BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146751.11 - phase: 0
(399 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176261.1| DNA-directed RNA polymerase, putative [Arabidop... 475 e-133
ref|NP_849833.1| DNA-directed RNA polymerase, putative [Arabidop... 431 e-119
gb|AAB00528.1| RNA polymerase subunit gi|1586549|prf||2204246A R... 429 e-119
gb|AAM64255.1| RNA polymerase subunit [Arabidopsis thaliana] 429 e-119
ref|NP_974057.1| DNA-directed RNA polymerase, putative [Arabidop... 310 4e-83
ref|XP_467544.1| putative RNA polymerase subunit [Oryza sativa (... 292 1e-77
ref|NP_001008331.1| RNA polymerase 1-1 (predicted) [Rattus norve... 266 6e-70
gb|AAH72033.1| MGC78824 protein [Xenopus laevis] 266 8e-70
emb|CAI42629.1| RP3-337H4.4 [Homo sapiens] gi|14250788|gb|AAH088... 266 1e-69
ref|XP_532147.1| PREDICTED: similar to DNA-directed RNA polymera... 265 1e-69
ref|NP_033111.1| RNA polymerase 1-1 [Mus musculus] gi|627869|pir... 265 2e-69
gb|AAH08118.1| POLR1C protein [Homo sapiens] 265 2e-69
sp|P52432|RPA5_MOUSE DNA-directed RNA polymerase I 40 kDa polype... 265 2e-69
ref|XP_640267.1| RNA polymerase I subunit [Dictyostelium discoid... 261 3e-68
gb|AAT68049.1| RNA polymerase I 140 kDa subunit [Danio rerio] 259 8e-68
gb|AAH56581.1| RNA polymerase 1-1 [Danio rerio] gi|41056007|ref|... 259 1e-67
ref|XP_419502.1| PREDICTED: similar to DNA-directed RNA polymera... 257 5e-67
ref|XP_594490.1| PREDICTED: similar to DNA-directed RNA polymera... 245 2e-63
emb|CAA71570.1| homologous to 40kD subunit of RNA-polymerase I a... 236 9e-61
emb|CAB38687.1| SPBC1289.07c [Schizosaccharomyces pombe] gi|1911... 236 1e-60
>ref|NP_176261.1| DNA-directed RNA polymerase, putative [Arabidopsis thaliana]
gi|14423464|gb|AAK62414.1| RNA polymerase subunit
(isoform B) [Arabidopsis thaliana]
gi|2462755|gb|AAB71974.1| RNA polymerase subunit
(isoform B) [Arabidopsis thaliana]
gi|514324|gb|AAB00529.1| RNA polymerase subunit
gi|25288353|pir||D96631 RNA polymerase subunit (isoform
B) [imported] - Arabidopsis thaliana
gi|24899667|gb|AAN65048.1| RNA polymerase subunit
(isoform B) [Arabidopsis thaliana]
gi|1586550|prf||2204246B RNA polymerase
Length = 385
Score = 475 bits (1223), Expect = e-133
Identities = 242/375 (64%), Positives = 295/375 (78%), Gaps = 15/375 (4%)
Query: 28 IMNLEDVPSTLPTHLELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFK 87
I +L DVP+ LP HLELQ+TRV C D+ H I +SGAY+++GVDNSVRL+NF ++FK
Sbjct: 23 IFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDFK 82
Query: 88 VEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRL 147
V+V +T+ +M FDMIG+ +ANAFRRIL+AE+P+MAIE+VY+ANNTS++QDEVL+HRL
Sbjct: 83 VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRL 142
Query: 148 GLIPIDADPKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSELI 207
GLIPI ADP+LFEY + + NEKNTIVFK HV+C KG PR V + LKWLPNGSELI
Sbjct: 143 GLIPIAADPRLFEYLSE-NDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSELI 201
Query: 208 AEGTKSAADPAPKTFTTFN--QKSLPKFSKDP-APYNLDVIVAKLGPGQEIELEAHAVKG 264
E S PKT+T+FN Q S P+F+++P P D+++AKLGPGQEIELEAHAVKG
Sbjct: 202 KESGGSTT--TPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKG 259
Query: 265 IGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVK 324
IGKTHAKWSPVATAWYRMLPEVVL K+ + + AEELV CP KVFDIED+G+GRK+A V
Sbjct: 260 IGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVA 319
Query: 325 NARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAV 384
R C+LCRECIR +G +W D+V LRRVK+HFIFTIESTG+ PP+VLF EAV
Sbjct: 320 RPRDCSLCRECIR---------DGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAV 370
Query: 385 KILEDKCERVITELS 399
KILEDKCERVI+ELS
Sbjct: 371 KILEDKCERVISELS 385
>ref|NP_849833.1| DNA-directed RNA polymerase, putative [Arabidopsis thaliana]
gi|15219820|ref|NP_176282.1| DNA-directed RNA
polymerase, putative [Arabidopsis thaliana]
gi|12323800|gb|AAG51868.1| RNA polymerase subunit;
10595-12672 [Arabidopsis thaliana]
gi|25288354|pir||H96633 RNA polymerase subunit,
10595-12672 [imported] - Arabidopsis thaliana
Length = 375
Score = 431 bits (1109), Expect = e-119
Identities = 225/371 (60%), Positives = 278/371 (74%), Gaps = 17/371 (4%)
Query: 28 IMNLEDVPSTLPTHLELQKTRVFCNLDAPQHTDTIQYSGAY-AALGVDNSVRLDNFYQNF 86
