BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146758.6 + phase: 0 /pseudo
(515 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg... 382 e-104
ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (j... 264 4e-69
emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultiva... 256 9e-67
gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cult... 255 2e-66
gb|AAP53623.1| putative non-LTR retroelement reverse transcripta... 247 6e-64
emb|CAD41368.2| OSJNBa0088A01.7 [Oryza sativa (japonica cultivar... 247 7e-64
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 244 5e-63
gb|AAX95233.1| retrotransposon protein, putative, unclassified [... 238 4e-61
gb|AAX95130.1| retrotransposon protein, putative, unclassified [... 238 4e-61
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 236 1e-60
gb|AAP44701.1| putative reverse transcriptase [Oryza sativa (jap... 230 9e-59
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 230 9e-59
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 230 9e-59
ref|NP_909894.1| putative reverse transcriptase [Oryza sativa (j... 228 4e-58
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 227 6e-58
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 227 8e-58
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 227 8e-58
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 226 1e-57
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 226 1e-57
emb|CAD40197.1| OSJNBb0043H09.5 [Oryza sativa (japonica cultivar... 225 3e-57
>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
gi|7484649|pir||T14619 reverse transcriptase - beet
retrotransposon (fragment)
Length = 507
Score = 382 bits (982), Expect = e-104
Identities = 205/516 (39%), Positives = 304/516 (58%), Gaps = 13/516 (2%)
Query: 2 RGKNVCVCGDFNAIRSREERRSVSVG-QVASDFSHFNSFIDNNVLVDL-PLGGRNFTWFK 59
RG + GD+N ER S + Q A DF +F I+N L+++ P+ G FTWF+
Sbjct: 2 RGSPCLIMGDYNETLIPAERGSHLISSQGARDFQNF---INNMGLIEISPIKGF-FTWFR 57
Query: 60 GDGKSMSRLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPSRMLKCW 119
G KS +LDR + +W +P+ R SDHCPL+ + +NWGP+P R L CW
Sbjct: 58 GQSKS--KLDRLFVQPEWLTSFPSLKLNILKRSPSDHCPLLAFSSHQNWGPKPFRFLNCW 115
Query: 120 TDIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERL 179
P + +S W S + +K + LK +LK+W+ + I +E++
Sbjct: 116 LTHPQCMKIISEIWTKNHNSS-----VPDKLRTLKEALKQWNQKEFGIIDDNIKHCEEKI 170
Query: 180 ATLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSV 239
LD S LL E E ++ + + + S SR +W++EGD+N+++FH++
Sbjct: 171 HFLDNIANSRLLCTNELQERDDAQLNLWTWLKRSESYWALNSRARWIKEGDSNTRYFHTL 230
Query: 240 LASRRRRNSLCTIVVDGVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*SLSVAE 299
RR +N L I +G + I+E +F++ F RP L F LS +E
Sbjct: 231 ATIRRHKNHLQYIKTEGKNISKPGEIKEEAVAYFQHIFAEEFSTRPVFNGLNFNKLSESE 290
Query: 300 GVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKL 359
LI PF+ +E+ AV CD+ K+PGPDG NF FIK W +K +I++ V +F +G L
Sbjct: 291 CSSLIAPFTHEEIDEAVDSCDAQKAPGPDGFNFKFIKSSWEVIKKDIYKIVEDFWASGSL 350
Query: 360 SKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAF 419
G NS FIALIPK +P+ N+FRPIS+VG LYKI+AK+LA RL+ V+ +I QS+F
Sbjct: 351 PHGCNSAFIALIPKTQHPRGFNEFRPISMVGCLYKIIAKILARRLQRVMDHLIGPYQSSF 410
Query: 420 VKNRQILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWR 479
+K RQILDG+LIA+E +D R++K + ++ K+DF KA+DS+ W YL+ V+ +M+FP++WR
Sbjct: 411 IKGRQILDGVLIASELIDSCRRMKNEAVVLKLDFHKAFDSISWNYLEWVLCQMNFPLVWR 470
Query: 480 KWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
WI+ CV +A+A+VL+NGSP+ F +RGLRQGDPL
Sbjct: 471 SWIRSCVMSASAAVLINGSPSSVFKLQRGLRQGDPL 506
>ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|29893671|gb|AAP06925.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 870
Score = 264 bits (675), Expect = 4e-69
Identities = 170/516 (32%), Positives = 263/516 (50%), Gaps = 7/516 (1%)
Query: 3 GKNVCVCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWFKGDG 62
G+ + GDFN I ++ + ++ + F + ID L ++PL R FTW
Sbjct: 137 GEGWLILGDFNMIYRARDKNNSNLN--LARMRRFRAVIDRCELHEIPLQNRKFTWSNERR 194
Query: 63 KS-MSRLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPSRMLKCWTD 121
K+ + +LDR +E+W L +P+ + A G SDHCPL+LS + PR + WT
Sbjct: 195 KATLVKLDRCFCNEEWDLAFPHHVLHALPTGPSDHCPLVLSNPQGPHRPRTFKFENFWTR 254
Query: 122 IPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLAT 181
+PG++ V + W + L +K + + L++W + +
Sbjct: 255 VPGFKDKVKDIWSQPSSHTEPMHRLNQKLQRTAVGLRDWTKGICSEAKLQFHMALNVIQR 314
Query: 182 LDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVLA 241
LD E L+ E + +L L+ + + Q SR+ +REGDAN+KFFH +
Sbjct: 315 LDVAQEHRELSPPETRLRAALKRKVLRLASIERARKKQASRVTHIREGDANTKFFHLKVN 374
Query: 242 SRRRRNSLCTIVVDGVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*SLSVAEGV 301
+RRRRN++ + D + HF + F RP+ N + +++ +
Sbjct: 375 ARRRRNTIQRLKKDSGWAVTHGEKESTIHDHFAS-FMGRPGPRPNELNWETLDITLIDLA 433
Query: 302 GLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFH--RNGKL 359
L +PF+ +EV A+ + + K+PGPDG F K W +KD+I S + R L
Sbjct: 434 TLGEPFTEEEVHRAIKEMPADKAPGPDGFTGAFFKVCWEIIKDDILLVFSSIYNLRCAHL 493
Query: 360 SKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAF 419
+ +NS I LIPK D + ++D+RPISL+ S+ KI AK+LA RLR + +IS QSAF
Sbjct: 494 NL-LNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLALRLRPHMHELISVNQSAF 552
Query: 420 VKNRQILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWR 479
