BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146757.4 - phase: 0 /pseudo
(755 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 327 1e-87
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 273 1e-71
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 248 4e-64
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 244 6e-63
ref|NP_909558.1| putative reverse transcriptase [Oryza sativa] g... 242 3e-62
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 241 8e-62
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 240 1e-61
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 240 1e-61
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 239 3e-61
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 235 5e-60
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 234 8e-60
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 234 8e-60
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 232 3e-59
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 232 4e-59
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 231 5e-59
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 230 1e-58
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 230 1e-58
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 229 2e-58
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 227 1e-57
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 218 8e-55
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 327 bits (837), Expect = 1e-87
Identities = 174/457 (38%), Positives = 262/457 (57%), Gaps = 12/457 (2%)
Query: 6 IMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRYGPQI 65
++WNGE+TD+F RG+RQGDPLSPYLFV+C++RL H+I V + W P+ G ++
Sbjct: 480 VLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKL 539
Query: 66 SHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLREDIL 125
SH+ FADDL+LFAEAS+ Q + L+ FC+ASGQK++ K+ ++FS NV ++ + I
Sbjct: 540 SHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLIS 599
Query: 126 HHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRITLAKSV 185
+G LG YLG + R + F ++ ++ ++L GWK + L+LAGRITL K+V
Sbjct: 600 EESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAV 659
Query: 186 ISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADGGLGFR 245
+S+IP + M +P + D +D+ R F+WG + + +K HL+SW C PKA+GG+G R
Sbjct: 660 LSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLR 719
Query: 246 QTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKY--GRNNDLIASINAHPYDSPLWKAL-V 302
MN+A + K+ W L+++ E LW RV+R KY G D + + P S W+++ V
Sbjct: 720 SARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQD-TSWLKPQPRWSSTWRSVAV 778
Query: 303 NIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMD---ITLSVRDVLSPSG 359
+ V W GDG FWLD+W+ E L+ +G + I ++ D P
Sbjct: 779 GLREVVVKGVGWVPGDGCTIRFWLDRWL-LQEPLVELGTDMIPEGERIKVAA-DYWLPGS 836
Query: 360 DWNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQHQDC--- 416
WN++ L LP ++L++ + D I W GT FTV+SAYSL D
Sbjct: 837 GWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDR 896
Query: 417 PILEGDWKSIWKWHGPHRIQTFIWLDTHERILTNFQR 453
P + + IWK P R++ FIWL + I+TN +R
Sbjct: 897 PNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVER 933
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 273 bits (699), Expect = 1e-71
Identities = 157/454 (34%), Positives = 241/454 (52%), Gaps = 34/454 (7%)
Query: 3 EYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRYG 62
E ++WNGEKTD+F RG+RQGDP+SPYLFV+C++RL H I V W + + G
Sbjct: 429 EMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSISISQGG 488
Query: 63 PQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLRE 122
P++SH+ FADDL+LFAEAS+ QK++ K+ ++FS NV L
Sbjct: 489 PKVSHVCFADDLILFAEASV-----------------AQKVSLEKSKIFFSNNVSRDLEG 531
Query: 123 DILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRITLA 182
I TG LG YLG + R + F ++ ++ S+L+GWK + L+LAGRITL
Sbjct: 532 LITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAGRITLT 591
Query: 183 KSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADGGL 242
K+V+ +IP + M +P ++ +++DK+ R F+WG + + RK HL+SW C PKA GGL
Sbjct: 592 KAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGL 651
Query: 243 GFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYDSPLWKALV 302
G R + MN A L K+ W L+ + LW RVLR KY + D+ +DS W
Sbjct: 652 GLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKY-KVTDV--------HDSS-WLVPK 701
Query: 303 NIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSPSGDWN 362
W+ + + +G + L + + + + + ++ V + + W+
Sbjct: 702 ATWSSTWRSIGVGLREGVAKGWILHEPLCTRATCL----LSPEELNARVEEFWTEGVGWD 757
Query: 363 IDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSL---QHQDCPIL 419