I +L DVP+ LP HL+ Q+TRV +AP HT + YSG Y ++ D++V+L NFY NF
Sbjct: 15 IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74
Query: 87 KVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHR 146
KV+V +T +MEFDMIGID A ANAFRRILIAEVP+MAIE+V IA NTS++ DEVL+HR
Sbjct: 75 KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134
Query: 147 LGLIPIDADPKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSEL 206
+GLIPI ADP+LFEY + + NEKNTIVFK HV+C K +PRL V + LKWLPNGSEL
Sbjct: 135 MGLIPIAADPRLFEYLSEHD-QANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSEL 193
Query: 207 IAEGTKSAADPAPKTFTTFN--QKSLPKFSKDP-APYNLDVIVAKLGPGQEIELEAHAVK 263
+ E + P KT+T+F+ Q SLP+F+ +P P +LD+++AKL PGQEIELEAHAVK
Sbjct: 194 LRESENKTSKP--KTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVK 251
Query: 264 GIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVV 323
GIGKTHAKWSPV TAWYRM PEVVL +V+DELAE LV+ CP VFDIED+G+G+K+A V
Sbjct: 252 GIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATV 311
Query: 324 KNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEA 383
R CTLC+EC+R+ D D V L VK+HFIF IESTG++PP+VLFTEA
Sbjct: 312 AQPRKCTLCKECVRDDD----------LVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEA 361
Query: 384 VKILEDKCERV 394
VKILE KCE +
Sbjct: 362 VKILEAKCEAI 372
>gb|AAB00528.1| RNA polymerase subunit gi|1586549|prf||2204246A RNA polymerase
Length = 375
Score = 429 bits (1104), Expect = e-119
Identities = 224/371 (60%), Positives = 277/371 (74%), Gaps = 17/371 (4%)
Query: 28 IMNLEDVPSTLPTHLELQKTRVFCNLDAPQHTDTIQYSGAY-AALGVDNSVRLDNFYQNF 86
I +L DVP+ LP HL+ Q+TRV +AP HT + YSG Y ++ D++V+L NFY NF
Sbjct: 15 IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74
Query: 87 KVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHR 146
KV+V +T +MEFDMIGID A ANAFRRILIAEVP+MAIE+V IA NTS++ DEVL+HR
Sbjct: 75 KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134
Query: 147 LGLIPIDADPKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSEL 206
+GLIPI ADP+LFEY + + NEKN IVFK HV+C K +PRL V + LKWLPNGSEL
Sbjct: 135 MGLIPIAADPRLFEYLSEHD-QANEKNNIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSEL 193
Query: 207 IAEGTKSAADPAPKTFTTFN--QKSLPKFSKDP-APYNLDVIVAKLGPGQEIELEAHAVK 263
+ E + P KT+T+F+ Q SLP+F+ +P P +LD+++AKL PGQEIELEAHAVK
Sbjct: 194 LRESENKTSKP--KTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVK 251
Query: 264 GIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVV 323
GIGKTHAKWSPV TAWYRM PEVVL +V+DELAE LV+ CP VFDIED+G+G+K+A V
Sbjct: 252 GIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATV 311
Query: 324 KNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEA 383
R CTLC+EC+R+ D D V L VK+HFIF IESTG++PP+VLFTEA
Sbjct: 312 AQPRKCTLCKECVRDDD----------LVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEA 361
Query: 384 VKILEDKCERV 394
VKILE KCE +
Sbjct: 362 VKILEAKCEAI 372
>gb|AAM64255.1| RNA polymerase subunit [Arabidopsis thaliana]
Length = 375
Score = 429 bits (1103), Expect = e-119
Identities = 224/371 (60%), Positives = 278/371 (74%), Gaps = 17/371 (4%)
Query: 28 IMNLEDVPSTLPTHLELQKTRVFCNLDAPQHTDTIQYSGAY-AALGVDNSVRLDNFYQNF 86
I +L DVP+ LP HL+ Q+TRV +AP HT + YSG Y ++ D++V+L NFY NF
Sbjct: 15 IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74
Query: 87 KVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHR 146
KV+V +T +MEFDMIGID A ANAFRRILIAEVP+MAIE+V+IA NTS++ DEVL+HR
Sbjct: 75 KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVFIAYNTSVIIDEVLAHR 134
Query: 147 LGLIPIDADPKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSEL 206
+GLIPI ADP+LFEY + + NEKNTIVFK HV+C K +PRL V + LKWLPNGSEL
Sbjct: 135 MGLIPIAADPRLFEYLSEHD-QANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSEL 193
Query: 207 IAEGTKSAADPAPKTFTTFN--QKSLPKFSKDP-APYNLDVIVAKLGPGQEIELEAHAVK 263
+ E + KT+T+F+ Q SLP+F+ +P P +LD+++AKL PGQEIELEAHAVK
Sbjct: 194 LRESENKTSKL--KTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVK 251
Query: 264 GIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVV 323
GIGKTHAKWSPV TAWYRM PEVVL +V+DELAE LV+ CP VFDIED+G+G+K+A V
Sbjct: 252 GIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATV 311
Query: 324 KNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEA 383
R CTLC+EC+R+ D D V L VK+HFIF IESTG++PP+VLFTEA