+K R I D L +L++ +LLFK+D KA+DSV W YL +++ R FP W
Sbjct: 553 IKGRSIHDNYLFVRNMTRRYHRLRRAMLLFKLDITKAFDSVRWDYLLALLQRKGFPTRWI 612
Query: 480 KWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
W+ +S++T+ VL+NGSP RGLRQGDPL
Sbjct: 613 DWLGALLSSSTSQVLLNGSPGQRIKHGRGLRQGDPL 648
>emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultivar-group)]
Length = 1189
Score = 256 bits (655), Expect = 9e-67
Identities = 170/518 (32%), Positives = 263/518 (49%), Gaps = 11/518 (2%)
Query: 3 GKNVCVCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWFKGDG 62
G+ + GDFN I ++ + ++ + F + ID L ++PL R FTW
Sbjct: 137 GEGWLILGDFNMIYRARDKNNSNLN--LARMRRFRAVIDRCELHEIPLQNRKFTWSNERR 194
Query: 63 KS-MSRLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPSRMLKCWTD 121
K+ + +LDR +E+W L +P+ + A G SDH PL+LS + PR + WT
Sbjct: 195 KATLVKLDRCFCNEEWDLAFPHHVLHALPTGPSDHYPLVLSNPQGPHRPRTFKFENFWTR 254
Query: 122 IPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLAT 181
+PG++ V + W + L +K + + L++W + +
Sbjct: 255 VPGFKDKVKDIWSQPSSHTEPMHRLNQKLQHTAVGLRDWTKGICSEAKLQFHMALNVIQR 314
Query: 182 LDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVLA 241
LD E LT E + +L L+ + + Q SR+ +REGDAN+KFFH +
Sbjct: 315 LDVAQEHRELTPLETRLRAALKRKVLGLASIERARKKQASRVTHIREGDANTKFFHLKVN 374
Query: 242 SRRRRNSLCTIVVDG--VVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*SLSVAE 299
+RRRRN++ + D V G + + HF + F RP+ N + ++ +
Sbjct: 375 ARRRRNTIQRLKKDSGWAVTHGDKEL--TIHDHFAS-FMGRPGPRPNELNWETLDITPID 431
Query: 300 GVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFH--RNG 357
L +PF+ +EV A+ + + K+PGPDG F K W +KD+I S + R
Sbjct: 432 LATLGEPFTEEEVHKAIKEMPADKAPGPDGFTGAFFKVCWEIIKDDILLVFSSIYNLRCA 491
Query: 358 KLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQS 417
L+ +NS I LIPK D + ++D+RPISL+ S+ KI AK+LA RLR + +IS QS
Sbjct: 492 HLNL-LNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLALRLRPHMHELISVNQS 550
Query: 418 AFVKNRQILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVL 477
AF+K R I D L + + ++ +LLFK+D KA+DSV W YL +++ R FP
Sbjct: 551 AFIKGRSIHDNYLFVRNTIRRYHRQRRAMLLFKLDITKAFDSVRWDYLLALLQRKGFPTR 610
Query: 478 WRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
W W+ +S++ + VL+NGSP RGLRQGDPL
Sbjct: 611 WIDWLGALLSSSISQVLLNGSPGQRIKHGRGLRQGDPL 648
>gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1023
Score = 255 bits (652), Expect = 2e-66
Identities = 165/481 (34%), Positives = 250/481 (51%), Gaps = 9/481 (1%)
Query: 40 IDNNVLVDLPLGGRNFTWFKGDGKS-MSRLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCP 98
ID L ++PL R FTW K+ + +LDR +E+W L +P+ + A G SDHCP
Sbjct: 6 IDRCELHEIPLQNRKFTWSNERRKATLVKLDRCFCNEEWDLAFPHHVLHAFPTGPSDHCP 65
Query: 99 LILSVAEENWGPRPSRMLKCWTDIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLK 158
L+LS + PR + WT +PG++ V + W + L +K + + L+
Sbjct: 66 LVLSNPQGPHRPRTFKFENFWTRVPGFKDKVKDIWSQPSSHTEPMHHLNQKLQRTAVGLR 125
Query: 159 EWHASHS*NLLGKISDLKERLATLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICW 218
+W + + LD E L+ E + +L L+ + +
Sbjct: 126 DWTKGICSEAKLQFHMALNVIQRLDVAQEHRELSPPETRLRAALKRKVLGLASIERARKK 185
Query: 219 QQSRIQWLREGDANSKFFHSVLASRRRRNSLCTIVVDG--VVVEGVHPIREAVFCHFENH 276
Q SR+ +REGDAN+KFFH + +RRRRN++ + D V G + + HF +
Sbjct: 186 QASRVTHIREGDANTKFFHLRVNARRRRNTIQRLKKDSGWAVTHGEKEL--TIHDHFAS- 242
Query: 277 FRSVNVERPSLTNLQF*SLSVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIK 336
F RP+ N + ++ + L +PF+ +EV A+ + + K+PGPDG F K
Sbjct: 243 FMGRPGPRPNELNWETLDITPIDLATLGEPFTEEEVHRAIKEMPADKAPGPDGFTGAFFK 302
Query: 337 EFWLDLKDEIFRFVSEFH--RNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYK 394
W +KD+I S + R L+ +NS I LIPK D + ++D+RPISL+ S+ K
Sbjct: 303 VCWEIIKDDILLVFSSIYNLRCAHLNL-LNSANIVLIPKKDGAESVSDYRPISLIHSIAK 361
Query: 395 ILAKLLANRLRVVIGSVISDAQSAFVKNRQILDGILIANEAVDEARKLKKDLLLFKVDFE 454
I AK+LA RLR + +IS QSAF+K R I D L + +L++ +LLFK+D
Sbjct: 362 IFAKMLALRLRPHMHELISVNQSAFIKGRSIHDNYLFVRNMIRRYHRLRRAMLLFKLDIT 421
Query: 455 KAYDSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDP 514
KA+DSV W YL +++ R FP W W+ +S++T+ VL+NGSP RGLRQGDP
Sbjct: 422 KAFDSVRWDYLLALLQRKGFPTRWIDWLGALLSSSTSQVLLNGSPGQRIKHGRGLRQGDP 481
Query: 515 L 515
L
Sbjct: 482 L 482
>gb|AAP53623.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534068|ref|NP_921336.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|19881727|gb|AAM01128.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1228
Score = 247 bits (631), Expect = 6e-64
Identities = 160/523 (30%), Positives = 257/523 (48%), Gaps = 16/523 (3%)
Query: 2 RGKNVCVCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF-KG 60
R +V + GDFN R E+ + + D FNSFI N L ++ G FTW K
Sbjct: 649 RSHHVVIGGDFNLYRFASEKSNTNTNSRNMDM--FNSFIANLDLREIYRSGPKFTWTNKQ 706
Query: 61 DGKSMSRLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENW-GPRPSRMLKCW 119
D LDR L++ DW ++P L + +R SDH PL+L E + + W
Sbjct: 707 DSLVQEVLDRILVTTDWDDMYPTALLSSILRVGSDHIPLLLDTCEGIIVKSKYFKFESAW 766
Query: 120 TDIPGYRQFVSNKW----KSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDL 175
+++ V + S+ + W +K L+ L W ++ L + L
Sbjct: 767 LAEESFKELVIQRLLPRDNSYILEFWN-----KKQSSLRRFLVGWGKNNRSKKLREKRTL 821
Query: 176 KERLATLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKF 235
+ ++ LD+K + LT +E + + +D+ + + ++ QW+ EGD N++F
Sbjct: 822 QCKIEELDKKALTEELTSDEWNQRYSWENDLEHIYEMEELYWHKRCGEQWILEGDRNTEF 881
