
Query: 1237 RDHHGAVLFSATRKEEMMVTPLVAERLALRWCLSWAEGEQFTSLCIETDAEQVVHCLLRR 1296
RD GAVL + + AE +A + A + + +ETD
Sbjct: 1403 RDQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTASERGMSRIELETD----------- 1451
Query: 1297 KKIAAIEFLILDCLDYLSRFSTCSVNFAGRSCNQVAHSLVGLAKTVGNI-CWVGSVP 1352
+ + ++ RSCN+VAH L + + W G P
Sbjct: 1452 ---------------------SMMLRYSPRSCNKVAHELAAYGCNLQTVSSWAGCPP 1487
Score = 98.6 bits (244), Expect = 1e-18
Identities = 66/236 (27%), Positives = 112/236 (46%), Gaps = 7/236 (2%)
Query: 113 IYGYPDETNKKKTWDLLRSLTPVEEDMWLCCGDFNDILSNEEKAGGNIRSFLQLSLSRNA 172
+YG K +TW +R L WL GDFN+IL + EK G +++ + R+A
Sbjct: 396 LYGDAHSETKHRTWTTMRGLIDNPTTPWLMAGDFNEILFSHEKQCGRMKAQSAMDEFRHA 455
Query: 173 VEDCNLLDLGFNGYPFTWSNGRHG-SGRI*CRLDRVFASDEFIKRFSPIQINHLARFGSD 231
+ DC L DLGF G FTW N H G I LDR A+ E+ F ++ + SD
Sbjct: 456 LTDCGLDDLGFEGDAFTWRNHSHSQEGYIREWLDRAVANPEWRAMFPAARVINGDPRHSD 515
Query: 232 HAAISIELDVCLEDAHKKKLH-VFRFEKCWADDDRCEAMVRGSWNNATGLA-----SKIE 285
H + IEL+ + + H FRFE W ++++ + +V+ +W+ + GL + +
Sbjct: 516 HRPVIIELEGKNKGVRGRNGHNDFRFEAAWLEEEKFKEVVKEAWDVSAGLQGLLVHASLA 575
Query: 286 AMQSLDSKFKEYITSEIRKELLEIETQLNNHASWDGSPDNITKFRELEAKHSELLQ 341
+ + S + + ++ K L +++ +L S D + + L + +L Q
Sbjct: 576 GVAAGLSSWSSNVLGDLEKRLKKVKKELETCRRQPISRDQVVREEVLRYRLEKLEQ 631
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,414,145,754
Number of Sequences: 2540612
Number of extensions: 104861084
Number of successful extensions: 213885
Number of sequences better than 10.0: 1388
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 487
Number of HSP's that attempted gapping in prelim test: 209955
Number of HSP's gapped (non-prelim): 2033
length of query: 1363
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1222
effective length of database: 505,134,102
effective search space: 617273872644
effective search space used: 617273872644
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 82 (36.2 bits)
Medicago: description of AC146790.3