+ L LP + +++ A+ I D I W GT+ FTV SAY L + + P +
Sbjct: 758 MVKLGQCLPRSVTDRLHAVVIKGVLGLRDRISWQGTSDGDFTVGSAYVLLTQEEESKPCM 817
Query: 420 EGDWKSIWKWHGPHRIQTFIWLDTHERILTNFQR 453
E +K IW P R++ F+WL + I+TN +R
Sbjct: 818 ESFFKRIWGVIAPERVRVFLWLVGQQVIMTNVER 851
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25411313|pir||C84487 hypothetical protein
At2g07650 [imported] - Arabidopsis thaliana
Length = 732
Score = 248 bits (634), Expect = 4e-64
Identities = 141/415 (33%), Positives = 223/415 (52%), Gaps = 12/415 (2%)
Query: 48 VEAKYWIPMRAGRYGPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNK 107
+ K W P+ + GP++SH+ FADDL+LFAEAS+ Q + L+ FC ASGQK++ K
Sbjct: 184 IARKDWKPISLSQGGPKLSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEK 243
Query: 108 TCVYFSKNVDTQLREDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNG 167
+ ++FS+NV L + I +G + LG YLG + R + F I+ K+ ++L G
Sbjct: 244 SKIFFSENVSRDLGKLISDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAG 303
Query: 168 WKQQCLTLAGRITLAKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHL 227
WK + L+LAGR+TL K+V+S+IP + M +PK+ D +DK+ R F+WG S RK HL
Sbjct: 304 WKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHL 363
Query: 228 ISWDVCCLPKADGGLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLI-- 285
ISW C P+++GGLG R+ MN+A L K+ W LI++ LW R++R Y R D+
Sbjct: 364 ISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNY-RVQDVRDG 422
Query: 286 ASINAHPYDSPLWKAL-VNIWNDFKGHVVWNIGDGRNTNFWLDKW---VPNNESLMSIGN 341
A S W+++ + + + W IGDGR FW+DKW +P E L+
Sbjct: 423 AWTKVRSVCSSTWRSVALGMREVVIPGLSWVIGDGREILFWMDKWLTNIPLAELLVQEPP 482
Query: 342 QTYMDITLSVRDVLSPSGDWNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTH 401
+ + RD+ W++ + + + Q+ + + + D I WG +
Sbjct: 483 AGWKG--MRARDLRRNGIGWDMATIAPYISSYNRLQLQSFVLDDITGARDRISWGESQDG 540
Query: 402 HFTVQSAYS-LQHQDCP--ILEGDWKSIWKWHGPHRIQTFIWLDTHERILTNFQR 453
F V + YS L + P ++ + +W P R++ F+WL + I+TN +R
Sbjct: 541 RFKVSTTYSFLTRDEAPRQDMKRFFDRVWSVTAPERVRLFLWLVAQQAIMTNQER 595
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 244 bits (624), Expect = 6e-63
Identities = 142/448 (31%), Positives = 228/448 (50%), Gaps = 11/448 (2%)
Query: 2 IEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRY 61
++Y ++ NG+ RG+RQGDPLSPYLF++C + L I ++
Sbjct: 397 VQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATP 456
Query: 62 GPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLR 121
P +SHLLFADD L F +A+ EQ +L L + SGQ+IN +K+ + F V+ ++
Sbjct: 457 SPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIK 516
Query: 122 EDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRITL 181
DI G + + +G YLG + G S F+ + +++QS++NGW + L+ G+ +
Sbjct: 517 ADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVM 576
Query: 182 AKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADGG 241
KSV +T+P Y M ++PK I ++ F W + R H ++WD C K+DGG
Sbjct: 577 IKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGG 636
Query: 242 LGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYDSPLWKAL 301
LGFR N A L K LW LI P+ L+ +V + +Y R ++ + SI ++ S W+++
Sbjct: 637 LGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYS-PSYGWRSM 695
Query: 302 VNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVL-SPSGD 360
++ + ++ +G G + + W D W+P + + +D +L V+ ++ S S
Sbjct: 696 ISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNF 755
Query: 361 WNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQHQDC---- 416
WNID L V I AL I N + DT+GW T ++TV+S Y D
Sbjct: 756 WNIDLLKELFDPEDVPLISALPIGN-PNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGT 814
Query: 417 ----PILEGDWKSIWKWHGPHRIQTFIW 440
P L IWK P +++ F+W
Sbjct: 815 TLIGPDLTTLKAYIWKVQCPPKLRHFLW 842
>ref|NP_909558.1| putative reverse transcriptase [Oryza sativa]
gi|14018103|gb|AAK52166.1| putative reverse
transcriptase [Oryza sativa]
Length = 1185
Score = 242 bits (618), Expect = 3e-62
Identities = 146/460 (31%), Positives = 230/460 (49%), Gaps = 26/460 (5%)
Query: 2 IEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRY 61
++Y + +NG T+ +RG+RQGDPLSPYLF++ + LS M+ + +R R
Sbjct: 431 VQYRVNFNGVLTEVIKPSRGLRQGDPLSPYLFLLVAEGLSSMLQGAENRGDLVGIRVCRE 490
Query: 62 GPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLR 121
P ISHLLFADD L+ +A A + LDI+CQ SGQKI+ K+ ++FS+N + +
Sbjct: 491 APMISHLLFADDSLILMQADKNNADHLKAILDIYCQNSGQKISEAKSSIFFSRNTAVEDK 550
Query: 122 EDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRITL 181
+ YLG G F H+++++ +++NG K++ L+ G+ L
Sbjct: 551 AAVCGSLDIMTEALNDKYLGLPAMIGVDKSDCFRHLIDRVNNRINGRKEKMLSTGGKEVL 610