Query: 236 FHSVLASRRRRNSLCTIVVDGVVVEGVHPIREAVFCHFENHFRSVNVERPSLTN---LQF 292
FH V R+R+ + +++ + IRE + +++ FR V L+
Sbjct: 882 FHRVANGRKRKCHITSLMDGETELTSKSEIREHIVEYYKTLFRDVPTANIHLSQGVWTNH 941
Query: 293 *SLSVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSE 352
+LS A L +PF + E+ + + +PGPDG + F + FW +K+++F +
Sbjct: 942 LNLSDASKENLTRPFVMAELDKVINEAKLNTAPGPDGFSIPFYRAFWPQVKNDLFEMLLM 1001
Query: 353 FHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVI 412
H K +N I+LIPK +NP + FRPI ++ +K L+K++ NRL V V+
Sbjct: 1002 LHNEDLDLKRLNFGVISLIPKNNNPTDIKQFRPICVLNDCFKFLSKVVTNRLTEVADEVV 1061
Query: 413 SDAQSAFVKNRQILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRM 472
S Q+AF+ R IL+G +I +E + E + + ++ K+DFEKAYD V+W +L VM R
Sbjct: 1062 SQTQTAFIPGRFILEGCVIIHEVLHELKSKNSEGIILKIDFEKAYDKVNWEFLIEVMERK 1121
Query: 473 SFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
+FP W WIK CV + +NG TD F RGLRQGDPL
Sbjct: 1122 NFPKKWISWIKSCVMGGRVCININGERTDFFRTFRGLRQGDPL 1164
>emb|CAD41368.2| OSJNBa0088A01.7 [Oryza sativa (japonica cultivar-group)]
gi|50928243|ref|XP_473649.1| OSJNBa0088A01.7 [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 247 bits (630), Expect = 7e-64
Identities = 165/512 (32%), Positives = 261/512 (50%), Gaps = 13/512 (2%)
Query: 10 GDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF-KGDGKSMSRL 68
GDFN I ++ + ++ F + I++ L ++ L R FTW + +M RL
Sbjct: 596 GDFNMIYRACDKSNSNIN--LRRMRRFRAAINHCELKEIHLQNRKFTWTNERRHPTMVRL 653
Query: 69 DRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPSRMLKCWTDIPGYRQF 128
DRF +E+W L + + + G SDHCPL+LS + PR + WT +PG+R
Sbjct: 654 DRFFCNENWDLAFGHHILHTLSSGTSDHCPLLLSNPQGPQRPRTFKFENFWTKLPGFRTE 713
Query: 129 VSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLDEKGES 188
V W+ + L +K ++LK+W + K + + LD E+
Sbjct: 714 VQLAWERTSTHHEPLHRLADKLSHTALALKKWARGICSEVKLKFHLALDVIQRLDVAQEN 773
Query: 189 MLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVLASRRRRNS 248
LT E G+ +L + + + Q SRI ++EGDAN+K+FH + +R+RRN
Sbjct: 774 RDLTQAEFRLRLGLKRRLLGYAAIERARKKQASRITNIKEGDANTKYFHRKVNARKRRNH 833
Query: 249 LCTIV-VDGVVVEGVHPIREAVFCHFENHFRSV-NVERPSLTNLQF*SLSVA--EGVGLI 304
+ + +G V H +E V +HFR V P ++L + SL +A + L
Sbjct: 834 IFRLRRQNGWAV--THAEKEGVIA---DHFRQVMGRPEPRTSDLNWPSLDLAPTDLTRLE 888
Query: 305 KPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKGI- 363
+PFS E++ A+ + K+PGPDG F K W ++ ++ + H + +
Sbjct: 889 EPFSEAEIRKAINEMPGDKAPGPDGFTGKFFKSCWDIIQVDVIAAFNALHNMRSVHLNLL 948
Query: 364 NSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNR 423
NS + LIPK D + +NDFRPISL+ K+ +K+LA RLR ++ S+IS QSAF++ R
Sbjct: 949 NSANVVLIPKKDGAEGINDFRPISLIHGFAKLSSKVLAIRLRPLMQSLISPNQSAFIRGR 1008
Query: 424 QILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIK 483
I D + V K ++ +LLFK+D KA+DSV W YL +++ P WR WI
Sbjct: 1009 SIHDNFMYVRNMVRRYHKTRRPILLFKLDISKAFDSVRWDYLLALLQNRGLPQKWRDWIS 1068
Query: 484 VCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
+ST+T+ + +NG P + +GLRQGDP+
Sbjct: 1069 GLLSTSTSKITLNGIPGETIRHWKGLRQGDPI 1100
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 244 bits (623), Expect = 5e-63
Identities = 162/519 (31%), Positives = 259/519 (49%), Gaps = 27/519 (5%)
Query: 10 GDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF--KGDGKSMSR 67
GDFN + E+ + S F +++ L ++ G F+W+ + D R
Sbjct: 135 GDFNELVDPSEKIG-GPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGNRNDELVQCR 193
Query: 68 LDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPS-RMLKCWTDIPGYR 126
LDR + ++ W ++P + SDH PLI ++ +NW + K W G++
Sbjct: 194 LDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKWAGFKYDKRWVQREGFK 253
Query: 127 QFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLDEKG 186
+ N W Q S ++ EK + + +W + +I +L+ +L D
Sbjct: 254 DLLCNFWS--QQSTKTNALMMEKIASCRREISKWKRVSKPSSAVRIQELQFKL---DAAT 308
Query: 187 ESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQ-SRIQWLREGDANSKFFHSVLASRRR 245
+ + E A + LS N WQ+ SRI W+R GD N+K+FH+ +RR
Sbjct: 309 KQIPFDRRELARL----KKELSQEYNNEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRA 364
Query: 246 RNSLCTIV-VDGVVVEGVHPIREAVFCHFENHFRSVNV-----ERPSLTNLQF*SLSVAE 299
+N + ++ +G + +F+ F S +V E +LT L +S
Sbjct: 365 QNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLTPL----VSDQM 420
Query: 300 GVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKL 359
L+ P + +EV+ A + + +K PGPDG+N ++FW + D+I V F R+G +
Sbjct: 421 NNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSI 480
Query: 360 SKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAF 419
+G+N T I LIPK+ +++ DFRPISL +YK++ KL+ANRL+ ++ S+IS+ Q+AF
Sbjct: 481 EEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAF 540
Query: 420 VKNRQILDGILIANE---AVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPV 476
VK R I D ILIA+E A+ K ++ + K D KAYD V+W +L+ M + F
Sbjct: 541 VKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFAD 600
Query: 477 LWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
W + I CV + VL+NG+P E RGLRQGDPL
Sbjct: 601 HWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPL 639
>gb|AAX95233.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1018
Score = 238 bits (606), Expect = 4e-61
Identities = 159/511 (31%), Positives = 249/511 (48%), Gaps = 7/511 (1%)
Query: 8 VCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF-KGDGKSMS 66
