BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146743.2 - phase: 0
(68 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|2019761... 99 2e-20
gb|AAG52315.1| hypothetical protein, 5' partial; 93859-91015 [Ar... 99 4e-20
ref|NP_174828.1| AT hook motif-containing protein-related [Arabi... 99 4e-20
emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228... 97 1e-19
dbj|BAB01023.1| helicase-like protein [Arabidopsis thaliana] 97 1e-19
ref|NP_189677.1| hypothetical protein [Arabidopsis thaliana] 97 1e-19
emb|CAD40309.2| OSJNBb0013O03.4 [Oryza sativa (japonica cultivar... 97 1e-19
dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana] 94 7e-19
ref|NP_189741.1| hypothetical protein [Arabidopsis thaliana] 94 7e-19
ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana] 94 7e-19
ref|NP_912900.1| unnamed protein product [Oryza sativa (japonica... 93 2e-18
ref|XP_483385.1| helicase-like protein [Oryza sativa (japonica c... 92 3e-18
dbj|BAB10788.1| replication protein A1-like [Arabidopsis thalian... 92 4e-18
ref|NP_198346.1| hypothetical protein [Arabidopsis thaliana] 92 4e-18
ref|XP_481695.1| helicase-like protein [Oryza sativa (japonica c... 89 4e-17
ref|XP_479365.1| helicase-like protein [Oryza sativa (japonica c... 89 4e-17
gb|AAX95983.1| hypothetical protein LOC_Os11g13920 [Oryza sativa... 89 4e-17
gb|AAT85173.1| hypothetical protein [Oryza sativa (japonica cult... 88 5e-17
gb|AAD32757.1| putative helicase [Arabidopsis thaliana] gi|25353... 87 1e-16
gb|AAP54108.1| putative helicase [Oryza sativa (japonica cultiva... 87 1e-16
>gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|20197614|gb|AAM15154.1|
unknown protein [Arabidopsis thaliana]
Length = 1308
Score = 99.4 bits (246), Expect = 2e-20
Identities = 47/68 (69%), Positives = 57/68 (83%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQSL HVG+YLP P+FSHGQLYVA+SRV SR GLKILI D++ + +NVV
Sbjct: 1234 MTINKSQGQSLSHVGIYLPRPVFSHGQLYVAVSRVKSRRGLKILIIDEEGNRGKTTTNVV 1293
Query: 61 YREVFRNL 68
++EVF+NL
Sbjct: 1294 FKEVFQNL 1301
>gb|AAG52315.1| hypothetical protein, 5' partial; 93859-91015 [Arabidopsis
thaliana]
Length = 729
Score = 98.6 bits (244), Expect = 4e-20
Identities = 47/68 (69%), Positives = 57/68 (83%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQSLEH+G+YLP P+FSHGQLYVA+SRVTS+ GLKILI D D +NVV
Sbjct: 661 MTINKSQGQSLEHIGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKDGKLQKQTTNVV 720
Query: 61 YREVFRNL 68
++EVF+N+
Sbjct: 721 FKEVFQNI 728
>ref|NP_174828.1| AT hook motif-containing protein-related [Arabidopsis thaliana]
gi|25511694|pir||D86481 189.6K hypothetical protein
F10O5.11 - Arabidopsis thaliana
gi|12322087|gb|AAG51081.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1678
Score = 98.6 bits (244), Expect = 4e-20
Identities = 47/68 (69%), Positives = 57/68 (83%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQSLEH+G+YLP P+FSHGQLYVA+SRVTS+ GLKILI D D +NVV
Sbjct: 1610 MTINKSQGQSLEHIGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKDGKLQKQTTNVV 1669
Query: 61 YREVFRNL 68
++EVF+N+
Sbjct: 1670 FKEVFQNI 1677
>emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228453|ref|NP_189796.1|
AT hook motif-containing protein-related [Arabidopsis
thaliana] gi|11357786|pir||T48965 hypothetical protein
F4M19.60 - Arabidopsis thaliana
Length = 1752
Score = 97.1 bits (240), Expect = 1e-19
Identities = 47/68 (69%), Positives = 57/68 (83%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQSLE VG+YLP P+FSHGQLYVA+SRVTS+ GLKILI D D + +NVV
Sbjct: 1684 MTINKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKDGNMQKQTTNVV 1743
Query: 61 YREVFRNL 68
++EVF+N+
Sbjct: 1744 FKEVFQNI 1751
>dbj|BAB01023.1| helicase-like protein [Arabidopsis thaliana]
Length = 1669
Score = 97.1 bits (240), Expect = 1e-19
Identities = 45/68 (66%), Positives = 56/68 (82%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQSL +VG+YLP P+FSHGQLYVA+SRV S+GGLK+LI D + +NVV
