BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146720.2 - phase: 0
(1333 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV24907.1| hypothetical protein [Oryza sativa (japonica cult... 1134 0.0
gb|AAP54850.1| putative gag-pol polyprotein [Oryza sativa (japon... 1080 0.0
gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (ja... 1075 0.0
ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (jap... 1045 0.0
ref|XP_462785.1| putative gag/pol polyprotein [Oryza sativa (jap... 961 0.0
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana] 816 0.0
gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein ... 813 0.0
gb|AAF99727.1| F17L21.7 [Arabidopsis thaliana] 800 0.0
gb|AAG46116.1| putative copia-like retrotransposon polyprotein [... 798 0.0
gb|AAC02664.1| polyprotein [Arabidopsis thaliana] 785 0.0
gb|AAC02666.1| polyprotein [Arabidopsis thaliana] 779 0.0
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana] 779 0.0
gb|AAC02669.1| polyprotein [Arabidopsis thaliana] 778 0.0
gb|AAK43485.1| polyprotein, putative [Arabidopsis thaliana] 771 0.0
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas... 766 0.0
gb|AAK51235.1| polyprotein [Arabidopsis thaliana] 760 0.0
gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis ... 741 0.0
gb|AAC02672.1| polyprotein [Arabidopsis arenosa] gi|7522104|pir|... 736 0.0
gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica ... 686 0.0
emb|CAC95126.1| gag-pol polyprotein [Populus deltoides] 624 e-177
>gb|AAV24907.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|51854440|gb|AAU10819.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1679
Score = 1134 bits (2932), Expect = 0.0
Identities = 645/1441 (44%), Positives = 832/1441 (56%), Gaps = 160/1441 (11%)
Query: 30 RGIAFLIFFDNKNSRALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERM 89
RG+ + F N RAL L EF S YC+ +K+ +D L +VG PV + +
Sbjct: 250 RGLEYQ-FLGNSEQRALNLTTEFHTFQQGDLSV-DEYCRKMKTFADSLGDVGEPVRDRTL 307
Query: 90 VLQLVSGLSEAYDTVGSQIRHSDTLPPFYKARSMVVLEETARAKRTAVTTANSTFLAAQE 149
VL ++GLSE ++ + S + P F + RS++ LEE ++ A + +++ FLA
Sbjct: 308 VLNTLNGLSEKFNNLRSLVPMQRPFPTFAELRSLLRLEELSKPNHAA-SASSAVFLATGS 366
Query: 150 DNNSGNSPSHRPNRNNNSNNGSRGGRGGSGNNH-GGRGRGRGGGRGGRSHNYQQGSWQQP 208
N G + + N GG+G S GG G G GGG GG + N GS
Sbjct: 367 TTNGGKGANPAHGTGYGAGNQGGGGKGNSNRRRRGGNGGGGGGGGGGGNSNQGGGSTVPA 426
Query: 209 QAPQHQWAYPPYQYPSWNAPW----QPWATP-----------PCPY-----------PTT 242
QA QW Q+PS PW W P P P+ P
Sbjct: 427 QAQGAQWRAGS-QWPSPQNPWAGTIHMWPGPLGRGVLGPRPAPSPFAGAALAGPSGGPLP 485
Query: 243 GNWQRPVVPNRQAGILGAKPQQAHVAATPSSYAPTDIQ------------AAMHSLSLA- 289
G VP + A LG + Q V S PT + + SLA
Sbjct: 486 GQVYPAPVPYQTAAGLGQQAQLGGVGQFGPSQPPTSVALQQPLGWFGGAPSQWDQASLAG 545
Query: 290 ---------PPDEQWYMDTGATSHMTANGGNLT----SYSNISNNITVGSGHNIPVIGCG 336
P WYMDTGAT+HMT++ G L+ N ++I VG+G IPV G
Sbjct: 546 SFNTTTLHQPATNDWYMDTGATAHMTSDTGILSLSHPPNPNSPSHIVVGNGSTIPVTSIG 605
Query: 337 NALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMR 396
++ + +P TL ++L +P +IKNL+SVR+F IDN SVEFDPFGFSVKD +T + R
Sbjct: 606 HSKICHPNCSFTLRDILCSPAIIKNLISVRRFVIDNWCSVEFDPFGFSVKDLRTRTVIAR 665
Query: 397 CNSSGDLYPLA-TRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFR 455
NSSG LY L P P+ T + ++ +WH RLGH G LN L + + R
Sbjct: 666 FNSSGPLYSLHHALPPPPAATALLANSSTDLLWHRRLGHLGHDALNRL----AAVVPMTR 721
Query: 456 NNF--FCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFT 513
+ C +CQLG+ ++LPF S S F++ H D+WTSP++S+ G YY++ LDD +
Sbjct: 722 GDLTGVCHACQLGRHVRLPFASSTSRASTNFELFHCDLWTSPVVSASGFKYYLVILDDCS 781
Query: 514 DFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIF 573
++WTFPL KS + F ++KTQF +I+ QCDNG+E+DNS F NG+
Sbjct: 782 HYVWTFPLRFKSDTFTTLSHFFAYVKTQFATNIRSIQCDNGREFDNSAARTFFLTNGVHL 841
Query: 574 RFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLAL 633
R SCPHTSPQNGK ER +R++NNI+R++L A LP SFW AL AT+L+N PTK L
Sbjct: 842 RMSCPHTSPQNGKAERILRSLNNIVRSMLFQAKLPGSFWVEALHTATHLINRHPTKTLDR 901
Query: 634 QTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFEL 693
TP LY PSYSHL+VFGC C+P + +TT +KL RST CVFLGYP H+GY+CF+
Sbjct: 902 HTPHFALYGTHPSYSHLRVFGCKCYPNLSATTPHKLAPRSTMCVFLGYPLYHKGYRCFDP 961
Query: 694 SSRKIIISRHVIFDENTFPFSN--SNIPESSCYNFLD----------------------- 728
S ++IISRHV+FDE++FPF+ + + ++ +FL+
Sbjct: 962 LSNRVIISRHVVFDEHSFPFTELTNGVSNATDLDFLEDFTAPAQAPIGATRRPAVAPTTQ 1021
Query: 729 TSDTPFPYHLFQHTSNLPT---NEPNSHDQPPTTTATPLTTPYSI---NTTTHQPTVAPS 782
T+ +P + L + PT + P P + P TP I +T+ P+ P+
Sbjct: 1022 TASSPMVHGLERPPPCSPTRPVSTPGGPSSPDSRLGPPSPTPALIGPASTSPGPPSAGPA 1081
Query: 783 PQIQTSPQLTITPNTASPHQIPPPNPLLANPPLSPQ------------------------ 818
P T P + A P PP P L P L P
Sbjct: 1082 PSASTCPASSTWETVARP-PTPPGLPRLDGPHLPPAPHVPRRLRSVRATGAPTPLSGLEI 1140
Query: 819 --------MTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYDA 870
MTTRA+ G KP LNLH + +S +P AL D W+ AM++EY+A
Sbjct: 1141 SPVVNDHVMTTRAKSGHHKPVHRLNLHAAP---LSLVPKTYRAALADPLWRAAMEEEYNA 1197
Query: 871 LIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGETFS 930
L+ N+TWDLVPRP+ N++ WIF+HK ADGS +RYKAR V G Q+ GVD ETFS
Sbjct: 1198 LLANRTWDLVPRPAGVNVVTGKWIFKHKFHADGSLDRYKARWVLRGFTQRPGVDFDETFS 1257
Query: 931 PVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHPDYVCLL 990
PVVKPAT+RTVLS+A+S+ W +HQLDVKNAFLHG L ETVY QPPGF D PD VC L
Sbjct: 1258 PVVKPATVRTVLSLAVSRDWPVHQLDVKNAFLHGTLQETVYCTQPPGFVDSAKPDMVCCL 1317
Query: 991 KKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTAS 1050
KSLYGLKQAPRAWY RFT ++ ++GF + D SLFI H G+DT Y+LLYVDDI+LTAS
Sbjct: 1318 NKSLYGLKQAPRAWYSRFTTFLQSIGFVEAKSDTSLFILHRGNDTVYLLLYVDDIVLTAS 1377
Query: 1051 SDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSD----------------------- 1087
S TL +S L EF+MKDLG L +FLG+SVTR+S
Sbjct: 1378 SRTLLHWTISALQGEFSMKDLGALHHFLGVSVTRNSAGLVLSQRQYCIDILERAGMADCK 1437
Query: 1088 ------DTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPKTQ 1141
DT AKLS + G P DP+++RSLAGALQYLTFTRPDISYAVQQVCL MHDP+
Sbjct: 1438 PCNTPVDTTAKLSSSDGPPVADPTDFRSLAGALQYLTFTRPDISYAVQQVCLHMHDPREP 1497
Query: 1142 HMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLV 1201
H+ ALKRI+ YI+G+ GLH+ S+ L Y+DADW GCPDTR+STSGY V+LGDNLV
Sbjct: 1498 HLAALKRILHYIRGSVDLGLHIQRSSACDLAVYSDADWAGCPDTRRSTSGYAVFLGDNLV 1557
Query: 1202 SWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYLS 1261
SWS+KRQ T+SRSSAEAEYR VAN V+E WLR LL EL P ++ATLVYCDNVSAVYLS
Sbjct: 1558 SWSSKRQHTVSRSSAEAEYRAVANAVAEVTWLRQLLQELHSPPSRATLVYCDNVSAVYLS 1617
Query: 1262 GNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDDFRDSLH 1321
NP+QHQRTKH+E+D+HFVRE+VA G VRV+HVP+ Q ADIFTKGLP +F +FR SL+
Sbjct: 1618 SNPVQHQRTKHVEIDLHFVRERVAVGAVRVLHVPTTSQYADIFTKGLPTPVFTEFRSSLN 1677
Query: 1322 I 1322
+
Sbjct: 1678 V 1678
>gb|AAP54850.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536522|ref|NP_922563.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|13310887|gb|AAG13591.2| putative gag/pol polyprotein
[Oryza sativa]
Length = 1417
Score = 1080 bits (2792), Expect = 0.0
Identities = 598/1308 (45%), Positives = 798/1308 (60%), Gaps = 64/1308 (4%)
Query: 36 IFFDNKNSRALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVS 95
+F DN R++YLE EF I+ T + Y +K L+D L ++ PVS VL L+
Sbjct: 120 VFRDNAVQRSVYLETEFRSINQGDM-TITQYTAKLKQLADGLRDINMPVSEPSQVLNLLR 178
Query: 96 GLSEAYDTVGSQIRHSDTLPPFYKARSMVVLEETARAKRTAVTTANSTFLAAQEDNNSGN 155
GL+ + ++ + I + F ARS ++L E + + A A A ++ +
Sbjct: 179 GLNTKFRSLRASIADRNPPHTFMTARSYLLLAEL-QMQHDAKAEAGEALYAGTGSSSGTS 237
Query: 156 SPSHRPNRNNNSNNGSRGGRGGSGNNHGGRGRGRGGGRGGRSHNYQQGSWQQPQAPQHQW 215
+ +P G R GRGG G GG GGG G H+ Q +P AP W
Sbjct: 238 DTTGQPRPKGR---GKRRGRGG-GAPPGGAPSTPGGGAGA-GHDGQP----RPPAP---W 285
Query: 216 AYPPYQ--YPSWNAPWQ-PWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAATPS 272
Y P+ +W P++ P A P P Q + + A P A +
Sbjct: 286 GYNPWTGFVQAWPFPFRAPGAGVLGPRPPFQAQQAMTAQHLLPALPPASPGVHSTGAWDN 345
Query: 273 SYAPTDIQAAMHSLSLAPPDEQWYMDTGATSHMTANGGNLTSYSNI--SNNITVGSGHNI 330
S + +Q+A + + P W++DTGA++HM++ G L + S+ ITVG+G +
Sbjct: 346 SALYSALQSAGVATTTPPSAADWFLDTGASAHMSSTPGILAHPRPLPFSSCITVGNGAKL 405
Query: 331 PVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQT 390
PV + + L L+NVL +P LIKNL+SV+K T DN VS+EFDP GFS+KD QT
Sbjct: 406 PVTHTASTHIPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQT 465
Query: 391 GMPLMRCNSSGDLYPLAT-RPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSI 449
+ +RC+S GDLYPL P+ S T S S E WH RLGHPG + L+ + +
Sbjct: 466 QVVKLRCDSPGDLYPLRLPSPHALSATSSP----SVEHWHLRLGHPGSASLSKVLGSFDF 521
Query: 450 LCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILFL 509
CNK + C +C +G ++LPF+ S S TL PF +VH+D+WTSPI S+ G+ YY++FL
Sbjct: 522 QCNKSAPHH-CSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSNSGYKYYVVFL 580
Query: 510 DDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQN 569
DDFT ++WTFP+ NKS+ F + TQF + Q DNGKEYD+ +
Sbjct: 581 DDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVLALQTDNGKEYDSYALRSLLSLH 640
Query: 570 GMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTK 629
G + R SCP++S QNGK ER +RTIN+ +RT+L H++ P SFW ALQ AT+L+N P +
Sbjct: 641 GAVLRLSCPYSSQQNGKAERILRTINDYVRTMLVHSAAPLSFWAEALQTATHLINRRPCR 700
Query: 630 KLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYK 689