Sbjct: 312 AQPRKCTLCKECVRDDD----------LVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEA 361
Query: 384 VKILEDKCERV 394
VKILE KCE +
Sbjct: 362 VKILEAKCEAI 372
>ref|NP_974057.1| DNA-directed RNA polymerase, putative [Arabidopsis thaliana]
Length = 302
Score = 310 bits (795), Expect = 4e-83
Identities = 163/263 (61%), Positives = 201/263 (75%), Gaps = 7/263 (2%)
Query: 28 IMNLEDVPSTLPTHLELQKTRVFCNLDAPQHTDTIQYSGAY-AALGVDNSVRLDNFYQNF 86
I +L DVP+ LP HL+ Q+TRV +AP HT + YSG Y ++ D++V+L NFY NF
Sbjct: 15 IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74
Query: 87 KVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHR 146
KV+V +T +MEFDMIGID A ANAFRRILIAEVP+MAIE+V IA NTS++ DEVL+HR
Sbjct: 75 KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134
Query: 147 LGLIPIDADPKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSEL 206
+GLIPI ADP+LFEY + + NEKNTIVFK HV+C K +PRL V + LKWLPNGSEL
Sbjct: 135 MGLIPIAADPRLFEYLSE-HDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSEL 193
Query: 207 IAEGTKSAADPAPKTFTTF--NQKSLPKFSKDP-APYNLDVIVAKLGPGQEIELEAHAVK 263
+ E + PKT+T+F +Q SLP+F+ +P P +LD+++AKL PGQEIELEAHAVK
Sbjct: 194 LRESENKTS--KPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVK 251
Query: 264 GIGKTHAKWSPVATAWYRMLPEV 286
GIGKTHAKWSPV TAWYRM PEV
Sbjct: 252 GIGKTHAKWSPVGTAWYRMHPEV 274
>ref|XP_467544.1| putative RNA polymerase subunit [Oryza sativa (japonica
cultivar-group)] gi|45736002|dbj|BAD13030.1| putative
RNA polymerase subunit [Oryza sativa (japonica
cultivar-group)]
Length = 300
Score = 292 bits (747), Expect = 1e-77
Identities = 167/367 (45%), Positives = 213/367 (57%), Gaps = 93/367 (25%)
Query: 38 LPTHLELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEE 97
LP HLE+Q+TRV C DAP +T+ QY+GAY+A+G+DNSV + F +NFKVE+ R+T+++
Sbjct: 22 LPEHLEVQRTRVVCKADAPVNTEGFQYAGAYSAMGIDNSVSAEKFCKNFKVEISRLTEDD 81
Query: 98 MEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPK 157
MEFDMIGID ++ANAFRRILIAE+PTMAIE+V + +NTS++ DEVLSHRLGLIP+DADP+
Sbjct: 82 MEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHRLGLIPLDADPR 141
Query: 158 LFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSELIAEGTKSAADP 217
FEY + NE+NTIV+K HV C+KG PRLTVKS L+WLP GS L A P
Sbjct: 142 HFEYMSE-NDVPNERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGSRL------PLASP 194
Query: 218 AP-----KTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIGKTHAKW 272
A KT+T+F+Q K D+ +A+LGPGQ
Sbjct: 195 AQSRYKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQ------------------- 235
Query: 273 SPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNARACTLC 332
VV K++K + AE+LV KCP VFDIED+G
Sbjct: 236 -------------VVFRKEIKGDNAEKLVKKCPVNVFDIEDLGN---------------- 266
Query: 333 RECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKILEDKCE 392
TIESTG +PP+ LFTEAV+ILE+KCE
Sbjct: 267 ---------------------------------VTIESTGGLPPEALFTEAVRILEEKCE 293
Query: 393 RVITELS 399
RVI+ LS
Sbjct: 294 RVISGLS 300
>ref|NP_001008331.1| RNA polymerase 1-1 (predicted) [Rattus norvegicus]
gi|55778316|gb|AAH86597.1| RNA polymerase 1-1
(predicted) [Rattus norvegicus]
Length = 346
Score = 266 bits (681), Expect = 6e-70
Identities = 157/372 (42%), Positives = 217/372 (58%), Gaps = 53/372 (14%)
Query: 42 LELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFD 101
+E +TRV ++ T + G Y+ G D++ D F +NF+V+V + + +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDESTLEFD 64
Query: 102 MIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEY 161
M+GID A+ANAFRRIL+AEVPTMA+E+V + NNTS+VQDE+L+HRLGLIPI ADP+LFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 124
Query: 162 PDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDT-------------LKWLP--NGSEL 206
+ E E +T+ F+ VRC + SD + W+P N +++
Sbjct: 125 RNPGEEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADV 184
Query: 207 IAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIG 266
EGT P + D+++A+L PGQEI+L H VKGIG
Sbjct: 185 FPEGTVR-------------------------PVHDDILIAQLRPGQEIDLMMHCVKGIG 219
Query: 267 KTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNA 326
K HAK+SPVATA YR+LP++ L + V+ E AEEL V ++++ +G+K A V NA
Sbjct: 220 KDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSQCFSPGVIAVQEV-QGKKVARVANA 278