Sbjct: 1602 MTINKSQGQSLGNVGIYLPKPVFSHGQLYVAMSRVKSKGGLKVLITDSKGKQKNETTNVV 1661
Query: 61 YREVFRNL 68
++E+FRNL
Sbjct: 1662 FKEIFRNL 1669
>ref|NP_189677.1| hypothetical protein [Arabidopsis thaliana]
Length = 1473
Score = 97.1 bits (240), Expect = 1e-19
Identities = 45/68 (66%), Positives = 56/68 (82%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQSL +VG+YLP P+FSHGQLYVA+SRV S+GGLK+LI D + +NVV
Sbjct: 1406 MTINKSQGQSLGNVGIYLPKPVFSHGQLYVAMSRVKSKGGLKVLITDSKGKQKNETTNVV 1465
Query: 61 YREVFRNL 68
++E+FRNL
Sbjct: 1466 FKEIFRNL 1473
>emb|CAD40309.2| OSJNBb0013O03.4 [Oryza sativa (japonica cultivar-group)]
Length = 2052
Score = 96.7 bits (239), Expect = 1e-19
Identities = 46/68 (67%), Positives = 53/68 (77%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQ+L HVGVYL P+F+HGQLYV ISR TSR GLKILI DD++ SNVV
Sbjct: 1351 MTINKSQGQTLSHVGVYLKKPVFTHGQLYVVISRATSRSGLKILIEDDNESCASETSNVV 1410
Query: 61 YREVFRNL 68
Y E+ R+L
Sbjct: 1411 YHEILRSL 1418
>dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana]
Length = 1428
Score = 94.4 bits (233), Expect = 7e-19
Identities = 46/68 (67%), Positives = 56/68 (81%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQSLE VG+YLP P+FSHGQLYVA+SRVTS+ GLKILI D + +NVV
Sbjct: 1361 MTINKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKTGLKILILDKEGKIQKQTTNVV 1420
Query: 61 YREVFRNL 68
++EVF+N+
Sbjct: 1421 FKEVFQNI 1428
>ref|NP_189741.1| hypothetical protein [Arabidopsis thaliana]
Length = 1099
Score = 94.4 bits (233), Expect = 7e-19
Identities = 43/68 (63%), Positives = 56/68 (82%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQSL+ VG+YLP P+FSHGQLYVA+SRVTS+ GLK+LI D + + NVV
Sbjct: 1030 MTINKSQGQSLKEVGIYLPKPVFSHGQLYVALSRVTSKKGLKVLIVDKEGNTQSQTMNVV 1089
Query: 61 YREVFRNL 68
++E+F+N+
Sbjct: 1090 FKEIFQNI 1097
>ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana]
Length = 1419
Score = 94.4 bits (233), Expect = 7e-19
Identities = 46/68 (67%), Positives = 56/68 (81%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQSLE VG+YLP P+FSHGQLYVA+SRVTS+ GLKILI D + +NVV
Sbjct: 1352 MTINKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKTGLKILILDKEGKIQKQTTNVV 1411
Query: 61 YREVFRNL 68
++EVF+N+
Sbjct: 1412 FKEVFQNI 1419
>ref|NP_912900.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1270
Score = 92.8 bits (229), Expect = 2e-18
Identities = 43/68 (63%), Positives = 55/68 (80%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
+TINKSQGQ+L VGVYLPSP+FSHGQLYVA+SRVTS GL+ILI + +++ NVV
Sbjct: 1196 LTINKSQGQTLSRVGVYLPSPVFSHGQLYVALSRVTSPDGLRILIENSPTEHVTSTHNVV 1255
Query: 61 YREVFRNL 68
Y+E+F +L
Sbjct: 1256 YKEIFNDL 1263
>ref|XP_483385.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
gi|27817864|dbj|BAC55632.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
gi|42409190|dbj|BAD10456.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 1330
Score = 92.4 bits (228), Expect = 3e-18
Identities = 44/65 (67%), Positives = 51/65 (77%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQ+L+ VG YLPSP+FSHGQLYVA+SRVTS GL+ILIN + N NVV
Sbjct: 1258 MTINKSQGQTLQKVGAYLPSPVFSHGQLYVALSRVTSPKGLRILINSNSSSNEHCTQNVV 1317
Query: 61 YREVF 65
Y E+F
Sbjct: 1318 YHEIF 1322
>dbj|BAB10788.1| replication protein A1-like [Arabidopsis thaliana]
gi|3695387|gb|AAC62789.1| contains similarity to
replication protein A1 [Arabidopsis thaliana]
gi|7487549|pir||T01955 hypothetical protein T2L5.8 -
Arabidopsis thaliana
Length = 1073
Score = 92.0 bits (227), Expect = 4e-18
Identities = 45/68 (66%), Positives = 54/68 (79%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTIN SQGQSLEHVG+YLP +FSHGQLYVA+SRVTS+ GLK LI D D +NVV
Sbjct: 1005 MTINTSQGQSLEHVGLYLPKAVFSHGQLYVALSRVTSKKGLKFLILDKDGKLQKQTTNVV 1064
Query: 61 YREVFRNL 68
++EVF+N+
Sbjct: 1065 FKEVFQNI 1072
>ref|NP_198346.1| hypothetical protein [Arabidopsis thaliana]
Length = 1033
Score = 92.0 bits (227), Expect = 4e-18