Query: 182 AKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADGG 241
KS+ IP + M +IPK ICD I + F WGD + R+ H +W C+PK GG
Sbjct: 611 IKSIAQAIPVFAMSVFRIPKKICDCISEAIARFWWGDDENHRRIHWKAWWRMCIPKQRGG 670
Query: 242 LGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYDSPLWKAL 301
LGFR + N A L K +W + +P+ L RV+R KY + +++ + S W+++
Sbjct: 671 LGFRDLYCFNRAMLAKQIWRFLCDPDSLCARVMRCKYYPDGNILRA-RPKKGSSYAWQSI 729
Query: 302 VNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSP-SGD 360
++ FKG+ +W IGDG N W D +P++ S + +I V ++++P SG
Sbjct: 730 LSGSECFKGY-IWRIGDGSQVNIWEDSLIPSS-SNGKVLTPRGRNIITKVEELINPVSGG 787
Query: 361 WNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQ-------- 412
W+ D + N+I L IP D + W T + F+V+SAY Q
Sbjct: 788 WDEDLIDTLFWPIDANRI--LQIPISAGREDFVAWHHTRSGIFSVRSAYHCQWNAKFGSK 845
Query: 413 --------HQDCPILEGDWKSIWKWHGPHRIQTFIWLDTH 444
P+ W ++WK P +I+ F W H
Sbjct: 846 ERLPDGASSSSRPV----WDNLWKLEIPPKIKIFAWRMLH 881
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 241 bits (614), Expect = 8e-62
Identities = 140/463 (30%), Positives = 232/463 (49%), Gaps = 17/463 (3%)
Query: 1 NIEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGR 60
++ Y + NG + F+ TRG+R+GDPL+PYLF+ D LS+++ + + + P++ R
Sbjct: 600 SVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFLFIADGLSNILQRRRDERQIQPLKVCR 659
Query: 61 YGPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQL 120
P +SHLLFADD LLF +A + QA + LD++ + +GQ IN + + FS +
Sbjct: 660 SAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINPKECSLLFSALCPQER 719
Query: 121 REDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRIT 180
++ I + LG GR +F I + + +L W ++ L+LAG+
Sbjct: 720 QDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLTDWSERFLSLAGKEA 779
Query: 181 LAKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADG 240
L KSV +P Y M K+P+ C+E +++ R F WG +K H I+W+ PK G
Sbjct: 780 LIKSVAQALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGEKKVHWIAWEKLTSPKLLG 839
Query: 241 GLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHP-YDSPLWK 299
GLGFR N+A L + W LI++P+ L RVL++KY N + + A P SP WK
Sbjct: 840 GLGFRDIRCFNQALLARQAWRLIESPDSLCARVLKAKYYPNGTI--TDTAFPSVSSPTWK 897
Query: 300 ALVNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSPSG 359
+V+ K ++W IGDG T W + WV + E+L + +T+ + +++ +
Sbjct: 898 GIVHGLELLKKGLIWRIGDGSKTKIWRNHWVAHGENLKILEKKTWNRVIYVRELIVTDTK 957
Query: 360 DWNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSL-------Q 412
WN + + + ++IL + IP ++ D W T F+V+S Y L
Sbjct: 958 TWNEPLIRHIIREEDADEILKIRIPQREE-EDFPAWHYEKTGIFSVRSVYRLAWNLARKT 1016
Query: 413 HQDCPILEGD------WKSIWKWHGPHRIQTFIWLDTHERILT 449
+ G W ++WK + +++ F W +R+ T
Sbjct: 1017 SEQASSSSGGADGRKIWDNVWKANVQPKVRVFAWKLAQDRLAT 1059
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 240 bits (613), Expect = 1e-61
Identities = 147/462 (31%), Positives = 232/462 (49%), Gaps = 20/462 (4%)
Query: 2 IEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRY 61
+ Y I NGE +++F RG+RQGDPLSPYLF++C + S +++ E +R +
Sbjct: 814 VTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQG 873
Query: 62 GPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLR 121
P +SHLLFADD L+ A+ +A + L I+ + SGQ IN++K+ V FS N + +
Sbjct: 874 APSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEK 933
Query: 122 EDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRITL 181
++ + + YLG + GRS F+++ +I ++ GWK++ L+ AG+ L
Sbjct: 934 GAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEIL 993
Query: 182 AKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADGG 241
K+V IP + M ++ K +CD+I K+ + W + ++ K H +SW+ LPK GG
Sbjct: 994 IKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGG 1053
Query: 242 LGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYDSPLWKAL 301
LGFR + N A L K W LI++P+ L RVLR+KY D S W+++
Sbjct: 1054 LGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNV-SYTWRSI 1112
Query: 302 VNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSP-SGD 360
+ ++W +GDG N W D W+P S + ++ V +++ P +G
Sbjct: 1113 QKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRKPM-TPRGANLVTKVEELIDPYTGT 1171
Query: 361 WNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQHQ------ 414
W+ D L V I SIP + D + W FTV+SAY +Q +
Sbjct: 1172 WDEDLLSQTFWEEDVAAI--KSIPVHVEMEDVLAWHFDARGCFTVKSAYKVQREMERRAS 1229
Query: 415 --DCPIL----EGD---WKSIWKWHGPHRIQTFIWLDTHERI 447
CP + GD WK +WK P +I+ F+W H +
Sbjct: 1230 RNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTL 1271
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 240 bits (612), Expect = 1e-61
Identities = 151/460 (32%), Positives = 233/460 (49%), Gaps = 35/460 (7%)
