BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146760.13 + phase: 0 /pseudo/partial
(612 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD23001.1| putative ATP-dependent RNA helicase [Arabidopsis ... 902 0.0
gb|AAO42134.1| putative DEAD/DEAH box RNA helicase [Arabidopsis ... 901 0.0
ref|XP_470008.1| putative helicase [Oryza sativa (japonica culti... 884 0.0
gb|AAM65637.1| ATP-dependent RNA helicase-like protein [Arabidop... 871 0.0
ref|XP_477035.1| putative DEAD-box RNA helicase DEAD3(i|6753620)... 863 0.0
emb|CAB68195.1| ATP-dependent RNA helicase-like protein [Arabido... 858 0.0
emb|CAB68189.1| ATP-dependent RNA helicase-like protein [Arabido... 848 0.0
gb|AAM47956.1| ATP-dependent RNA helicase-like protein [Arabidop... 676 0.0
dbj|BAD35456.1| putative DEAD-box protein 3 [Oryza sativa (japon... 603 e-171
gb|EAA76736.1| hypothetical protein FG06804.1 [Gibberella zeae P... 592 e-167
emb|CAB88635.1| probable ATP-dependent RNA helicase DED1 [Neuros... 587 e-166
ref|NP_149068.1| PL10 protein [Mus musculus] gi|130256|sp|P16381... 587 e-166
ref|NP_001008986.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-... 586 e-166
emb|CAH89614.1| hypothetical protein [Pongo pygmaeus] 585 e-165
ref|XP_344188.2| PREDICTED: similar to probable ATP-dependent RN... 584 e-165
ref|XP_538003.1| PREDICTED: similar to DEAD-box protein 3 (Helic... 583 e-165
gb|AAH34942.1| DDX3Y protein [Homo sapiens] gi|13514809|ref|NP_0... 582 e-164
ref|XP_228701.3| PREDICTED: similar to RNA helicase [Rattus norv... 581 e-164
emb|CAH65043.1| hypothetical protein [Gallus gallus] 581 e-164
ref|XP_416771.1| PREDICTED: similar to DEAD-box protein 3 (Helic... 581 e-164
>gb|AAD23001.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|15227951|ref|NP_181780.1| DEAD box RNA helicase,
putative [Arabidopsis thaliana] gi|25290840|pir||H84854
probable ATP-dependent RNA helicase [imported] -
Arabidopsis thaliana
Length = 633
Score = 902 bits (2331), Expect = 0.0
Identities = 473/635 (74%), Positives = 516/635 (80%), Gaps = 43/635 (6%)
Query: 1 MRSSWADLAANSAAENAPTPPPSAAAAVANNAANTRPVYVPPHLRNRGPSAPAPAAPAFD 60
M +SWAD+A + EN + + + N+ +RP YVPPHLRNR P+A P AP
Sbjct: 1 MSASWADVADS---EN------TGSGSSNQNSHPSRPAYVPPHLRNR-PAASEPVAPLPA 50
Query: 61 N---------SGSRWAPPPRNDYRGGGGGR--------GGGGYGNRGGGGWDRR------ 97
N SGSRWAP GGGGG G GYG RGGGGW+ R
Sbjct: 51 NDRVGYGGPPSGSRWAPGGSGVGVGGGGGYRADAGRPGSGSGYGGRGGGGWNNRSGGWDR 110
Query: 98 ---EANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEA 154
E NPF + DDSE EQ+NT INFDAYEDIP+ETSG NVPPPVNTFAEIDLGEA
Sbjct: 111 REREVNPF-ENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEA 169
Query: 155 LNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQR 214
LN NIRRCKYVKPTPVQRHAIPI L GRDLMACAQTGSGKTAAFCFPIISGIM Q QR
Sbjct: 170 LNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQR 229
Query: 215 PPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGV 274
P RG RTV PLA++LSPTREL+ QIH+EA+KFSYQTGV+VVVAYGG PINQQLRELERGV
Sbjct: 230 P-RGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGV 288
Query: 275 DILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQ 334
DILVATPGRL DLLERARVS+ MIR+LALDEADRMLDMGFEPQIRKIVEQMDMPP GVRQ
Sbjct: 289 DILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQ 348
Query: 335 TMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHA 394
T+LFSATFP+EIQRLA+DFL+NYIFLAVGRVGSSTDLI QRVE+V +SDKRSHLMDLLHA
Sbjct: 349 TLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHA 408
Query: 395 QRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGN 454
QR NG+QGKQALTLVFVETK+GAD+LE+WLC+N FPAT+IHGDR+QQERE AL++FKSG
Sbjct: 409 QRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGR 468
Query: 455 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTS 514
TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK GLATAFFN+ NTS
Sbjct: 469 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTS 528
Query: 515 MARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSRGGSDY 574
+AR L +LMQEANQEVP WL+R+A+RSSFGGGKNRRS GGRFGGRDFRREGSF G Y
Sbjct: 529 LARPLAELMQEANQEVPEWLTRYASRSSFGGGKNRRS-GGRFGGRDFRREGSFGSGRGGY 587
Query: 575 HGAG---NSGGGYGASGGY-GGGGYGGGYAGNSAG 605
G G GGGYG GGY GGGGYGGGY G S+G
Sbjct: 588 GGGGGGYGGGGGYGGGGGYGGGGGYGGGYGGASSG 622
>gb|AAO42134.1| putative DEAD/DEAH box RNA helicase [Arabidopsis thaliana]
Length = 633
Score = 901 bits (2328), Expect = 0.0
Identities = 472/635 (74%), Positives = 516/635 (80%), Gaps = 43/635 (6%)
Query: 1 MRSSWADLAANSAAENAPTPPPSAAAAVANNAANTRPVYVPPHLRNRGPSAPAPAAPAFD 60
M +SWAD+A + EN + + + N+ +RP YVPPHLRNR P+A P AP
Sbjct: 1 MSASWADVADS---EN------TGSGSSNQNSHPSRPAYVPPHLRNR-PAASEPVAPLPA 50
Query: 61 N---------SGSRWAPPPRNDYRGGGGGR--------GGGGYGNRGGGGWDRR------ 97
N SGSRWAP GGGGG G GYG RGGGGW+ R
Sbjct: 51 NDRVGYGGPPSGSRWAPGGSGVGVGGGGGYRADAGRPGSGSGYGGRGGGGWNNRSGGWDR 110
Query: 98 ---EANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEA 154
E NPF + DDSE EQ+NT INFDAYEDIP+ETSG NVPPPVNTFAEIDLGEA
Sbjct: 111 REREVNPF-ENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEA 169
Query: 155 LNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQR 214
LN NIRRCKYVKPTPVQRHAIPI L GRDLMACAQTGSGKTAAFCFPIISGIM Q QR
Sbjct: 170 LNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQR 229
Query: 215 PPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGV 274
P RG RTV PLA++LSPTREL+ QIH+EA++FSYQTGV+VVVAYGG PINQQLRELERGV
Sbjct: 230 P-RGSRTVYPLAVILSPTRELASQIHDEAKRFSYQTGVKVVVAYGGTPINQQLRELERGV 288
Query: 275 DILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQ 334
DILVATPGRL DLLERARVS+ MIR+LALDEADRMLDMGFEPQIRKIVEQMDMPP GVRQ
Sbjct: 289 DILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQ 348
Query: 335 TMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHA 394
T+LFSATFP+EIQRLA+DFL+NYIFLAVGRVGSSTDLI QRVE+V +SDKRSHLMDLLHA
Sbjct: 349 TLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHA 408
Query: 395 QRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGN 454
QR NG+QGKQALTLVFVETK+GAD+LE+WLC+N FPAT+IHGDR+QQERE AL++FKSG
Sbjct: 409 QRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGR 468
Query: 455 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTS 514
TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK GLATAFFN+ NTS
Sbjct: 469 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTS 528
Query: 515 MARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSRGGSDY 574
+AR L +LMQEANQEVP WL+R+A+RSSFGGGKNRRS GGRFGGRDFRREGSF G Y