TP +L P+Y HL+VFGCLC+P +T +KL RS CVF+GYP++HRGY+
Sbjct: 701 ATGSLTPYQLLLGAPPTYDHLRVFGCLCYPNTIATAPHKLSPRSLACVFIGYPADHRGYR 760
Query: 690 CFELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFLDTSDTPFPYHLFQHTSNLPTNE 749
C+++ SR++ SRHV F E+ FPF ++ P S P P H LP
Sbjct: 761 CYDMVSRRVFTSRHVTFVEDVFPFRDAPSPRPSA--------PPPPDHGDDTIVLLPA-- 810
Query: 750 PNSHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASP-HQI-PPPN 807
P H P TA H PSP + TP++A+P H + PPP+
Sbjct: 811 PAQHVVTPVGTAP-----------AHDAASPPSPA-------SSTPSSAAPAHDVAPPPS 852
Query: 808 PLLANP----PLSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMA 863
P ++P P MTTRA+ GI KP + +S+ +SP P++ AL+D NW+ A
Sbjct: 853 PETSSPASASPPRHAMTTRARAGISKPNPRYAMTATST--LSPTPSSVRAALRDPNWRAA 910
Query: 864 MKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGV 923
M+ E+DAL+ N+TW LVPRP A II W+F+ K ADGS ++YKAR V G NQ+ GV
Sbjct: 911 MQAEFDALLANRTWTLVPRPPGARIITGKWVFKTKLHADGSLDKYKARWVVRGFNQRPGV 970
Query: 924 DCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQH 983
D GETFSPVVKPATIRTVL++ SK W HQLDV NAFLHG+L E V QP GF D
Sbjct: 971 DFGETFSPVVKPATIRTVLTLISSKQWPAHQLDVSNAFLHGHLQERVLCQQPTGFEDAAR 1030
Query: 984 PDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVD 1043
P VCLL +SLYGL+QAPRAW++RF D+ +LGF S D SLF+ G DTAY+LLYVD
Sbjct: 1031 PADVCLLSRSLYGLRQAPRAWFKRFADHATSLGFVQSRADPSLFVLRRGSDTAYLLLYVD 1090
Query: 1044 DIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSDDTKAKLSGTSGNPYHD 1103
D+IL+ASS +L Q I+ +L +EF +KD+GPL YFLGI V R +D S + + D
Sbjct: 1091 DMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADGFVLSQSKYATD---D 1147
Query: 1104 PSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHL 1163
S YRS+AGALQYLT TRPDI+YAVQQVCL MH P+ H+T LKRI+RYIKGT+ GLHL
Sbjct: 1148 SSWYRSIAGALQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHL 1207
Query: 1164 YPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGV 1223
ST LT ++DADW GCPDTR+STSG+C++LGD+L+SWS+KRQ T+SRSSAEAEYRGV
Sbjct: 1208 RASTSPTLTAFSDADWAGCPDTRRSTSGFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGV 1267
Query: 1224 ANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREK 1283
AN V+E WLR LL EL C V +AT+ YCDN+S+VY+S NP+ H+RTKHIE+DIHFVREK
Sbjct: 1268 ANAVAECTWLRQLLGELHCRVPQATIAYCDNISSVYMSKNPVHHKRTKHIELDIHFVREK 1327
Query: 1284 VARGQVRVMHVPSRYQIADIFTKGLPLQLFDDFRDSLHIRQPPVSTTG 1331
VA G++RV+ +PS +Q AD+FTKGLP +F++FR SL + +T G
Sbjct: 1328 VALGELRVLPIPSAHQFADVFTKGLPSSMFNEFRASLCVGDTTAATAG 1375
>gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530764|ref|NP_919684.1| putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042923|gb|AAM08751.1| Putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1803
Score = 1075 bits (2779), Expect = 0.0
Identities = 599/1326 (45%), Positives = 796/1326 (59%), Gaps = 90/1326 (6%)
Query: 36 IFFDNKNSRALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVS 95
+F DN R++YLE EF I+ T + Y +K L+D L ++ PVS VL L+
Sbjct: 120 VFRDNAVQRSVYLETEFRSINQGDM-TITQYTAKLKQLADGLRDINMPVSEPSQVLNLLR 178
Query: 96 GLSEAYDTVGSQIRHSDTLPPFYKARSMVVLEETARAKRTAVTTANSTFLAAQEDNNSGN 155
GL+ + ++ + I + F ARS ++L E + + A A A ++ +
Sbjct: 179 GLNTKFRSLRASIADRNPPHTFMTARSYLLLAEL-QMQHDAKAEAGEALYAGTGSSSGTS 237
Query: 156 SPSHRPNRNNNSNNGSRGGRGGSGNNHGGRGRGRGGGRGGRSHNYQQGSWQQPQAPQHQW 215
+ +P G R GRGG G GG GGG G H+ Q +P AP W
Sbjct: 238 DTTGQPRPKGR---GKRRGRGG-GAPPGGAPSTPGGGAGA-GHDGQP----RPPAP---W 285
Query: 216 AYPPYQ--YPSWNAPWQ-PWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAATPS 272
Y P+ +W P++ P A P P Q + + A P A +
Sbjct: 286 GYNPWTGFVQAWPFPFRAPGAGVLGPRPPFQAQQAMTAQHLLPALPPASPGVHSTGAWDN 345
Query: 273 SYAPTDIQAAMHSLSLAPPDEQWYMDTGATSHMTANGGNLTSYSNI--SNNITVGSGHNI 330
S + +Q+A + + P W++DTGA++HM++ G L + S+ ITVG+G +
Sbjct: 346 SALYSALQSAGVATTTPPSAADWFLDTGASAHMSSTPGILAHPRPLPFSSCITVGNGAKL 405
Query: 331 PVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQT 390
PV + + L L+NVL +P LIKNL+SV+K T DN VS+EFDP GFS+KD QT
Sbjct: 406 PVTHTASTHIPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQT 465
Query: 391 GMPLMRCNSSGDLYPLAT-RPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSI 449
+ +RC+S GDLYPL P+ S T S S E WH RLGHPG + L+ + +
Sbjct: 466 QVVKLRCDSPGDLYPLRLPSPHALSATSSP----SVEHWHLRLGHPGSASLSKVLGSFDF 521
Query: 450 LCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILFL 509
CNK + C +C +G ++LPF+ S S TL PF +VH+D+WTSPI S+ G+ YY++FL
Sbjct: 522 QCNKSAPHH-CSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSNSGYKYYVVFL 580
Query: 510 DDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQN 569
DDFT ++WTFP+ NKS+ F + TQF + Q DNGKEYD+ +
Sbjct: 581 DDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVLALQTDNGKEYDSYALRSLLSLH 640
Query: 570 GMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTK 629
G + R SCP++S QNGK ER +RTIN+ +RT+L H++ P SFW ALQ A +L+N P +
Sbjct: 641 GAVLRLSCPYSSQQNGKAERILRTINDCVRTMLVHSAAPLSFWAEALQTAMHLINRRPCR 700
Query: 630 KLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYK 689
P +L P+Y HL+VFGCLC+P +T +KL RS CVF+GYP++HRGY+
Sbjct: 701 ATGSLKPYQLLLGAPPTYDHLRVFGCLCYPNTIATAPHKLSPRSLACVFIGYPADHRGYR 760
Query: 690 CFELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFLDTSDTPFPYHLFQHTSNLPTNE 749
C+++ SR++ SRHV F E+ FPF ++ P S P P H LP
Sbjct: 761 CYDMVSRRVFTSRHVTFVEDVFPFRDAPSPRPSA--------PPPPDHGDDTIVLLPA-- 810
Query: 750 PNSHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASP-HQI-PPPN 807
P H P TA H PSP + TP++A+P H + PPP+
Sbjct: 811 PAQHVVTPVGTAP-----------AHDAASPPSPA-------SSTPSSAAPAHDVAPPPS 852
Query: 808 PLLANP----PLSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMA 863
P ++P P MTTRA+ GI KP + +S+ +SP P++ AL+D NW+ A
Sbjct: 853 PETSSPASASPPRHAMTTRARAGISKPNPRYAMTATST--LSPTPSSVRVALRDPNWRAA 910
Query: 864 MKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGV 923
M+ E+DAL+ N+TW LVPRP A II W+F+ K ADGS ++YKAR V G NQ+ GV
Sbjct: 911 MQAEFDALLANRTWTLVPRPPGARIITGKWVFKTKLHADGSLDKYKARWVVRGFNQRPGV 970
Query: 924 DCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQH 983
D GETFSPVVKPATIRTVL++ SK W HQLDV NAFLHG+L E V QP GF D
Sbjct: 971 DFGETFSPVVKPATIRTVLTLISSKQWPAHQLDVSNAFLHGHLQERVLCQQPTGFEDAAR 1030
Query: 984 PDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVD 1043
P VCLL +SLYGL+QAPRAW++RF D+ +LGF S D SLF+ G DTAY+LLYVD
Sbjct: 1031 PADVCLLSRSLYGLRQAPRAWFKRFADHATSLGFVQSRADPSLFVLRRGSDTAYLLLYVD 1090
Query: 1044 DIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSD---------------- 1087
D+IL+ASS +L Q I+ +L +EF +KD+GPL YFLGI V R +D
Sbjct: 1091 DMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADGFVLSQSKYATDVLER 1150
Query: 1088 -------------DTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLF 1134
D K KLS G + D S YRS+AGALQYLT TRPDI+YAVQQVCL
Sbjct: 1151 AGMANCKAVATPADAKPKLSSDEGPLFQDSSWYRSIAGALQYLTLTRPDIAYAVQQVCLH 1210
Query: 1135 MHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCV 1194
MH P+ H+T LKRI+RYIKGT+ GLHL ST LT ++DADW GCPDTR+STSG+C+
Sbjct: 1211 MHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTAFSDADWAGCPDTRRSTSGFCI 1270
Query: 1195 YLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDN 1254
+LGD+L+SWS+KRQ T+SRSSAEAEYRGVAN V+E WLR LL EL C V +AT+ YCDN
Sbjct: 1271 FLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDN 1330
Query: 1255 VSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFD 1314
+S+VY+S NP+ H+RTKHIE+DIHFVREKVA G++RV+ +PS +Q AD+FTKGLP +F+
Sbjct: 1331 ISSVYMSKNPVHHKRTKHIELDIHFVREKVALGELRVLPIPSAHQFADVFTKGLPSSMFN 1390
Query: 1315 DFRDSL 1320
+FR SL
Sbjct: 1391 EFRASL 1396
>ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1090
Score = 1045 bits (2703), Expect = 0.0
Identities = 549/1066 (51%), Positives = 691/1066 (64%), Gaps = 79/1066 (7%)
Query: 323 TVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFG 382
+ G G +P G G V NP ++NL+SVR+FT DN+ S+EFD FG
Sbjct: 37 STGGGGALPGGGGGYQGVANP---------------VRNLLSVRQFTRDNKCSIEFDEFG 81
Query: 383 FSVKDFQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFA----ALSNEIWHNRLGHPGVS 438
FSVKD QT ++RCNS G+LY L P+ TPS+ A A S+ +WH RLGHPG +
Sbjct: 82 FSVKDLQTRRVILRCNSRGELYTL------PAATPSSAAHGLLATSSTLWHCRLGHPGPA 135
Query: 439 ILNSLHRNNSILCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTSPILS 498
++ L SI CNK + C +CQLGK +LPF+ S S T +PF++VH D+WTSP++S
Sbjct: 136 AIHGLRNIASISCNKIDTSL-CHACQLGKHTRLPFHNSSSRTSVPFELVHCDVWTSPVMS 194
Query: 499 SGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYD 558
+ G YY++ LDDF+ F WTF L KS H ++F ++ TQF +K FQ DNG+E+
Sbjct: 195 TSGFKYYLVVLDDFSHFCWTFLLRLKSDVHRHIVEFVEYVSTQFGLPLKSFQADNGREFV 254
Query: 559 NSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQM 618
N+ F G R SCP+TSPQNGK ER +RTINN IRTLL AS+PPS+W AL
Sbjct: 255 NTAITTFLASRGTQLRLSCPYTSPQNGKAERMLRTINNSIRTLLIQASMPPSYWAEALAT 314
Query: 619 ATYLLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVF 678
ATYLLN P+ + P +L++ P +SHL+VFGCLC+P + +TT +KL RST CVF
Sbjct: 315 ATYLLNRRPSSSIHQSLPFQLLHRTIPDFSHLRVFGCLCYPNLSATTPHKLSPRSTACVF 374
Query: 679 LGYPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFLDTSDTPFPYHL 738
LGYP++H+GY+C +LS+ +IIISRHV+FDE+ FPF+ + P +S ++FL +P
Sbjct: 375 LGYPTSHKGYRCLDLSTHRIIISRHVVFDESQFPFA-ATPPAASSFDFLLQGLSPADAPS 433