+ GDFN I ++ S + + F +D + +L L R FTW +G + +
Sbjct: 130 IIGDFNLIYRASDKNSDRLNRRM--MQRFRGLLDKIQVKELQLPVRRFTWAGEGANPTQT 187
Query: 67 RLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPS-RMLKCWTDIPGY 125
++DR ++ DW L++ + SDH PL L V E PS R W IPG+
Sbjct: 188 KIDRSFVTTDWDLMFESSNLYLLSSACSDHAPLFL-VGNEQRSKFPSFRFESFWLKIPGF 246
Query: 126 RQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLDEK 185
+ V + W+ ++ + + K + L LK W S ++ +++ + + LD
Sbjct: 247 LEAVQDSWQRPILATNCLAIFRIKLRCLARDLKRWSRSQVGDIKLQLAVASKVVFQLDIA 306
Query: 186 GESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVLASRRR 245
E+ L+D+E + + + IL+LS LN Q+SR WL+EGD NS FFH SRRR
Sbjct: 307 QETRTLSDDERLLVSNLKNRILALSVLNKIQIRQRSRQTWLKEGDVNSNFFHIKANSRRR 366
Query: 246 RNSLCTIVVDGVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*SLSVAEGVGLIK 305
+N + ++ + E + F+ S +R S N L + L +
Sbjct: 367 KNYIQSLHTPSGIAISAQDKEEELLRFFKERIGS-RFQRTSGINWNMMDLPSLDLGDLEE 425
Query: 306 PFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLS-KGIN 364
+ +E+K V+ K+PGPDG F K W + +++ V F L K +N
Sbjct: 426 DITEEELKKTVFSMPPEKAPGPDGFIGAFFKSAWEIINEDLLSTVRSFFDLNTLQIKDLN 485
Query: 365 STFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQ 424
S FI L+PK ++ +RPISL+ S KI++K+LANRL + ++S QSAFV+ R
Sbjct: 486 SAFICLLPKKEDALGAEHYRPISLIHSFSKIISKILANRLAPRLCELVSTNQSAFVRKRA 545
Query: 425 ILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKV 484
I D + V + KK L K+D KA+D+V W YL V+ + F + W WI
Sbjct: 546 IHDNFVFVKNMVQYLHRTKKTSLFIKIDIAKAFDTVCWPYLLEVLRQFGFGIRWLNWISN 605
Query: 485 CVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
++T+++ +L+NGS RGLRQGDPL
Sbjct: 606 LLATSSSQMLLNGSSGQSINHVRGLRQGDPL 636
>gb|AAX95130.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 930
Score = 238 bits (606), Expect = 4e-61
Identities = 159/511 (31%), Positives = 249/511 (48%), Gaps = 7/511 (1%)
Query: 8 VCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF-KGDGKSMS 66
+ GDFN I ++ S + + F +D + +L L R FTW +G + +
Sbjct: 42 IIGDFNLIYRASDKNSDRLNRRM--MQRFRGLLDKIQVKELQLPVRRFTWAGEGANPTQT 99
Query: 67 RLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPS-RMLKCWTDIPGY 125
++DR ++ DW L++ + SDH PL L V E PS R W IPG+
Sbjct: 100 KIDRSFVTTDWDLMFESSNLYLLSSACSDHAPLFL-VGNEQRSKFPSFRFESFWLKIPGF 158
Query: 126 RQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLDEK 185
+ V + W+ ++ + + K + L LK W S ++ +++ + + LD
Sbjct: 159 LEAVQDSWQRPILATNCLAIFRIKLRCLARDLKRWSRSQVGDIKLQLAVASKVVFQLDIA 218
Query: 186 GESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVLASRRR 245
E+ L+D+E + + + IL+LS LN Q+SR WL+EGD NS FFH SRRR
Sbjct: 219 QETRTLSDDERLLVSNLKNRILALSVLNKIQIRQRSRQTWLKEGDVNSNFFHIKANSRRR 278
Query: 246 RNSLCTIVVDGVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*SLSVAEGVGLIK 305
+N + ++ + E + F+ S +R S N L + L +
Sbjct: 279 KNYIQSLHTPSGIAISAQDKEEELLRFFKERIGS-RFQRTSGINWNMMDLPSLDLGDLEE 337
Query: 306 PFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLS-KGIN 364
+ +E+K V+ K+PGPDG F K W + +++ V F L K +N
Sbjct: 338 DITEEELKKTVFSMPPEKAPGPDGFIGAFFKSAWEIINEDLLSTVRSFFDLNTLQIKDLN 397
Query: 365 STFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQ 424
S FI L+PK ++ +RPISL+ S KI++K+LANRL + ++S QSAFV+ R
Sbjct: 398 SAFICLLPKKEDALGAEHYRPISLIHSFSKIISKILANRLAPRLCELVSTNQSAFVRKRA 457
Query: 425 ILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKV 484
I D + V + KK L K+D KA+D+V W YL V+ + F + W WI
Sbjct: 458 IHDNFVFVKNMVQYLHRTKKTSLFIKIDIAKAFDTVCWPYLLEVLRQFGFGIRWLNWISN 517
Query: 485 CVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
++T+++ +L+NGS RGLRQGDPL
Sbjct: 518 LLATSSSQMLLNGSSGQSINHVRGLRQGDPL 548
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 236 bits (603), Expect = 1e-60
Identities = 169/538 (31%), Positives = 267/538 (49%), Gaps = 41/538 (7%)
Query: 2 RGKNVCVCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF-KG 60
RG +C CGDFN + +E + + HF S +D+ L+DL G FTW K
Sbjct: 134 RGPWLC-CGDFNEVLCLDEHLGMRE-RSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQ 191
Query: 61 DGKSMS--RLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPS----- 113
D S S RLDR + + ++ + +CL + SDH + + ++ N G R
Sbjct: 192 DANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQRRIPIQQG 251
Query: 114 -RMLKCWTDIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLK---ISLKEWHASHS*NLL 169
R W YR+ V N W+ +S G L+ + +L+ +SLK+W + ++
Sbjct: 252 FRFEAAWLRAEDYREVVENSWR---ISSAGCVGLRGVWSVLQQVAVSLKDWSKASFGSVR 308
Query: 170 GKISDLKERLATLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREG 229
KI ++ +L +L + + ++ EE + + L + Q+SR+ WLREG
Sbjct: 309 RKILKMERKLKSLRQSPVNDVVIQEEKL----IEQQLCELFEKEEIMARQRSRVDWLREG 364
Query: 230 DANSKFFHSVLASRRRRNSLCTIVVDG----VVVEGVHPIREAVFCHFENHFRSVNVERP 285
D N+ FFH+ ++RRR N + +V D + EG+ + E + EN F S +
Sbjct: 365 DRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFY---ENLFSSEPCD-- 419
Query: 286 SLTNLQF*SLSVAEGVG------LIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFW 339
+++ ++ VG L K ++ +E+K A++ S K+PGPDG F + W
Sbjct: 420 ---SMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHW 476
Query: 340 LDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKL 399
L++ I V F ++ +G+ + + LIPKV+N L+ FRPISL LYKI +K+
Sbjct: 477 GILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKV 536