Sbjct: 529 LARPLAELMQEANQEVPEWLTRYASRSSFGGGKNRRS-GGRFGGRDFRREGSFGSGRGGY 587
Query: 575 HGAG---NSGGGYGASGGY-GGGGYGGGYAGNSAG 605
G G GGGYG GGY GGGGYGGGY G S+G
Sbjct: 588 GGGGGGYGGGGGYGGGGGYGGGGGYGGGYGGASSG 622
>ref|XP_470008.1| putative helicase [Oryza sativa (japonica cultivar-group)]
gi|41469394|gb|AAS07217.1| putative helicase [Oryza
sativa (japonica cultivar-group)]
Length = 637
Score = 884 bits (2285), Expect = 0.0
Identities = 471/648 (72%), Positives = 516/648 (78%), Gaps = 48/648 (7%)
Query: 1 MRSSWADLAANSAAENAPTPPPSAAAAVAN--NAANTRPVYVPPHLRNRGPS-----APA 53
MRSSWAD AN A E+AP +A VAN N+ TR YVPPHLR + P+ APA
Sbjct: 1 MRSSWADSVAN-AEESAPATG-AAPTPVANHQNSRPTRSAYVPPHLRGQAPTTTAAPAPA 58
Query: 54 PAAPAFDNS-------------GSRWAPPPRNDYRG------------GGGGRGGGGYGN 88
P A S GSRWA P D G GGGG GGGG+ +
Sbjct: 59 PGPAAVQPSASVQPSGYAAIVGGSRWAGPASGDGTGAVGGPRQSVGGRGGGGGGGGGWNS 118
Query: 89 RGGGGWDRR--EANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPVNTF 146
R G WDRR E NPFA+ + E + NTGINFDAYEDIPVETSG +VPPPVNTF
Sbjct: 119 RPG--WDRRDREPNPFANSEAEEATEVDFDTANTGINFDAYEDIPVETSGHDVPPPVNTF 176
Query: 147 AEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGI 206
AEIDLG+ALN+NIRRCKYVKPTPVQR+AIPIS+ GRDLMACAQTGSGKTAAFCFPIISGI
Sbjct: 177 AEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGI 236
Query: 207 MTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQ 266
M+ +P QRP RG RT PLAL+LSPTRELS+QIHEEARKF+YQTGVRVVVAYGGAPI+QQ
Sbjct: 237 MSSRPPQRP-RGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQQ 295
Query: 267 LRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMD 326
LRELERGV+ILVATPGRL+DLLERARVSL M++YLALDEADRMLDMGFEPQIRKIVEQMD
Sbjct: 296 LRELERGVEILVATPGRLMDLLERARVSLQMVKYLALDEADRMLDMGFEPQIRKIVEQMD 355
Query: 327 MPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRS 386
MPP GVRQTMLFSATFPKEIQR+ASDFL++YIFLAVGRVGSSTDLI QRVE+V E+DKRS
Sbjct: 356 MPPRGVRQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIAQRVEFVLEADKRS 415
Query: 387 HLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAA 446
+LMDLLHAQ+ANG GKQALTLVFVETK+GADALE+WL N FPAT+IHGDR+QQERE A
Sbjct: 416 YLMDLLHAQKANGTHGKQALTLVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREYA 475
Query: 447 LRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATA 506
LRSFKSG TPILVATDVAARGLDIPHVAHV+NFDLPNDIDDYVHRIGRTGRAGK GLATA
Sbjct: 476 LRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATA 535
Query: 507 FFNENNTSMARSLQDLMQEANQEVPAWLSRFAARSSF--GGGKNRRSGGGRFGGRDFRRE 564
FFNE N S+AR L +LMQEANQEVP WL R++ARSSF GGG+NRRSGG RFGGRDFRR+
Sbjct: 536 FFNEGNLSLARPLCELMQEANQEVPQWLERYSARSSFGGGGGRNRRSGGARFGGRDFRRD 595
Query: 565 GSFSRGGSDYHGAGNSGGGYGASGGYGGGGYGGGYAGNSAGPXVTTAW 612
GG G G GGGYG G GGGGYGGGY G G T++W
Sbjct: 596 NRGGGGG----GYGGGGGGYGGGGYGGGGGYGGGYGG---GQGSTSSW 636
>gb|AAM65637.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|42572719|ref|NP_974455.1| DEAD box RNA helicase,
putative (RH11) [Arabidopsis thaliana]
gi|18410973|ref|NP_567067.1| DEAD box RNA helicase,
putative (RH11) [Arabidopsis thaliana]
Length = 612
Score = 871 bits (2250), Expect = 0.0
Identities = 463/641 (72%), Positives = 505/641 (78%), Gaps = 59/641 (9%)
Query: 1 MRSSWADLAANSAAENAPTPPPSAAAAVANNAANTRPVYVPPHLRNRGPSAPAPAAPAFD 60
M +SWAD+A + A + PP YVPPHLRNR PS P AAP
Sbjct: 1 MSASWADVADSEKAVSQSKPP-----------------YVPPHLRNR-PSEPV-AAPLPQ 41
Query: 61 N---------SGSRWAPPP-----------RND-------YRGGGGGRGGGGYGNRGGGG 93
N +GSRWAPP RND Y GGGG GGGG+ NR GG
Sbjct: 42 NDHAGYGGQPAGSRWAPPSSGGGGASGGGYRNDGGRTGYGYGAGGGGGGGGGWNNRSGG- 100
Query: 94 WDRRE--ANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDL 151
WDRRE NPF D + E T EQENTGINFDAYEDIPVETSGG+VPPPVNTFA+IDL
Sbjct: 101 WDRREREVNPFGDDAELEPVFT--EQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDL 158
Query: 152 GEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQP 211
G+ALN NIRRCKYV+PTPVQRHAIPI L RDLMACAQTGSGKTAAFCFPIISGIM Q
Sbjct: 159 GDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQH 218
Query: 212 AQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELE 271
+RP RG R V P A++LSPTREL+ QIH+EA+KFSYQTGV+VVVAYGG PI+QQLRELE
Sbjct: 219 VERP-RGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELE 277
Query: 272 RGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAG 331
RG DILVATPGRL DLLERARVS+ MIR+LALDEADRMLDMGFEPQIRKIVEQMDMPP G
Sbjct: 278 RGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 337
Query: 332 VRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDL 391
VRQTMLFSATFP +IQRLA+DF+SNYIFLAVGRVGSSTDLI QRVE+VQESDKRSHLMDL
Sbjct: 338 VRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDL 397
Query: 392 LHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFK 451
LHAQR Q KQ+LTLVFVETK+GAD LE+WLC+N FPAT+IHGDR+QQERE ALRSFK
Sbjct: 398 LHAQRE--TQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFK 455
Query: 452 SGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNEN 511
+G TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK G+ATAFFNEN
Sbjct: 456 TGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNEN 515
Query: 512 NTSMARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSRGG 571
N +ARSL +LMQEANQEVP WL+R+A+R+SFGGGK R GGRFGGRDFRREGS+SRGG
Sbjct: 516 NAQLARSLAELMQEANQEVPEWLTRYASRASFGGGKKR--SGGRFGGRDFRREGSYSRGG 573
Query: 572 SDYHGAGNSGGGYGASGGYGGGGYGGGYAGNSAGPXVTTAW 612
G G G Y GGYGGGGYGG +G G VT+AW
Sbjct: 574 GG--GGGGGGSDYYGGGGYGGGGYGGAPSG-GYGAGVTSAW 611
>ref|XP_477035.1| putative DEAD-box RNA helicase DEAD3(i|6753620) [Oryza sativa
(japonica cultivar-group)] gi|34393986|dbj|BAC83834.1|
putative DEAD-box RNA helicase DEAD3 [Oryza sativa
(japonica cultivar-group)]
Length = 638
Score = 863 bits (2230), Expect = 0.0
Identities = 467/649 (71%), Positives = 510/649 (77%), Gaps = 49/649 (7%)
Query: 1 MRSSWADLAANSAAENAPTPPPSAAAAVANNAANTRPVYVPPHLRNRG-----------P 49
MRSSWAD AAN A E+AP AAAA N+ R YVPPHLR + P
Sbjct: 1 MRSSWADSAAN-AEESAP-----AAAANHGNSRLPRSSYVPPHLRGQAAPAAPAQAGALP 54
Query: 50 SAPAPAAPAFDN----SGSRWAPPPRNDYRGGGG------------GRGGGGYGNRGG-- 91
SA A A P+ G RWA GGGG GRGGGG G G
Sbjct: 55 SAAAAAQPSVGQPGVVGGPRWAGIVNGGGGGGGGSVGGSRQGFGAGGRGGGGGGGGGAWN 114
Query: 92 ---GGWDRR--EANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPVNTF 146
GGWDRR E +PFA+ + +E E ENTGINF+AYEDIPVETSG +VPPP NTF
Sbjct: 115 SRPGGWDRRDREPDPFANSEAAE---VDFEGENTGINFEAYEDIPVETSGHDVPPPANTF 171
Query: 147 AEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGI 206
AEIDLG+ALN+NIRRCKYVKPTPVQR+AIPIS+ GRDLMACAQTGSGKTAAFCFPIISGI