Query: 739 FQHTSNLP-TNEPNSHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQIQTSPQLTITPNT 797
+ P T P++ + P T + A +P + TS P +
Sbjct: 434 LEVEQPRPLTVAPSTEVEQPYLPLPSRRLSAGTVTVASEAPSAGAPLVGTSSADATPPGS 493
Query: 798 AS----------------PHQIPPPNPLLA--NPPLSPQ---MTTRAQHGIFKPRQLLNL 836
A+ P PP+ A N +PQ M TR+Q G +P L
Sbjct: 494 ATRASTIVSPFRHVYTRRPVTTVPPSSSTAVTNAVAAPQPHSMVTRSQSGSLRPVDRLT- 552
Query: 837 HTSSSNQISPLPTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFR 896
+T++ SP+P N +AL D NW+ AM DEY L+DN TW LV RP ANI WIF+
Sbjct: 553 YTATQAAASPVPANYHSALADPNWRAAMADEYKELVDNGTWRLVSRPPRANIATGKWIFK 612
Query: 897 HKKKADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLD 956
HK +DGS RYKAR V G +QQ G+D ETFSPVVK ATIR VLSIA S++W +HQLD
Sbjct: 613 HKFHSDGSLARYKARWVVRGYSQQHGIDYDETFSPVVKLATIRVVLSIAASRAWPIHQLD 672
Query: 957 VKNAFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLG 1016
VKNAFLHG+L ETVY QP GF DP PD VCLL+KSLYGLKQAPRAWYQRF Y+ +G
Sbjct: 673 VKNAFLHGHLKETVYCQQPSGFVDPTAPDAVCLLQKSLYGLKQAPRAWYQRFATYIRQMG 732
Query: 1017 FSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSY 1076
F S D SLF+Y GD AY+LLYVDDIILTAS+ TL Q + ++L+SEFAM DLG L +
Sbjct: 733 FMPSASDTSLFVYKDGDRIAYLLLYVDDIILTASTTTLLQQLTARLHSEFAMTDLGDLHF 792
Query: 1077 FLGISVTRHSD-----------------------------DTKAKLSGTSGNPYHDPSEY 1107
FLGISV R D DT AKLS T G P DPS Y
Sbjct: 793 FLGISVKRSPDGLFLSQRQYAVDLLQRAGMAECHSTSTPVDTHAKLSATDGLPVADPSAY 852
Query: 1108 RSLAGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPST 1167
RS+AGALQYLT TRPD++YAVQQVCLFMHDP+ H+ +KRI+RY+KG+ + GLH+
Sbjct: 853 RSIAGALQYLTLTRPDLAYAVQQVCLFMHDPREPHLALVKRILRYVKGSLSIGLHIGSGP 912
Query: 1168 VDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVV 1227
+ LT Y+DADW GCP++R+STSGYCVYLGDNLVSWS+KRQ T+SRSSAEAEYR VA+ V
Sbjct: 913 IQSLTAYSDADWAGCPNSRRSTSGYCVYLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAV 972
Query: 1228 SESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARG 1287
+E CWLR LL EL P+ AT+VYCDNVSAVY++ NP+ H+RTKHIE+DIHFVREKVA G
Sbjct: 973 AECCWLRQLLQELHVPIASATIVYCDNVSAVYMTANPVHHRRTKHIEIDIHFVREKVALG 1032
Query: 1288 QVRVMHVPSRYQIADIFTKGLPLQLFDDFRDSLHIRQPPVSTTGVY 1333
QVRV++VPS +Q ADI TKGLP+QLF DFR SL +R PP +T G Y
Sbjct: 1033 QVRVLYVPSSHQFADIMTKGLPVQLFTDFRSSLCVRAPPAATAGRY 1078
>ref|XP_462785.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1373
Score = 961 bits (2483), Expect = 0.0
Identities = 515/1031 (49%), Positives = 642/1031 (61%), Gaps = 94/1031 (9%)
Query: 382 GFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILN 441
G + D +T + RCNSSGDLYP Y P+T+ A +WH RLGH G L+
Sbjct: 350 GGAALDLETRNVIARCNSSGDLYPF----YPPATSTHALLAAPTSLWHRRLGHLGREALS 405
Query: 442 SLHRNNSILCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTSPILSSGG 501
L R++ I C K C +CQLG +LPF S S FD++H D+WTSPI+S G
Sbjct: 406 KLIRSSVISCTKDDLPHLCHACQLGHHTRLPFSSSSSRASNNFDLIHCDLWTSPIVSVSG 465
Query: 502 HHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSH 561
+ YY++ LDD + ++WTFPL KS S F H+KTQF IK QCDNG+E+DNS
Sbjct: 466 YKYYLVILDDCSHYIWTFPLRLKSDTFSTIANFFAHVKTQFGTTIKSVQCDNGREFDNSP 525
Query: 562 FHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATY 621
F +G+ FR SCP+TS QNG+ ER +RT+NNI+R+LL A LPP +W AL AT
Sbjct: 526 ARTFFLSHGVAFRMSCPYTSQQNGRAERSLRTLNNILRSLLFQACLPPVYWVEALHTATL 585
Query: 622 LLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGY 681
L+N +PTK L+ TP LY P+Y HL+VFGC C+P + ST +KL RS+ CVFLGY
Sbjct: 586 LVNRIPTKTLSSSTPYFHLYSTQPTYDHLRVFGCACYPNMSSTAPHKLAPRSSLCVFLGY 645
Query: 682 PSNHRGYKCFELSSRKIIISRHVIFDENTFPF---SNSNIPESSCYNFLDTSDTPF--PY 736
S H+GY+C EL S +II SRHV+FDE+ FPF S S + S+ FLD ++ P
Sbjct: 646 SSEHKGYRCLELGSNRIITSRHVVFDESFFPFADMSTSPMASSALDIFLDDNELTAQPPR 705
Query: 737 HLFQHTS-----------NLPTNEPNS-HDQPPTTTATPLTTPYS---INTTTHQP---- 777
F H + P P+S + P T A P P+ T QP
Sbjct: 706 AKFVHAGTSSAARGAVEPSTPPPAPSSIGPRSPATLAGPEAGPHGGSPAGAATSQPGAIS 765
Query: 778 ---TVAPSPQIQTSPQLTITPNTASPHQIPPPNPL-----------------------LA 811
T APS T+ +T P A+ P +PL LA
Sbjct: 766 PARTAAPSAATSTTRAVTSAPRAATSGTTPSLSPLAGTAAPPPRAEVAASSTAATGRTLA 825
Query: 812 NPPLS-------PQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMAM 864
P+S M TR + G+ +P LNLH + +SP+P + AL D NW+ AM
Sbjct: 826 TRPVSIAPVDNAHSMRTRGKAGMAQPVDRLNLHAA---PLSPVPRSVREALSDPNWRAAM 882
Query: 865 KDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVD 924
+ E+DAL+ N TW LVPRP N++ WIFRHK +DGS +RYKAR V G Q+ GVD
Sbjct: 883 QAEFDALLANDTWSLVPRPRGVNLVTGKWIFRHKLHSDGSLDRYKARWVLRGFTQRPGVD 942
Query: 925 CGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHP 984
ETFSPVVKPAT+R VLS+ALS+ W +HQLDVKNAFLHG L+ETVY QP GF DP H
Sbjct: 943 YDETFSPVVKPATVRVVLSLALSQDWPIHQLDVKNAFLHGTLSETVYCIQPTGFADPSHA 1002
Query: 985 DYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDD 1044
D VC L KSLYGLKQAPRAW+ RF ++ +LGF + D SLFI+ G+DT +LLYVDD
Sbjct: 1003 DLVCRLNKSLYGLKQAPRAWHHRFASHLISLGFIEAQSDSSLFIHRRGNDTVLLLLYVDD 1062
Query: 1045 IILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSD----------------- 1087
I+LTASS +L Q +++ L EFAM D+GPL +FLGI+VTR +
Sbjct: 1063 IVLTASSASLLQQVIAALQREFAMTDMGPLHHFLGITVTRFASGLFLSQRQYSQDILERA 1122
Query: 1088 ------------DTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFM 1135
D +KLS G P D ++YRSLAGALQYLTFTRPDI++AVQQVCL+M
Sbjct: 1123 GMGECKPCSTPVDVHSKLS-ADGPPVADSTQYRSLAGALQYLTFTRPDIAFAVQQVCLYM 1181
Query: 1136 HDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVY 1195
HDP+ H+ ALKRI+RYI+GT + GL + S L YTDADW GCPDTR+STSGY V+
Sbjct: 1182 HDPREPHLAALKRILRYIQGTLSLGLTMRRSPPTDLVVYTDADWAGCPDTRRSTSGYAVF 1241
Query: 1196 LGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNV 1255
LGDNLVSWS+KRQ T+SRSSAEAEYR VAN V+E+ WLR LL+EL P AT+VYCDNV
Sbjct: 1242 LGDNLVSWSSKRQHTVSRSSAEAEYRAVANGVAEATWLRQLLMELHRPPRTATVVYCDNV 1301
Query: 1256 SAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDD 1315
SA+YLS NP+QHQRTKH+E+D+HFVREKVA G VRV+HVP+ Q AD+FTKGLP LF +
Sbjct: 1302 SAMYLSSNPVQHQRTKHVEIDLHFVREKVALGHVRVLHVPTTSQYADVFTKGLPTSLFQE 1361
Query: 1316 FRDSLHIRQPP 1326
FR SL I P
Sbjct: 1362 FRTSLTISDAP 1372
>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
Length = 1429
Score = 816 bits (2108), Expect = 0.0
Identities = 497/1348 (36%), Positives = 702/1348 (51%), Gaps = 147/1348 (10%)
Query: 75 DQLANVGAPVSNERMVLQLVSGLSEAYDTVGSQIRHSDTLPPFYKARSMVV-LEETARAK 133
DQLA + + +E + ++ GLS+ Y V QI D P + ++ E +A
Sbjct: 135 DQLALLEEAIPHEDQIAYILGGLSDDYRRVIDQIEGRDISPSITELHEKLINFELKLQAM 194
Query: 134 RTAVTTANSTFLAAQEDNNSG--NSPSHRPNRNNN-SNNGSRGGRGGSGNNHGGRGRGRG 190
+T + A+ +NN+G N S R N+NN N ++ R NN G +G+G
Sbjct: 195 VPDSSTPVTANAASYNNNNNGRNNRSSSRGNQNNQWQQNQTQQSRS---NNRGSQGKGYQ 251
Query: 191 GGR---GGRSHNYQQGSWQQPQAPQHQWAYPPYQYPSWNAPWQPWATPPCPYPTTGNWQR 247
G G H+ ++ S QP + P YPT G
Sbjct: 252 GRCQICGVHGHSARRCSQFQPYGGSGGSQ-----------------SVPSGYPTNGY--- 291
Query: 248 PVVPNRQAGILGAKPQQAHVAATPSSYAPTDIQAAMHSLSLAPPDEQWYMDTGATSHMTA 307
+PS AP +A +++ APP W +D+GAT H+T+
Sbjct: 292 ----------------------SPSPMAPWQPRA---NIATAPPFNPWVLDSGATHHLTS 326
Query: 308 NGGNLTSYSNISNN--ITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSV 365
+ NL+ + + +T+ G +P+ G+AL+ P L L ++L+ P + KNL+SV
Sbjct: 327 DLANLSMHQPYTGGEEVTIADGSGLPISHTGSALLPTPSRSLALKDILYVPNVSKNLISV 386
Query: 366 RKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLY--PLATRPYYPST-TPSTFAA 422
+ N+VSVEF P F VKD TG L++ + +LY P+ + T +PS
Sbjct: 387 YRLCNANQVSVEFFPAHFQVKDLNTGARLLQGRTRNELYEWPVNQKSITILTASPSPKTD 446
Query: 423 LSNEIWHNRLGHPGVSILNSLHRNNSI-LCNKFRNNFFCQSCQLGKQIKLPFYESLSSTL 481
LS+ WH RLGHP + IL + + + L N C C + K KLPF+ + +
Sbjct: 447 LSS--WHQRLGHPALPILKDVVSHFHLPLSNTIPKQLPCSDCSINKSHKLPFFTNTIVSS 504
Query: 482 LPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQ 541
P + +++D+WTSP +S + YY++ +D FT + W +PL KSQ +F+ F ++ +
Sbjct: 505 QPLEYLYTDVWTSPCISVDNYKYYLVIVDHFTRYTWMYPLKQKSQVKDVFVAFKALVENR 564
Query: 542 FERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTL 601
F+ I+ DNG E+ F +G+ S PHT NG ERK R I L
Sbjct: 565 FQSRIRTLYSDNGGEFIG--LRPFLAAHGISHLTSPPHTPEHNGLAERKHRHIVETGLAL 622
Query: 602 LAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLI 661
L HASLP +FW +A A YL+N +PT+ L +P L+Q SP+Y L+VFGCLC+P +
Sbjct: 623 LTHASLPKTFWTYAFATAVYLINRMPTEVLQGTSPYVKLFQMSPNYLKLRVFGCLCYPWL 682
Query: 662 PSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNSNIPES 721
NKL+ARST CVFLGY Y C ++++ +I SRHV F E++FPF++ E+
Sbjct: 683 RPYNTNKLEARSTMCVFLGYSLTQSAYLCLDIATNRIYTSRHVQFVESSFPFASPRTSET 742
Query: 722 SCYNFLDTSDTPFPYHLFQHTSNL--------------PTNEPNSHDQPPT--------- 758
+ T L Q ++ P + P+S PP+
Sbjct: 743 DSTQTMSQPTTTNVIPLLQRPPHIAPPTALPLCPIFHSPPHSPSSPASPPSEHVPLTAAS 802
Query: 759 ----------------------TTATPLTTPYSINTTTHQPTVAPSPQIQTSPQLTITPN 796
T+ +P TTP + NT+ + P+ Q+ T
Sbjct: 803 SSSNAINDDNISSTGQVSVSGPTSQSPHTTPTNQNTSPLSKSPNPTNTNQSQNSTPPTSP 862
Query: 797 TASPHQ-IPPPNPLLANPPLSP------QMTTRAQHGIFKPRQLLNLHTSSSNQISPLPT 849
T S HQ P P+PL NPPL P M TRA++ I KP+ NL TS ++ +PT
Sbjct: 863 TTSVHQHSPTPSPLPQNPPLPPPPQNDHPMRTRAKNQITKPKTKFNLTTSLTSSKPTIPT 922
Query: 850 NPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYK 909
AL+D NW+ AM +E +A + N TWDLV ++I WIF K DGS RYK
Sbjct: 923 TVAQALKDPNWRNAMSEEINAQMKNHTWDLVSPEEAKHVISCKWIFTLKYNVDGSIARYK 982
Query: 910 ARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNET 969
