BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146756.7 - phase: 0
(96 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB39975.1| PRCI [Nicotiana tabacum] gi|12229948|sp|Q9XG77|P... 166 1e-40
gb|AAN28768.1| At2g05840/T6P5.4 [Arabidopsis thaliana] gi|400681... 162 2e-39
gb|AAC28135.1| proteasome IOTA subunit [Glycine max] gi|7435869|... 161 3e-39
dbj|BAB09993.1| multicatalytic endopeptidase complex alpha subun... 159 2e-38
gb|AAC32054.1| 20S proteasome subunit PAA1 [Arabidopsis thaliana] 159 2e-38
emb|CAC19494.1| maize 20S proteasome alpha subunit [Zea mays] 158 3e-38
ref|XP_470540.1| Putative alpha 1 subunit of 20S proteasome [Ory... 157 5e-38
gb|AAM47883.1| multicatalytic endopeptidase complex alpha subuni... 157 6e-38
emb|CAA74025.1| multicatalytic endopeptidase complex, proteasome... 157 8e-38
ref|XP_421242.1| PREDICTED: similar to Proteasome subunit alpha ... 127 9e-29
ref|NP_058979.1| proteasome (prosome, macropain) subunit, alpha ... 125 3e-28
ref|NP_036098.1| proteasome (prosome, macropain) subunit, alpha ... 125 3e-28
ref|XP_537412.1| PREDICTED: similar to Proteasome subunit alpha ... 125 3e-28
gb|AAH84423.1| LOC495277 protein [Xenopus laevis] 124 6e-28
ref|NP_001002589.1| hypothetical protein LOC436862 [Danio rerio]... 124 8e-28
gb|AAH77442.1| Psma6-prov protein [Xenopus laevis] gi|51968290|d... 124 8e-28
gb|AAH61438.1| Proteasome (prosome, macropain) subunit, alpha ty... 124 8e-28
emb|CAG00121.1| unnamed protein product [Tetraodon nigroviridis] 122 2e-27
gb|AAH55520.1| Unknown (protein for MGC:66161) [Danio rerio] 122 2e-27
gb|AAK40122.1| proteasome subunit alpha Type 6-A [Danio rerio] g... 122 2e-27
>emb|CAB39975.1| PRCI [Nicotiana tabacum] gi|12229948|sp|Q9XG77|PSA6_TOBAC
Proteasome subunit alpha type 6 (20S proteasome alpha
subunit A) (20S proteasome subunit alpha-1)
Length = 246
Score = 166 bits (420), Expect = 1e-40
Identities = 82/84 (97%), Positives = 83/84 (98%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRG DSVCVVTQKKVPDKL
Sbjct: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMT 84
LDQTSV+HLFPITKYLGLLATGMT
Sbjct: 61 LDQTSVSHLFPITKYLGLLATGMT 84
>gb|AAN28768.1| At2g05840/T6P5.4 [Arabidopsis thaliana] gi|4006819|gb|AAC95161.1|
20S proteasome alpha subunit A2 (PAA2) [Arabidopsis
thaliana] gi|15450623|gb|AAK96583.1| At2g05840/T6P5.4
[Arabidopsis thaliana] gi|3421072|gb|AAC32055.1| 20S
proteasome subunit PAA2 [Arabidopsis thaliana]
gi|15224993|ref|NP_178641.1| 20S proteasome alpha
subunit A2 (PAA2) [Arabidopsis thaliana]
gi|25290061|pir||T51967 proteasome endopeptidase
complex (EC 3.4.25.1) chain PAA2 [imported] -
Arabidopsis thaliana gi|12229902|sp|O81147|PS62_ARATH
Proteasome subunit alpha type 6-2 (20S proteasome alpha
subunit A2)
Length = 246
Score = 162 bits (410), Expect = 2e-39
Identities = 80/87 (91%), Positives = 83/87 (94%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGSG GYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRG DSVCVVTQKKVPDKL
Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMTGVS 87
LDQ+SV+HLFP+TKYLGLLATGMT S
Sbjct: 61 LDQSSVSHLFPVTKYLGLLATGMTADS 87
>gb|AAC28135.1| proteasome IOTA subunit [Glycine max] gi|7435869|pir||T06142
proteasome endopeptidase complex (EC 3.4.25.1) iota
chain - soybean gi|12229897|sp|O48551|PSA6_SOYBN
Proteasome subunit alpha type 6 (20S proteasome alpha
subunit A) (20S proteasome subunit alpha-1) (Proteasome
iota subunit)
Length = 246
Score = 161 bits (408), Expect = 3e-39
Identities = 79/84 (94%), Positives = 81/84 (96%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGSGGGY+RHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRG DS+CVVT KKVPDKL
Sbjct: 1 MSRGSGGGYNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMT 84