Identities = 45/68 (66%), Positives = 54/68 (79%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTIN SQGQSLEHVG+YLP +FSHGQLYVA+SRVTS+ GLK LI D D +NVV
Sbjct: 965 MTINTSQGQSLEHVGLYLPKAVFSHGQLYVALSRVTSKKGLKFLILDKDGKLQKQTTNVV 1024
Query: 61 YREVFRNL 68
++EVF+N+
Sbjct: 1025 FKEVFQNI 1032
>ref|XP_481695.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
gi|38424032|dbj|BAD01692.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
gi|38637630|dbj|BAD03910.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 1430
Score = 88.6 bits (218), Expect = 4e-17
Identities = 44/64 (68%), Positives = 50/64 (77%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQ+L+ VGVYL P+F+HGQLYVAISRVTSR GLKILI +DD N+V
Sbjct: 1324 MTINKSQGQTLQRVGVYLRKPVFTHGQLYVAISRVTSRSGLKILIENDDGSCGTQTKNIV 1383
Query: 61 YREV 64
Y EV
Sbjct: 1384 YSEV 1387
>ref|XP_479365.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
gi|50509840|dbj|BAD32013.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
gi|34394334|dbj|BAC84865.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 1516
Score = 88.6 bits (218), Expect = 4e-17
Identities = 44/64 (68%), Positives = 50/64 (77%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQ+L+ VGVYL P+F+HGQLYVAISRVTSR GLKILI +DD N+V
Sbjct: 1410 MTINKSQGQTLQRVGVYLRKPVFTHGQLYVAISRVTSRSGLKILIENDDGSCGTQTKNIV 1469
Query: 61 YREV 64
Y EV
Sbjct: 1470 YSEV 1473
>gb|AAX95983.1| hypothetical protein LOC_Os11g13920 [Oryza sativa (japonica
cultivar-group)]
Length = 2157
Score = 88.6 bits (218), Expect = 4e-17
Identities = 44/64 (68%), Positives = 50/64 (77%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQ+L+ VGVYL P+F+HGQLYVAISRVTSR GLKILI +DD N+V
Sbjct: 1501 MTINKSQGQTLQRVGVYLRKPVFTHGQLYVAISRVTSRSGLKILIENDDGSCGTQTKNIV 1560
Query: 61 YREV 64
Y EV
Sbjct: 1561 YSEV 1564
>gb|AAT85173.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 807
Score = 88.2 bits (217), Expect = 5e-17
Identities = 44/65 (67%), Positives = 49/65 (74%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQ+L VGVYLPSP+FSHGQLYVA SRVTS GLK+LI + + NVV
Sbjct: 735 MTINKSQGQTLSRVGVYLPSPVFSHGQLYVAFSRVTSPNGLKVLIENSPASYENCTHNVV 794
Query: 61 YREVF 65
Y EVF
Sbjct: 795 YSEVF 799
>gb|AAD32757.1| putative helicase [Arabidopsis thaliana] gi|25353663|pir||H84486
probable helicase [imported] - Arabidopsis thaliana
Length = 1241
Score = 87.0 bits (214), Expect = 1e-16
Identities = 41/68 (60%), Positives = 53/68 (77%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
M I KSQGQSL+ V +YLP P+FSHGQLYVA+SRVTS+ GLK+LI D + + NVV
Sbjct: 1172 MRIKKSQGQSLKEVEIYLPRPVFSHGQLYVALSRVTSKKGLKVLIVDKEGNTQSQTMNVV 1231
Query: 61 YREVFRNL 68
++E+F+NL
Sbjct: 1232 FKEIFQNL 1239
>gb|AAP54108.1| putative helicase [Oryza sativa (japonica cultivar-group)]
gi|37535038|ref|NP_921821.1| putative helicase [Oryza
sativa (japonica cultivar-group)]
gi|14140296|gb|AAK54302.1| putative helicase [Oryza
sativa (japonica cultivar-group)]
Length = 1573
Score = 86.7 bits (213), Expect = 1e-16
Identities = 40/66 (60%), Positives = 52/66 (78%)
Query: 1 MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
MTINKSQGQ+L VG+YLP +F+HGQLYVA+SRVTSR GLKI+I D + + N+V
Sbjct: 1508 MTINKSQGQTLNKVGLYLPRQVFTHGQLYVAVSRVTSRDGLKIMIADKECPGEGMVKNIV 1567
Query: 61 YREVFR 66
Y+E+F+
Sbjct: 1568 YKEIFQ 1573
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.138 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,405,483
Number of Sequences: 2540612
Number of extensions: 3531182
Number of successful extensions: 10455
Number of sequences better than 10.0: 260
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 10251
Number of HSP's gapped (non-prelim): 268
length of query: 68
length of database: 863,360,394
effective HSP length: 44
effective length of query: 24
effective length of database: 751,573,466
effective search space: 18037763184
effective search space used: 18037763184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146743.2