Query: 2 IEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRY 61
+ Y + +NG TF +RG+ QG PLSP+LF+ D L ++ D+V P++ R
Sbjct: 124 VRYSVKFNGTLLSTFAPSRGLCQGVPLSPFLFLFIADGLPLLLEDKVAQGALSPVKICRQ 183
Query: 62 GPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLR 121
P ISHLLFADD LLF +A QA V + + A+GQ IN K + F ++ Q R
Sbjct: 184 APGISHLLFADDTLLFFKADNVQAQAVKEVITDYALATGQLINPAKCSIMFGESSPPQTR 243
Query: 122 EDI-----LHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLA 176
+ I + ++GF YLG GR +GKF + +I +L W + L+
Sbjct: 244 DVIRVTLQIANSGFED-----RYLGFPTPEGRMCKGKFQSLQERIWKRLIIWGENLLSSG 298
Query: 177 GRITLAKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLP 236
G+ L KSVI TIP Y M +P+++C+E+ K+ R F WG RK H SW+ P
Sbjct: 299 GKEVLIKSVIQTIPVYVMGIFNLPESVCEELTKLTRNFWWGVEKGKRKTHWKSWECLTRP 358
Query: 237 KADGGLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLI-ASINAHPYDS 295
K++GGLGFR N+A L + W LI NP+ L RVL++KY N L+ S + S
Sbjct: 359 KSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCARVLKAKYFPNGSLVDTSFGGNA--S 416
Query: 296 PLWKALVNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVL 355
P+WKA+ + K ++W IG+G++ W D W+P + S I + + V ++L
Sbjct: 417 PVWKAIEYGLSLLKEGIIWRIGNGKSVRIWRDPWLPRDFSRRPITRKGNCRLKW-VSELL 475
Query: 356 SPSGDWNIDFLINN--LPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQH 413
S +G W+ + +N LP + I ++ + + + D + W F+V+SAY L
Sbjct: 476 SENGAWD-ETRVNQVFLPVD-AEAICSIRVSSRQE-DDFVAWHPDKHGKFSVRSAYGLA- 531
Query: 414 QDCPILEGD-------------WKSIWKWHGPHRIQTFIW 440
C ++ + W IW+ + P +++ F W
Sbjct: 532 --CNLVNMETSSSSSSARCKRMWNLIWQTNAPQKVRIFAW 569
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 239 bits (609), Expect = 3e-61
Identities = 141/461 (30%), Positives = 230/461 (49%), Gaps = 23/461 (4%)
Query: 2 IEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRY 61
+ Y + NG +TF +RG+RQGDPLSP+LF+ D LS ++ ++V+ P+ R+
Sbjct: 1227 VRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEKVDQGAMNPIHICRH 1286
Query: 62 GPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLR 121
P + HLLFADD LF +A+ +QA + L+ + +GQ IN +K + F ++ T ++
Sbjct: 1287 APAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLINPSKCSIMFGQSSPTAVQ 1346
Query: 122 EDILHHTGFNQVNSL-GMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRIT 180
I + NS YLG GR +GKF + ++ ++ W ++ L+ G+
Sbjct: 1347 NQIKQTLQIS--NSFEDKYLGFPTPEGRMTKGKFQSLQERLWKRIMLWGEKFLSTGGKEI 1404
Query: 181 LAKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADG 240
L K+V+ +P Y M K+P+++C+E+ K+ R F WG R+ H SWD K G
Sbjct: 1405 LIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWWGAEKGMRRTHWKSWDCLIAQKLKG 1464
Query: 241 GLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLI-ASINAHPYDSPLWK 299
G+GFR N+A L + W L+ P+ L R+L++ Y N LI S + SP W+
Sbjct: 1465 GMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAIYYPNGSLIDTSFGGNA--SPGWR 1522
Query: 300 ALVNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSPSG 359
A+ K ++W IG+G++ W D W+P + S I + + V D++ SG
Sbjct: 1523 AIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPISAKRNCRLRW-VSDLIDQSG 1581
Query: 360 DWNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQHQDCPIL 419
W+ D + + IL + + + + D I W F+V+SAY L +
Sbjct: 1582 SWDTDKISQHFLPMDAEAILNIRLSSRLE-DDFIAWHPDKLGRFSVRSAYHLAVALAHVD 1640
Query: 420 EGD----------WKSIWKWHGPHRIQTFIWLDTHERILTN 450
EG W ++WK + P +++ F W R +TN
Sbjct: 1641 EGSSSSGNGNSRAWNALWKCNAPQKVKIFAW-----RAITN 1676
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 235 bits (599), Expect = 5e-60
Identities = 144/455 (31%), Positives = 224/455 (48%), Gaps = 25/455 (5%)
Query: 2 IEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRY 61
+ Y + +NG +F TRG+RQG+PLSP+LF+ D LS ++ ++V P++ R
Sbjct: 1253 VRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLSLLLKEKVAQNSLTPLKICRQ 1312
Query: 62 GPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLR 121
P IS+LLFADD LLF +A ++A V L + Q +GQ IN K + F + + +
Sbjct: 1313 APGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLINPAKCSILFGEASPSSVS 1372
Query: 122 EDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRITL 181
EDI + + N YLG GR +G+F + KI ++ W + L+ G+ L
Sbjct: 1373 EDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQAKIAKRVIQWGENFLSSGGKEIL 1432
Query: 182 AKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADGG 241
K+VI IP Y M K P ++ DE+ K+ R F WG + R+ H +WD K +GG
Sbjct: 1433 IKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWWGADNGRRRTHWRAWDSLTKAKINGG 1492
Query: 242 LGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKY---GRNNDLIASINAHPYDSPLW 298
LGFR N+A L + W LI+ P L +VL++KY G D S NA SP W