LD TSVTHLFPITKYLGLLATGMT
Sbjct: 61 LDNTSVTHLFPITKYLGLLATGMT 84
>dbj|BAB09993.1| multicatalytic endopeptidase complex alpha subunit-like
[Arabidopsis thaliana] gi|15238554|ref|NP_198409.1| 20S
proteasome alpha subunit A1 (PAA1) (PRC1) [Arabidopsis
thaliana] gi|12643647|sp|O81146|PS61_ARATH Proteasome
subunit alpha type 6-1 (20S proteasome alpha subunit
A1)
Length = 246
Score = 159 bits (401), Expect = 2e-38
Identities = 77/84 (91%), Positives = 81/84 (95%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGSG GYDRHITIFSPEGRLFQVEYAFKAVK AGITSIGVRG DSVCVVTQKKVPDKL
Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMT 84
LDQ+SVTHLFPITKY+GL+ATG+T
Sbjct: 61 LDQSSVTHLFPITKYIGLVATGIT 84
>gb|AAC32054.1| 20S proteasome subunit PAA1 [Arabidopsis thaliana]
Length = 246
Score = 159 bits (401), Expect = 2e-38
Identities = 77/84 (91%), Positives = 81/84 (95%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGSG GYDRHITIFSPEGRLFQVEYAFKAVK AGITSIGVRG DSVCVVTQKKVPDKL
Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMT 84
LDQ+SVTHLFPITKY+GL+ATG+T
Sbjct: 61 LDQSSVTHLFPITKYIGLVATGIT 84
>emb|CAC19494.1| maize 20S proteasome alpha subunit [Zea mays]
Length = 246
Score = 158 bits (400), Expect = 3e-38
Identities = 76/84 (90%), Positives = 82/84 (97%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRG+G GYDRHITIFSPEGRL+QVEYAFKAVK+AG+TSIGVRG DSVCVVTQKKVPDKL
Sbjct: 1 MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGADSVCVVTQKKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMT 84
LDQTSVTHLFPITKY+GLLATG+T
Sbjct: 61 LDQTSVTHLFPITKYVGLLATGLT 84
>ref|XP_470540.1| Putative alpha 1 subunit of 20S proteasome [Oryza sativa
(japonica cultivar-group)] gi|27436760|gb|AAO13479.1|
Putative alpha 1 subunit of 20S proteasome [Oryza
sativa (japonica cultivar-group)]
gi|24960741|gb|AAN65435.1| Putative alpha 1 subunit of
20S proteasome [Oryza sativa (japonica cultivar-group)]
gi|8671492|dbj|BAA96829.1| alpha 1 subunit of 20S
proteasome [Oryza sativa (japonica cultivar-group)]
gi|12229922|sp|Q9LSU3|PSA6_ORYSA Proteasome subunit
alpha type 6 (20S proteasome alpha subunit A) (20S
proteasome subunit alpha-1)
Length = 246
Score = 157 bits (398), Expect = 5e-38
Identities = 75/84 (89%), Positives = 81/84 (96%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRG+G GYDRHITIFSPEGRL+QVEYAFKAVK+AG+TSIGVRG DSVCVVTQKKVPDKL
Sbjct: 1 MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMT 84
LD TSVTHLFPITKY+GLLATG+T
Sbjct: 61 LDHTSVTHLFPITKYIGLLATGLT 84
>gb|AAM47883.1| multicatalytic endopeptidase complex alpha subunit-like
[Arabidopsis thaliana] gi|20260140|gb|AAM12968.1|
multicatalytic endopeptidase complex alpha subunit-like
[Arabidopsis thaliana]
Length = 246
Score = 157 bits (397), Expect = 6e-38
Identities = 76/84 (90%), Positives = 81/84 (95%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGSG GYDRHITIFSPEGRLFQVEYAFKAVK AGITSIGVRG DSVCVVTQK+VPDKL
Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKEVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMT 84
LDQ+SVTHLFPITKY+GL+ATG+T
Sbjct: 61 LDQSSVTHLFPITKYIGLVATGIT 84
>emb|CAA74025.1| multicatalytic endopeptidase complex, proteasome component, alpha
subunit [Arabidopsis thaliana]
Length = 245
Score = 157 bits (396), Expect = 8e-38
Identities = 76/83 (91%), Positives = 80/83 (95%)
Query: 2 SRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKLL 61
SRGSG GYDRHITIFSPEGRLFQVEYAFKAVK AGITSIGVRG DSVCVVTQKKVPDKLL
Sbjct: 1 SRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLL 60
Query: 62 DQTSVTHLFPITKYLGLLATGMT 84
DQ+SVTHLFPITKY+GL+ATG+T
Sbjct: 61 DQSSVTHLFPITKYIGLVATGIT 83
>ref|XP_421242.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) [Gallus gallus]