ARLV G NQQ G+D ETFSPV+K TIRTVL +A+ ++W +HQ+D+ NAFL G LNE
Sbjct: 983 ARLVARGFNQQYGIDYSETFSPVIKSTTIRTVLEVAVKRNWSIHQVDINNAFLQGTLNEE 1042
Query: 970 VYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIY 1029
VY+ QPPGF D P +VC L K+LYGLKQAPRAWYQ ++ GF +S+ D SLFIY
Sbjct: 1043 VYVSQPPGFIDRDRPSHVCRLNKALYGLKQAPRAWYQELRRFLLQAGFVNSLADASLFIY 1102
Query: 1030 HSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSD-- 1087
+ + Y+L+YVDDII+ A + L Q+ + L S F++KDLGPLSYFLGI TR S
Sbjct: 1103 NRHNTFMYVLVYVDDIII-AGENALVQAFNASLASRFSLKDLGPLSYFLGIEATRTSRGL 1161
Query: 1088 ------------------DTK---------AKLSGTSGNPYHDPSEYRSLAGALQYLTFT 1120
DTK KLS SG D +EYR++ G+LQYL FT
Sbjct: 1162 HLMQRKYITDLLKKHNMLDTKPVSTPMSPTPKLSLLSGTALDDATEYRTVLGSLQYLAFT 1221
Query: 1121 RPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWG 1180
RPDI++AV ++ FMH P +H A KRI+RY+ GT +HG+ L T + ++DADWG
Sbjct: 1222 RPDIAFAVNRLSQFMHRPTNEHWQAAKRILRYLAGTKSHGIFLRSDTPLTIHAFSDADWG 1281
Query: 1181 GCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLEL 1240
D ST+ Y VY G + VSWS+K+Q +++RSS EAEYR VAN SE WL +LLLE+
Sbjct: 1282 CDLDAYLSTNAYIVYFGGSPVSWSSKKQRSVARSSTEAEYRAVANTASELRWLCSLLLEM 1341
Query: 1241 QCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQI 1300
T ++YCDN+ A YL NP+ H R KH+ +D HFVR + G +RV HV ++ Q+
Sbjct: 1342 GISQTTVPVIYCDNIGATYLCANPVFHSRMKHVALDYHFVRGYIQSGALRVSHVSTKDQL 1401
Query: 1301 ADIFTKGLPLQLFDDFRDSLHIRQPPVS 1328
AD TK LP F + + +++ P S
Sbjct: 1402 ADALTKPLPRPRFTELNSKIGVQELPPS 1429
>gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein [Zea mays]
gi|7444442|pir||T02087 gag/pol polyprotein - maize
retrotransposon Hopscotch
Length = 1439
Score = 813 bits (2099), Expect = 0.0
Identities = 503/1352 (37%), Positives = 708/1352 (52%), Gaps = 162/1352 (11%)
Query: 61 STASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAYDT-VGSQIRHSDTLPPFYK 119
S+ + Y ++ +D+L G P+ +E V L++GL E ++ V + + SD + P
Sbjct: 141 SSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDL 200
Query: 120 ARSMVVLEETARAKRTAVTTANSTFLAAQEDNNSGNSPSHRPNRNNNSNNGSRGGRGGSG 179
++ E R + T +S+ + +S N+ S P R + G GGRG S
Sbjct: 201 YTQLLSYEN-----RMHLQTGSSSLM-----QSSANARS--PGRGMSW--GRSGGRGFSR 246
Query: 180 NNHGGRGRGRGGGRGG-----RSHNYQQGSWQQPQAPQHQWAYPPYQYPSWNAPWQPWAT 234
GRGRGRG RGG R +NY + + + + N
Sbjct: 247 ----GRGRGRGPSRGGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALN-------- 294
Query: 235 PPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAATPSSYAPTDIQAAMHSLSLAPPDEQ 294
C Y N+ VP++++ A ++V
Sbjct: 295 --CWYRFDENY----VPDQRSANSAAHQNGSNVP-------------------------- 322
Query: 295 WYMDTGATSHMTANGGNLTSYSNIS--NNITVGSGHNIPVIGCGNALVQNPQYPLTLNNV 352
WY DTGAT H+T + LT + + + I +G + + GNA+V L L +V
Sbjct: 323 WYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSV 382
Query: 353 LHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYY 412
LH P KNL+SV + T DN+V +EF F +KD QT L+ LYPL P
Sbjct: 383 LHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLYPLPPHPDL 442
Query: 413 PSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILC-NKFRNNFFCQSCQLGKQIKL 471
+ + E WH RLGHP I++ + NN++ C + C +C K +L
Sbjct: 443 RLKHNFSSTRVPLEHWHKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCDACLQAKAHQL 502
Query: 472 PFYESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIF 531
P+ S+S + P ++ SD++ I S G + YY+ F+DD++ F W + L +KS + F
Sbjct: 503 PYTISMSQSSAPLMLIFSDVFGPAIDSFGRYKYYVSFIDDYSKFTWIYLLRHKSDVYKSF 562
Query: 532 LQFCNHIKTQFERDIKCFQCDNGKEYD--NSHFHQFCKQNGMIFRFSCPHTSPQNGKVER 589
+F + ++ F R I FQ D G EY+ N+HF K G+ + SCPHT QNG ER
Sbjct: 563 CEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHF----KTIGIHHQVSCPHTHQQNGAAER 618
Query: 590 KIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYSH 649
K R I + LLA +S+P +W HA A YL+N P+K +A TP L +P YS
Sbjct: 619 KHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSS 678
Query: 650 LKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDEN 709
L++FGC C+P + ++KLQ RST CVFLGY + H+G+KC ++S+ +I ISR V+FDE+
Sbjct: 679 LRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDEH 738
Query: 710 TFPFSNSN-------------IPESSCYNFLDT--------SDTPFPY---HLFQHTSNL 745
FPF++ N +P SC N + T S +P P+ H Q S +
Sbjct: 739 VFPFASLNKNAGVKYTSEVLLLPHDSCGNNMLTDHANNLPGSSSPLPFLAQHFLQGNSEV 798
Query: 746 PTNE----------PNSHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQ----------- 784
PT+ PN PP + L S T P+P+
Sbjct: 799 PTSNNTAMALPASGPNEVSVPPALVPSSLVPAASPAPTGVSANAEPAPEADSLSSGPPVA 858
Query: 785 ------IQTSPQLTITPNTASPHQIPPPNPLLANPPLSPQMTTRAQHGIFKPRQLLNLHT 838
+ + L P ++ HQ P PL A P TR QHGI KP+Q +
Sbjct: 859 TESVTGVPDADPLLQAPGSSVAHQTPDSAPLSAAAP-----RTRLQHGISKPKQFTDGTV 913
Query: 839 SSSNQISPL--PTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFR 896
N + + P++ AL D W+ AM+ E+ AL N TW LVP N+I W+F+
Sbjct: 914 RYGNAAARITEPSSVSEALADPQWRAAMEAEFQALQKNNTWTLVPPDRTRNLIDCKWVFK 973
Query: 897 HKKKADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLD 956
K ADGS +R KARLV G QQ G+D +TFSPVVK +TIR VLS+A+S+ W L QLD
Sbjct: 974 VKYNADGSIDRLKARLVAKGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLD 1033
Query: 957 VKNAFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLG 1016
V+NAFLHG L ETVYM QPPGF D HP+Y C L+KSLYGLKQ PRAWY R ++ + +LG
Sbjct: 1034 VQNAFLHGILEETVYMKQPPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLG 1093
Query: 1017 FSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSY 1076
F S D SLFIY++ YIL+YVDDII+T SS ++++KL +FA+KDLG L Y
Sbjct: 1094 FVPSKADVSLFIYNAHSTAIYILVYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHY 1153
Query: 1077 FLGISVTRHSDD-----------------------------TKAKLSGTSGN--PYHDPS 1105
FLGI V R D T KLS ++G + +
Sbjct: 1154 FLGIEVHRKGDGLLLCQEKYARDLLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETT 1213
Query: 1106 EYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYP 1165
+YRS+ GALQYLT TRPD+SYA+ +VC F+H P H TA+KRI+R I+ T GL + P
Sbjct: 1214 KYRSVVGALQYLTLTRPDLSYAINRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRP 1273
Query: 1166 STVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVAN 1225
S L+ ++DADW GCPD RKST GY ++LG NL+SW++K+Q T+SRSS EAEY+ +AN
Sbjct: 1274 SLSLMLSAFSDADWAGCPDDRKSTGGYALFLGPNLISWNSKKQSTVSRSSTEAEYKAMAN 1333
Query: 1226 VVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVA 1285
+E WL++LL EL +T ++CDN+ A YLS PI + RTKHIE+D HFVR++V
Sbjct: 1334 ATAEVIWLQSLLHELGIRLTGIPRLWCDNLGATYLSSKPIFNARTKHIEVDFHFVRDRVL 1393
Query: 1286 RGQVRVMHVPSRYQIADIFTKGLPLQLFDDFR 1317
++ + + + Q+AD FTK L + ++FR
Sbjct: 1394 SKKLDIRLISTNDQVADGFTKALTIGRLNEFR 1425
>gb|AAF99727.1| F17L21.7 [Arabidopsis thaliana]
Length = 1534
Score = 800 bits (2067), Expect = 0.0
Identities = 498/1338 (37%), Positives = 694/1338 (51%), Gaps = 142/1338 (10%)
Query: 75 DQLANVGAPVSNERMVLQLVSGLSEAYDTVGSQIRHSDTLPPFYKARSMVVLEETARAKR 134
DQLA +G P+ +E + +V GLS+ Y V QI+ + P S+ + E
Sbjct: 255 DQLALLGKPMESEEQMEVIVEGLSDDYKQVIDQIQGREVPP------SLTEIHEKLLNHE 308
Query: 135 TAVTTANSTFLAAQEDNNSGNSPSHRPNRNNNSNNGSRGGRGGSGNNHGGRGRGRGGGRG 194
+ A S+ S N+ S+RP NN NN NN+ G+ R RG
Sbjct: 309 VKLQAAASSLPI------SANAASYRPPANNKHNNS---------NNYRGQNRNNNN-RG 352
Query: 195 GRSHNYQQGSWQQPQAPQHQWAYPPYQYPSWNAPWQPWATPPCPY-PTTGNWQRPVVPNR 253
S YQQ QP + +Q C G+ R +
Sbjct: 353 ANS--YQQPRNDQPSSRGYQGK--------------------CQICGVFGHSARRCSQLQ 390
Query: 254 QAGILGAKPQQAHVAATPSSYAPTDIQAAMHSLSLAPPDEQWYMDTGATSHMTANGGNLT 313
+G + P++ P +A M ++S P W +D+GAT H+T + NL
Sbjct: 391 MSGAYSTPSPSQY----PNATVPWQPRANMAAMSYNP----WLLDSGATHHLTTDLNNLA 442
Query: 314 SYS--NISNNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTID 371
+ N +T+ G +P+ G++ + L LNN+L+ P L KNL+SV K
Sbjct: 443 LHQPYNGGEEVTIADGSTLPITHTGSSTLSTQSRSLALNNILYVPNLHKNLISVYKLCNA 502
Query: 372 NEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPSTTP-STFAALSNEI--- 427
N+VSVEF P F VKD TG L++ + +LY PS TP S FA+ + +
Sbjct: 503 NKVSVEFFPAHFQVKDLSTGARLLQGRTKDELYEWPV----PSNTPISLFASPTPKTTLP 558
Query: 428 -WHNRLGHPGVSILNSLHRNNSI-LCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFD 485
WH+RLGHP +L SL S+ + N + +F C C + K KLPFY + + P +
Sbjct: 559 SWHSRLGHPSPPVLKSLVSQFSLPVSNSSQKHFPCSHCLINKSHKLPFYSNTIISYTPLE 618
Query: 486 IVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERD 545
V+SD+WTSP+ S YY++ +D +T + W +PL KSQ F+ F ++ +F+
Sbjct: 619 YVYSDVWTSPVTSVDNFKYYLILVDHYTRYTWLYPLKQKSQVRETFVAFKALVENRFQTK 678
Query: 546 IKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHA 605
I+ DNG E+ QF +G+ S PHT NG ERK R I TLL A
Sbjct: 679 IRTLYSDNGGEF--IALRQFLLTHGISHLTSLPHTPEHNGIAERKHRHILETGLTLLTQA 736
Query: 606 SLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTT 665
S+P S+W +A A YL+N LP+ L ++P + L++ SP+Y L+VFGC CFP + T
Sbjct: 737 SIPTSYWTYAFGTAVYLINRLPSSVLNNESPYSKLFKTSPNYLKLRVFGCSCFPWLRPYT 796
Query: 666 RNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDENTFPF--------SNSN 717
+KL+ RS PCVFLGY Y C + SS ++ SRHV F E+ FPF SNS+
Sbjct: 797 NHKLERRSQPCVFLGYSLTQSAYLCLDRSSGRVYTSRHVQFVEDQFPFSISDTHSVSNSS 856
Query: 718 IPESSCYNFLDTSDTPFPYH---LFQHTSNLPTNEPNSHDQPPTTTATPLTT-------- 766
E+S S P L Q S+LP +SH +P T++ ++
Sbjct: 857 PEEASPSCHQPPSRIPIQSSSPPLVQAPSSLPPLSSDSHRRPNAETSSSSSSTNNDVVVS 916