Sbjct: 172 AEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGI 231
Query: 207 MTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQ 266
M +P R RG RT PLAL+LSPTRELS+QIHEEARKF+YQTGV+VVVAYGGAPI QQ
Sbjct: 232 MRSRPPPRS-RGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQ 290
Query: 267 LRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMD 326
LRELERGV+ILVATPGRL+DLLERARVSL MI+YLALDEADRMLDMGFEPQIRKIVEQMD
Sbjct: 291 LRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMD 350
Query: 327 MPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRS 386
MPP G RQTMLFSATFPKEIQR+ASDFL++YIFLAVGRVGSSTDLI QRVE+V ++DKRS
Sbjct: 351 MPPRGERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRS 410
Query: 387 HLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAA 446
+LMDLLHAQRANG GKQALTLVFVETK+GADALE+WL N FPAT+IHGDR+QQERE A
Sbjct: 411 YLMDLLHAQRANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYA 470
Query: 447 LRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATA 506
LRSFKSG TPILVATDVAARGLDIPHVAHV+NFDLPNDIDDYVHRIGRTGRAGK GLATA
Sbjct: 471 LRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATA 530
Query: 507 FFNENNTSMARSLQDLMQEANQEVPAWLSRFAARSSF--GGGKNRRSGGG-RFGGRDFRR 563
FFNE+NT +AR L +LMQEANQEVP WL R+AARSSF GGG+NRRSGGG RFGGRDFRR
Sbjct: 531 FFNESNTPLARPLSELMQEANQEVPQWLERYAARSSFGGGGGRNRRSGGGARFGGRDFRR 590
Query: 564 EGSFSRGGSDYHGAGNSGGGYGASGGYGGGGYGGGYAGNSAGPXVTTAW 612
+ GG G G GGGYG GG GGGGYGGG + G ++AW
Sbjct: 591 DRGSGGGGYGGGGGGYGGGGYG--GGGGGGGYGGGSSYGGGGQGFSSAW 637
>emb|CAB68195.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|21593710|gb|AAM65677.1| ATP-dependent RNA
helicase-like protein [Arabidopsis thaliana]
gi|27363456|gb|AAO11647.1| At3g58570/F14P22_160
[Arabidopsis thaliana] gi|15146288|gb|AAK83627.1|
AT3g58570/F14P22_160 [Arabidopsis thaliana]
gi|15231074|ref|NP_191416.1| DEAD box RNA helicase,
putative [Arabidopsis thaliana] gi|11267531|pir||T45677
ATP-dependent RNA helicase-like protein - Arabidopsis
thaliana
Length = 646
Score = 858 bits (2216), Expect = 0.0
Identities = 460/630 (73%), Positives = 507/630 (80%), Gaps = 41/630 (6%)
Query: 3 SSWADLAANSAAENAPTPPPSAAAAVANNAANTRPVYVPPHLRNRGPSAPAPA-APAFDN 61
+SWAD++ + A PS + + T YVPPHLR+R PS+ A +P ++
Sbjct: 4 NSWADVSESERA-------PSGGGWGYSRPSRTN--YVPPHLRSRTPSSEFVAPSPGNND 54
Query: 62 SGSRWAPPPRNDYRGGGGGRGGGGYGNRGG---------GGWDRR--EANPFADQDDSEE 110
G RG G G G GYG RGG GGWDRR E NPF + +++
Sbjct: 55 RGGYGGANSGYGGRGQGYGGRGSGYGGRGGPVGGWNARSGGWDRRDTETNPFGNDGNADP 114
Query: 111 PVTQEEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPV 170
V EQENT INF+AYEDIP+ETSG NVPPPVNTFAEIDLGEALN NI+RCKYVKPTPV
Sbjct: 115 AVN--EQENTVINFEAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPV 172
Query: 171 QRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLS 230
QR+AIPI GRDLMACAQTGSGKTAAFCFPIISGIM Q +RP RGVR V PLA++LS
Sbjct: 173 QRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERP-RGVRGVYPLAVILS 231
Query: 231 PTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER 290
PTREL+ QIH+EARKFSYQTGV+VVVAYGG P+NQQ+RELERGVDILVATPGRL DLLER
Sbjct: 232 PTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLER 291
Query: 291 ARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLA 350
RVSL M+R+LALDEADRMLDMGFEPQIRKIV+QMDMPP GVRQTMLFSATFP+EIQRLA
Sbjct: 292 GRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLA 351
Query: 351 SDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVF 410
SDFLSNYIFLAVGRVGSSTDLI QRVE+V +SDKRSHLMDLLHAQR NG QGKQALTLVF
Sbjct: 352 SDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVF 411
Query: 411 VETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDI 470
VETKKGAD+LE+WLC+N FPATTIHGDRSQQERE ALRSFK+G TPILVATDVAARGLDI
Sbjct: 412 VETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDI 471
Query: 471 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEV 530
PHVAHVVNFDLPNDIDDYVHRIGRTGRAG GLATAFFN+NNT+MA+ L +LMQEANQEV
Sbjct: 472 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEV 531
Query: 531 PAWLSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSR--GGSDYHGAGNS-----GGG 583
P WL+R+A+R+SFGGGKNRRS GGRFGGRDFRRE SFSR GG+DY+G G GGG
Sbjct: 532 PDWLTRYASRASFGGGKNRRS-GGRFGGRDFRRE-SFSRGGGGADYYGGGGGYGGVPGGG 589
Query: 584 YGA-SGGYG---GGGY----GGGYAGNSAG 605
YGA GGYG GGGY GGGYA G
Sbjct: 590 YGAMPGGYGPVPGGGYGNVPGGGYAPYGRG 619
>emb|CAB68189.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|11267530|pir||T45671 ATP-dependent RNA helicase-like
protein - Arabidopsis thaliana
Length = 603
Score = 848 bits (2192), Expect = 0.0
Identities = 455/641 (70%), Positives = 496/641 (76%), Gaps = 68/641 (10%)
Query: 1 MRSSWADLAANSAAENAPTPPPSAAAAVANNAANTRPVYVPPHLRNRGPSAPAPAAPAFD 60
M +SWAD+A + A + PP YVPPHLRNR PS P AAP
Sbjct: 1 MSASWADVADSEKAVSQSKPP-----------------YVPPHLRNR-PSEPV-AAPLPQ 41
Query: 61 N---------SGSRWAPPP-----------RND-------YRGGGGGRGGGGYGNRGGGG 93
N +GSRWAPP RND Y GGGG GGGG+ NR GG
Sbjct: 42 NDHAGYGGQPAGSRWAPPSSGGGGASGGGYRNDGGRTGYGYGAGGGGGGGGGWNNRSGG- 100
Query: 94 WDRRE--ANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDL 151
WDRRE NPF D + E T EQENTGINFDAYEDIPVETSGG+VPPPVNTFA+IDL
Sbjct: 101 WDRREREVNPFGDDAELEPVFT--EQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDL 158
Query: 152 GEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQP 211
G+ALN NIRRCKYV+PTPVQRHAIPI L RDLMACAQTGSGKTAAFCFPIISGIM Q
Sbjct: 159 GDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQH 218
Query: 212 AQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELE 271
+RP RG R V P A++LSPTREL+ QIH+EA+KFSYQTGV+VVVAYGG PI+QQLRELE
Sbjct: 219 VERP-RGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELE 277
Query: 272 RGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAG 331
RG DILVATPGRL DLLERARVS+ MIR+LALDEADRMLDMGFEPQIRKIVEQMDMPP G
Sbjct: 278 RGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 337
Query: 332 VRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDL 391
VRQTMLFSATFP +IQRLA+DF+SNYIFLAVGRVGSSTDLI QRVE+VQESDKRSHLMDL
Sbjct: 338 VRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDL 397
Query: 392 LHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFK 451
LHAQR Q K TK+GAD LE+WLC+N FPAT+IHGDR+QQERE ALRSFK
Sbjct: 398 LHAQRE--TQDK---------TKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFK 446
Query: 452 SGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNEN 511
+G TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK G+ATAFFNEN
Sbjct: 447 TGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNEN 506