Query: 327 RACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKI 386
R T RE R EK V L RV+DH+IF++ESTG +PPDVL +EA+KI
Sbjct: 279 RLDTFSREIFRH----------EKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKI 328
Query: 387 LEDKCERVITEL 398
L KC R + EL
Sbjct: 329 LMGKCRRFLDEL 340
>gb|AAH72033.1| MGC78824 protein [Xenopus laevis]
Length = 347
Score = 266 bits (680), Expect = 8e-70
Identities = 149/374 (39%), Positives = 225/374 (59%), Gaps = 50/374 (13%)
Query: 39 PTHLELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEM 98
P ++L + RV ++ T + G Y +G D++ F +NF++++ ++ D+ +
Sbjct: 4 PGSVQLIRERVVLGEFGLRNVHTTDFPGNY--MGYDDTWNQGRFEKNFRIDIVKMEDDIL 61
Query: 99 EFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKL 158
EFDM+GID ++ANAFRRIL++EVPT+A+E+VY+ NNTS++QDE+L+HRLGLIPI ADP+L
Sbjct: 62 EFDMVGIDASIANAFRRILLSEVPTVAVEKVYVYNNTSIIQDEILAHRLGLIPIRADPRL 121
Query: 159 FEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLT--------------VKSDTLKWLPNGS 204
FEY E E +T+ F+ +V+C + PR + V + +KWLP G+
Sbjct: 122 FEYRSADDAEGTEIDTLQFELNVKCTR-NPRASKDCSDPNELYLNHKVYTGHMKWLPQGN 180
Query: 205 ELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKG 264
++ D P+T P P + D+++A+L PGQEI + H VKG
Sbjct: 181 QV---------DLFPET-------------DPPRPVHKDILIAQLRPGQEINVIMHCVKG 218
Query: 265 IGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVK 324
IGK HAK+SPVATA YR+LPEV L ++ ELA++L V ++++ G++ A V+
Sbjct: 219 IGKDHAKFSPVATASYRLLPEVTLLSSIEGELADKLQGCFSPGVISVDEV-NGKRVARVE 277
Query: 325 NARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAV 384
NAR T RE R D + V + RV+DH+IF++ESTG +PPD+L +EA+
Sbjct: 278 NARMDTCSREIFRHDD----------LKNLVRMARVRDHYIFSVESTGILPPDILVSEAI 327
Query: 385 KILEDKCERVITEL 398
K+L KC R + EL
Sbjct: 328 KVLMGKCRRFLDEL 341
>emb|CAI42629.1| RP3-337H4.4 [Homo sapiens] gi|14250788|gb|AAH08863.1| RNA
polymerase I subunit, isoform 1 [Homo sapiens]
gi|3914807|sp|O15160|RPA5_HUMAN DNA-directed RNA
polymerase I 40 kDa polypeptide (RPA40) (RPA39)
gi|2266929|gb|AAC14354.1| RNA polymerase I subunit
hRPA39 [Homo sapiens] gi|42560246|ref|NP_976035.1| RNA
polymerase I subunit isoform 1 [Homo sapiens]
Length = 346
Score = 266 bits (679), Expect = 1e-69
Identities = 155/372 (41%), Positives = 217/372 (57%), Gaps = 53/372 (14%)
Query: 42 LELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFD 101
+E ++RV ++ T + G Y+ G D++ D F +NF+V+V + + +EFD
Sbjct: 7 VEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 64
Query: 102 MIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEY 161
M+GID A+ANAFRRIL+AEVPTMA+E+V + NNTS+VQDE+L+HRLGLIPI ADP+LFEY
Sbjct: 65 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 124
Query: 162 PDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDT-------------LKWLP--NGSEL 206
+ E E +T+ F+ VRC + SD + W+P N ++L
Sbjct: 125 RNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADL 184
Query: 207 IAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIG 266
EGT P + D+++A+L PGQEI+L H VKGIG
Sbjct: 185 FPEGTIR-------------------------PVHDDILIAQLRPGQEIDLLMHCVKGIG 219
Query: 267 KTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNA 326
K HAK+SPVATA YR+LP++ L + V+ E AEEL V +++++ +G+K A V N
Sbjct: 220 KDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVARVANP 278
Query: 327 RACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKI 386
R T RE R EK V L RV+DH+IF++ESTG +PPDVL +EA+K+
Sbjct: 279 RLDTFSREIFR----------NEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKV 328
Query: 387 LEDKCERVITEL 398
L KC R + EL
Sbjct: 329 LMGKCRRFLDEL 340
>ref|XP_532147.1| PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) [Canis familiaris]
Length = 346
Score = 265 bits (678), Expect = 1e-69
Identities = 154/368 (41%), Positives = 216/368 (57%), Gaps = 53/368 (14%)
Query: 46 KTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFDMIGI 105
+TRV ++ T + G Y+ G D++ D F +NF+V+V + + +EFDM+GI
Sbjct: 11 RTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGI 68
Query: 106 DPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEYPDDA 165
D A+ANAFRRIL+AEVPTMA+E+V + NNTS+VQDE+L+HRLGLIPI ADP+LFEY +
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 128
Query: 166 GGENNEKNTIVFKQHVRCEKGQPRLTVKSDT-------------LKWLP--NGSELIAEG 210
E E +T+ F+ VRC + SD + W+P N ++L EG