Query: 767 --------------PYSINTTTHQPTVAPSPQIQT----SPQLTITPNTASPHQIPP--- 805
P S ++ Q PS IQT +P + TP +SP P
Sbjct: 917 KDNTQVDNRNNFIGPTSSSSAQSQNNSNPSSSIQTQNEPNPSPSPTPQNSSPESSPSSST 976
Query: 806 ------PNPLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHN 859
PNP P + M TRA++ I KP+ L+L + +P AL+D
Sbjct: 977 SATSTVPNPPPPPPTNNHPMRTRAKNHITKPKTKLSLLAKTVQTRPQIPNTVNQALRDEK 1036
Query: 860 WKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQ 919
W+ AM +E +A I N T++LVP N N+I + WIF K +G+ +RYKARLV G Q
Sbjct: 1037 WRNAMGEEINAQIRNNTFELVPPKPNQNVISTKWIFTLKYLPNGTLDRYKARLVARGFRQ 1096
Query: 920 QTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFR 979
Q G+ ETFSPVVK TIR VL +A+S+SW + QLDV NAFL G L + VY+ QPPGF
Sbjct: 1097 QYGLHYSETFSPVVKSLTIRLVLQLAVSRSWTIKQLDVNNAFLQGTLTDEVYVTQPPGFI 1156
Query: 980 DPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYIL 1039
DP P +VC LKK+LYGLKQAPRAWYQ ++V +LGF++S+ D S+F+Y + Y L
Sbjct: 1157 DPDRPHHVCRLKKALYGLKQAPRAWYQELRNFVCSLGFTNSLADTSVFVYINDIQIVYCL 1216
Query: 1040 LYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSDD----------- 1088
+YVDDII+T SSD L + ++ L+ F++KD L YFLGI TR S
Sbjct: 1217 VYVDDIIVTGSSDALVMAFITALSRRFSLKDPTDLVYFLGIEATRTSQGLHLMQHKYVYD 1276
Query: 1089 ------------------TKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQ 1130
T KLS SG +P EYR++ G+LQYL FTRPDI+YAV +
Sbjct: 1277 LLSRMKMLDAKPVSTPMATHPKLSLYSGIALDEPGEYRTVIGSLQYLAFTRPDIAYAVNR 1336
Query: 1131 VCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTS 1190
+ FMH P H A KR++RY+ GT+THG+ L ++ L ++DADW G D ST+
Sbjct: 1337 LSQFMHRPTDIHWQAAKRVLRYLAGTATHGILLRSNSPLSLHAFSDADWAGDNDDFVSTN 1396
Query: 1191 GYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLV 1250
Y VYLG ++WS+K+Q ++RSS EAEYR VAN SE W+ +LL EL + K ++
Sbjct: 1397 AYIVYLGSTPIAWSSKKQKGVARSSTEAEYRAVANTTSEIRWVCSLLTELGITLPKMPVI 1456
Query: 1251 YCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPL 1310
YCDNV A YLS NP+ H R KH+ +D HF+R+ V+ G +RV H+ + Q+AD TK LP
Sbjct: 1457 YCDNVGATYLSANPVFHSRMKHLALDYHFIRDNVSAGALRVSHISTHDQLADALTKPLPR 1516
Query: 1311 QLFDDFRDSLHIRQPPVS 1328
Q F F + + + P S
Sbjct: 1517 QHFLQFSSKIGVSKLPPS 1534
>gb|AAG46116.1| putative copia-like retrotransposon polyprotein [Oryza sativa]
Length = 1302
Score = 798 bits (2062), Expect = 0.0
Identities = 412/787 (52%), Positives = 529/787 (66%), Gaps = 39/787 (4%)
Query: 540 TQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIR 599
++F + Q DNGKEYD+ +G + R SCP++S QNGK ER +RTIN+ +R
Sbjct: 513 SKFGLPVLALQTDNGKEYDSYALRSLLSLHGAVLRLSCPYSSQQNGKAERILRTINDYVR 572
Query: 600 TLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCLCFP 659
T+L H++ P SFW ALQ AT+L+N P + TP +L P+Y HL+VFGCLC+P
Sbjct: 573 TMLVHSAAPLSFWAEALQTATHLINRRPCRATGSLTPYQLLLGAPPTYDHLRVFGCLCYP 632
Query: 660 LIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNSNIP 719
+T +KL RS CVF+GYP++HRGY+C+++ SR++ SRHV F E+ FPF ++ P
Sbjct: 633 NTIATAPHKLSPRSLACVFIGYPADHRGYRCYDMVSRRVFTSRHVTFVEDVFPFRDAPSP 692
Query: 720 ESSCYNFLDTSDTPFPYHLFQHTSNLPTNEPNSHDQPPTTTATPLTTPYSINTTTHQPTV 779
S P P H LP P H P TA H
Sbjct: 693 RPSA--------PPPPDHGDDTIVLLPA--PAQHVVTPVGTAP-----------AHDAAS 731
Query: 780 APSPQIQTSPQLTITPNTASP-HQI-PPPNPLLANP----PLSPQMTTRAQHGIFKPRQL 833
PSP + TP++A+P H + PPP+P ++P P MTTRA+ GI KP
Sbjct: 732 PPSPA-------SSTPSSAAPAHDVAPPPSPETSSPASASPPRHAMTTRARAGISKPNPR 784
Query: 834 LNLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLW 893
+ +S+ +SP P++ AL+D NW+ AM+ E+DAL+ N+TW LVPRP A II W
Sbjct: 785 YAMTATST--LSPTPSSVRAALRDPNWRAAMQAEFDALLANRTWTLVPRPPGARIITGKW 842
Query: 894 IFRHKKKADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLH 953
+F+ K ADGS ++YKAR V G NQ+ GVD GETFSPVVKPATIRTVL++ SK W H
Sbjct: 843 VFKTKLHADGSLDKYKARWVVRGFNQRPGVDFGETFSPVVKPATIRTVLTLISSKQWPAH 902
Query: 954 QLDVKNAFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVA 1013
QLDV NAFLHG+L E V QP GF D P VCLL +SLYGL+QAPRAW++RF D+
Sbjct: 903 QLDVSNAFLHGHLQERVLCQQPTGFEDAARPADVCLLSRSLYGLRQAPRAWFKRFADHAT 962
Query: 1014 TLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGP 1073
+LGF S D SLF+ G DTAY+LLYVDD+IL+ASS +L Q I+ +L +EF +KD+GP
Sbjct: 963 SLGFVQSRADPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGP 1022
Query: 1074 LSYFLGISVTRHSDDTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCL 1133
L YFLGI V R +D S + + D S YRS+AGALQYLT TRPDI+YAVQQVCL
Sbjct: 1023 LKYFLGIEVQRTADGFVLSQSKYATD---DSSWYRSIAGALQYLTLTRPDIAYAVQQVCL 1079
Query: 1134 FMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYC 1193
MH P+ H+T LKRI+RYIKGT+ GLHL ST LT ++DADW GCPDTR+STSG+C
Sbjct: 1080 HMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTAFSDADWAGCPDTRRSTSGFC 1139
Query: 1194 VYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCD 1253
++LGD+L+SWS+KRQ T+SRSSAEAEYRGVAN V+E WLR LL EL C V +AT+ YCD
Sbjct: 1140 IFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCD 1199
Query: 1254 NVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLF 1313
N+S+VY+S NP+ H+RTKHIE+DIHFVREKVA G++RV+ +PS +Q AD+FTKGLP +F
Sbjct: 1200 NISSVYMSKNPVHHKRTKHIELDIHFVREKVALGELRVLPIPSAHQFADVFTKGLPSSMF 1259
Query: 1314 DDFRDSL 1320
++FR SL
Sbjct: 1260 NEFRASL 1266
Score = 189 bits (479), Expect = 7e-46
Identities = 141/412 (34%), Positives = 204/412 (49%), Gaps = 24/412 (5%)
Query: 36 IFFDNKNSRALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVS 95
+F DN R++YLE EF I+ T + Y +K L+D L ++ PVS VL L+
Sbjct: 120 VFRDNAVQRSVYLETEFRSINQGDM-TITQYTAKLKQLADGLRDINMPVSEPSQVLNLLR 178
Query: 96 GLSEAYDTVGSQIRHSDTLPPFYKARSMVVLEETARAKRTAVTTANSTFLAAQEDNNSGN 155
GL+ + ++ + I + F ARS ++L E + + A A A ++ +
Sbjct: 179 GLNTKFRSLRASIADRNPPHTFMTARSYLLLAEL-QMQHDAKAEAGEALYAGTGSSSGTS 237
Query: 156 SPSHRPNRNNNSNNGSRGGRGGSGNNHGGRGRGRGGGRGGRSHNYQQGSWQQPQAPQHQW 215
+ +P G R GRGG G GG GGG G H+ Q +P AP W
Sbjct: 238 DTTGQPRPKGR---GKRRGRGG-GAPPGGAPSTPGGGAGA-GHDGQP----RPPAP---W 285
Query: 216 AYPPYQ--YPSWNAPWQ-PWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAATPS 272
Y P+ +W P++ P A P P Q + + A P A +
Sbjct: 286 GYNPWTGFVQAWPFPFRAPGAGVLGPRPPFQAQQAMTAQHLLPALPPASPGVHSTGAWDN 345
Query: 273 SYAPTDIQAAMHSLSLAPPDEQWYMDTGATSHMTANGGNLTSYSNI--SNNITVGSGHNI 330
S + +Q+A + + P W++DTGA++HM++ G L + S+ ITVG+G +
Sbjct: 346 SALYSALQSAGVATTTPPSAADWFLDTGASAHMSSTPGILAHPRPLPFSSCITVGNGAKL 405
Query: 331 PVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQT 390
PV + + L L+NVL +P LIKNL+SV+K T DN VS+EFDP GFS+KD QT
Sbjct: 406 PVTHTASTHIPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQT 465
Query: 391 GMPLMRCNSSGDLYPL-ATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILN 441
+ +RC+S GDLYPL P+ S T S S E WH RLGHPG + L+
Sbjct: 466 QVVKLRCDSPGDLYPLRLPSPHALSATSSP----SVEHWHLRLGHPGSASLS 513
>gb|AAC02664.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 785 bits (2026), Expect = 0.0
Identities = 487/1358 (35%), Positives = 683/1358 (49%), Gaps = 151/1358 (11%)
Query: 65 SYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAYDTVGSQIRHSDTLPPFYKARSMV 124
+Y Q + D LA +G E + ++ GL E Y TV QI + P + +
Sbjct: 151 TYFQGFTTRFDHLALLGKAPEREEQIELILGGLPEDYKTVVDQIEGRENPPALTEVLEKL 210
Query: 125 VLEETARAKRTAVTTANSTFLAAQEDNNSGNSPSHRPNRNNNSNNGSRGGRGGSGNNHGG 184
+ E A + T+ T N+ ++R N NNN+N+ S G GN
Sbjct: 211 INHEVKLAAKAEATSVPVT----------ANAVNYRGNNNNNNNSRSNGRNNSRGNT--- 257
Query: 185 RGRGRGGGRGGRSHNYQQGSWQQPQAPQHQWAYPPYQYPSWNAPWQPWATPPCPYPTTGN 244
SWQ Q+ ++ Y P Y C +
Sbjct: 258 -------------------SWQNSQSTSNRQQYTPRPYQG-----------KCQICSVHG 287
Query: 245 WQRPVVPNRQAGILGAKPQQAHVAATPSSYAPTDIQAAMHSLSLAPPDE-QWYMDTGATS 303
P Q Q+ A SYAP +A M +S P + W +D+GAT
Sbjct: 288 HSARRCPQLQQHAGSYASNQSSSA----SYAPWQPRANM--VSATPYNSGNWLLDSGATH 341
Query: 304 HMTANGGNLTSYS--NISNNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHAPKLIKN 361
H+T+N NL + N +T+ G +P+ G+AL+ P L L +VL+ P + KN
Sbjct: 342 HLTSNLNNLALHQPYNGDEEVTIADGSGLPISHSGSALLPTPTRSLALKDVLYVPDIQKN 401
Query: 362 LVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFA 421
L+SV + N VSVEF P F VKD TG L++ + +LY P S S FA
Sbjct: 402 LISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGKTKNELYEW---PVNSSIATSMFA 458
Query: 422 ALSNEI----WHNRLGHPGVSILNSLHRNNSI-LCNKFRNNFFCQSCQLGKQIKLPFYES 476
+ + + WH RLGHP + IL +L S+ + + +N C C + K KLPFY +
Sbjct: 459 SPTPKTDLPSWHARLGHPSLPILKALISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSN 518
Query: 477 LSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCN 536
++ P + +++D+WTSPI S + YY++ +D +T + W +PL KSQ +F+ F
Sbjct: 519 TIASSHPLEYLYTDVWTSPITSIDNYKYYLVIVDHYTRYTWLYPLRKKSQVREMFITFTA 578
Query: 537 HIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINN 596
++ +F+ I DNG E+ F +G+ + PHT NG ERK R I
Sbjct: 579 LVENKFKFKIGTLYSDNGGEF--IAMRSFLASHGISHMTTPPHTPELNGISERKHRHIVE 636
Query: 597 IIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCL 656
TLL+ AS+P +W +A A YL+N + T L ++P L+ + P+Y L++FGCL
Sbjct: 637 TGLTLLSTASMPKEYWSYAFATAVYLINRMLTPVLGNESPYVKLFGQPPNYLKLRIFGCL 696
Query: 657 CFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNS 716
CFP + T +KL RS PCV LGY + Y C + ++ ++ SRHV F E++FPFS +
Sbjct: 697 CFPWLRPYTAHKLDNRSVPCVLLGYSLSQSAYLCLDRATGRVYTSRHVQFAESSFPFSTT 756
Query: 717 N---IPESSCYNFLDTSDTPFPYHLFQHTSNLPTNEPN-----------SHDQPPT---- 758
+ P S DT P L + + P + P+ + PP