Query: 400 LANRLRVVIGSVISDAQSAFVKNRQILDGILIANEAVDEARKL--KKDLLLFKVDFEKAY 457
LANRL+ + ++S+ QSAFV R I D L+A E + RK K K+D KAY
Sbjct: 537 LANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNKNPFFALKIDMMKAY 596
Query: 458 DSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
D V+W YL + ++ F W + CVS+ +V +NG T RG+RQGDP+
Sbjct: 597 DRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPI 654
>gb|AAP44701.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918535|ref|XP_469664.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|40539049|gb|AAR87306.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1014
Score = 230 bits (586), Expect = 9e-59
Identities = 160/513 (31%), Positives = 251/513 (48%), Gaps = 11/513 (2%)
Query: 8 VCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF-KGDGKSMS 66
+ GDFN I ++ ++++ + F + I+ L +L L R FTW + D ++
Sbjct: 75 IMGDFNLIYEARDKNNLNLDRRL--MGRFKAAINRCELRELRLQNRRFTWSNERDAPTLE 132
Query: 67 RLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPSRMLKCWTDIPGYR 126
+LDR + D +++ N A SDHCPL+LS + R W PG+
Sbjct: 133 KLDRIFCNPDGDMLFSNHNLQALSSSNSDHCPLLLSPTHQLLRKPTFRFENFWPRPPGFL 192
Query: 127 QFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLDEKG 186
V W + L K K +L+ W + + + E + LD
Sbjct: 193 DTVQTAWSQPVSASHPVKRLSSKLKATAKALRSWSNRILSDSRIQFHLVNELILRLDIAQ 252
Query: 187 ESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVLASRRRR 246
E+ L+ E + + IL L+ + + Q+S + WL+EGDAN+KFFH + + R+
Sbjct: 253 ENRALSPLEISLRKDLKLQILGLAAVEKARRRQRSTLTWLKEGDANTKFFHLKVNACHRK 312
Query: 247 NSLCTIVVDGVVVEGVHPIREAVFCHFENHFRSVNVER-PSLTNLQF*SLSVAEGV--GL 303
N + + V+ E H +E HF S+ +R P L + L + + L
Sbjct: 313 NFIHKLHRGNVIPE-THEAKERAL---HEHFSSLMGQRLPRSCTLNWEELHLPQVTPEDL 368
Query: 304 IKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHR-NGKLSKG 362
PF+ ++V A+ + K+PGPDG F + W +K +I + +FH +G
Sbjct: 369 DSPFTEEDVWEAIKRMLAEKAPGPDGFTGTFFRCCWEVIKSDIMELLDKFHSLSGGNFGS 428
Query: 363 INSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKN 422
IN + LIPK ++ + D+RPISL+ SL K+LAK+LA RL I VIS AQSAF+
Sbjct: 429 INRATLILIPKKNDACTMGDYRPISLIHSLAKLLAKILAIRLSRQINKVISQAQSAFIIT 488
Query: 423 RQILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWI 482
R I D L + + + K+ L FK+D KA+DSV W YL +++ +M F WR W+
Sbjct: 489 RCIQDNFLYVSNLAKKMHRSKQPTLFFKLDIAKAFDSVSWEYLLTLLEKMGFSTRWRDWV 548
Query: 483 KVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
+ +ST+++ V +NG + RGLRQGDPL
Sbjct: 549 ALILSTSSSRVALNGIEGERIDHHRGLRQGDPL 581
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 230 bits (586), Expect = 9e-59
Identities = 166/523 (31%), Positives = 255/523 (48%), Gaps = 29/523 (5%)
Query: 7 CVCGDFNAIRSREERRSVSVGQVASDFS--HFNSFIDNNVLVDLPLGGRNFTWF--KGDG 62
C+ GDFN I E+ G SD FN I LV++P G FTW +GD
Sbjct: 98 CMFGDFNDILHNGEKNG---GPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDH 154
Query: 63 KSMSRLDRFLLSEDWCLVWPNCLQ-IAQMRGLSDHCPLILSVAEENWGPRPS-RMLKCWT 120
RLDR +++W +P Q RG SDH P+++ + R R K +
Sbjct: 155 WIQCRLDRAFGNKEWFCFFPVSNQTFLDFRG-SDHRPVLIKLMSSQDSYRGQFRFDKRFL 213
Query: 121 DIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLA 180
++ + W + + ++ + + SL W ++ N L KI+ L+ L
Sbjct: 214 FKEDVKEAIIRTWSRGKHGT--NISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAAL- 270
Query: 181 TLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVL 240
EK +S++ + + + D+ R + Q+SR +WLR G+ NSK+FH+ +
Sbjct: 271 ---EKEQSLVWPIFQRVSV--LKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAV 325
Query: 241 ASRRRRNSLCTIV-VDGVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*SL---- 295
R+R + + V+G + E +F N F+S N PS F L
Sbjct: 326 KQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSN---PSGFTDWFSGLVPRV 382
Query: 296 SVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHR 355
S L+ S E+K AV+ +PGPDG++ F + +W + +++ V +F
Sbjct: 383 SEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFA 442
Query: 356 NGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDA 415
+G + N T + LIPK +P + D RPISL LYKI++K++A RL+ + ++SD
Sbjct: 443 DGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDT 502
Query: 416 QSAFVKNRQILDGILIANEAVDEAR---KLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRM 472
QSAFV R I D IL+A+E V + ++ + + K D KAYD V+W YL S++ +
Sbjct: 503 QSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSL 562
Query: 473 SFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
F + W WI VCVS+ T SVL+N P +RGLRQGDPL
Sbjct: 563 GFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPL 605
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 230 bits (586), Expect = 9e-59
Identities = 166/523 (31%), Positives = 255/523 (48%), Gaps = 29/523 (5%)
Query: 7 CVCGDFNAIRSREERRSVSVGQVASDFS--HFNSFIDNNVLVDLPLGGRNFTWF--KGDG 62
C+ GDFN I E+ G SD FN I LV++P G FTW +GD
Sbjct: 95 CMFGDFNDILHNGEKNG---GPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDH 151
Query: 63 KSMSRLDRFLLSEDWCLVWPNCLQ-IAQMRGLSDHCPLILSVAEENWGPRPS-RMLKCWT 120
RLDR +++W +P Q RG SDH P+++ + R R K +
Sbjct: 152 WIQCRLDRAFGNKEWFCFFPVSNQTFLDFRG-SDHRPVLIKLMSSQDSYRGQFRFDKRFL 210
Query: 121 DIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLA 180
++ + W + + ++ + + SL W ++ N L KI+ L+ L
Sbjct: 211 FKEDVKEAIIRTWSRGKHGT--NISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAAL- 267
Query: 181 TLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVL 240