Sbjct: 129 DDEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGNQADLFPEG 188
Query: 211 TKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIGKTHA 270
T P + D+++A+L PGQEI+L H VKGIGK HA
Sbjct: 189 TIR-------------------------PVHDDILIAQLRPGQEIDLLMHCVKGIGKDHA 223
Query: 271 KWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNARACT 330
K+SPVATA YR+LP++ L + V+ + AEEL V +++++ +G+K A V N R T
Sbjct: 224 KFSPVATASYRLLPDITLLEPVEGDAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDT 282
Query: 331 LCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKILEDK 390
RE R+ EK V L RV+DH+IF++ESTG +PPDVL +EA+K+L K
Sbjct: 283 FSREVFRK----------EKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGK 332
Query: 391 CERVITEL 398
C R + EL
Sbjct: 333 CRRFLDEL 340
>ref|NP_033111.1| RNA polymerase 1-1 [Mus musculus] gi|627869|pir||A55082
DNA-directed RNA polymerase (EC 2.7.7.6) 40k chain -
mouse gi|575586|dbj|BAA06735.1| mouse RNA polymerase I
40kD subunit [Mus musculus]
Length = 355
Score = 265 bits (676), Expect = 2e-69
Identities = 157/372 (42%), Positives = 217/372 (58%), Gaps = 53/372 (14%)
Query: 42 LELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFD 101
+E +TRV ++ T + G YA G D++ + F +NF+V V ++ ++ +EFD
Sbjct: 16 VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVGVVQMDEDTLEFD 73
Query: 102 MIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEY 161
M+GID A+ANAFRRIL+A VPTMA+E+V + NNTS+VQDE+L+HRLGLIPI ADP+LFEY
Sbjct: 74 MVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 133
Query: 162 PDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDT-------------LKWLP--NGSEL 206
+ E E +T+ F+ VRC + SD + W+P N +++
Sbjct: 134 RNQGEEEGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADV 193
Query: 207 IAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIG 266
EGT P + D+++A+L PGQEI+L H VKGIG
Sbjct: 194 FPEGTIR-------------------------PVHDDILIAQLRPGQEIDLMMHCVKGIG 228
Query: 267 KTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNA 326
K HAK+SPVATA YR+LP + L + V+ E AEEL V ++E++ +G+K A V NA
Sbjct: 229 KDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANA 287
Query: 327 RACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKI 386
R T RE R EK V L RV+DH+IF++ESTG +PPDVL +EA+KI
Sbjct: 288 RLDTFSREIFRH----------EKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKI 337
Query: 387 LEDKCERVITEL 398
L KC R + EL
Sbjct: 338 LMGKCRRFLDEL 349
>gb|AAH08118.1| POLR1C protein [Homo sapiens]
Length = 338
Score = 265 bits (676), Expect = 2e-69
Identities = 154/368 (41%), Positives = 215/368 (57%), Gaps = 53/368 (14%)
Query: 46 KTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFDMIGI 105
++RV ++ T + G Y+ G D++ D F +NF+V+V + + +EFDM+GI
Sbjct: 3 RSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGI 60
Query: 106 DPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEYPDDA 165
D A+ANAFRRIL+AEVPTMA+E+V + NNTS+VQDE+L+HRLGLIPI ADP+LFEY +
Sbjct: 61 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 120
Query: 166 GGENNEKNTIVFKQHVRCEKGQPRLTVKSDT-------------LKWLP--NGSELIAEG 210
E E +T+ F+ VRC + SD + W+P N ++L EG
Sbjct: 121 DEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEG 180
Query: 211 TKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIGKTHA 270
T P + D+++A+L PGQEI+L H VKGIGK HA
Sbjct: 181 TIR-------------------------PVHDDILIAQLRPGQEIDLLMHCVKGIGKDHA 215
Query: 271 KWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNARACT 330
K+SPVATA YR+LP++ L + V+ E AEEL V +++++ +G+K A V N R T
Sbjct: 216 KFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDT 274
Query: 331 LCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKILEDK 390
RE R EK V L RV+DH+IF++ESTG +PPDVL +EA+K+L K
Sbjct: 275 FSREIFR----------NEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGK 324
Query: 391 CERVITEL 398
C R + EL
Sbjct: 325 CRRFLDEL 332
>sp|P52432|RPA5_MOUSE DNA-directed RNA polymerase I 40 kDa polypeptide (RPA40)
Length = 346
Score = 265 bits (676), Expect = 2e-69
Identities = 157/372 (42%), Positives = 217/372 (58%), Gaps = 53/372 (14%)
Query: 42 LELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFD 101
+E +TRV ++ T + G YA G D++ + F +NF+V V ++ ++ +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVGVVQMDEDTLEFD 64
Query: 102 MIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEY 161
M+GID A+ANAFRRIL+A VPTMA+E+V + NNTS+VQDE+L+HRLGLIPI ADP+LFEY
Sbjct: 65 MVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 124
Query: 162 PDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDT-------------LKWLP--NGSEL 206
+ E E +T+ F+ VRC + SD + W+P N +++
Sbjct: 125 RNQGEEEGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADV 184
Query: 207 IAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIG 266
EGT P + D+++A+L PGQEI+L H VKGIG
Sbjct: 185 FPEGTIR-------------------------PVHDDILIAQLRPGQEIDLMMHCVKGIG 219
Query: 267 KTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNA 326
K HAK+SPVATA YR+LP + L + V+ E AEEL V ++E++ +G+K A V NA
Sbjct: 220 KDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANA 278
Query: 327 RACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKI 386
R T RE R EK V L RV+DH+IF++ESTG +PPDVL +EA+KI
Sbjct: 279 RLDTFSREIFRH----------EKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKI 328
Query: 387 LEDKCERVITEL 398
L KC R + EL
Sbjct: 329 LMGKCRRFLDEL 340
>ref|XP_640267.1| RNA polymerase I subunit [Dictyostelium discoideum]
gi|60468282|gb|EAL66291.1| RNA polymerase III subunit
[Dictyostelium discoideum]
Length = 345
Score = 261 bits (666), Expect = 3e-68
Identities = 143/359 (39%), Positives = 207/359 (56%), Gaps = 41/359 (11%)
Query: 41 HLELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEF 100
+LE ++T+V ++ YSGAY ++G DNS L+ F +NFK+ + + E+ F
Sbjct: 14 NLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELVF 73
Query: 101 DMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFE 160
+MIGID +ANA RRI+I+E+PTMAIE+VYI NNTS++QDEVL+HRLG+IPI DP+ F
Sbjct: 74 EMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKFN 133
Query: 161 YPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDT-----LKWLPNGSELIAEGTKSAA 215
+ E ++T++F+ V+CEK + ++T L W+P
Sbjct: 134 F-KLPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVP-------------- 178
Query: 216 DPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIGKTHAKWSPV 275
T ++ P P P D+ + KL PGQ I+++ + K IG+ H KWSPV
Sbjct: 179 -------TQDQEEMFPNEEDRPRPMEDDIPIMKLRPGQVIDIQCYCEKNIGREHIKWSPV 231
Query: 276 ATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNARACTLCREC 335
TA YR+ P + + K +K + A +L+ KCP KVFDIED G + V CT+CREC
Sbjct: 232 CTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIEDSG----QVVAARPLDCTMCREC 287
Query: 336 IREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKILEDKCERV 394
IR+ + + V + RV+DHFIF+IESTGA+ +F EA+KI +KC V
Sbjct: 288 IRDPE----------FEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKCNIV 336
>gb|AAT68049.1| RNA polymerase I 140 kDa subunit [Danio rerio]
Length = 343
Score = 259 bits (663), Expect = 8e-68
Identities = 153/367 (41%), Positives = 215/367 (57%), Gaps = 51/367 (13%)
Query: 46 KTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFDMIGI 105
+ RV ++ T Y G Y G D++ + F +NF++E+ + +EFDMIGI
Sbjct: 8 RDRVILGEFGVKNVHTTDYPGNYP--GYDDTWDFEKFKKNFRIEIISSDENTLEFDMIGI 65
Query: 106 DPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEYPDDA 165
D A+ANAFRRIL+AEVPTMAIE+V+I NNTS++QDE+L+HRLGL+PI ADP+LFEY +
Sbjct: 66 DAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHRLGLVPIKADPRLFEYRNSE 125
Query: 166 GGENNEKNTIVFKQHVRCEKGQPRLT--------------VKSDTLKWLPNGSELIAEGT 211
E E +TI + V+C + PR + S +KWLP G++
Sbjct: 126 DQEGTEIDTIQLQLKVKCTRN-PRAPKDSSDPKELYLNHMIYSGDIKWLPIGNQ------ 178
Query: 212 KSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIGKTHAK 271
AD F + P + D+++A++ PGQE+++ H VKGIGK HAK
Sbjct: 179 ---AD-------VFADAKI-------GPVHGDILLAQVRPGQELDIVMHCVKGIGKNHAK 221
Query: 272 WSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNARACTL 331
+SPVATA YR+LPE+ L + ++ E AE L V ++E++ GRK A V N+R T
Sbjct: 222 FSPVATASYRLLPEITLLQTIEGEQAERLKRCFSPGVIELENV-NGRKVAKVVNSRLDTC 280
Query: 332 CRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKILEDKC 391
RE +R D V L RV+DHFIF++ESTG +PPDVL TEA+ +L KC
Sbjct: 281 SREVLRHDD----------LKSLVKLGRVRDHFIFSVESTGILPPDVLVTEAINVLMSKC 330
Query: 392 ERVITEL 398
++ +TEL
Sbjct: 331 QKFLTEL 337
>gb|AAH56581.1| RNA polymerase 1-1 [Danio rerio] gi|41056007|ref|NP_956860.1| RNA
polymerase 1-1 [Danio rerio]
Length = 347