Sbjct: 1493 LGFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKAKYFPHGSLTDTTFSANA----SPTW 1548
Query: 299 KALVNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSPS 358
+ + K ++W IG+G + W D W+P + S + ++ + V D+++
Sbjct: 1549 HGIEYGLDLLKKGIIWRIGNGNSVRIWRDPWIPRDLSRRPVSSKANCRLKW-VSDLIAED 1607
Query: 359 GDWN---IDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQHQD 415
G W+ I+ + + + +I + + D I W T F+V+SAY L Q
Sbjct: 1608 GTWDSAKINQYFLKIDADIIQKICISARLEE----DFIAWHPDKTGRFSVRSAYKLALQL 1663
Query: 416 CPI----------LEGDWKSIWKWHGPHRIQTFIW 440
+ L W+ IWK + P +++ F W
Sbjct: 1664 ADMNNCSSSSSSRLNKSWELIWKCNVPQKVRIFAW 1698
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 234 bits (597), Expect = 8e-60
Identities = 137/459 (29%), Positives = 226/459 (48%), Gaps = 15/459 (3%)
Query: 1 NIEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGR 60
++ Y ++ NG+ TRGIRQGDPLSP LFV+C + L H++ +A ++
Sbjct: 590 SVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQD 649
Query: 61 YGPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQL 120
++HLLFADD LL +A+ ++ ++ CL + Q SGQ IN NK+ + F KNVD Q+
Sbjct: 650 KKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQI 709
Query: 121 REDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRIT 180
++ I +G + G YLG S R F I K+QS+L GW + L+ G+
Sbjct: 710 KDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEV 769
Query: 181 LAKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADG 240
L KS+ +P Y M K+PK +C ++ + F W Q RK H +SW LPK G
Sbjct: 770 LLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQG 829
Query: 241 GLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYDSPLWKA 300
G GF+ N+A L K W +++ L+ RV +S+Y N+D +++ S W++
Sbjct: 830 GFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRG-SRPSYAWRS 888
Query: 301 LVNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSP-SG 359
++ + IG+G+ T W DKW+ + + + + ++++ L V ++ P S
Sbjct: 889 ILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSR 948
Query: 360 DWNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQHQDC--- 416
+WN++ L + P V IL + D+ W ++ ++V++ Y +
Sbjct: 949 NWNLNMLRDLFPWKDVEIILKQRPLFFKE--DSFCWLHSHNGLYSVKTGYEFLSKQVHHR 1006
Query: 417 --------PILEGDWKSIWKWHGPHRIQTFIWLDTHERI 447
P + + IW H +I+ F+W H I
Sbjct: 1007 LYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAI 1045
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 234 bits (597), Expect = 8e-60
Identities = 137/459 (29%), Positives = 226/459 (48%), Gaps = 15/459 (3%)
Query: 1 NIEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGR 60
++ Y ++ NG+ TRGIRQGDPLSP LFV+C + L H++ +A ++
Sbjct: 611 SVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQD 670
Query: 61 YGPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQL 120
++HLLFADD LL +A+ ++ ++ CL + Q SGQ IN NK+ + F KNVD Q+
Sbjct: 671 KKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQI 730
Query: 121 REDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRIT 180
++ I +G + G YLG S R F I K+QS+L GW + L+ G+
Sbjct: 731 KDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEV 790
Query: 181 LAKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADG 240
L KS+ +P Y M K+PK +C ++ + F W Q RK H +SW LPK G
Sbjct: 791 LLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQG 850
Query: 241 GLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYDSPLWKA 300
G GF+ N+A L K W +++ L+ RV +S+Y N+D +++ S W++
Sbjct: 851 GFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRG-SRPSYAWRS 909
Query: 301 LVNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSP-SG 359
++ + IG+G+ T W DKW+ + + + + ++++ L V ++ P S
Sbjct: 910 ILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSR 969
Query: 360 DWNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQHQDC--- 416
+WN++ L + P V IL + D+ W ++ ++V++ Y +
Sbjct: 970 NWNLNMLRDLFPWKDVEIILKQRPLFFKE--DSFCWLHSHNGLYSVKTGYEFLSKQVHHR 1027
Query: 417 --------PILEGDWKSIWKWHGPHRIQTFIWLDTHERI 447
P + + IW H +I+ F+W H I
Sbjct: 1028 LYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAI 1066
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 232 bits (592), Expect = 3e-59
Identities = 141/458 (30%), Positives = 221/458 (47%), Gaps = 15/458 (3%)
Query: 4 YIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRYGP 63
Y I+ NG+ RGIRQGDP+SPYL+++C + LS +I ++AK +A R GP
Sbjct: 70 YSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLHGFKASRNGP 129
Query: 64 QISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLRED 123
ISHLLFA D L+F +A++E+ +++ L ++ +ASGQ +N K+ + F K +D + E
Sbjct: 130 AISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGKGLDFRTSEQ 189
Query: 124 ILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRITLAK 183