EK +S++ + + + D+ R + Q+SR +WLR G+ NSK+FH+ +
Sbjct: 268 ---EKEQSLVWPIFQRVSV--LKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAV 322
Query: 241 ASRRRRNSLCTIV-VDGVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*SL---- 295
R+R + + V+G + E +F N F+S N PS F L
Sbjct: 323 KQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSN---PSGFTDWFSGLVPRV 379
Query: 296 SVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHR 355
S L+ S E+K AV+ +PGPDG++ F + +W + +++ V +F
Sbjct: 380 SEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFA 439
Query: 356 NGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDA 415
+G + N T + LIPK +P + D RPISL LYKI++K++A RL+ + ++SD
Sbjct: 440 DGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDT 499
Query: 416 QSAFVKNRQILDGILIANEAVDEAR---KLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRM 472
QSAFV R I D IL+A+E V + ++ + + K D KAYD V+W YL S++ +
Sbjct: 500 QSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSL 559
Query: 473 SFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
F + W WI VCVS+ T SVL+N P +RGLRQGDPL
Sbjct: 560 GFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPL 602
>ref|NP_909894.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|12957722|gb|AAK09240.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1135
Score = 228 bits (581), Expect = 4e-58
Identities = 158/516 (30%), Positives = 249/516 (47%), Gaps = 7/516 (1%)
Query: 3 GKNVCVCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWFKGDG 62
G+ + GDFN I ++ + ++ + F + ID L ++PL + FTW
Sbjct: 240 GEGWLLFGDFNMIYRARDKNNGNLN--LARMRRFRATIDRCELREIPLQNKRFTWSNERQ 297
Query: 63 K-SMSRLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPSRMLKCWTD 121
+ ++ +LD +E+W L + + + A G SDHCPL+LS PRP R WT
Sbjct: 298 RPTLVKLDHCFCNENWDLAFHHHVLHALPTGPSDHCPLVLSNPAAPCKPRPFRFENFWTR 357
Query: 122 IPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLAT 181
I G++ V W + K + +K W S + + + +
Sbjct: 358 ISGFKDMVKASWTQPSPHTEPMRHINHKLQRTASCIKTWAKSLFTEVKIQFHMALDVIQR 417
Query: 182 LDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVLA 241
LD E L+ E + L+L+ + + Q SR+ +REG+AN+ FFH +
Sbjct: 418 LDVAQEHRDLSGPELRLRAALKRKTLTLATIERARKRQASRLTHIREGEANTMFFHLRVN 477
Query: 242 SRRRRNSLCTIVVD-GVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*SLSVAEG 300
+RRR+NS+ + + G VV H +E H RP+ N + + +
Sbjct: 478 ARRRKNSIQRLCKENGWVV--THDEKEMTILDHFAHLMGRPGPRPNELNWEALDIQPFDL 535
Query: 301 VGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLS 360
L + FS E+ A+ + K+PGPDG F K W +K+++ + S
Sbjct: 536 STLEESFSEQEIHRAIKEMPVDKAPGPDGYTGIFFKSCWDIVKEDVSLVFNSIFNLRCAS 595
Query: 361 KGI-NSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAF 419
G+ NS I LIPK + + ++D+RPISL+ + KI +KLLA RLR + S++S QSA
Sbjct: 596 LGLLNSANIVLIPKKEGAESVSDYRPISLIHIIAKIFSKLLALRLRPHMRSLVSINQSAL 655
Query: 420 VKNRQILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWR 479
+K R I D L + + +LLFK+D KA+DS+ W YL +++ + FPV WR
Sbjct: 656 IKGRSIHDNFLFVRNMTRRFHRTNRPMLLFKLDITKAFDSIRWDYLMALLQCLGFPVKWR 715
Query: 480 KWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
W+ + T+T+ VL+NG P + RGL QGDPL
Sbjct: 716 DWLGALLCTSTSQVLLNGIPGQKITHGRGLWQGDPL 751
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana] gi|7488321|pir||T01871
RNA-directed DNA polymerase homolog T24M8.8 -
Arabidopsis thaliana
Length = 1164
Score = 227 bits (579), Expect = 6e-58
Identities = 160/525 (30%), Positives = 255/525 (48%), Gaps = 26/525 (4%)
Query: 8 VCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWFKGDGKS--M 65
V GDFN I E + V F I L DL G FTW+ ++
Sbjct: 38 VLGDFNQILHPSEHSTSDGFNVDRPTRIFRETILLASLTDLSFRGNTFTWWNKRSRAPVA 97
Query: 66 SRLDRFLLSEDWCLVWPNCLQIAQMRGLSDH--CPLILSVAEENWGPRPSRMLKCWTDIP 123
+LDR L+++ W +P+ L + SDH C L L A +P R
Sbjct: 98 KKLDRILVNDKWTTTFPSSLGLFGEPDFSDHSSCELSLMSASPR-SKKPFRFNNFLLKDE 156
Query: 124 GYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLD 183
+ + KW S V+G Y + K K LK ++++ + SD+++R
Sbjct: 157 NFLSLICLKWFSTSVTGSAMYRVSVKLKALKKVIRDFSRDN-------YSDIEKRTKEAH 209
Query: 184 EK---GESMLLTDEECAEIHGVSSDILS----LSRLNTSICWQQSRIQWLREGDANSKFF 236
+ +S+LL C + ++ L+ S +Q+SR+ WLREGD NS +F
Sbjct: 210 DALLLAQSVLLASP-CPSNAAIEAETQRKWRILAEAEASFFYQRSRVNWLREGDMNSSYF 268
Query: 237 HSVLASRRRRNSLCTIVVD-GVVVEGVHPIREAVFCHFENHFRSVN----VERPSLTNLQ 291
H + ++R+ N + + G +EG + +F+++ S E+ ++NL
Sbjct: 269 HKMASARQSLNHIHFLSDPVGDRIEGQQNLENHCVEYFQSNLGSEQGLPLFEQADISNLL 328
Query: 292 F*SLSVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVS 351
S A+ V L PFS +++K A + K+ GPDG + F W + E+ +
Sbjct: 329 SYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIH 388
Query: 352 EFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSV 411
EF +GKL K N+T + LIPK+ N ++DFRPIS + ++YK+++KLL +RL+ + +
Sbjct: 389 EFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAA 448
Query: 412 ISDAQSAFVKNRQILDGILIANEAVDEARKLK-KDLLLFKVDFEKAYDSVDWGYLDSVMG 470
IS +QSAF+ R L+ +L+A E V K + KVD KA+DSV W ++ S +
Sbjct: 449 ISHSQSAFMPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALR 508
Query: 471 RMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
++ P + WI C+STA+ SV++NG F +GLRQGDP+
Sbjct: 509 ALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPM 553
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 227 bits (578), Expect = 8e-58