Length = 246
Score = 127 bits (318), Expect = 9e-29
Identities = 60/87 (68%), Positives = 70/87 (79%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRG DS +VTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDSAVIVTQKKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMTGVS 87
LD +VTHLF IT+ +G + TGMT S
Sbjct: 61 LDSNTVTHLFSITENIGCVMTGMTADS 87
>ref|NP_058979.1| proteasome (prosome, macropain) subunit, alpha type 6 [Rattus
norvegicus] gi|35682|emb|CAA42052.1| prosomal P27K
protein [Homo sapiens] gi|55640605|ref|XP_509906.1|
PREDICTED: similar to Proteasome subunit alpha type 6
(Proteasome iota chain) (Macropain iota chain)
(Multicatalytic endopeptidase complex iota chain) [Pan
troglodytes] gi|48146005|emb|CAG33225.1| PSMA6 [Homo
sapiens] gi|67969980|dbj|BAE01337.1| unnamed protein
product [Macaca fascicularis]
gi|47125332|gb|AAH70137.1| Proteasome alpha 6 subunit
[Homo sapiens] gi|38328367|gb|AAH62232.1| Proteasome
(prosome, macropain) subunit, alpha type 6 [Rattus
norvegicus] gi|23273861|gb|AAH23659.1| Proteasome alpha
6 subunit [Homo sapiens] gi|12804241|gb|AAH02979.1|
Proteasome alpha 6 subunit [Homo sapiens]
gi|18490853|gb|AAH22354.1| Proteasome alpha 6 subunit
[Homo sapiens] gi|17389730|gb|AAH17882.1| Proteasome
alpha 6 subunit [Homo sapiens]
gi|46397655|sp|P60901|PSA6_RAT Proteasome subunit alpha
type 6 (Proteasome iota chain) (Macropain iota chain)
(Multicatalytic endopeptidase complex iota chain)
gi|46397659|sp|P60900|PSA6_HUMAN Proteasome subunit
alpha type 6 (Proteasome iota chain) (Macropain iota
chain) (Multicatalytic endopeptidase complex iota
chain) (27 kDa prosomal protein) (PROS-27) (p27K)
gi|21465656|pdb|1IRU|O Chain O, Crystal Structure Of
The Mammalian 20s Proteasome At 2.75 A Resolution
gi|21465642|pdb|1IRU|A Chain A, Crystal Structure Of
The Mammalian 20s Proteasome At 2.75 A Resolution
gi|286250|dbj|BAA01587.1| proteasome subunit R-IOTA
[Rattus sp.] gi|446773|prf||1912298A prosomal
RNA-binding protein p27K gi|23110944|ref|NP_002782.1|
proteasome alpha 6 subunit [Homo sapiens]
Length = 246
Score = 125 bits (314), Expect = 3e-28
Identities = 59/87 (67%), Positives = 70/87 (79%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRG D +VTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMTGVS 87
LD ++VTHLF IT+ +G + TGMT S
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADS 87
>ref|NP_036098.1| proteasome (prosome, macropain) subunit, alpha type 6 [Mus
musculus] gi|6649571|gb|AAF21459.1| proteasome subunit
iota gi|5757651|gb|AAD50532.1| proteasome subunit iota
[Mus musculus] gi|9910829|sp|Q9QUM9|PSA6_MOUSE
Proteasome subunit alpha type 6 (Proteasome iota chain)
(Macropain iota chain) (Multicatalytic endopeptidase
complex iota chain) gi|26353078|dbj|BAC40169.1| unnamed
protein product [Mus musculus]
Length = 246
Score = 125 bits (314), Expect = 3e-28
Identities = 59/87 (67%), Positives = 70/87 (79%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRG D +VTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMTGVS 87
LD ++VTHLF IT+ +G + TGMT S
Sbjct: 61 LDSSTVTHLFKITESIGCVMTGMTADS 87
>ref|XP_537412.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) [Canis familiaris]
Length = 228
Score = 125 bits (314), Expect = 3e-28
Identities = 59/87 (67%), Positives = 70/87 (79%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRG D +VTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMTGVS 87
LD ++VTHLF IT+ +G + TGMT S
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADS 87
>gb|AAH84423.1| LOC495277 protein [Xenopus laevis]
Length = 246
Score = 124 bits (311), Expect = 6e-28