Score = 259 bits (662), Expect = 1e-67
Identities = 153/367 (41%), Positives = 215/367 (57%), Gaps = 51/367 (13%)
Query: 46 KTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFDMIGI 105
+ RV ++ T Y G Y G D++ + F +NF++E+ + +EFDMIGI
Sbjct: 12 RDRVILGEFGVKNVHTTDYPGNYP--GYDDTWDFEKFKKNFRIEIISSDENTLEFDMIGI 69
Query: 106 DPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEYPDDA 165
D A+ANAFRRIL+AEVPTMAIE+V+I NNTS++QDE+L+HRLGL+PI ADP+LFEY +
Sbjct: 70 DAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHRLGLVPIKADPRLFEYRNSE 129
Query: 166 GGENNEKNTIVFKQHVRCEKGQPRLT--------------VKSDTLKWLPNGSELIAEGT 211
E E +TI + V+C + PR + S +KWLP G++
Sbjct: 130 DQEGTEIDTIQLQLKVKCTRN-PRAPKDSSDPKELYLNHMIYSGDIKWLPIGNQ------ 182
Query: 212 KSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIGKTHAK 271
AD F + P + D+++A++ PGQE+++ H VKGIGK HAK
Sbjct: 183 ---AD-------VFADAKI-------GPVHGDILLAQVRPGQELDIVMHCVKGIGKDHAK 225
Query: 272 WSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNARACTL 331
+SPVATA YR+LPE+ L + ++ E AE L V ++E++ GRK A V N+R T
Sbjct: 226 FSPVATASYRLLPEITLLQTIEGEQAERLKRCFSPGVIELENV-NGRKVAKVVNSRLDTC 284
Query: 332 CRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKILEDKC 391
RE +R D V L RV+DHFIF++ESTG +PPDVL TEA+ +L KC
Sbjct: 285 SREVLRHDD----------LKSLVKLGRVRDHFIFSVESTGILPPDVLVTEAINVLMSKC 334
Query: 392 ERVITEL 398
++ +TEL
Sbjct: 335 QKFLTEL 341
>ref|XP_419502.1| PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) [Gallus gallus]
Length = 346
Score = 257 bits (656), Expect = 5e-67
Identities = 153/355 (43%), Positives = 211/355 (59%), Gaps = 49/355 (13%)
Query: 57 QHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFDMIGIDPAVANAFRRI 116
++ T + G Y G D++ F + F+V+V R D +EFDM+GID A+ANAFRRI
Sbjct: 22 RNVHTTDFPGNYP--GYDDAWDQRRFEEAFRVDVVREEDGVLEFDMVGIDAAIANAFRRI 79
Query: 117 LIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEYPDDAGGENNEKNTIV 176
L+AEVPTMA+E+V++ NNTS+VQDE+L+HRLGLIPI ADP+LFEY + E E +T+
Sbjct: 80 LLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDEEGTEIDTLQ 139
Query: 177 FKQHVRCEKGQPRLTVKSDT-------------LKWLPNGSELIAEGTKSAADPAPKTFT 223
F+ ++C + SD + W+P G++ D P
Sbjct: 140 FQLKIKCSRNPQAAKESSDPNELYFNHKVYSKHMTWVPLGNQ---------TDLFP---- 186
Query: 224 TFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRML 283
D P + D+++A L PGQEI++ H VKGIGK HAK+SPVATA YR+L
Sbjct: 187 ----------DADFRPVHDDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLL 236
Query: 284 PEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNARACTLCRECIREADEGE 343
P++ L + V+DE AE L V +I++I +G+K A V NAR T RE R
Sbjct: 237 PDITLLQPVEDEAAETLQKCFSPGVIEIQNI-KGKKVARVANARLDTFSREVFRH----- 290
Query: 344 EGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKILEDKCERVITEL 398
EG K + V L RV++H+IF++ESTG +PPDVL TEA+KIL KC+R + EL
Sbjct: 291 ---EGLK--NLVRLARVRNHYIFSVESTGILPPDVLVTEAIKILMGKCQRFLNEL 340
>ref|XP_594490.1| PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39), partial [Bos taurus]
Length = 307
Score = 245 bits (625), Expect = 2e-63
Identities = 145/335 (43%), Positives = 197/335 (58%), Gaps = 55/335 (16%)
Query: 85 NFKVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEV--------PTMAIERVYIANNTS 136
NF+V+V + + +EFDM+GID A+ANAFRRIL+AEV PTMA+E+V + NNTS
Sbjct: 1 NFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVSVDTVAKVPTMAVEKVLVYNNTS 60
Query: 137 LVQDEVLSHRLGLIPIDADPKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDT 196
+VQDE+L+HRLGLIPI ADP+LFEY + E +T+ F+ VRC + SD
Sbjct: 61 IVQDEILAHRLGLIPIHADPRLFEYRNQGDEGGTEIDTLQFRLQVRCTRNPHAAKDSSDP 120
Query: 197 -------------LKWLPNGSELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLD 243
+ W+P G++ AD P+ P + D
Sbjct: 121 NELYVNHRVYTRHMTWVPLGNQ---------ADLFPEGAIR--------------PVHDD 157
Query: 244 VIVAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSK 303
+++A+L PGQEI+L H VKGIGK HAK+SPVATA YR+LP++ L + V+ E AEEL
Sbjct: 158 ILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRC 217
Query: 304 CPAKVFDIEDIGRGRKKAVVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDH 363
V ++++I +G+K A V N R T RE R EK V L RV+DH
Sbjct: 218 FSPGVIEVQEI-QGKKVARVANPRLDTFSREVFR----------NEKLKKVVRLARVRDH 266
Query: 364 FIFTIESTGAIPPDVLFTEAVKILEDKCERVITEL 398