Query: 512 NTSMARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSRGG 571
N +ARSL +LMQEANQEVP WL+R+A+R+SFGGGK R GGRFGGRDFRREGS+SRGG
Sbjct: 507 NAQLARSLAELMQEANQEVPEWLTRYASRASFGGGKKR--SGGRFGGRDFRREGSYSRGG 564
Query: 572 SDYHGAGNSGGGYGASGGYGGGGYGGGYAGNSAGPXVTTAW 612
G G G Y GGYGGGGYGG +G G VT+AW
Sbjct: 565 GG--GGGGGGSDYYGGGGYGGGGYGGAPSG-GYGAGVTSAW 602
>gb|AAM47956.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|17064740|gb|AAL32524.1| ATP-dependent RNA
helicase-like protein [Arabidopsis thaliana]
Length = 421
Score = 676 bits (1743), Expect = 0.0
Identities = 343/428 (80%), Positives = 374/428 (87%), Gaps = 8/428 (1%)
Query: 185 MACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEAR 244
MACAQTGSGKTAAFCFPIISGIM Q +RP RG R V P A++LSPTREL+ QIH+EA+
Sbjct: 1 MACAQTGSGKTAAFCFPIISGIMKDQHVERP-RGSRVVYPFAVILSPTRELACQIHDEAK 59
Query: 245 KFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALD 304
KFSYQTGV+VVVAYGG PI+QQLRELERG DILVATPGRL DLLERARVS+ MIR+LALD
Sbjct: 60 KFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALD 119
Query: 305 EADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGR 364
EADRMLDMGFEPQIRKIVEQMDMPP GVRQTMLFSATFP +IQRLA+DF+SNYIFLAVGR
Sbjct: 120 EADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGR 179
Query: 365 VGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWL 424
VGSSTDLI QRVE+VQESDKRSHLMDLLHAQR Q KQ+LTLVFVETK+GAD LE+WL
Sbjct: 180 VGSSTDLITQRVEFVQESDKRSHLMDLLHAQRE--TQDKQSLTLVFVETKRGADTLENWL 237
Query: 425 CLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPND 484
C+N FPAT+IHGDR+QQERE ALRSFK+G TPILVATDVAARGLDIPHVAHVVNFDLPND
Sbjct: 238 CMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPND 297
Query: 485 IDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPAWLSRFAARSSFG 544
IDDYVHRIGRTGRAGK G+ATAFFNENN +ARSL +LMQEANQEVP WL+R+A+R+SFG
Sbjct: 298 IDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYASRASFG 357
Query: 545 GGKNRRSGGGRFGGRDFRREGSFSRGGSDYHGAGNSGGGYGASGGYGGGGYGGGYAGNSA 604
GGK R GGRFGGRDFRREGS+SRGG G G G Y GGYGGGGYGG +G
Sbjct: 358 GGKKR--SGGRFGGRDFRREGSYSRGGGG--GGGGGGSDYYGGGGYGGGGYGGAPSG-GY 412
Query: 605 GPXVTTAW 612
G VT+AW
Sbjct: 413 GAGVTSAW 420
>dbj|BAD35456.1| putative DEAD-box protein 3 [Oryza sativa (japonica
cultivar-group)]
Length = 602
Score = 603 bits (1555), Expect = e-171
Identities = 326/554 (58%), Positives = 395/554 (70%), Gaps = 32/554 (5%)
Query: 79 GGRGGGGYGNRGGGGWDR----REANPFADQDDSEEPVTQEEQENTGINF------DAYE 128
GG GGG GGG W ++ A V + + G+ D Y
Sbjct: 14 GGEPGGG----GGGAWSTVSRSGRSSYSAGGGVGGGKVGELAEGLAGVEIGGERRLDKY- 68
Query: 129 DIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACA 188
DIPVE SG +VPPP + F L EA+ +N+ RC Y PTPVQR+++PI+L GRDLMACA
Sbjct: 69 DIPVEVSGEDVPPPADGFEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACA 128
Query: 189 QTGSGKTAAFCFPIISGIMTGQPA-----QRPPRGVRTVCPLALVLSPTRELSMQIHEEA 243
QTGSGKTAAFC P++SG++ + +R P ALVL+PTREL+ QI+EEA
Sbjct: 129 QTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQINEEA 188
Query: 244 RKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLAL 303
+KFS+QTG+RVVVAYGG P+ QLR+LERG DILVATPGRLVD++ER++VSL I+YL +
Sbjct: 189 KKFSFQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVM 248
Query: 304 DEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVG 363
DEADRMLDMGFEPQIRKIVE+M+MP VRQTMLFSATFP EIQRLASDFLSNYIF+ VG
Sbjct: 249 DEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVG 308
Query: 364 RVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGK--QALTLVFVETKKGADALE 421
RVGSSTDLI Q+VE + + +KR +L+DLL Q K Q LTLVFVETK+ AD+L
Sbjct: 309 RVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLR 368
Query: 422 HWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDL 481
+WL FPAT IHGDR+QQERE+ALRSFK+G TPI+VATDVA+RGLD+P+VAHV+N+DL
Sbjct: 369 YWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDL 428
Query: 482 PNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPAWLSRFAARS 541
P I+DYVHRIGRTGRAGK G ATAFF E++ S+A+ L +LM EA Q+VP WL ++A R
Sbjct: 429 PKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLELMTEAKQDVPDWLVQYAERP 488
Query: 542 SFG----GGKNRRSGGG--RFGGRDFRR--EGSFS--RGGSDYHGAGNSGGGYGASGGYG 591
+G GG+NRRSGGG RF GRDFR+ G +S GG Y G G GG G GGY
Sbjct: 489 YYGGSSYGGRNRRSGGGGNRFAGRDFRQGSGGGYSGGGGGGGYSGGGGGGGYSGGGGGYS 548
Query: 592 GGGYGGGYAGNSAG 605
GGG GGGY+ G
Sbjct: 549 GGGRGGGYSRGGRG 562
>gb|EAA76736.1| hypothetical protein FG06804.1 [Gibberella zeae PH-1]
gi|46124853|ref|XP_386980.1| hypothetical protein
FG06804.1 [Gibberella zeae PH-1]
Length = 675
Score = 592 bits (1525), Expect = e-167
Identities = 334/656 (50%), Positives = 409/656 (61%), Gaps = 89/656 (13%)
Query: 39 YVPPHLRNRG---PSAPAPAAPAFDNSGSRWAPPP------------------------- 70
Y+PPH+R RG P+ P P N G A P
Sbjct: 26 YIPPHMRGRGGPPPAGPQAGGPPVMNGGPPAAAPGPNGIGNSAWANQNYGARQNNWSNDV 85
Query: 71 -----RNDYRGGGGGRGGG--GYGN-------------RGGGGWDRRE-------ANPFA 103
N+ RGG GGRGGG G GN RG G R+ ANP
Sbjct: 86 PTYQGNNNRRGGWGGRGGGYSGGGNFDGHSGGGGAPTARGSGDGQWRDGKHIPGPANPRV 145
Query: 104 DQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCK 163
+++ +++TGINF+ Y+DIPVE SG +VP PV+ F L E L +NI
Sbjct: 146 ERELFGVTAEDPSKQHTGINFEKYDDIPVEASGTDVPEPVHQFTTPPLDEHLCRNIELAH 205
Query: 164 YVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGV---- 219
Y PTPVQ+++IPI GGRDLMACAQTGSGKT F FPI+S P+ P
Sbjct: 206 YKVPTPVQKYSIPIVSGGRDLMACAQTGSGKTGGFLFPILSQAFINGPSAVPANAAGQFG 265
Query: 220 --RTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDIL 277
R P +L+L+PTREL QI +E+RKF+Y++ VR V YGGA I QLR++ERG D+L
Sbjct: 266 RQRKAYPTSLILAPTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLL 325
Query: 278 VATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTML 337
VATPGRLVDL+ER R+SL I+YL LDEADRMLDMGFEPQIR+IVE DMP RQT++
Sbjct: 326 VATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPQVQDRQTLM 385
Query: 338 FSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRA 397
FSATFP++IQ LA DFL +YIFL+VGRVGS+++ I Q+VEYV++ DKRS L+D+LH+ A
Sbjct: 386 FSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHS-HA 444
Query: 398 NGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPI 457
NG LTL+FVETK+ AD+L +L NFPAT+IHGDR+Q+ERE AL F++G PI
Sbjct: 445 NG------LTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPI 498
Query: 458 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMAR 517
LVAT VAARGLDIPHV HV+N+DLP D+DDYVHRIGRTGRAG G+ATAFFN N + R
Sbjct: 499 LVATAVAARGLDIPHVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVR 558