Sbjct: 757 SPSVTPPSDPPLSQDTRPVSVPL-LARPLTTAPPSSPSCSAPHRSPSQSENLSPPAPLQP 815
Query: 759 ----TTATPLTTPY-----------SINTTTHQPTVAPSPQ--IQTSPQLT--------- 792
+ +P+T+P T P ++P PQ SPQ T
Sbjct: 816 SLSLSPTSPITSPSLSEESLVGHNSETGPTGSSPPLSPQPQRPQPQSPQSTSPHSSSPQP 875
Query: 793 -----------ITPN-TASPHQIPPPNPLLANPPLSPQMTTRAQHGIFKPR-QLLNLHTS 839
+TP T+SP PPPNP PP+ M TR+++ I KP + NL T
Sbjct: 876 NSPNPQHSPRSLTPTLTSSPSPSPPPNP--NPPPIQHTMRTRSKNNIVKPNPKFANLATK 933
Query: 840 SSNQISPLPTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKK 899
+ +P + AL D NW+ AM DE +A N T+DLVP N N++ W+F K
Sbjct: 934 PTPLKPIIPKTVVEALLDPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVVGCKWVFTLKY 993
Query: 900 KADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKN 959
++G +RYKARLV G +QQ G D ETFSPV+K T+R+VL IA+SK W + Q+DV N
Sbjct: 994 LSNGVLDRYKARLVAKGFHQQYGHDFKETFSPVIKSTTVRSVLHIAVSKGWSIRQIDVNN 1053
Query: 960 AFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSH 1019
AFL G L++ VY+ QPPGF D + +VC L K+LYGLKQAPRAWYQ Y+ T GF +
Sbjct: 1054 AFLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVN 1113
Query: 1020 SVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLG 1079
SV D SLF Y+L+YVDD+++T S + ++ L + F++KDLG +SYFLG
Sbjct: 1114 SVADTSLFTLRHERTILYVLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLG 1173
Query: 1080 ISVTRHSD-----------------------------DTKAKLSGTSGNPYHDPSEYRSL 1110
I TR S KLS TSG P PSEYR++
Sbjct: 1174 IEATRTSKGLHLMQKRYVLDLLEKTNMLAAHPVLTPMSPTPKLSLTSGKPLDKPSEYRAV 1233
Query: 1111 AGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDK 1170
G+LQYL FTRPDI+YAV ++ +MH P H A KRI+RY+ GT +HG+ + T
Sbjct: 1234 LGSLQYLLFTRPDIAYAVNRLSQYMHCPTDLHWQAAKRILRYLAGTPSHGIFIRADTPLT 1293
Query: 1171 LTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSES 1230
L Y+DADW G D ST+ Y +YLG N +SWS+K+Q ++RSS EAEYR VAN SE
Sbjct: 1294 LHAYSDADWAGDIDNYNSTNAYILYLGSNPISWSSKKQKGVARSSTEAEYRAVANATSEI 1353
Query: 1231 CWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVR 1290
W+ +LL EL ++ +VYCDNV A YLS NP+ H R KHI +D HFVRE V G +R
Sbjct: 1354 RWVCSLLTELGITLSSPPVVYCDNVGATYLSANPVFHSRMKHIALDFHFVRESVQAGALR 1413
Query: 1291 VMHVPSRYQIADIFTKGLPLQLFDDFRDSLHIRQPPVS 1328
V HV ++ Q+AD TK LP Q F + + + P S
Sbjct: 1414 VTHVSTKDQLADALTKPLPRQPFTTLISKIGVAKAPPS 1451
>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 779 bits (2012), Expect = 0.0
Identities = 485/1358 (35%), Positives = 682/1358 (49%), Gaps = 151/1358 (11%)
Query: 65 SYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAYDTVGSQIRHSDTLPPFYKARSMV 124
+Y Q + D LA +G E + ++ GL E Y TV QI + P + +
Sbjct: 151 TYFQGFTTRFDHLALLGKAPEREEQIELILGGLPEDYKTVVDQIEGRENPPALTEVLEKL 210
Query: 125 VLEETARAKRTAVTTANSTFLAAQEDNNSGNSPSHRPNRNNNSNNGSRGGRGGSGNNHGG 184
+ E A + T+ T N+ ++R N NNN+N+ S G GN
Sbjct: 211 INHEVKLAAKAEATSVPVT----------ANAVNYRGNNNNNNNSRSNGRNNSRGNT--- 257
Query: 185 RGRGRGGGRGGRSHNYQQGSWQQPQAPQHQWAYPPYQYPSWNAPWQPWATPPCPYPTTGN 244
SWQ Q+ ++ Y P Y C +
Sbjct: 258 -------------------SWQNSQSTSNRQQYTPRPYQG-----------KCQICSVHG 287
Query: 245 WQRPVVPNRQAGILGAKPQQAHVAATPSSYAPTDIQAAMHSLSLAPPDE-QWYMDTGATS 303
P Q Q+ A SYAP +A M +S P + W +D+GAT
Sbjct: 288 HSARRCPQLQQHAGSYASNQSSSA----SYAPWQPRANM--VSATPYNSGNWLLDSGATH 341
Query: 304 HMTANGGNLTSYS--NISNNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHAPKLIKN 361
H+T++ NL + N +T+ G +P+ G+AL+ P L L +VL+ P + KN
Sbjct: 342 HLTSDLNNLALHQPYNGDEEVTIADGSGLPISHSGSALLPTPTRSLALKDVLYVPDIQKN 401
Query: 362 LVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFA 421
L+SV + N VSVEF P F VKD TG L++ + +LY P S S FA
Sbjct: 402 LISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGKTKNELYEW---PVNSSIATSMFA 458
Query: 422 ALSNEI----WHNRLGHPGVSILNSLHRNNSI-LCNKFRNNFFCQSCQLGKQIKLPFYES 476
+ + + WH RLGHP + IL +L S+ + + +N C C + K KLPFY +
Sbjct: 459 SPTPKTDLPSWHARLGHPSLPILKALISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSN 518
Query: 477 LSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCN 536
++ P + +++D+WTSPI S + YY++ +D +T + W +PL KSQ +F+ F
Sbjct: 519 TIASSHPLEYLYTDVWTSPITSIDNYKYYLVIVDHYTRYTWLYPLRKKSQVREMFITFTA 578
Query: 537 HIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINN 596
++ +F+ I DNG E+ F +G+ + PHT NG ERK R I
Sbjct: 579 LVENKFKFKIGTLYSDNGGEF--IAMRSFLASHGISHMTTPPHTPELNGISERKHRHIVE 636
Query: 597 IIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCL 656
TLL+ AS+P +W +A A YL+N + T L ++P L+ + P+Y L++FGCL
Sbjct: 637 TGLTLLSTASMPKEYWSYAFATAVYLINRMLTPVLGNESPYVKLFGQPPNYLKLRIFGCL 696
Query: 657 CFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNS 716
CFP + T +KL RS PCV LGY + Y C + ++ ++ SRHV F E++FPFS +
Sbjct: 697 CFPWLRPYTAHKLDNRSVPCVLLGYSLSQSAYLCLDRATGRVYTSRHVQFAESSFPFSTT 756
Query: 717 N---IPESSCYNFLDTSDTPFPYHLFQHTSNLPTNEPN-----------SHDQPPT---- 758
+ P S DT P L + + P + P+ + PP
Sbjct: 757 SPSVTPPSDPPLSQDTRPVSVPL-LARPLTTAPPSSPSCSAPHRSPSQSENLSPPAPLQP 815
Query: 759 ----TTATPLTTPY-----------SINTTTHQPTVAPSPQ--IQTSPQLT--------- 792
+ +P+T+P T P ++P PQ SPQ T
Sbjct: 816 SLSLSPTSPITSPSLSEESLVGHNSETGPTGSSPPLSPQPQRPQPQSPQSTSPHSSSPQP 875
Query: 793 -----------ITPN-TASPHQIPPPNPLLANPPLSPQMTTRAQHGIFKPR-QLLNLHTS 839
+TP T+SP PPPNP PP+ M TR+++ I KP + NL T
Sbjct: 876 NSPNPQHSPRSLTPTLTSSPSPSPPPNP--NPPPIQHTMRTRSKNNIVKPNPKFANLATK 933
Query: 840 SSNQISPLPTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKK 899
+ +P + AL D NW+ AM DE +A N T+DLVP N N++ W+F K
Sbjct: 934 PTPLKPIIPKTVVEALLDPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVVGCKWVFTLKY 993
Query: 900 KADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKN 959
++G +RYKARLV G +QQ G D ETFSPV+K T+R+VL IA+SK W + Q+DV N
Sbjct: 994 LSNGVLDRYKARLVAKGFHQQYGHDFKETFSPVIKSTTVRSVLHIAVSKGWSIRQIDVNN 1053
Query: 960 AFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSH 1019
AFL G L++ VY+ QPPGF D + +VC L K+LYGLKQAPRAWYQ Y+ T GF +
Sbjct: 1054 AFLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVN 1113
Query: 1020 SVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLG 1079
SV D SLF Y+L+YVDD+++T S + ++ L + F++KDLG +SYFLG
Sbjct: 1114 SVADTSLFTLRHERTILYVLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLG 1173
Query: 1080 ISVTRHSD-----------------------------DTKAKLSGTSGNPYHDPSEYRSL 1110
I TR S KLS TSG P PSEYR++
Sbjct: 1174 IEATRTSKGLHLMQKRYVLDLLEKTNMLAAHPVLTPMSPTPKLSLTSGKPLDKPSEYRAV 1233
Query: 1111 AGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDK 1170
G+LQYL FTRPDI+YAV ++ +MH P H A KRI+RY+ GT +HG+ + T
Sbjct: 1234 LGSLQYLLFTRPDIAYAVNRLSQYMHCPTDLHWQAAKRILRYLAGTPSHGIFIRADTPLT 1293
Query: 1171 LTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSES 1230
L Y+DADW G D ST+ Y +YLG N +SWS+K+Q ++RSS EAEYR VAN SE
Sbjct: 1294 LHAYSDADWAGDIDNYNSTNAYILYLGSNPISWSSKKQKGVARSSTEAEYRAVANATSEI 1353
Query: 1231 CWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVR 1290
W+ +LL EL ++ +VYCDNV A YLS NP+ R KHI +D HFVRE V G +R
Sbjct: 1354 RWVCSLLTELGITLSSPPVVYCDNVGATYLSANPVFDSRMKHIALDFHFVRESVQAGALR 1413
Query: 1291 VMHVPSRYQIADIFTKGLPLQLFDDFRDSLHIRQPPVS 1328
V HV ++ Q+AD TK LP Q F + + + P S
Sbjct: 1414 VTHVSTKDQLADALTKPLPRQPFTTLISKIGVAKAPPS 1451
>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 779 bits (2011), Expect = 0.0
Identities = 483/1344 (35%), Positives = 683/1344 (49%), Gaps = 126/1344 (9%)
Query: 40 NKNSRALYLEQEFS-----KISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLV 94
NK+S A +EFS ++ ++ + S YC+ K + D L+++G PV + +
Sbjct: 117 NKSSIA----REFSLRRNLQLLTKKDKSLSVYCRDFKIICDSLSSIGKPVEESMKIFGFL 172
Query: 95 SGLSEAYDTVGSQIRHSDT---LPPFYKARSMVVLEETARAKRTAVTTANSTFLAAQEDN 151
+GL YD + + I+ S + P F S V ++ + N E +
Sbjct: 173 NGLGREYDPITTVIQSSLSKLPAPTFNDVISEVQGFDSKLQSYDDTVSVNPHLAFNTERS 232
Query: 152 NSGNSPSHRPNRNNNSNNGSRGGRGGSGNNHGGRGRGRGG----GRGGRSHNYQQGSWQQ 207
NSG P N+NS GRG SG N RGRGG GRG
Sbjct: 233 NSG-----APQYNSNSR-----GRGRSGQN-----RGRGGYSTRGRG------------- 264
Query: 208 PQAPQHQWAYPPYQYPSWNAPWQPWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHV 267
QHQ A P + QRPV + G +G + +
Sbjct: 265 --FSQHQSASP------------------------SSGQRPVC--QICGRIGHTAIKCYN 296
Query: 268 AATPSSYAPTDIQAAMHSLSLAPPDEQWYMDTGATSHMTANGGNLTSYSNISNN--ITVG 325
+ + QA ++WY D+ AT+H+TA+ L + + N + VG
Sbjct: 297 RFDNNYQSEVPTQAFSALRVSDETGKEWYPDSAATAHITASTSGLQNATTYEGNDAVLVG 356
Query: 326 SGHNIPVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSV 385
G +P+ G+ + + + + LN VL P + K+L+SV K D V FD +
Sbjct: 357 DGTYLPITHVGSTTISSSKGTIPLNEVLVCPAIQKSLLSVSKLCDDYPCGVYFDANKVCI 416
Query: 386 KDFQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHR 445
D T + + + LY L + + AA S E WH+RLGH IL L
Sbjct: 417 IDLTTQKVVSKGPRNNGLYMLENSEFVALYSNRQCAA-SMETWHHRLGHSNSKILQQLLT 475
Query: 446 NNSILCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIW-TSPILSSGGHHY 504
I NK R + C+ CQ+GK +L F+ S L P D VH D+W SP++S+ G Y
Sbjct: 476 RKEIQVNKSRTSPVCEPCQMGKSTRLQFFSSDFRALKPLDRVHCDLWGPSPVVSNQGFKY 535
Query: 505 YILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQ 564
Y +F+DDF+ F W FPL KS+ S+F+ + ++ Q IK FQ D G E+ ++ +
Sbjct: 536 YAVFVDDFSRFSWFFPLRMKSKFISVFIAYQKLVENQLGTKIKEFQSDGGGEFTSNKLKE 595
Query: 565 FCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLN 624
+++G+ R SCP+T QNG ERK R + + ++L H+ P FW A A YL N
Sbjct: 596 HFREHGIHHRISCPYTPQQNGVAERKHRHLVELGLSMLYHSHTPLKFWVEAFFTANYLSN 655