FIF++ESTG +PPDVL +EA+K+L KC+R + EL
Sbjct: 267 FIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 301
>emb|CAA71570.1| homologous to 40kD subunit of RNA-polymerase I and III [Cricetulus
griseus]
Length = 347
Score = 236 bits (602), Expect = 9e-61
Identities = 144/377 (38%), Positives = 211/377 (55%), Gaps = 54/377 (14%)
Query: 40 THLELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEME 99
T + +T + D ++ + G Y DN LD F +N KV + + E M
Sbjct: 1 TRPDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMV 58
Query: 100 FDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADP--- 156
F++ GID ++ANAFRRILIAE+PT+A E VYI NNTS++QDEVLSHR+GL+PI ADP
Sbjct: 59 FEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMF 118
Query: 157 KLFEYP-DDAGGENNEKNTIVFKQHVRC---------EKGQPRLTVKSDT----LKWLPN 202
K F++P + + +T+VF + +C EK RL V S+ L W P
Sbjct: 119 KWFQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQ 178
Query: 203 GSELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDP-APYNLDVIVAKLGPGQEIELEAHA 261
G + +F+ +P N D++VAKL PGQEI+LEAHA
Sbjct: 179 G------------------------RQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHA 214
Query: 262 VKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKA 321
+ GIG+ HAK+SPVATA YR+LP + + ++ E A + P V ++E+ G+K+A
Sbjct: 215 ILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQA 274
Query: 322 VVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFT 381
V + R T+ REC+R + + D+V L RV+DH++F++ESTG + PDVLF
Sbjct: 275 RVADVRKDTVSRECLRHPE----------FADKVQLGRVRDHYLFSVESTGIMKPDVLFI 324
Query: 382 EAVKILEDKCERVITEL 398
+++ +L+ KC V + L
Sbjct: 325 KSIAVLKSKCLAVKSSL 341
>emb|CAB38687.1| SPBC1289.07c [Schizosaccharomyces pombe]
gi|19113623|ref|NP_596831.1| hypothetical protein
SPBC1289.07c [Schizosaccharomyces pombe 972h-]
gi|5531859|gb|AAD44503.1| RNA polymerase subunit Rpc40
[Schizosaccharomyces pombe] gi|7492547|pir||T39358
DNA-directed RNA polymerase (EC 2.7.7.6) chain Rpc40
[validated] - fission yeast (Schizosaccharomyces pombe)
gi|13124507|sp|O94616|RPC5_SCHPO DNA-directed RNA
polymerases I and III 40 kDa polypeptide (AC40)
gi|4760696|dbj|BAA77385.1| RPA42 [Schizosaccharomyces
pombe]
Length = 348
Score = 236 bits (601), Expect = 1e-60
Identities = 143/375 (38%), Positives = 211/375 (56%), Gaps = 54/375 (14%)
Query: 42 LELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFD 101
++ +T + D ++ + G Y DN LD F +N KV + + E M F+
Sbjct: 4 VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFE 61
Query: 102 MIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADP---KL 158
+ GID ++ANAFRRILIAE+PT+A E VYI NNTS++QDEVLSHR+GL+PI ADP K
Sbjct: 62 ISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKW 121
Query: 159 FEYP-DDAGGENNEKNTIVFKQHVRC---------EKGQPRLTVKSDT----LKWLPNGS 204
F++P + + +T+VF + +C EK RL V S+ L W P G
Sbjct: 122 FQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQG- 180
Query: 205 ELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDP-APYNLDVIVAKLGPGQEIELEAHAVK 263
+ +F+ +P N D++VAKL PGQEI+LEAHA+
Sbjct: 181 -----------------------RQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAIL 217
Query: 264 GIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVV 323
GIG+ HAK+SPVATA YR+LP + + ++ E A + P V ++E+ G+K+A V
Sbjct: 218 GIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQARV 277
Query: 324 KNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEA 383
+ R T+ REC+R + + D+V L RV+DH++F++ESTG + PDVLF ++
Sbjct: 278 ADVRKDTVSRECLRHPE----------FADKVQLGRVRDHYLFSVESTGIMKPDVLFIKS 327
Query: 384 VKILEDKCERVITEL 398
+ +L+ KC V + L
Sbjct: 328 IAVLKSKCLAVKSSL 342
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 710,455,298
Number of Sequences: 2540612
Number of extensions: 31366976
Number of successful extensions: 70075
Number of sequences better than 10.0: 159
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 69578
Number of HSP's gapped (non-prelim): 260
length of query: 399
length of database: 863,360,394
effective HSP length: 130
effective length of query: 269
effective length of database: 533,080,834
effective search space: 143398744346
effective search space used: 143398744346
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 76 (33.9 bits)
Medicago: description of AC146751.11