BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146759.10 + phase: 1 /partial
(178 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB08712.1| 40S ribosomal protein S3 [Arabidopsis thaliana] ... 303 1e-81
ref|XP_479106.1| putative 40S ribosomal protein [Oryza sativa (j... 301 5e-81
ref|XP_463024.1| putative ribosomal protein [Oryza sativa (japon... 301 7e-81
emb|CAB88349.1| ribosomal protein S3a homolog [Arabidopsis thali... 298 6e-80
gb|AAM92710.1| putative 40S ribosomal protein S3 [Triticum aesti... 294 9e-79
gb|AAM14147.1| putative 40S ribosomal protein [Arabidopsis thali... 293 1e-78
gb|AAQ94564.1| ribosomal protein S3 [Danio rerio] 261 5e-69
emb|CAH04314.1| S3e ribosomal protein [Carabus granulatus] 261 5e-69
gb|AAT01919.1| 40S ribosomal protein S3 [Pseudopleuronectes amer... 261 6e-69
gb|AAH61265.1| Ribosomal protein S3 [Xenopus tropicalis] gi|4536... 260 1e-68
ref|XP_417259.1| PREDICTED: similar to 40S ribosomal protein S3 ... 260 1e-68
gb|AAS49565.1| ribosomal protein S3 [Latimeria chalumnae] 260 1e-68
gb|AAK95184.1| 40S ribosomal protein S3 [Ictalurus punctatus] gi... 260 1e-68
emb|CAA84291.1| ribosomal protein S1 [Xenopus laevis] gi|587602|... 259 2e-68
pir||R3RT3 ribosomal protein S3, cytosolic [validated] - rat 259 2e-68
ref|NP_001009239.1| ribosomal protein S3 [Rattus norvegicus] gi|... 259 2e-68
gb|AAH41299.1| Similar to ribosomal protein S3 [Xenopus laevis] 259 2e-68
gb|AAV34858.1| ribosomal protein S3 [Bombyx mori] 259 2e-68
gb|AAH42230.1| Ribosomal protein S1a protein [Xenopus laevis] gi... 259 2e-68
dbj|BAB27761.1| unnamed protein product [Mus musculus] 259 2e-68
>dbj|BAB08712.1| 40S ribosomal protein S3 [Arabidopsis thaliana]
gi|20466075|gb|AAM19959.1| AT5g35530/MOK9_14
[Arabidopsis thaliana] gi|15238533|ref|NP_198403.1| 40S
ribosomal protein S3 (RPS3C) [Arabidopsis thaliana]
gi|16604318|gb|AAL24165.1| AT5g35530/MOK9_14
[Arabidopsis thaliana]
Length = 248
Score = 303 bits (776), Expect = 1e-81
Identities = 150/173 (86%), Positives = 160/173 (91%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVP 173
VLG+KVKIMLDWDPKGKQGP TPLPD+V IHTPKE++ YI PA VV VP
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVTQAAFVP 233
>ref|XP_479106.1| putative 40S ribosomal protein [Oryza sativa (japonica
cultivar-group)] gi|14192875|gb|AAK55780.1| Putative 40S
ribosomal protein; contains C-terminal domain [Oryza
sativa] gi|50509862|dbj|BAD32034.1| putative 40S
ribosomal protein [Oryza sativa (japonica
cultivar-group)] gi|34394183|dbj|BAC84635.1| putative
40S ribosomal protein [Oryza sativa (japonica
cultivar-group)]
Length = 233
Score = 301 bits (771), Expect = 5e-81
Identities = 152/174 (87%), Positives = 158/174 (90%), Gaps = 5/174 (2%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELTSVVQKRF FPEN VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 63 EKGRRIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 122
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG PV YIDSAVRHVLLRQG
Sbjct: 123 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQG 182
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPV 174
VLGIKVKIMLDWDPKGKQGP TPLPD+VTIH PK+E+E+ +P E+PV
Sbjct: 183 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDEDEFSKPLTA-----EIPV 231
>ref|XP_463024.1| putative ribosomal protein [Oryza sativa (japonica cultivar-group)]
gi|38093738|gb|AAR10854.1| putative ribosomal protein
[Oryza sativa (japonica cultivar-group)]
Length = 228
Score = 301 bits (770), Expect = 7e-81
Identities = 152/167 (91%), Positives = 157/167 (93%), Gaps = 1/167 (0%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVA 167
VLGIKVKIMLDWDPKGK GP TPLPD+VTIH PKEEEE +RP ++A
Sbjct: 181 VLGIKVKIMLDWDPKGKVGPTTPLPDLVTIHAPKEEEE-LRPPVLIA 226
>emb|CAB88349.1| ribosomal protein S3a homolog [Arabidopsis thaliana]
gi|21618068|gb|AAM67118.1| ribosomal protein S3a-like
protein [Arabidopsis thaliana]
gi|16323404|gb|AAL15196.1| putative ribosomal protein
S3a homolog [Arabidopsis thaliana]
gi|14334698|gb|AAK59527.1| putative ribosomal protein
S3a homolog [Arabidopsis thaliana]
gi|16226458|gb|AAL16173.1| AT3g53870/F5K20_170
[Arabidopsis thaliana] gi|15232352|ref|NP_190955.1| 40S
ribosomal protein S3 (RPS3B) [Arabidopsis thaliana]