+ G + G YLG GR+ F+ I + K++ W + L+ AG+ L K
Sbjct: 190 LSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLSPAGKEVLIK 249
Query: 184 SVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADGGLG 243
S+++ IP Y M +P + +I R F W ++ K ++W PK GGL
Sbjct: 250 SIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAWSKLNDPKKMGGLA 309
Query: 244 FRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYDSPLWKALVN 303
R N A L K W +++ P L RV ++KY L+ A S WK++++
Sbjct: 310 IRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLL-DAKATSQSSYAWKSILH 368
Query: 304 IWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSPSGDWNI 363
+ + G+G N W D W+P N +G + L V D+L G WN
Sbjct: 369 GTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQLKVSDLLI-EGRWNE 427
Query: 364 DFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSL-------QHQDC 416
D L + N + I A+ P+ D I W T+ +++V+S Y L QH
Sbjct: 428 DLLCKLIHQNDIPHIRAIR-PSITGANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHASL 486
Query: 417 P-----ILEGDWKSIWKWHGPHRIQTFIWLDTHERILT 449
P + + +IWK + P +I+ F W H + T
Sbjct: 487 PSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPT 524
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 232 bits (591), Expect = 4e-59
Identities = 136/446 (30%), Positives = 223/446 (49%), Gaps = 18/446 (4%)
Query: 2 IEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRY 61
+ Y + NG +TF +RG+RQGDPLSP+LF+ D LS ++ ++V+ P+ R+
Sbjct: 1184 VRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEKVDQGAMNPIHICRH 1243
Query: 62 GPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLR 121
P + HLLFADD LF +A+ +QA + L+ + +GQ IN +K + F ++ T ++
Sbjct: 1244 APAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLINPSKCSIMFGQSSPTAVQ 1303
Query: 122 EDILHHTGFNQVNSL-GMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRIT 180
I + NS YLG GR +GKF + ++ ++ W ++ L+ G+
Sbjct: 1304 NQIKQTLQIS--NSFEDKYLGFPTPEGRMTKGKFQSLQERLWKRIMLWGEKFLSTGGKEI 1361
Query: 181 LAKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADG 240
L K+V+ +P Y M K+P+++C+E+ K+ R F WG R+ H SWD K G
Sbjct: 1362 LIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWWGAEKGMRRTHWKSWDCLIAQKLKG 1421
Query: 241 GLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLI-ASINAHPYDSPLWK 299
G+GFR N+A L + W L+ P+ L R+L++ Y N LI S + SP W+
Sbjct: 1422 GMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAIYYPNGSLIDTSFGGNA--SPGWR 1479
Query: 300 ALVNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSPSG 359
A+ K ++W IG+G++ W D W+P + S I + + V D++ SG
Sbjct: 1480 AIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPISAKRNCRLRW-VSDLIDQSG 1538
Query: 360 DWNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQHQDCPIL 419
W+ D + + IL + + + + D I W F+V+SAY L +
Sbjct: 1539 SWDTDKISQHFLPMDAEAILNIRLSSRLE-DDFIAWHPDKLGRFSVRSAYHLAVALAHVD 1597
Query: 420 EGD----------WKSIWKWHGPHRI 435
EG W ++WK + P ++
Sbjct: 1598 EGSSSSGNGNSRAWNALWKCNAPQKL 1623
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 231 bits (590), Expect = 5e-59
Identities = 139/450 (30%), Positives = 215/450 (46%), Gaps = 13/450 (2%)
Query: 1 NIEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGR 60
++ Y++ +NG +F TRG+RQGDPL P+LF+ D LS ++ ++V P + R
Sbjct: 1346 SVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVADGLSLLLKEKVAQNSLTPFKVCR 1405
Query: 61 YGPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQL 120
P ISHLLFADD LLF +A +A V L + +GQ IN K + +
Sbjct: 1406 AAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAV 1465
Query: 121 REDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRIT 180
E I + YLG GR +G+F + KI ++ W + L+ G+
Sbjct: 1466 SEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEV 1525
Query: 181 LAKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADG 240
L K+VI IP Y M K+P+++ D++ K+ + F W + RK H +WD PK+ G
Sbjct: 1526 LIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLG 1585
Query: 241 GLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYDSPLWKA 300
GLGFR N+A L + W LI P+ L RVL++KY + LI + SP W++
Sbjct: 1586 GLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLI-DTSFGSNSSPAWRS 1644
Query: 301 LVNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSPSGD 360
+ + K ++W +G+G + W D W+P + S I + + V D+++ G
Sbjct: 1645 IEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPITGKANCRLKW-VSDLITEDGS 1703
Query: 361 WNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQHQDCPILE 420
W++ + IL + I + + D I W F+V+SAY L Q I E
Sbjct: 1704 WDVPKIHQYFHNLDAEVILNICISSRSE-EDFIAWHPDKNGMFSVRSAYRLAAQLVNIEE 1762
Query: 421 GD----------WKSIWKWHGPHRIQTFIW 440
W+ IWK P +++ F W