Query: 625 ILPTKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSN 684
+LP+ L +P L+Q+ Y+ L+VFG C+P + +NK RS CVFLGY +
Sbjct: 656 LLPSSVLKEISPYETLFQQKVDYTPLRVFGTACYPCLRPLAKNKFDPRSLQCVFLGYHNQ 715
Query: 685 HRGYKCFELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFLDTSDTPFPYHLFQHTSN 744
++GY+C + K+ ISRHVIFDE FPF Y+ L +QHT
Sbjct: 716 YKGYRCLYPPTGKVYISRHVIFDEAQFPFKEK-------YHSLVPKYQTTLLQAWQHTDL 768
Query: 745 LPTNEPNSHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASPHQIP 804
P + P+S QP TP+ T + ++ A + ++TS N H++
Sbjct: 769 TPPSVPSSQLQPLARQMTPMATSENQPMMNYETEEAVNVNMETSSDEETESNDEFDHEVA 828
Query: 805 P-------PNPL----LANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPIN 853
P N L L N L P M TR++ GI KP L S S+ P
Sbjct: 829 PVLNDQNEDNALGQGSLEN--LHP-MITRSKDGIQKPNPRYALIVSKSSFDEPKTIT--T 883
Query: 854 ALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLV 913
A++ +W A+ DE D + TW LVP + NI+ S W+F+ K K DG+ ++ KARLV
Sbjct: 884 AMKHPSWNAAVMDEIDRIHMLNTWSLVPATEDMNILTSKWVFKTKLKPDGTIDKLKARLV 943
Query: 914 GNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMY 973
G +Q+ GVD ETFSPVV+ ATIR VL A + W L QLDV NAFLHG L E V+M+
Sbjct: 944 AKGFDQEEGVDYLETFSPVVRTATIRLVLDTATANEWPLKQLDVSNAFLHGELQEPVFMF 1003
Query: 974 QPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGD 1033
QP GF DP P++VC L K+LYGLKQAPRAW+ F++++ GF S D SLF+ H
Sbjct: 1004 QPSGFVDPNKPNHVCRLTKALYGLKQAPRAWFDTFSNFLLDFGFECSTSDPSLFVCHQNG 1063
Query: 1034 DTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSD------ 1087
+ +LLYVDDI+LT S L ++ LN+ F+MKDLGP YFLGI + +++
Sbjct: 1064 QSLILLLYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPPRYFLGIEIESYNNGLFLHQ 1123
Query: 1088 ---------------------DTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISY 1126
L + P+ +P+ +RSLAG LQYLT TRPDI Y
Sbjct: 1124 HAYASDILHQAGMTECNPMPTPLPQHLEDLNSEPFEEPTYFRSLAGKLQYLTITRPDIQY 1183
Query: 1127 AVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTR 1186
AV +C MH P LKRI+RY+KGT GL + L+ + D+D+ GC DTR
Sbjct: 1184 AVNFICQRMHAPTNSDFGLLKRILRYVKGTINMGLPIRKHHNPVLSGFCDSDYAGCKDTR 1243
Query: 1187 KSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTK 1246
+ST+G+C+ LG L+SWSAKRQPT+S SS EAEYR +++ E W+ +LL +L +
Sbjct: 1244 RSTTGFCILLGSTLISWSAKRQPTISHSSTEAEYRALSDTAREITWISSLLRDLGISQHQ 1303
Query: 1247 ATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTK 1306
T V+CDN+SAVYLS NP H+R+KH + D H++RE+VA G + H+P+ Q+AD+FTK
Sbjct: 1304 PTRVFCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVALGLIETQHIPATIQLADVFTK 1363
Query: 1307 GLPLQLFDDFRDSLHIRQPPVSTT 1330
LP + F R L + PVS T
Sbjct: 1364 SLPRRPFITLRAKLGVSASPVSPT 1387
>gb|AAC02669.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 778 bits (2010), Expect = 0.0
Identities = 485/1358 (35%), Positives = 682/1358 (49%), Gaps = 151/1358 (11%)
Query: 65 SYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAYDTVGSQIRHSDTLPPFYKARSMV 124
+Y Q + D LA +G E + ++ GL E Y TV QI + P + +
Sbjct: 151 TYFQGFTTRFDHLALLGKAPEREEQIELILGGLPEDYKTVVDQIEGRENPPALTEVLEKL 210
Query: 125 VLEETARAKRTAVTTANSTFLAAQEDNNSGNSPSHRPNRNNNSNNGSRGGRGGSGNNHGG 184
+ E A + T+ T N+ ++R N NNN+N+ S G GN
Sbjct: 211 INHEVKLAAKAEATSVPVT----------ANAVNYRGNNNNNNNSRSNGRNNSRGNT--- 257
Query: 185 RGRGRGGGRGGRSHNYQQGSWQQPQAPQHQWAYPPYQYPSWNAPWQPWATPPCPYPTTGN 244
SWQ Q+ ++ Y P Y C +
Sbjct: 258 -------------------SWQNSQSTSNRQQYTPRPYQG-----------KCQICSVHG 287
Query: 245 WQRPVVPNRQAGILGAKPQQAHVAATPSSYAPTDIQAAMHSLSLAPPDE-QWYMDTGATS 303
P Q Q+ A SYAP +A M +S P + W +D+GAT
Sbjct: 288 HSARRCPQLQQHAGSYASNQSSSA----SYAPWQPRANM--VSATPYNSGNWLLDSGATH 341
Query: 304 HMTANGGNLTSYS--NISNNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHAPKLIKN 361
H+T++ NL + N +T+ G +P+ G+AL+ P L L +VL+ P + KN
Sbjct: 342 HLTSDLNNLALHQPYNGDEEVTIADGSGLPISHSGSALLPTPTRSLALKDVLYVPDIQKN 401
Query: 362 LVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFA 421
L+SV + N VSVEF P F VKD TG L++ + +LY P S S FA
Sbjct: 402 LISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGKTKNELYEW---PVNSSIATSMFA 458
Query: 422 ALSNEI----WHNRLGHPGVSILNSLHRNNSI-LCNKFRNNFFCQSCQLGKQIKLPFYES 476
+ + + WH RLGHP + IL +L S+ + + +N C C + K KLPFY +
Sbjct: 459 SPTPKTDLPSWHARLGHPSLPILKALISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSN 518
Query: 477 LSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCN 536
++ P + +++D+WTSPI S + YY++ +D +T + W +PL KSQ +F+ F
Sbjct: 519 TIASSHPLEYLYTDVWTSPITSIDNYKYYLVIVDHYTRYTWLYPLRKKSQVREMFITFTA 578
Query: 537 HIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINN 596
++ +F+ I DNG E+ F +G+ + PHT NG ERK R I
Sbjct: 579 LVENKFKFKIGTLYSDNGGEF--IAMRSFLASHGISHMTTPPHTPELNGISERKHRHIVE 636
Query: 597 IIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCL 656
TLL+ AS+P +W +A A YL+N + T L ++P L+ + P+Y L++FGCL
Sbjct: 637 TGLTLLSTASMPKEYWSYAFATAVYLINRMLTPVLGNESPYVKLFGQPPNYLKLRIFGCL 696
Query: 657 CFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNS 716
CFP + T +KL RS PCV LGY + Y C + ++ ++ SRHV F E++FPFS +
Sbjct: 697 CFPWLRPYTAHKLDNRSVPCVLLGYSLSQSAYLCLDRATGRVYTSRHVQFAESSFPFSTT 756
Query: 717 N---IPESSCYNFLDTSDTPFPYHLFQHTSNLPTNEPN-----------SHDQPPT---- 758
+ P S DT P L + + P + P+ + PP
Sbjct: 757 SPSVTPPSDPPLSQDTRPVSVPL-LARPLTTAPPSSPSCSAPHRSPSQSENLSPPAPLQP 815
Query: 759 ----TTATPLTTPY-----------SINTTTHQPTVAPSPQ--IQTSPQLT--------- 792
+ +P+T+P T P ++P PQ SPQ T
Sbjct: 816 SLSLSPTSPITSPSLSEESLVGHNSETGPTGSSPPLSPQPQRPQPQSPQSTSPHSSSPQP 875
Query: 793 -----------ITPN-TASPHQIPPPNPLLANPPLSPQMTTRAQHGIFKPR-QLLNLHTS 839
+TP T+SP PPPNP PP+ M TR+++ I KP + NL T
Sbjct: 876 NSPNPQHSPRSLTPTLTSSPSPSPPPNP--NPPPIQHTMRTRSKNNIVKPNPKFANLATK 933
Query: 840 SSNQISPLPTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKK 899
+ +P + AL D NW+ AM DE +A N T+DLVP N N++ W+F K
Sbjct: 934 PTPLKPIIPKTVVEALLDPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVVGCKWVFTLKY 993
Query: 900 KADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKN 959
++G +RYKARLV G +QQ G D ETFSPV+K T+R+VL IA+SK W + Q+DV N
Sbjct: 994 LSNGVLDRYKARLVAKGFHQQYGHDFKETFSPVIKLTTVRSVLHIAVSKGWSIRQIDVNN 1053
Query: 960 AFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSH 1019
AFL G L++ VY+ QPPGF D + +VC L K+LYGLKQAPRAWYQ Y+ T GF +
Sbjct: 1054 AFLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVN 1113
Query: 1020 SVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLG 1079
SV D SLF Y+L+YVDD+++T S + ++ L + F++KDLG +SYFLG
Sbjct: 1114 SVADTSLFTLRHERTILYVLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLG 1173
Query: 1080 ISVTRHSD-----------------------------DTKAKLSGTSGNPYHDPSEYRSL 1110
I TR S KLS TSG P PSEYR++
Sbjct: 1174 IEATRTSKGLHLMQKRYVLDLLEKTNMLAAHPVLTPMSPTPKLSLTSGKPLDKPSEYRAV 1233
Query: 1111 AGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDK 1170
G+LQYL FTRPDI+YAV ++ +MH P H A KRI+RY+ GT +HG+ + T
Sbjct: 1234 LGSLQYLLFTRPDIAYAVNRLSQYMHCPTDLHWQAAKRILRYLAGTPSHGIFIRADTPLT 1293
Query: 1171 LTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSES 1230
L Y+DADW G D ST+ Y +YLG N +SWS+K+Q ++RSS EAEYR VAN SE
Sbjct: 1294 LHAYSDADWAGDIDNYNSTNAYILYLGSNPISWSSKKQKGVARSSTEAEYRAVANATSEI 1353
Query: 1231 CWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVR 1290
W+ +LL EL ++ +VYCDNV A YLS NP+ R KHI +D HFVRE V G +R
Sbjct: 1354 RWVCSLLTELGITLSSPPVVYCDNVGATYLSANPVFDSRMKHIALDFHFVRESVQAGALR 1413
Query: 1291 VMHVPSRYQIADIFTKGLPLQLFDDFRDSLHIRQPPVS 1328
V HV ++ Q+AD TK LP Q F + + + P S
Sbjct: 1414 VTHVSTKDQLADALTKPLPRQPFTTLISKIGVAKAPPS 1451
>gb|AAK43485.1| polyprotein, putative [Arabidopsis thaliana]
Length = 1459
Score = 771 bits (1992), Expect = 0.0
Identities = 484/1384 (34%), Positives = 687/1384 (48%), Gaps = 162/1384 (11%)
Query: 48 LEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAYDTVGSQ 107
L Q+ +++ + T Y Q + DQLA +G P+ +E V ++ GL E Y TV Q
Sbjct: 135 LRQQIQRLT-KGTKTIDEYVQSHTTRLDQLAILGKPMEHEEQVEHILKGLPEEYKTVVDQ 193
Query: 108 IRHSDTLPPFYKARSMVVLEETARAKRTAVTTANSTFLAAQEDNNSGNSPSHRPNRNNNS 167
I D P + ++ E+ +++ S N+ R N NNN
Sbjct: 194 IEGKDNTPTITEIHERLINHESKLLSDEVPPSSSFPM--------SANAVQQR-NFNNNC 244
Query: 168 NNGSRGGRGGSGNNHGGRGRGRGGGRGGRSHNYQQGSWQQPQA--PQHQWAYPPYQYPSW 225
N N H R +G +HN + QP Q + PY
Sbjct: 245 NQ----------NQHKNRYQGN-------THNNNTNTNSQPSTYNKSGQRTFKPYLGKCQ 287
Query: 226 NAPWQPWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAATPSSYAPTDIQAAMHS 285
Q + CP + Q + A+ S+++P +
Sbjct: 288 ICSVQGHSARRCP----------------------QLQAMQLPASSSAHSPFTPWQPRAN 325
Query: 286 LSLAPP--DEQWYMDTGATSHMTANGGNLTSYS--NISNNITVGSGHNIPVIGCGNALVQ 341
L++ P W +D+GAT H+T++ L+ + N + + G + + G+ +
Sbjct: 326 LAIGSPYAANPWLLDSGATHHITSDLNALSLHQPYNGGEYVMIADGTGLTIKQTGSTFLP 385
Query: 342 NPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSG 401
+ L L+ VL+ P + KNL+SV + N+VSVEF P F VKD TG L++ +
Sbjct: 386 SQNRDLALHKVLYVPDIRKNLISVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKD 445
Query: 402 DLY------PLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFR 455
DLY P AT + T+PS LS+ WH+RLGHP SILN+L S+ +
Sbjct: 446 DLYEWPVTNPPATALF---TSPSPKTTLSS--WHSRLGHPSASILNTLLSKFSLPVSVAS 500
Query: 456 NN-FFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTD 514
+N C C + K KLPF S + P + + +D+WTSPI+S + YY++ +D +T