gi|11275277|pir||T45927 ribosomal protein S3a homolog -
Arabidopsis thaliana
Length = 249
Score = 298 bits (762), Expect = 6e-80
Identities = 148/167 (88%), Positives = 155/167 (92%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVA 167
VLGIKVK+MLDWDPKG GPKTPLPD+V IH+PKEEE PA V A
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPAQVAA 227
>gb|AAM92710.1| putative 40S ribosomal protein S3 [Triticum aestivum]
Length = 227
Score = 294 bits (752), Expect = 9e-79
Identities = 150/166 (90%), Positives = 155/166 (93%), Gaps = 1/166 (0%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELTSVVQKRF F EN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFLENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV +YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVV 166
VLGIKVKIMLDWDPKGK GP TPLPD+VTIH PKEE E +RP A+V
Sbjct: 181 VLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEENE-LRPPALV 225
>gb|AAM14147.1| putative 40S ribosomal protein [Arabidopsis thaliana]
gi|15028253|gb|AAK76715.1| putative 40S ribosomal
protein; contains C-terminal domain [Arabidopsis
thaliana] gi|4582468|gb|AAD24852.1| 40S ribosomal
protein; contains C-terminal domain [Arabidopsis
thaliana] gi|20148377|gb|AAM10079.1| 40S ribosomal
protein; contains C-terminal domain [Arabidopsis
thaliana] gi|15451084|gb|AAK96813.1| 40S ribosomal
protein [Arabidopsis thaliana]
gi|15450571|gb|AAK96463.1| At2g31610/T9H9.13
[Arabidopsis thaliana] gi|14190419|gb|AAK55690.1|
At2g31610/T9H9.13 [Arabidopsis thaliana]
gi|15225107|ref|NP_180719.1| 40S ribosomal protein S3
(RPS3A) [Arabidopsis thaliana] gi|25294441|pir||H84722
hypothetical protein At2g31610 [imported] - Arabidopsis
thaliana
Length = 250
Score = 293 bits (750), Expect = 1e-78
Identities = 145/167 (86%), Positives = 153/167 (90%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVA 167
VLGIKVKIMLDWDP GK GPKTPLPD+V IH PK++ Y PA A
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAA 227
>gb|AAQ94564.1| ribosomal protein S3 [Danio rerio]
Length = 245
Score = 261 bits (668), Expect = 5e-69
Identities = 137/178 (76%), Positives = 145/178 (80%), Gaps = 3/178 (1%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPVPVPV 178
VLGIKVKIML WDP GK GPK PLPD V+I PKEE + P V+ VPV
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE---VLPTTPVSEQKGAKPEVPV 235
>emb|CAH04314.1| S3e ribosomal protein [Carabus granulatus]
Length = 239
Score = 261 bits (668), Expect = 5e-69
Identities = 130/156 (83%), Positives = 138/156 (88%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELTSVVQKRF FPE+SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFSFPEHSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG P DY+D+A RHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVDTATRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V++ PKEE
Sbjct: 181 VLGIKVKIMLPWDPNGKIGPKRPLPDNVSVVEPKEE 216
>gb|AAT01919.1| 40S ribosomal protein S3 [Pseudopleuronectes americanus]
Length = 246
Score = 261 bits (667), Expect = 6e-69
Identities = 138/184 (75%), Positives = 147/184 (79%), Gaps = 9/184 (4%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKE---------EEEYIRPAAVVANDIE 171
VLGIKVKIML WDP GK GPK PLPD V+I PKE E++ +P A V
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEESLPTTPISEQKGCKPEAPVMPQGG 240
Query: 172 VPVP 175
PVP
Sbjct: 241 TPVP 244
>gb|AAH61265.1| Ribosomal protein S3 [Xenopus tropicalis]
gi|45360887|ref|NP_989119.1| ribosomal protein S3
[Xenopus tropicalis]
Length = 246
Score = 260 bits (665), Expect = 1e-68
Identities = 132/156 (84%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PKEE
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE 216
>ref|XP_417259.1| PREDICTED: similar to 40S ribosomal protein S3 [Gallus gallus]
Length = 243
Score = 260 bits (665), Expect = 1e-68
Identities = 132/156 (84%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PKEE
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE 216
>gb|AAS49565.1| ribosomal protein S3 [Latimeria chalumnae]
Length = 211
Score = 260 bits (665), Expect = 1e-68
Identities = 132/156 (84%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 51 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 110