Identities = 59/87 (67%), Positives = 69/87 (78%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRG D VVTQ+KVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVVVTQRKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMTGVS 87
LD +VTHLF IT+ +G + TGMT S
Sbjct: 61 LDSNTVTHLFKITENIGCVMTGMTADS 87
>ref|NP_001002589.1| hypothetical protein LOC436862 [Danio rerio]
gi|49902952|gb|AAH76196.1| Zgc:92716 [Danio rerio]
Length = 246
Score = 124 bits (310), Expect = 8e-28
Identities = 59/87 (67%), Positives = 70/87 (79%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRG D VVTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAIVVTQKKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMTGVS 87
LD ++VTHLF IT+ +G + +GMT S
Sbjct: 61 LDSSTVTHLFRITENIGCVMSGMTADS 87
>gb|AAH77442.1| Psma6-prov protein [Xenopus laevis] gi|51968290|dbj|BAD42870.1|
20S proteasome alpha1 subunit [Xenopus laevis]
Length = 246
Score = 124 bits (310), Expect = 8e-28
Identities = 59/87 (67%), Positives = 69/87 (78%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRG D VVTQ+KVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVVVTQRKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMTGVS 87
LD +VTHLF IT+ +G + TGMT S
Sbjct: 61 LDSNTVTHLFRITENIGCVMTGMTADS 87
>gb|AAH61438.1| Proteasome (prosome, macropain) subunit, alpha type 6 [Xenopus
tropicalis] gi|45360875|ref|NP_989113.1| proteasome
(prosome, macropain) subunit, alpha type 6 [Xenopus
tropicalis]
Length = 246
Score = 124 bits (310), Expect = 8e-28
Identities = 59/87 (67%), Positives = 69/87 (78%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRG D VVTQ+KVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVVVTQRKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMTGVS 87
LD +VTHLF IT+ +G + TGMT S
Sbjct: 61 LDSNTVTHLFRITESIGCVMTGMTADS 87
>emb|CAG00121.1| unnamed protein product [Tetraodon nigroviridis]
Length = 246
Score = 122 bits (307), Expect = 2e-27
Identities = 59/87 (67%), Positives = 69/87 (78%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRG D VVTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVVVTQKKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMTGVS 87
LD ++VTHLF IT +G + +GMT S
Sbjct: 61 LDASTVTHLFRITDNIGCVMSGMTADS 87
>gb|AAH55520.1| Unknown (protein for MGC:66161) [Danio rerio]
Length = 246
Score = 122 bits (306), Expect = 2e-27
Identities = 57/87 (65%), Positives = 70/87 (79%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRG D V+TQ+KVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVVITQRKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMTGVS 87
LD ++VTHLF IT+ +G + +GMT S
Sbjct: 61 LDSSTVTHLFRITENIGCVMSGMTADS 87
>gb|AAK40122.1| proteasome subunit alpha Type 6-A [Danio rerio]
gi|24119230|ref|NP_705941.1| proteasome (prosome,
macropain) subunit, alpha type, 6a [Danio rerio]
Length = 233
Score = 122 bits (306), Expect = 2e-27
Identities = 57/87 (65%), Positives = 70/87 (79%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRG D V+TQ+KVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVVITQRKVPDKL 60
Query: 61 LDQTSVTHLFPITKYLGLLATGMTGVS 87
LD ++VTHLF IT+ +G + +GMT S
Sbjct: 61 LDSSTVTHLFRITENIGCVMSGMTADS 87
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.139 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,583,095
Number of Sequences: 2540612
Number of extensions: 5492439
Number of successful extensions: 11291
Number of sequences better than 10.0: 562
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 10491
Number of HSP's gapped (non-prelim): 564
length of query: 96
length of database: 863,360,394
effective HSP length: 72
effective length of query: 24
effective length of database: 680,436,330
effective search space: 16330471920
effective search space used: 16330471920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146756.7