Identities = 162/532 (30%), Positives = 266/532 (49%), Gaps = 29/532 (5%)
Query: 3 GKNVCVCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF-KGD 61
G++ V GDFN I + E + ++G+ F S + ++ L DL G ++TW+ K
Sbjct: 136 GRSWIVLGDFNQILNPESAINANIGR---KIRAFRSCLLDSDLYDLVYKGSSYTWWNKCS 192
Query: 62 GKSMSR-LDRFLLSEDWCLVWPNCLQIAQMRGLSDH--CPLILSVAEENWGPRPSRMLKC 118
+ +++ +DR L+++ W ++P+ SDH C ++L A RP R
Sbjct: 193 SRPLAKKIDRILVNDHWNTLFPSAYANFGEPDFSDHSSCEVVLDPAVLK-AKRPFRFFNY 251
Query: 119 WTDIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISD---- 174
+ P + Q + W S VSG Y + +K K LK+ + + + ++ ++S+
Sbjct: 252 FLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIEKRVSEAHAI 311
Query: 175 -LKERLATLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANS 233
L + TL + E + L++ S Q+S I WL EGD N+
Sbjct: 312 VLHRQRITLTNPSVVHATLELEATRKWQI------LAKAEESFFCQKSSISWLYEGDNNT 365
Query: 234 KFFHSVLASRRRRNSLCTIVVD-GVVVEGVHPIREAVFCHFENHFRSV--------NVER 284
+FH + R+ N++ ++ D G +E I+E + H N F S+ ++ +
Sbjct: 366 AYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGENSLAQ 425
Query: 285 PSLTNLQF*SLSVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKD 344
+ L SV + L + FS +++ A + K+ GPDG + F K W +
Sbjct: 426 SDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGP 485
Query: 345 EIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRL 404
E+ V EF R+G+L K N+T + LIPK+ N ++ DFRPIS + +LYK++AKLL +RL
Sbjct: 486 EVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRL 545
Query: 405 RVVIGSVISDAQSAFVKNRQILDGILIANEAVDEAR-KLKKDLLLFKVDFEKAYDSVDWG 463
+ ++ VIS +QSAF+ R + + +L+A E V K + KVD KA+DSV W
Sbjct: 546 KKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWD 605
Query: 464 YLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
++ S ++ P + WI C+ST SV+VNGS + F +GLRQGDPL
Sbjct: 606 FIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPL 657
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 227 bits (578), Expect = 8e-58
Identities = 162/532 (30%), Positives = 266/532 (49%), Gaps = 29/532 (5%)
Query: 3 GKNVCVCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF-KGD 61
G++ V GDFN I + E + ++G+ F S + ++ L DL G ++TW+ K
Sbjct: 136 GRSWIVLGDFNQILNPESAINANIGR---KIRAFRSCLLDSDLYDLVYKGSSYTWWNKCS 192
Query: 62 GKSMSR-LDRFLLSEDWCLVWPNCLQIAQMRGLSDH--CPLILSVAEENWGPRPSRMLKC 118
+ +++ +DR L+++ W ++P+ SDH C ++L A RP R
Sbjct: 193 SRPLAKKIDRILVNDHWNTLFPSAYANFGEPDFSDHSSCEVVLDPAVLK-AKRPFRFFNY 251
Query: 119 WTDIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISD---- 174
+ P + Q + W S VSG Y + +K K LK+ + + + ++ ++S+
Sbjct: 252 FLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIEKRVSEAHAI 311
Query: 175 -LKERLATLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANS 233
L + TL + E + L++ S Q+S I WL EGD N+
Sbjct: 312 VLHRQRITLTNPSVVHATLELEATRKWQI------LAKAEESFFCQKSSISWLYEGDNNT 365
Query: 234 KFFHSVLASRRRRNSLCTIVVD-GVVVEGVHPIREAVFCHFENHFRSV--------NVER 284
+FH + R+ N++ ++ D G +E I+E + H N F S+ ++ +
Sbjct: 366 AYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGENSLAQ 425
Query: 285 PSLTNLQF*SLSVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKD 344
+ L SV + L + FS +++ A + K+ GPDG + F K W +
Sbjct: 426 SDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGP 485
Query: 345 EIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRL 404
E+ V EF R+G+L K N+T + LIPK+ N ++ DFRPIS + +LYK++AKLL +RL
Sbjct: 486 EVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRL 545
Query: 405 RVVIGSVISDAQSAFVKNRQILDGILIANEAVDEAR-KLKKDLLLFKVDFEKAYDSVDWG 463
+ ++ VIS +QSAF+ R + + +L+A E V K + KVD KA+DSV W
Sbjct: 546 KKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWD 605
Query: 464 YLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
++ S ++ P + WI C+ST SV+VNGS + F +GLRQGDPL
Sbjct: 606 FIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPL 657
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078. [Arabidopsis
thaliana] gi|25518658|pir||F86436 hypothetical protein
F28K20.4 - Arabidopsis thaliana
Length = 1253
Score = 226 bits (577), Expect = 1e-57
Identities = 163/528 (30%), Positives = 247/528 (45%), Gaps = 18/528 (3%)
Query: 3 GKNVCVCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWFKGDG 62
GK + GDFN + E + V F + L DL G FTW+
Sbjct: 85 GKPWIMLGDFNQVLCPAEHSQATSLNVNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSA 144
Query: 63 KS--MSRLDRFLLSEDWCLVWPNCLQIAQMRGLSDH--CPLILSVAEENWGPRPSRMLKC 118
+LDR L++E WC +P+ + SDH C +I++ RP R
Sbjct: 145 TRPVAKKLDRILVNESWCSRFPSAYAVFGEPDFSDHASCGVIINPLMHR-EKRPFRFYNF 203
Query: 119 WTDIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKER 178
P + V W S V G + + +K K LK ++ + + NL ++ +
Sbjct: 204 LLQNPDFISLVGELWYSINVVGSSMFKMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNL 263
Query: 179 LATLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHS 238
+ K S E+ ++ + + C Q+SR+ W+ EGD+N+ +FH
Sbjct: 264 VLYRQNKTLSDPTIPNAALEMEAQRKWLILVKAEESFFC-QRSRVTWMGEGDSNTSYFHR 322
Query: 239 VLASRRRRNSLCTIVVD-GVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*SL-- 295
+ SR+ N++ I+ D GV ++ I+E +F N V P L F L
Sbjct: 323 MADSRKAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLLGG-EVGPPMLIQEDFDLLLP 381
Query: 296 ---SVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSE 352
S + L FS ++K+A + S K+ GPDG F KE W + E+ VSE
Sbjct: 382 FRCSHDQKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSE 441