Sbjct: 1763 SSSSGTNNINKAWEMIWKCKVPQKVKIFAW 1792
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 230 bits (587), Expect = 1e-58
Identities = 129/421 (30%), Positives = 218/421 (51%), Gaps = 3/421 (0%)
Query: 2 IEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRY 61
++Y ++ NG+ RG+RQGDPLSPYLF++C + L I + K ++
Sbjct: 463 VQYRVLLNGQPRGLIVPKRGLRQGDPLSPYLFILCTEVLIANIRKAEQEKLITGIKVATA 522
Query: 62 GPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLR 121
P +SHLLFA+D L F +A+ EQ +L L + SGQ IN +K+ + F V ++
Sbjct: 523 SPSVSHLLFANDSLFFCKANKEQCGVILGILKQYEAVSGQMINFSKSSIQFGHKVGDDIK 582
Query: 122 EDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRITL 181
+I G + + +G YLG + G S F+ + +++Q+++NGW + L+ G+ +
Sbjct: 583 AEIKSALGIHSIGGMGSYLGLPESLGGSKTRIFSFVRDRLQTRINGWSAKFLSKGGKEVM 642
Query: 182 AKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADGG 241
KSV++ +P Y M ++PKTI ++ F W + R H ++W+ C KADGG
Sbjct: 643 IKSVVAVLPTYVMSCFRLPKTITSKLTSAVAKFWWSSDGESRGMHWMAWNKLCSSKADGG 702
Query: 242 LGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYDSPLWKAL 301
LGFR + N A L K LW LI P+ L+ +V + +Y R ++ + + ++ S W+++
Sbjct: 703 LGFRSVNDFNSALLAKQLWRLITVPDSLFAKVFKGRYFRKSNPLDKLKSYS-PSYGWRSI 761
Query: 302 VNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVL-SPSGD 360
++ + K ++ +G G + + W D W+P +I N + +D +L V +++ S S
Sbjct: 762 ISARSLVKKGLINRVGSGASISVWEDPWIPAQFPRPAISNGSVIDPSLKVNNLIDSRSNF 821
Query: 361 WNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQHQDCPILE 420
WNIDFL V I A+ + D++ H + VQ L+H +L
Sbjct: 822 WNIDFLNEIFVPEDVLLISAMHL-GSSTKEDSLDIKTLKAHIWKVQCPPKLRHFLWQVLS 880
Query: 421 G 421
G
Sbjct: 881 G 881
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 230 bits (586), Expect = 1e-58
Identities = 144/470 (30%), Positives = 229/470 (48%), Gaps = 22/470 (4%)
Query: 1 NIEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGR 60
++ Y + NGE T +RGIRQGDP+SPYLF++C + LS ++ + A ++ GR
Sbjct: 627 SVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGR 686
Query: 61 YGPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQL 120
+GP ISHLLFADD + FA+A + + L +C ASGQKIN +K+ ++F K +
Sbjct: 687 HGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAV 746
Query: 121 REDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRIT 180
+ + + YLG G + F + +I ++NGW + L+ AG T
Sbjct: 747 KISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMET 806
Query: 181 LAKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADG 240
+ K+V IP Y M +IP +IC+++ WG D +K H SW PK G
Sbjct: 807 MLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLG 866
Query: 241 GLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYD-SPLWK 299
G+GFR+ N+A L + W L+ +P+ L RVL+ +Y N+ + A P S W+
Sbjct: 867 GMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEA--AQPKSPSFTWR 924
Query: 300 ALVNIWNDFKGHVVWNIGDGRNTNFWLDKWVPN-NESLMSIGNQTYMDITLSVRDVLSPS 358
+L+ V W +GDG+ + D W+P L++ + D T+S + +
Sbjct: 925 SLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDATVSCL-MNEDA 983
Query: 359 GDWNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQHQDC-- 416
W+ D + + P + +IL + I D D W ++V+SAY+L +
Sbjct: 984 RCWDGDLIRSLFPVDIAKEILQIPISRHGDA-DFASWPHDKLGLYSVRSAYNLARSEAFF 1042
Query: 417 ------------PILEG--DWKSIWKWHGPHRIQTFIWLDTHERILTNFQ 452
+LE DWK +WK + P +++ +W HE + T FQ
Sbjct: 1043 ADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQ 1092
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 229 bits (585), Expect = 2e-58
Identities = 139/450 (30%), Positives = 215/450 (46%), Gaps = 13/450 (2%)
Query: 1 NIEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGR 60
++ Y++ +NG +F TRG+RQGDPLSP+LF+ D LS ++ ++V P + R
Sbjct: 22 SVRYMVKFNGTLLQSFAPTRGLRQGDPLSPFLFLFVADGLSLLLKEKVAQNSLTPFKVCR 81
Query: 61 YGPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQL 120
P ISHLLFADD LLF +A +A V L + +GQ IN K + +
Sbjct: 82 AAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAV 141
Query: 121 REDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRIT 180
E I + YL GR +G+F + KI ++ W + L+ G+
Sbjct: 142 SEAISEILQVERDRFEDRYLEFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEV 201
Query: 181 LAKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADG 240
L K+VI IP Y M K+P+++ D++ K+ + F W + RK H +WD PK+ G
Sbjct: 202 LIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLG 261
Query: 241 GLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYDSPLWKA 300
GLGFR N+A L + W LI P+ L RVL++KY + LI + SP W++
Sbjct: 262 GLGFRDYWLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLI-DTSFGSNSSPAWRS 320
Query: 301 LVNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSPSGD 360