Query: 518 SLQDLMQEANQEVPAWLSRFAARSSFGG---GKNRRSGGGRFGG-RDFRREGSFSRGGSD 573
L DL++EANQEVPA+L A SSFGG G R GGGR G RDFR+ G GG++
Sbjct: 559 ELMDLLKEANQEVPAFLETIARESSFGGGGRGGRSRGGGGRGGATRDFRKFGGGGFGGNN 618
Query: 574 ----------------YHGAGNSGGGYGASGGYGGG-GYGGGYAGNSAGPXVTTAW 612
+ G G GYG GYGGG GYGGG GN +GP ++W
Sbjct: 619 NGGGGGFNNAGSQGAGFSAGGGGGAGYGGGAGYGGGAGYGGGGYGNPSGPGAQSSW 674
>emb|CAB88635.1| probable ATP-dependent RNA helicase DED1 [Neurospora crassa]
gi|11267519|pir||T48796 probable ATP-dependent RNA
helicase DED1 [imported] - Neurospora crassa
Length = 688
Score = 587 bits (1514), Expect = e-166
Identities = 329/609 (54%), Positives = 402/609 (65%), Gaps = 40/609 (6%)
Query: 21 PPSAAAAVANNAA---NTRPVYVPPHLRNRGPSAPAPAAPAFDNS-GSRWAPP-PR---- 71
PP A NN+A N P P+ P P F+ G+ W P P+
Sbjct: 48 PPMAGPNGLNNSAWAGNNNYDARGPGGGGNWPAPGGPPGPGFEGQQGAGWGGPRPQGGFN 107
Query: 72 -NDYRGGGG-------GRGGGGYGNRGGGGWDRRE-------ANPFADQDDSEEPVTQEE 116
N YRG G G GGG + NRG G R+ ANP +++ P +
Sbjct: 108 PNAYRGNAGAGAGAGAGGGGGSFSNRGSGDGQWRDGKHIPGPANPRVERELFGTPDDPSK 167
Query: 117 QENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIP 176
Q +TGINF+ Y+DIPVE SG NVP PV TF+ L L NI+ +Y PTPVQ+++IP
Sbjct: 168 Q-HTGINFEKYDDIPVEASGDNVPEPVLTFSNPPLDNHLISNIQLARYNVPTPVQKYSIP 226
Query: 177 ISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGV------RTVCPLALVLS 230
I +GGRDLMACAQTGSGKT F FPI+S P+ P R P AL+L+
Sbjct: 227 IVMGGRDLMACAQTGSGKTGGFLFPILSQSFHTGPSPIPASAAGAYGRQRKAYPTALILA 286
Query: 231 PTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER 290
PTREL QI++EARKF+Y++ VR V YGGA I QLR++ERG D+LVATPGRLVDL+ER
Sbjct: 287 PTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER 346
Query: 291 ARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLA 350
R+SL I+YL LDEADRMLDMGFEPQIR+IVE DMP RQT++FSATFP++IQ LA
Sbjct: 347 GRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPKVNDRQTLMFSATFPRDIQILA 406
Query: 351 SDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVF 410
DFL +YIFL+VGRVGS+++ I Q+VEYV++ DKRS L+D+LH LTL+F
Sbjct: 407 RDFLKDYIFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHAG-------GLTLIF 459
Query: 411 VETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDI 470
VETK+ AD+L +L NFPAT+IHGDR+Q+ERE AL F++G PILVAT VAARGLDI
Sbjct: 460 VETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDI 519
Query: 471 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEV 530
P+V HV+N+DLP DIDDYVHRIGRTGRAG G+ATAFFN N + R L +L++EANQEV
Sbjct: 520 PNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELLELLKEANQEV 579
Query: 531 PAWLSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSR-GGSDYHGAGNSGGGYGASGG 589
PA+L A SSFGGG+ R GGGR GGR + + + GGS G G GG ASGG
Sbjct: 580 PAFLETIARESSFGGGRGGR-GGGRGGGRGRTQTADYRKFGGSGGGGFGGGFGGAPASGG 638
Query: 590 YGGGGYGGG 598
YGGGGYGGG
Sbjct: 639 YGGGGYGGG 647
>ref|NP_149068.1| PL10 protein [Mus musculus] gi|130256|sp|P16381|PL10_MOUSE Putative
ATP-dependent RNA helicase PL10
gi|26325502|dbj|BAC26505.1| unnamed protein product [Mus
musculus] gi|200389|gb|AAA39942.1| PL10 protein
Length = 660
Score = 587 bits (1513), Expect = e-166
Identities = 331/630 (52%), Positives = 408/630 (64%), Gaps = 72/630 (11%)
Query: 39 YVPPHLRNRGPSAPAPAAPAF-DNSGSRWAPPP--------RNDYR---------GGGGG 80
Y+PPHLRNR AA AF D GSRW+ R+D R GG G
Sbjct: 38 YIPPHLRNR------EAAKAFYDKDGSRWSKDKDAYSSFGSRSDTRAKSSFFSDRGGSGS 91
Query: 81 RGG------------GGYGNRGGGGWDRREANPF----ADQDDSEEPVTQEEQ------- 117
RG G G R G G R N AD+DD +P+ E+
Sbjct: 92 RGRFDERGRSDYESVGSRGGRSGFGKFERGGNSRWCDKADEDDWSKPLPPSERLEQELFS 151
Query: 118 -ENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIP 176
NTGINF+ Y+DIPVE +G N PP + +F+++++GE + NI +Y +PTPVQ+HAIP
Sbjct: 152 GGNTGINFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIP 211
Query: 177 ISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQ-------RPPRGVRTVCPLALVL 229
I RDLMACAQTGSGKTAAF PI+S I T P + G R P++LVL
Sbjct: 212 IIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVL 271
Query: 230 SPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLE 289
+PTREL++QI+EEARKFSY++ VR V YGGA I QQ+R+LERG +LVATPGRLVD++E
Sbjct: 272 APTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME 331
Query: 290 RARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRL 349
R ++ L +YL LDEADRMLDMGFEPQIR+IVEQ MPP GVR TM+FSATFPKEIQ L
Sbjct: 332 RGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQML 391
Query: 350 ASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLV 409
A DFL YIFLAVGRVGS+++ I Q+V +V+E+DKRS L+DLL+A GK +L LV
Sbjct: 392 ARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNA------TGKDSLILV 445
Query: 410 FVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLD 469
FVETKKGAD+LE +L + T+IHGDRSQ++RE AL F+SG +PILVAT VAARGLD
Sbjct: 446 FVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLD 505
Query: 470 IPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQE 529
I +V HV+NFDLP+DI++YVHRIGRTGR G GLAT+FFNE N ++ + L DL+ EA QE
Sbjct: 506 ISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 565
Query: 530 VPAWLSRFAARSSFGGGKNRRSG---GGRFGGRDFRREGSFSRGGSDYHGAGNS---GGG 583
VP+WL A + GG RS G FG RD+R+ S A NS GG
Sbjct: 566 VPSWLENMAFEHHYKGGSRGRSKSRFSGGFGARDYRQSSGASSSSFSSGRASNSRSGGGS 625
Query: 584 YGASGGYGGGGYGG-----GYAGNSAGPXV 608
+G+S G+GGG YGG GY GN + V
Sbjct: 626 HGSSRGFGGGSYGGFYNSDGYGGNYSSQGV 655
>ref|NP_001008986.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Pan
troglodytes] gi|48728366|gb|AAT46349.1| DDX3Y [Pan
troglodytes] gi|51315848|sp|Q6GVM6|DDX3Y_PANTR DEAD-box
protein 3, Y-chromosomal
Length = 660
Score = 586 bits (1511), Expect = e-166
Identities = 327/618 (52%), Positives = 404/618 (64%), Gaps = 60/618 (9%)
Query: 39 YVPPHLRNRGPSA--------------PAPAAPAFDNSGSRWAPPPRNDYRGGGGGRGGG 84
Y+PPHLRNR S A +F + SR P ++ G GR
Sbjct: 38 YIPPHLRNREASKGFHDKDSSGWSCSKDKDAYNSFGSRDSRGKPGYFSERGSGSRGRFDD 97
Query: 85 -------GYGNRGGGGWDRREANPFA------DQDDSEEPVTQEEQ--------ENTGIN 123
G GNR G+ R E N + D+DD +P+ E+ NTGIN
Sbjct: 98 RGRSDYDGIGNRDRPGFGRFERNGHSRWCDKSDEDDWSKPLPPSERLEQELFSGGNTGIN 157
Query: 124 FDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRD 183
F+ Y+DIPVE +G N PP + F +ID+GE + NI+ +Y +PTPVQ+HAIPI G RD
Sbjct: 158 FEKYDDIPVEATGSNCPPHIENFGDIDMGEIIMGNIQLTRYTRPTPVQKHAIPIIKGKRD 217
Query: 184 LMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPR-------GVRTVCPLALVLSPTRELS 236
LMACAQTGSGKTAAF PI+S I T P + G R P++LVL+PTREL+
Sbjct: 218 LMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELA 277