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 111 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 170
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PKEE
Sbjct: 171 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE 206
>gb|AAK95184.1| 40S ribosomal protein S3 [Ictalurus punctatus]
gi|22001962|sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3
Length = 245
Score = 260 bits (664), Expect = 1e-68
Identities = 137/178 (76%), Positives = 144/178 (79%), Gaps = 3/178 (1%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FP SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPVPVPV 178
VLGIKVKIML WDP GK GPK PLPD V+I PKEE I P V+ VPV
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE---ILPTTPVSEQKGAKPEVPV 235
>emb|CAA84291.1| ribosomal protein S1 [Xenopus laevis] gi|587602|emb|CAA84290.1|
ribosomal protein [Xenopus laevis]
gi|1350988|sp|P47835|RS3B_XENLA 40S ribosomal protein
S3B (S1B)
Length = 246
Score = 259 bits (662), Expect = 2e-68
Identities = 131/156 (83%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>pir||R3RT3 ribosomal protein S3, cytosolic [validated] - rat
Length = 243
Score = 259 bits (662), Expect = 2e-68
Identities = 131/156 (83%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>ref|NP_001009239.1| ribosomal protein S3 [Rattus norvegicus]
gi|6755372|ref|NP_036182.1| ribosomal protein S3 [Mus
musculus] gi|57102362|ref|XP_534008.1| PREDICTED:
similar to ribosomal protein S3 [Canis familiaris]
gi|15421127|gb|AAK95377.1| ribosomal protein S3 [Mus
musculus] gi|14715107|gb|AAH10721.1| Ribosomal protein
S3 [Mus musculus] gi|57728|emb|CAA35916.1| unnamed
protein product [Rattus rattus]
gi|51703309|sp|P62908|RS3_MOUSE 40S ribosomal protein S3
gi|51703302|sp|P62909|RS3_RAT 40S ribosomal protein S3
gi|439522|emb|CAA54167.1| ribosomal protein S3 [Mus
musculus] gi|26341816|dbj|BAC34570.1| unnamed protein
product [Mus musculus] gi|12848850|dbj|BAB28111.1|
unnamed protein product [Mus musculus]
gi|12846127|dbj|BAB27042.1| unnamed protein product [Mus
musculus] gi|56970487|gb|AAH88450.1| Ribosomal protein
S3 [Rattus norvegicus] gi|12833687|dbj|BAB22624.1|
unnamed protein product [Mus musculus]
Length = 243
Score = 259 bits (662), Expect = 2e-68
Identities = 131/156 (83%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>gb|AAH41299.1| Similar to ribosomal protein S3 [Xenopus laevis]
Length = 246
Score = 259 bits (662), Expect = 2e-68
Identities = 131/156 (83%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>gb|AAV34858.1| ribosomal protein S3 [Bombyx mori]
Length = 243
Score = 259 bits (662), Expect = 2e-68
Identities = 129/178 (72%), Positives = 144/178 (80%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 62 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 121
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P DY+++A RHVLLRQG
Sbjct: 122 GVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG 181
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPVPVPV 178
VLGIKVKIML WD +GK GPK P PD + + PK+E + P + V + P+P PV
Sbjct: 182 VLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVRSLAPAPLPQPV 239
>gb|AAH42230.1| Ribosomal protein S1a protein [Xenopus laevis]
gi|65091|emb|CAA40592.1| ribosomal protein S1a [Xenopus
laevis] gi|133940|sp|P02350|RS3A_XENLA 40S ribosomal
protein S3A (S1A)
Length = 246
Score = 259 bits (662), Expect = 2e-68
Identities = 131/156 (83%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>dbj|BAB27761.1| unnamed protein product [Mus musculus]
Length = 243
Score = 259 bits (662), Expect = 2e-68
Identities = 131/156 (83%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 295,172,350
Number of Sequences: 2540612
Number of extensions: 12153275
Number of successful extensions: 28278
Number of sequences better than 10.0: 410
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 206
Number of HSP's that attempted gapping in prelim test: 28028
Number of HSP's gapped (non-prelim): 411
length of query: 178
length of database: 863,360,394
effective HSP length: 119
effective length of query: 59
effective length of database: 561,027,566
effective search space: 33100626394
effective search space used: 33100626394
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)
Medicago: description of AC146759.10