+ + K ++W +G+G + W D W+P + S I + + V D+++ G
Sbjct: 321 IEYGLDLLKKGIIWRVGNGNSIRIWRDPWLPRDHSRRPITGKANCRLKW-VSDLITEDGS 379
Query: 361 WNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQHQDCPILE 420
W++ + IL + I + + D I W F+V+SAY L Q I E
Sbjct: 380 WDVPKIHQYFHNLDAEVILNICISSRSE-EDFIAWHPDKNGMFSVRSAYRLAAQLVNIEE 438
Query: 421 GD----------WKSIWKWHGPHRIQTFIW 440
W+ IWK P +++ F W
Sbjct: 439 SSSSGTNNINKAWEMIWKCKVPQKVKIFAW 468
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 227 bits (579), Expect = 1e-57
Identities = 140/460 (30%), Positives = 227/460 (48%), Gaps = 23/460 (5%)
Query: 1 NIEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGR 60
++ Y ++ NG +RG+RQGDPLSPYLFVIC + L M+ + ++ R
Sbjct: 612 SVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGLKVAR 671
Query: 61 YGPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQL 120
P ISHLLFADD + + + + E ++ ++ + ASGQ++N K+ +YF K++ +
Sbjct: 672 GAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISEER 731
Query: 121 REDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRIT 180
R + G + G+YLG + S +++ +++ K+ GW+ L+ G+
Sbjct: 732 RCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEI 791
Query: 181 LAKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADG 240
L K+V +P Y M KIPKTIC +I+ + F W + +GR H +W PKA G
Sbjct: 792 LLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVG 851
Query: 241 GLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKY-GRNNDLIASINAHPYDSPLWK 299
GLGF++ N A L K LW +I + L +V +S+Y +++ L A + + P S WK
Sbjct: 852 GLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRP--SFAWK 909
Query: 300 ALVNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMS-------IGNQTYMDITLSVR 352
++ K + IG+G N W D W+ + + + +Q + V+
Sbjct: 910 SIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVK 969
Query: 353 DVLSPSG-DWNIDFLINNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAY-- 409
D+L P G DWN + + P NT ILAL P + D W + + H++V+S Y
Sbjct: 970 DLLLPDGRDWNWNLVSLLFPDNTQENILALR-PGGKETRDRFTWEYSRSGHYSVKSGYWV 1028
Query: 410 ---------SLQHQDCPILEGDWKSIWKWHGPHRIQTFIW 440
+ Q P L+ ++ IWK P +I F+W
Sbjct: 1029 MTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLW 1068
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 218 bits (554), Expect = 8e-55
Identities = 129/446 (28%), Positives = 221/446 (48%), Gaps = 18/446 (4%)
Query: 2 IEYIIMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRY 61
+ Y + NG + +RG+RQGDPLSPYLF++C + LS + E + +R R
Sbjct: 554 VSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARG 613
Query: 62 GPQISHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLR 121
PQ++HLLFADD + F + + + + L + ASGQ IN K+ + FS ++
Sbjct: 614 SPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIK 673
Query: 122 EDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRITL 181
+ + +G YLG GR R F+ IV++I+ + + W + L+ AG+ L
Sbjct: 674 RRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQIL 733
Query: 182 AKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADGG 241
K+V+S++P Y M K+P ++C +I + F W RK +SWD LP +GG
Sbjct: 734 LKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGG 793
Query: 242 LGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYDSPLWKAL 301
LGFR+ K+ W ++K P L RVL KY + + + + S W+ +
Sbjct: 794 LGFREIE-------AKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGI 846
Query: 302 VNIWNDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSPS-GD 360
+ + + + W+IG G + N W + W+ + IG T + LSV D++
Sbjct: 847 LAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHDVKS 906
Query: 361 WNIDFLINNLP--TNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSAYSLQHQD--- 415
WN++ + +LP + + +I ++P D++ W + +T ++ Y+L +
Sbjct: 907 WNVEAIRKHLPQYEDQIRKITINALPLQ----DSLVWLPVKSGEYTTKTGYALAKLNSFP 962
Query: 416 CPILEGDW-KSIWKWHGPHRIQTFIW 440
L+ +W K+IWK H +++ F+W
Sbjct: 963 ASQLDFNWQKNIWKIHTSPKVKHFLW 988
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.338 0.149 0.503
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,249,181,638
Number of Sequences: 2540612
Number of extensions: 52493391
Number of successful extensions: 156448
Number of sequences better than 10.0: 764
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 154540
Number of HSP's gapped (non-prelim): 1071
length of query: 755
length of database: 863,360,394
effective HSP length: 136
effective length of query: 619
effective length of database: 517,837,162
effective search space: 320541203278
effective search space used: 320541203278
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 79 (35.0 bits)
Medicago: description of AC146757.4