Query: 237 MQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLS 296
+QI+EEARKFSY++ VR V YGGA I QQ+R+LERG +LVATPGRLVD++ER ++ L
Sbjct: 278 VQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLD 337
Query: 297 MIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSN 356
+YL LDEADRMLDMGFEPQIR+IVEQ MPP GVR TM+FSATFPKEIQ LA DFL
Sbjct: 338 FCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDE 397
Query: 357 YIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKG 416
YIFLAVGRVGS+++ I Q+V +V++ DKRS L+D+L G G +LTLVFVETKKG
Sbjct: 398 YIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDIL------GAAGTDSLTLVFVETKKG 451
Query: 417 ADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHV 476
AD+LE +L + T+IHGDRSQ++RE AL F+SG +PILVAT VAARGLDI +V HV
Sbjct: 452 ADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHV 511
Query: 477 VNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPAWLSR 536
+NFDLP+DI++YVHRIGRTGR G GLAT+FFNE N ++ + L DL+ EA QEVP+WL
Sbjct: 512 INFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDLLVEAKQEVPSWLEN 571
Query: 537 FAARSSFGGGKNRRSGGGR----FGGRDFRR-EGSFSRGGSDYHGAG--NSGGGYGASGG 589
A + GG RS R FG RD+R+ GS S G G+ + GGGYG S G
Sbjct: 572 MAYEHQYKGGSRGRSKSNRFSGGFGARDYRQSSGSSSSGFGASRGSSSRSGGGGYGNSRG 631
Query: 590 YGGGGYGG-----GYAGN 602
+GGGGYGG GY GN
Sbjct: 632 FGGGGYGGFYNSDGYGGN 649
>emb|CAH89614.1| hypothetical protein [Pongo pygmaeus]
Length = 658
Score = 585 bits (1507), Expect = e-165
Identities = 327/616 (53%), Positives = 407/616 (65%), Gaps = 58/616 (9%)
Query: 39 YVPPHLRNRGPS-----------APAPAAPAFDNSGSRWAPPPRNDYRGGGGGRGG---- 83
Y+PPHLRNR S + + A+ + GSR + + G G G
Sbjct: 38 YIPPHLRNREASKGFHDKDSSGWSCSKDKDAYSSFGSRDSRGKSGYFSERGSGSRGRFDD 97
Query: 84 ------GGYGNRGGGGWDRREANPFA------DQDDSEEPVTQEEQ--------ENTGIN 123
G GNR G+ R E + + D+DD +P+ E+ NTGIN
Sbjct: 98 RGRSDYDGIGNRDRPGFGRFERSGHSRWCDKSDEDDWSKPLPPSERLEQELFSGGNTGIN 157
Query: 124 FDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRD 183
F+ Y+DIPVE +G N PP + F++ID+GE + NI +Y +PTPVQ+HAIPI G RD
Sbjct: 158 FEKYDDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRD 217
Query: 184 LMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPR-------GVRTVCPLALVLSPTRELS 236
LMACAQTGSGKTAAF PI+S I T P + G R P++LVL+PTREL+
Sbjct: 218 LMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELA 277
Query: 237 MQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLS 296
+QI+EEARKFSY++ VR V YGGA I QQ+R+LERG +LVATPGRLVD++ER ++ L
Sbjct: 278 VQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLD 337
Query: 297 MIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSN 356
+YL LDEADRMLDMGFEPQIR+IVEQ MPP GVR TM+FSATFPKEIQ LA DFL
Sbjct: 338 FCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDE 397
Query: 357 YIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKG 416
YIFLAVGRVGS+++ I Q+V +V++ DKRS L+DLL G G+ +LTLVFVETKKG
Sbjct: 398 YIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDLL------GATGRDSLTLVFVETKKG 451
Query: 417 ADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHV 476
AD+LE +L + T+IHGDRSQ++RE AL F+SG +PILVAT VAARGLDI +V HV
Sbjct: 452 ADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHV 511
Query: 477 VNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPAWLSR 536
+NFDLP+DI++YVHRIGRTGR G GLAT+FFNE N ++ + L DL+ EA QEVP+WL
Sbjct: 512 INFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLEN 571
Query: 537 FAARSSFGGGKNRRSG--GGRFGGRDFRR-EGSFSRG-GSDYHGAGNSGG-GYGASGGYG 591
A + GG RS G FG RD+R+ GS S G G+ + SGG GYG S G+G
Sbjct: 572 MAYEHHYKGGSRGRSKRFSGGFGARDYRQSSGSSSSGFGASRGSSSRSGGSGYGNSRGFG 631
Query: 592 GGGYGG-----GYAGN 602
GGGYGG GY GN
Sbjct: 632 GGGYGGFYNSDGYGGN 647
>ref|XP_344188.2| PREDICTED: similar to probable ATP-dependent RNA helicase - mouse
[Rattus norvegicus]
Length = 1123
Score = 584 bits (1505), Expect = e-165
Identities = 331/653 (50%), Positives = 414/653 (62%), Gaps = 83/653 (12%)
Query: 19 TPPPSAAAAVANNAANTRPVYVPPHLRNRGPSAPAPAAPAFDNSGSRWAPPP-------- 70
T P S + A + A+ R Y+PPHLRNR ++D SRW+
Sbjct: 486 TSPDSQSGA--STASKGR--YIPPHLRNR-----EATKASYDKDSSRWSKDKDAYSSFGS 536
Query: 71 --------------------------RNDYRGGG--GGRGGGGYGNRGGGG-WDRREANP 101
R+DY G G GGR G G RGG W +
Sbjct: 537 RSDTRAKSSFFSDRGSGSRGRFDDRGRSDYEGVGSRGGRSGFGKFERGGNSRWCDK---- 592
Query: 102 FADQDDSEEPVTQEEQ--------ENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGE 153
AD+DD +P+ E+ NTGINF+ Y+DIPVE +G N PP + +F+++++GE
Sbjct: 593 -ADEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESFSDVEMGE 651
Query: 154 ALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPA- 212
+ NI +Y +PTPVQ+HAIPI RDLMACAQTGSGKTAAF PI+S I T P
Sbjct: 652 IIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGE 711
Query: 213 ------QRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQ 266
+ G R P++LVL+PTREL++QI+EEARKFSY++ VR V YGGA I QQ
Sbjct: 712 ALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQ 771
Query: 267 LRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMD 326
+R+LERG +LVATPGRLVD++ER ++ L +YL LDEADRMLDMGFEPQIR+IVEQ
Sbjct: 772 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 831
Query: 327 MPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRS 386
MPP GVR TM+FSATFPKEIQ LA DFL YIFLAVGRVGS+++ I Q+V +V+E+DKRS
Sbjct: 832 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRS 891
Query: 387 HLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAA 446
L+DLL+A GK +L LVFVETKKGAD+LE +L + T+IHGDRSQ++RE A
Sbjct: 892 FLLDLLNA------TGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 945
Query: 447 LRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATA 506
L F+SG +PILVAT VAARGLDI +V HV+NFDLP+DI++YVHRIGRTGR G GLAT+
Sbjct: 946 LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 1005
Query: 507 FFNENNTSMARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRSG---GGRFGGRDFRR 563
FFNE N ++ + L DL+ EA QEVP+WL A + GG RS G FG RD+R+
Sbjct: 1006 FFNERNINITKDLLDLLVEAKQEVPSWLENMAFEHHYKGGSRGRSKSRFSGGFGARDYRQ 1065
Query: 564 EGSFSRGGSDYHGAGNS---GGGYGASGGYGGGGYGG-----GYAGNSAGPXV 608
S A NS GG +G+S G+GGG YGG GY GN + V
Sbjct: 1066 SSGASSSSFSSGRASNSRSGGGSHGSSRGFGGGSYGGFYNSDGYGGNYSSQGV 1118
Score = 37.0 bits (84), Expect = 1.9
Identities = 43/181 (23%), Positives = 65/181 (35%), Gaps = 11/181 (6%)
Query: 414 KKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHV 473
K+ ++ E +NF T G S++ A+ G + + G+ HV
Sbjct: 415 KRHSEQPESQGAYSNFQGLTARGQSSREILRASKARLSRGKPQ----SSPYSSGMS--HV 468
Query: 474 AHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPAW 533