Query: 353 FHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVG----SLYKILAKLLANRLRVVI 408
F + L K N+T + LIPK+ N ++NDFRPIS +LYK++A+LL NRL+ ++
Sbjct: 442 FFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLL 501
Query: 409 GSVISDAQSAFVKNRQILDGILIANEAVDEARKLKKDLL-LFKVDFEKAYDSVDWGYLDS 467
VIS QSAF+ R + + +L+A E V + D + KVD KA+DS+ W ++ S
Sbjct: 502 SQVISPFQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIIS 561
Query: 468 VMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
+ + P + WI C+ST T SV VNG+ F RGLRQG+PL
Sbjct: 562 ALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPL 609
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 226 bits (576), Expect = 1e-57
Identities = 153/519 (29%), Positives = 256/519 (48%), Gaps = 16/519 (3%)
Query: 6 VCVCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF-KGDGKS 64
V + GDFN + E+ + ++ D FN FI + L ++ + G FTW K +
Sbjct: 755 VMLGGDFNLYKFASEKSNSNIDVRCMDM--FNKFISDLDLREVHIIGPKFTWTNKQYCPT 812
Query: 65 MSRLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGP-RPSRMLKCWTDIP 123
LDR L+S+DW +PN L + +R SDH PL+L E R R W +
Sbjct: 813 QEVLDRILVSDDWDDRYPNSLISSVLRVGSDHTPLLLDTYELVVEKCRYFRFESAWLAVE 872
Query: 124 GYRQFVSNKWKSFQVSGWGGYVLK---EKFKLLKISLKEWHAS-HS*NLLGKISDLKERL 179
G++ V K+ G Y+L+ +K ++ L W + S + K+S L+++L
Sbjct: 873 GFKDLVGKKFPDRD----GSYILEFWNKKQVEMRRFLTGWGINKQSEDRRAKLS-LQKKL 927
Query: 180 ATLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSV 239
+D K L +E + + + + L ++ QWL EGD N++++H +
Sbjct: 928 EEIDSKAVDAELNADEWRHRYELEDALEHIYELEELYWHKRCGEQWLLEGDRNTEYYHRI 987
Query: 240 LASRRRRNSLCTIVVDGVVVEGVHPIREAVFCHFENHFRSVNVERPSLTN---LQF*SLS 296
R++R ++ +++ + ++ + ++++ FRS + L+ + L
Sbjct: 988 ANGRKKRCTITSLMDGDRELTTKEDLKHHIVEYYKSLFRSESSSSIHLSQGVWVDSLCLK 1047
Query: 297 VAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRN 356
+ L++PF+I+E+ + + + GPDG + F + FW L+ ++F + +
Sbjct: 1048 EEDKNTLMRPFTIEELYKVLREAKPNTAFGPDGFSIPFYRAFWPQLRPDLFEMLLMLYNE 1107
Query: 357 GKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQ 416
K +N I+LIPK NP + FRPI ++ +K ++K + NRL + VIS Q
Sbjct: 1108 ELDLKRLNFGVISLIPKNSNPTDIKQFRPICVLNDCFKFISKCVCNRLTEIARDVISPTQ 1167
Query: 417 SAFVKNRQILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPV 476
+AF+ R IL+G +I +E + E + + ++ K+DFEKAYD V W +L VM R FP
Sbjct: 1168 TAFIPGRFILEGCVIIHEVLHEMNRKNLEGIILKIDFEKAYDKVSWDFLIEVMVRKGFPS 1227
Query: 477 LWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
W WIK CV + +NG TD F RGLRQGDPL
Sbjct: 1228 KWVNWIKTCVMGGRVCININGERTDFFRTFRGLRQGDPL 1266
>emb|CAD40197.1| OSJNBb0043H09.5 [Oryza sativa (japonica cultivar-group)]
gi|50921821|ref|XP_471271.1| OSJNBb0043H09.5 [Oryza
sativa (japonica cultivar-group)]
Length = 858
Score = 225 bits (573), Expect = 3e-57
Identities = 146/488 (29%), Positives = 241/488 (48%), Gaps = 8/488 (1%)
Query: 31 SDFSHFNSFIDNNVLVDLPLGGRNFTWFKGDGKSM-SRLDRFLLSEDWCLVWPNCLQIAQ 89
+D FN I N L +LPL GR +TW + + +LD F S W +++PN + A
Sbjct: 2 NDIMVFNELISNIDLQELPLKGRTYTWSNMQSQPLLQQLDWFFTSPSWTVLYPNTMVTAL 61
Query: 90 MRGLSDHCPLILSVAEENWGPRPS--RMLKCWTDIPGYRQFVSNKWKSFQVSGWGGYVLK 147
+ +SDH P E P+ R W ++PG+ + V W + G ++
Sbjct: 62 SKCISDHTPY----PSETTVPKTDIFRFENFWVELPGFIEVVKLFWDIPVRADSQGKIIN 117
Query: 148 EKFKLLKISLKEWHASHS*NLLGKISDLKERLATLDEKGESMLLTDEECAEIHGVSSDIL 207
KFK L+ LK W S NL I + E + LD E L E + V + IL
Sbjct: 118 GKFKNLRRGLKIWSKRLS-NLNTLIGNSHEAIDFLDNIEEQRPLFIHEWNFRNIVKNHIL 176
Query: 208 SLSRLNTSICWQQSRIQWLREGDANSKFFHSVLASRRRRNSLCTIVVDGVVVEGVHPIRE 267
L ++ ++W++ GD N+KFFH+ R R+N + + ++ + H +
Sbjct: 177 KLLHYRNIFWKKRCTMRWVKFGDENTKFFHASATQRYRQNKISHLTLNDGTIITSHQEKA 236
Query: 268 AVFCHFENHFRSVNVERPSLTNLQF*SLSVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGP 327
F +F + NL +A L S E+++ + K+PGP
Sbjct: 237 HAFLNFYKGRMGTSEGIQMAINLTELITPLAGLENLSNMPSRQELESIMKAMPIDKAPGP 296
Query: 328 DGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPIS 387
DG N F+K+ W + ++ ++ EF + +N++FI LIPK +P+ ND+RPIS
Sbjct: 297 DGFNGMFMKKCWNIIAEDFYKLAREFFGLQSSIQNLNNSFICLIPKKSSPETANDYRPIS 356
Query: 388 LVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQILDGILIANEAVDEARKLKKDLL 447
+ K L+K+LA RL+ VI ++ + Q F+K R I D + E + + + KK ++
Sbjct: 357 VQNMSIKFLSKILAERLQAVILDLLHENQYGFIKQRTIQDCLAWTFEFLHQCHQSKKQIV 416
Query: 448 LFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRR 507
+ K+DFEKA+DSV+ + +V+ F W KWI ++T++++VL+NG P F ++
Sbjct: 417 ILKIDFEKAFDSVEHSSILAVLKAKGFNETWLKWISDLLTTSSSAVLLNGIPGKNFKCQK 476
Query: 508 GLRQGDPL 515
G++QGDP+
Sbjct: 477 GVKQGDPI 484
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.140 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 868,985,496
Number of Sequences: 2540612
Number of extensions: 36151610
Number of successful extensions: 131046
Number of sequences better than 10.0: 996
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 271
Number of HSP's that attempted gapping in prelim test: 129080
Number of HSP's gapped (non-prelim): 1183
length of query: 515
length of database: 863,360,394
effective HSP length: 133
effective length of query: 382
effective length of database: 525,458,998
effective search space: 200725337236
effective search space used: 200725337236
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 77 (34.3 bits)
Medicago: description of AC146758.6