A L D + + T + G +TA R+ + +++ W
Sbjct: 469 AEEDELGL----DQQLAGLDLTSPDSQSGASTASKGRYIPPHLRNREATKASYDKDSSRW 524
Query: 534 LSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSF-SRGGSDYHGAGNSGGGYGASGGYGG 592
A SSFG + R+ F R G F RG SDY G G+ GG G G
Sbjct: 525 SKDKDAYSSFGSRSDTRAKSSFFSDRGSGSRGRFDDRGRSDYEGVGSRGGRSGFGKFERG 584
Query: 593 G 593
G
Sbjct: 585 G 585
>ref|XP_538003.1| PREDICTED: similar to DEAD-box protein 3 (Helicase-like protein 2)
(HLP2) (DEAD-box, X isoform) [Canis familiaris]
Length = 923
Score = 583 bits (1502), Expect = e-165
Identities = 328/626 (52%), Positives = 408/626 (64%), Gaps = 74/626 (11%)
Query: 39 YVPPHLRNRGPSAPAPAAPAFDNSGSRWAPP----------PRNDYRG--------GGGG 80
Y+PPHLRNR +D S W+ R+D RG G G
Sbjct: 299 YIPPHLRNR-----EATKGFYDKDSSGWSSSKDKDAYSSFGSRSDSRGKSSFFSDRGSGS 353
Query: 81 RGG------------GGYGNRGGGGWDRREAN----PFADQDDSEEPVTQEEQ------- 117
RG G G+R G G R N +D+DD +P+ E+
Sbjct: 354 RGRFDDRGRSDYDGIGSRGDRSGFGKFERGGNSRWCDKSDEDDWSKPLPPSERLEQELFS 413
Query: 118 -ENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIP 176
NTGINF+ Y+DIPVE +G N PP + +F+++++GE + NI +Y +PTPVQ+HAIP
Sbjct: 414 GGNTGINFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIP 473
Query: 177 ISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPA-------QRPPRGVRTVCPLALVL 229
I RDLMACAQTGSGKTAAF PI+S I + P + G R P++LVL
Sbjct: 474 IIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVL 533
Query: 230 SPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLE 289
+PTREL++QI+EEARKFSY++ VR V YGGA I QQ+R+LERG +LVATPGRLVD++E
Sbjct: 534 APTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME 593
Query: 290 RARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRL 349
R ++ L +YL LDEADRMLDMGFEPQIR+IVEQ MPP GVR TM+FSATFPKEIQ L
Sbjct: 594 RGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQML 653
Query: 350 ASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLV 409
A DFL YIFLAVGRVGS+++ I Q+V +V+ESDKRS L+DLL+A GK +LTLV
Sbjct: 654 ARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNA------TGKDSLTLV 707
Query: 410 FVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLD 469
FVETKKGAD+LE +L + T+IHGDRSQ++RE AL F+SG +PILVAT VAARGLD
Sbjct: 708 FVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLD 767
Query: 470 IPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQE 529
I +V HV+NFDLP+DI++YVHRIGRTGR G GLAT+FFNE N ++ + L DL+ EA QE
Sbjct: 768 ISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 827
Query: 530 VPAWLSRFAAR-----SSFGGGKNRRSGGGRFGGRDFRREGSFSRGGSDYHGAGNS---G 581
VP+WL A SS G K+ R GG FG RD+R+ S AG+S G
Sbjct: 828 VPSWLENMAYEHHYKGSSRGRSKSSRFSGG-FGARDYRQSSGASSSSFSSSRAGSSRSGG 886
Query: 582 GGYGASGGYGGGGYGG-----GYAGN 602
GG+G+S G+GGGGYGG GY GN
Sbjct: 887 GGHGSSRGFGGGGYGGFYNSDGYGGN 912
>gb|AAH34942.1| DDX3Y protein [Homo sapiens] gi|13514809|ref|NP_004651.2| DEAD
(Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Homo
sapiens]
Length = 660
Score = 582 bits (1500), Expect = e-164
Identities = 326/618 (52%), Positives = 405/618 (64%), Gaps = 60/618 (9%)
Query: 39 YVPPHLRNRGPSA--------------PAPAAPAFDNSGSRWAPPPRNDYRGGGGGRGGG 84
Y+PPHLRNR S A +F + SR P ++ G GR
Sbjct: 38 YIPPHLRNREASKGFHDKDSSGWSCSKDKDAYSSFGSRDSRGKPGYFSERGSGSRGRFDD 97
Query: 85 -------GYGNR---GGGGWDRREANPFAD---QDDSEEPVTQEEQ--------ENTGIN 123
G GNR G G ++R + + D +DD +P+ E+ NTGIN
Sbjct: 98 RGRSDYDGIGNRERPGFGRFERSGHSRWCDKSVEDDWSKPLPPSERLEQELFSGGNTGIN 157
Query: 124 FDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRD 183
F+ Y+DIPVE +G N PP + F++ID+GE + NI +Y +PTPVQ+HAIPI G RD
Sbjct: 158 FEKYDDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRD 217
Query: 184 LMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPR-------GVRTVCPLALVLSPTRELS 236
LMACAQTGSGKTAAF PI+S I T P + G R P++LVL+PTREL+
Sbjct: 218 LMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELA 277
Query: 237 MQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLS 296
+QI+EEARKFSY++ VR V YGGA I QQ+R+LERG +LVATPGRLVD++ER ++ L
Sbjct: 278 VQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLD 337
Query: 297 MIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSN 356
+YL LDEADRMLDMGFEPQIR+IVEQ MPP GVR TM+FSATFPKEIQ LA DFL
Sbjct: 338 FCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDE 397
Query: 357 YIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKG 416
YIFLAVGRVGS+++ I Q+V +V++ DKRS L+D+L G G +LTLVFVETKKG
Sbjct: 398 YIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDIL------GATGSDSLTLVFVETKKG 451
Query: 417 ADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHV 476
AD+LE +L + T+IHGDRSQ++RE AL F+SG +PILVAT VAARGLDI +V HV
Sbjct: 452 ADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHV 511
Query: 477 VNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPAWLSR 536
+NFDLP+DI++YVHRIGRTGR G GLAT+FFNE N ++ + L DL+ EA QEVP+WL
Sbjct: 512 INFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLEN 571
Query: 537 FAARSSFGGGKNRRSGGGR----FGGRDFRR-EGSFSRGGSDYHGAG--NSGGGYGASGG 589
A + GG RS R FG RD+R+ GS S G G+ + GGGYG S G
Sbjct: 572 MAYEHHYKGGSRGRSKSNRFSGGFGARDYRQSSGSSSSGFGASRGSSSRSGGGGYGNSRG 631
Query: 590 YGGGGYGG-----GYAGN 602
+GGGGYGG GY GN
Sbjct: 632 FGGGGYGGFYNSDGYGGN 649
>ref|XP_228701.3| PREDICTED: similar to RNA helicase [Rattus norvegicus]
Length = 741
Score = 581 bits (1497), Expect = e-164
Identities = 325/621 (52%), Positives = 409/621 (65%), Gaps = 64/621 (10%)
Query: 39 YVPPHLRNRGPS-----------APAPAAPAFDNSGSRWAPPPRNDYRG--GGGGRGG-- 83
Y+PPHLRNR + + + A+ + GSR ++ + G G G RG
Sbjct: 117 YIPPHLRNREATKGFYDKDSSGWSSSKDKDAYSSFGSRGDSRGKSSFFGDRGSGSRGRFD 176
Query: 84 ----------GGYGNRGGGGWDRREAN----PFADQDDSEEPVTQEEQ--------ENTG 121
GG G+R G G R N +D+DD +P+ E+ NTG
Sbjct: 177 DRGRGDYDGIGGRGDRSGFGKFERGGNSRWCDKSDEDDWSKPLPPSERLEQELFSGGNTG 236
Query: 122 INFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGG 181
INF+ Y+DIPVE +G N PP + +F+++++GE + NI +Y +PTPVQ+HAIPI
Sbjct: 237 INFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK 296
Query: 182 RDLMACAQTGSGKTAAFCFPIISGIMTGQPA-------QRPPRGVRTVCPLALVLSPTRE 234
RDLMACAQTGSGKTAAF PI+S I P + G R P++LVL+PTRE
Sbjct: 297 RDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 356
Query: 235 LSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 294
L++QI+EEARKFSY++ VR V YGGA I QQ+R+LERG +LVATPGRLVD++ER ++
Sbjct: 357 LAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIG 416
Query: 295 LSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFL 354
L +YL LDEADRMLDMGFEPQIR+IVEQ MPP GVR TM+FSATFPKEIQ LA DFL
Sbjct: 417 LDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL 476
Query: 355 SNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETK 414
YIFLAVGRVGS+++ I Q+V +V+E DKRS L+DLL+A GK +LTLVFVETK
Sbjct: 477 DEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNA------TGKDSLTLVFVETK 530
Query: 415 KGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVA 474
KGAD+LE +L + T+IHGDRSQ++RE AL F+SG +PILVAT VAARGLDI +V
Sbjct: 531 KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVK 590
Query: 475 HVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPAWL 534
HV+NFDLP+DI++YVHRIGRTGR G GLAT+FFNE N ++ + L DL+ EA QEVP+WL
Sbjct: 591 HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 650
Query: 535 SRFAAR-----SSFGGGKNRRSGGGRFGGRDFRREGSFSRGGSDYHGAGNS---GGGYGA 586
A SS G K+ R GG FG RD+R+ S A +S GGG+G+
Sbjct: 651 ENMAFEHHYKGSSRGRSKSSRFSGG-FGARDYRQSSGASSSSFSSSRASSSRSGGGGHGS 709
Query: 587 SGGYGGGGYGG-----GYAGN 602
S G+GGGGYGG GY GN
Sbjct: 710 SRGFGGGGYGGFYNSDGYGGN 730
>emb|CAH65043.1| hypothetical protein [Gallus gallus]
Length = 651
Score = 581 bits (1497), Expect = e-164
Identities = 323/621 (52%), Positives = 408/621 (65%), Gaps = 55/621 (8%)
Query: 29 ANNAANTRPVYVPPHLRNRGPS---------APAPAAPAFDNSGSRWAPPPRNDYRGGGG 79
+ +A ++ Y+PPHLRNR S + + A+ + G+R ++ + G
Sbjct: 28 SEGSATSKGRYIPPHLRNREASKQGFDSGGWSTSRDKDAYSSFGARSDRGAKSSFFDRGN 87
Query: 80 GRGGGGYGNRG-GGGWDRREANPF-----------ADQDDSEEPVTQEEQ--------EN 119
G GG Y RG G +DR F +D+DD +P+ E+ N
Sbjct: 88 GSRGGRYEERGRGSDYDRSGFGRFDRGGNSRWCDKSDEDDWSKPLPPSERLEQELFSGSN 147
Query: 120 TGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISL 179
TGINF+ Y+DIPVE +G N PP + +F+++D+GE + NI +Y +PTPVQ+HAIPI
Sbjct: 148 TGINFEKYDDIPVEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIK 207
Query: 180 GGRDLMACAQTGSGKTAAFCFPIISGIMTGQPA-------QRPPRGVRTVCPLALVLSPT 232
RDLMACAQTGSGKTAAF PI+S I P + G R P++LVL+PT
Sbjct: 208 EKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPT 267
Query: 233 RELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR 292
REL++QI+EEARKF+Y++ VR V YGGA I QQ+R+LERG +LVATPGRLVD++ER +
Sbjct: 268 RELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 327
Query: 293 VSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASD 352
+ L +YL LDEADRMLDMGFEPQIR+IVEQ MPP GVR TM+FSATFPKEIQ LA D
Sbjct: 328 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARD 387
Query: 353 FLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVE 412
FL YIFLAVGRVGS+++ I Q+V +V+E DKRS L+DLL+A GK +LTLVFVE
Sbjct: 388 FLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNA------TGKDSLTLVFVE 441
Query: 413 TKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPH 472
TKKGADALE +L + T+IHGDRSQ++RE AL F+SG +PILVAT VAARGLDI +
Sbjct: 442 TKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 501
Query: 473 VAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPA 532
V HV+NFDLP+DI++YVHRIGRTGR G GLAT+FFNE N ++ + L DL+ EA QEVP+
Sbjct: 502 VKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 561
Query: 533 WLSRFAARSSF-GGGKNRRSGG---GRFGGRDFRREGSFSRGGSDYHGAGNSGGGYGASG 588
WL A GGG RS G FG RD+R S G S + + + G G SG
Sbjct: 562 WLENMAYEQHHKGGGSRGRSKSRFTGGFGARDYRT--SSGAGSSSFSSSRPASGRTGGSG 619
Query: 589 --GYGGGGYGG-----GYAGN 602
G+GGGGYGG GY GN
Sbjct: 620 SRGFGGGGYGGFYNSDGYGGN 640
>ref|XP_416771.1| PREDICTED: similar to DEAD-box protein 3 (Helicase-like protein 2)
(HLP2) (DEAD-box, X isoform) [Gallus gallus]
Length = 643
Score = 581 bits (1497), Expect = e-164
Identities = 323/623 (51%), Positives = 410/623 (64%), Gaps = 59/623 (9%)
Query: 29 ANNAANTRPVYVPPHLRNRGPS---------APAPAAPAFDNSGSRWAPPPRNDYRGGGG 79
+ +A ++ Y+PPHLRNR S + + A+ + G+R ++ + G
Sbjct: 20 SEGSATSKGRYIPPHLRNREASKQGFDSGGWSTSRDKDAYSSFGARSDRGAKSSFFDRGN 79
Query: 80 GRGGGGYGNRG-GGGWDRREANPF-----------ADQDDSEEPVTQEEQ--------EN 119
G GG Y RG G +DR F +D+DD +P+ E+ N
Sbjct: 80 GSRGGRYEERGRGSDYDRSGFGRFDRGGNSRWCDKSDEDDWSKPLPPSERLEQELFSGSN 139
Query: 120 TGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISL 179
TGINF+ Y+DIPVE +G N PP + +F+++D+GE + NI +Y +PTPVQ+HAIPI
Sbjct: 140 TGINFEKYDDIPVEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIK 199
Query: 180 GGRDLMACAQTGSGKTAAFCFPIISGIMTGQPA-------QRPPRGVRTVCPLALVLSPT 232
RDLMACAQTGSGKTAAF PI+S I P + G R P++LVL+PT
Sbjct: 200 EKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPT 259
Query: 233 RELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR 292
REL++QI+EEARKF+Y++ VR V YGGA I QQ+R+LERG +LVATPGRLVD++ER +
Sbjct: 260 RELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 319
Query: 293 VSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASD 352
+ L +YL LDEADRMLDMGFEPQIR+IVEQ MPP GVR TM+FSATFPKEIQ LA D
Sbjct: 320 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARD 379
Query: 353 FLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVE 412
FL YIFLAVGRVGS+++ I Q+V +V+E DKRS L+DLL+A GK +LTLVFVE
Sbjct: 380 FLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNAT------GKDSLTLVFVE 433
Query: 413 TKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPH 472
TKKGADALE +L + T+IHGDRSQ++RE AL F+SG +PILVAT VAARGLDI +
Sbjct: 434 TKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 493
Query: 473 VAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPA 532
V HV+NFDLP+DI++YVHRIGRTGR G GLAT+FFNE N ++ + L DL+ EA QEVP+
Sbjct: 494 VKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 553
Query: 533 WLSRFAARSSFGGG------KNRRSGGGRFGGRDFRREGSFSRGGSDYHGAGNSGGGYGA 586
WL A GG K+R +GG FG RD+R S G S + + + G G
Sbjct: 554 WLENMAYEQHHKGGGSRGRSKSRFTGG--FGARDYRT--SSGAGSSSFSSSRPASGRTGG 609
Query: 587 SG--GYGGGGYGG-----GYAGN 602
SG G+GGGGYGG GY GN
Sbjct: 610 SGSRGFGGGGYGGFYNSDGYGGN 632
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,190,171,457
Number of Sequences: 2540612
Number of extensions: 61863811
Number of successful extensions: 861353
Number of sequences better than 10.0: 10812
Number of HSP's better than 10.0 without gapping: 7220
Number of HSP's successfully gapped in prelim test: 3823
Number of HSP's that attempted gapping in prelim test: 453471
Number of HSP's gapped (non-prelim): 151320
length of query: 612
length of database: 863,360,394
effective HSP length: 134
effective length of query: 478
effective length of database: 522,918,386
effective search space: 249954988508
effective search space used: 249954988508
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)
Medicago: description of AC146760.13