Sbjct: 501 SNKTSCSDCLINKSHKLPFATSSIHSSSPLEYIFTDVWTSPIISHDNYKYYLVLVDHYTR 560
Query: 515 FLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFR 574
+ W +PL KSQ + F+ F ++ +F+ I+ DNG E+ F NG+
Sbjct: 561 YTWLYPLQQKSQVKATFIAFKALVENRFQAKIRTLYSDNGGEF--IALRDFLVSNGISHL 618
Query: 575 FSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQ 634
S PHT NG ERK R I TLL AS+P +W +A A YL+N +PT L LQ
Sbjct: 619 TSPPHTPEHNGLSERKHRHIVETGLTLLTQASVPREYWTYAFATAVYLINRMPTPVLCLQ 678
Query: 635 TPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELS 694
+P L+ SP+Y L+VFGCLCFP + TRNKL+ RS CVFLGY Y C ++
Sbjct: 679 SPFQKLFGSSPNYQRLRVFGCLCFPWLRPYTRNKLEERSKRCVFLGYSLTQTAYLCLDVD 738
Query: 695 SRKIIISRHVIFDENTFPFSNS----------NIPESSCYNFLDTSDTPFPYHLFQHTS- 743
+ ++ SRHV+FDE+T+PF+ S PESS + +++ FP + + S
Sbjct: 739 NNRLYTSRHVMFDESTYPFAASIREQSQSSLVTPPESSSSS--SPANSGFPCSVLRLQSP 796
Query: 744 -----NLPTNEPNSHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQIQTS---------- 788
P+ +D P + T TP S ++ T++PSP + S
Sbjct: 797 PASSPETPSPPQQQNDSPVSPRQTGSPTP-SHHSQVRDSTLSPSPSVSNSEPTAPHENGP 855
Query: 789 -PQLTITPNTASPHQIPPPNP-----------------LLANPP---------------- 814
P+ PN+ +P PNP A PP
Sbjct: 856 EPEAQSNPNSPFIGPLPNPNPETNPSSSIEQRPVDKSTTTALPPNQTTIAATSNSRSQPP 915
Query: 815 -LSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYDALID 873
+ QM TR+++ I KP+ +L + + P AL+D W+ AM DE+DA
Sbjct: 916 KNNHQMKTRSKNNITKPKTKTSLTVALTQPHLSEPNTVTQALKDKKWRFAMSDEFDAQQR 975
Query: 874 NKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGETFSPVV 933
N TWDLVP +++ W+F+ K +G ++YKARLV G NQQ GVD ETFSPV+
Sbjct: 976 NHTWDLVPPNPTQHLVGCRWVFKLKYLPNGLIDKYKARLVAKGFNQQYGVDYAETFSPVI 1035
Query: 934 KPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKS 993
K TIR VL +A+ K+W L QLDV NAFL G L E VYM QPPGF D P +VC L+K+
Sbjct: 1036 KATTIRVVLDVAVKKNWPLKQLDVNNAFLQGTLTEEVYMAQPPGFVDKDRPSHVCRLRKA 1095
Query: 994 LYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDT 1053
+YGLKQAPRAWY ++ +GF +S+ D SLFIY G Y+L+YVDDII+T S
Sbjct: 1096 IYGLKQAPRAWYMELKQHLLNIGFVNSLADTSLFIYSHGTTLLYLLVYVDDIIVTGSDHK 1155
Query: 1054 LRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSD-------------------------- 1087
+++S L F++KD L YFLGI TR +
Sbjct: 1156 SVSAVLSSLAERFSIKDPTDLHYFLGIEATRTNTGLHLMQRKYMTDLLAKHNMLDAKPVA 1215
Query: 1088 ---DTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMT 1144
T KL+ G +D SEYRS+ G+LQYL FTRPDI++AV ++ FMH P + H
Sbjct: 1216 TPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAFAVNRLSQFMHQPTSDHWQ 1275
Query: 1145 ALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWS 1204
A KR++RY+ GT+THG+ L S+ L ++DADW G ST+ Y +YLG N +SWS
Sbjct: 1276 AAKRVLRYLAGTTTHGIFLNSSSPIHLHAFSDADWAGDSADYVSTNAYVIYLGRNPISWS 1335
Query: 1205 AKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNP 1264
+K+Q +SRSS E+EYR VAN SE WL +LL EL + ++CDN+ A Y+ NP
Sbjct: 1336 SKKQRGVSRSSTESEYRAVANAASEIRWLCSLLTELHIRLPHGPTIFCDNIGATYICANP 1395
Query: 1265 IQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDDFRDSLHIRQ 1324
+ H R KHI +D HFVR + +RV HV + Q+AD TK L F R + +RQ
Sbjct: 1396 VFHSRMKHIALDYHFVRGMIQSRALRVSHVSTNDQLADALTKSLSRPHFLSARSKIGVRQ 1455
Query: 1325 PPVS 1328
P S
Sbjct: 1456 LPPS 1459
>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
Arabidopsis thaliana BAC gb|AF080119 and is a member of
the reverse transcriptase family PF|00078
gi|25301706|pir||C86438 hypothetical protein F28K20.17 -
Arabidopsis thaliana
Length = 1415
Score = 766 bits (1977), Expect = 0.0
Identities = 473/1331 (35%), Positives = 679/1331 (50%), Gaps = 126/1331 (9%)
Query: 40 NKNS--RALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGL 97
NK+S R L Q +S ++ S YC+ K++ D L+++G PV + ++GL
Sbjct: 117 NKSSVAREFSLRQNLQLLSKKE-KPFSVYCREFKTICDALSSIGKPVDESMKIFGFLNGL 175
Query: 98 SEAYDTVGSQIRHSDTLPPFYKARSMVVLEETARAKRTAVTTANST--FLAAQEDNNSGN 155
YD + + I+ S + P +V + +K + A S LA + +
Sbjct: 176 GRDYDPITTVIQSSLSKLPTPTFNDVVSEVQGFDSKLQSYEEAASVTPHLAFNIERSESG 235
Query: 156 SPSHRPNRNNNSNNGSRGGRGGSGNNHGGRGRGRGGGRGGRSHNYQQGSWQQPQAPQHQW 215
SP + PN+ +G GRGG + RGRG QHQ
Sbjct: 236 SPQYNPNQKGRGRSGQNKGRGG----YSTRGRGFS---------------------QHQS 270
Query: 216 AYPPYQYPSWNAPWQPWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAATPSSYA 275
+ P + P RPV I G + H A +
Sbjct: 271 S------PQVSGP------------------RPVCQ-----ICG---RTGHTALKCYNRF 298
Query: 276 PTDIQAAMHSLS-LAPPDE---QWYMDTGATSHMTANGGNLTSYSNISNN--ITVGSGHN 329
+ QA + + S L D+ +W+ D+ AT+H+T++ L S + + + VG G
Sbjct: 299 DNNYQAEIQAFSTLRVSDDTGKEWHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTY 358
Query: 330 IPVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQ 389
+P+ G+ +++ + LN VL P + K+L+SV K D V FD + D Q
Sbjct: 359 LPITHTGSTTIKSSNGKIPLNEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQ 418
Query: 390 TGMPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSI 449
T + LY L + + + AA + E+WH+RLGH L L + +I
Sbjct: 419 TQKVVTTGPRRNGLYVLENQEFVALYSNRQCAA-TEEVWHHRLGHANSKALQHLQNSKAI 477
Query: 450 LCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIW-TSPILSSGGHHYYILF 508
NK R + C+ CQ+GK +LPF S S L P D +H D+W SP++S+ G YY +F
Sbjct: 478 QINKSRTSPVCEPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIF 537
Query: 509 LDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQ 568
+DD++ + W +PL NKS+ S+F+ F ++ Q IK FQ D G E+ ++ +
Sbjct: 538 VDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSE 597
Query: 569 NGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPT 628
+G+ R SCP+T QNG ERK R + + ++L H+ P FW + A Y++N LP+
Sbjct: 598 HGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPS 657
Query: 629 KKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGY 688
L +P L+ + P YS L+VFG C+P + +NK RS CVFLGY S ++GY
Sbjct: 658 SVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGY 717
Query: 689 KCFELSSRKIIISRHVIFDENTFPFSN---SNIPESSCYNFLDTSDTPFPYHLFQHTSNL 745
+CF + K+ ISR+VIF+E+ PF S +P+ S TP +QH
Sbjct: 718 RCFYPPTGKVYISRNVIFNESELPFKEKYQSLVPQYS---------TPL-LQAWQHNKI- 766
Query: 746 PTNEPNSHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASPHQIPP 805
S P + P +NT + T P+ T + P
Sbjct: 767 ------SEISVPAAPVQLFSKPIDLNTYAGSQVT----EQLTDPEPTSNNEGSDEEVNPV 816
Query: 806 PNPLLANPPL---SPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKM 862
+ AN S MTTR++ GI KP L TS N P +A++ W
Sbjct: 817 AEEIAANQEQVINSHAMTTRSKAGIQKPNTRYALITSRMNTAEPKTL--ASAMKHPGWNE 874
Query: 863 AMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTG 922
A+ +E + + TW LVP + NI+ S W+F+ K DGS ++ KARLV G +Q+ G
Sbjct: 875 AVHEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEG 934
Query: 923 VDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQ 982
VD ETFSPVV+ ATIR VL ++ SK W + QLDV NAFLHG L E V+MYQP GF DPQ
Sbjct: 935 VDYLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQ 994
Query: 983 HPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYV 1042
P +VC L K++YGLKQAPRAW+ F++++ GF S D SLF+ H Y+LLYV
Sbjct: 995 KPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYV 1054
Query: 1043 DDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISV-----------TRHSDDTKA 1091
DDI+LT S +L + ++ L + F+MKDLGP YFLGI + T ++ D
Sbjct: 1055 DDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANGLFLHQTAYATDILQ 1114
Query: 1092 KLSGTSGNP----------------YHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFM 1135
+ + NP + +P+ +RSLAG LQYLT TRPDI +AV +C M
Sbjct: 1115 QAGMSDCNPMPTPLPQQLDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRM 1174
Query: 1136 HDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVY 1195
H P T LKRI+RYIKGT GL + ++ L+ Y+D+D GC +TR+ST+G+C+
Sbjct: 1175 HSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCIL 1234
Query: 1196 LGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNV 1255
LG NL+SWSAKRQPT+S SS EAEYR + E W+ LL +L P T VYCDN+
Sbjct: 1235 LGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQYLPTQVYCDNL 1294
Query: 1256 SAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDD 1315
SAVYLS NP H R+KH + D H++RE+VA G + H+ + +Q+AD+FTK LP + F D
Sbjct: 1295 SAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQHISATFQLADVFTKSLPRRAFVD 1354
Query: 1316 FRDSLHIRQPP 1326
R L + P
Sbjct: 1355 LRSKLGVSGSP 1365
>gb|AAK51235.1| polyprotein [Arabidopsis thaliana]
Length = 1453
Score = 760 bits (1963), Expect = 0.0
Identities = 483/1346 (35%), Positives = 679/1346 (49%), Gaps = 124/1346 (9%)
Query: 40 NKNS--RALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGL 97
NK+S R L + +S + T S+YC+ ++ D L+++G PV + ++GL
Sbjct: 117 NKSSVAREFTLRRTLQLLSKKD-KTLSAYCREFIAVCDALSSIGKPVDESMKIFGFLNGL 175
Query: 98 SEAYDTVGSQIRHS--DTLPPFYKARSMVVLEETARAKRTAVTTANSTFLAAQEDNNSGN 155
YD + + I+ S PP ++ V + + + + +A
Sbjct: 176 GREYDPITTVIQSSLSKISPPTFRDVISEVKGFDVKLQSYEESVTANPHMAFN------- 228
Query: 156 SPSHRPNRNNNSNNGSRG-GRGGSGNNHGGRGRGRGGGRGGRSHNYQQGSWQQPQAPQHQ 214
+ R +N +G+RG GRGG G N G G G RG H +
Sbjct: 229 --TQRSEYTDNYTSGNRGKGRGGYGQNRGRSGYSTRG-RGFSQHQTNSNN---------- 275
Query: 215 WAYPPYQYPSWNAPWQPWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAATPSSY 274
TG +RPV + G G + + +Y
Sbjct: 276 ---------------------------TG--ERPVC--QICGRTGHTALKCY-NRFDHNY 303
Query: 275 APTDIQAAMHSLSLAPPD-EQWYMDTGATSHMTANGGNLTSYS--NISNNITVGSGHNIP 331
D A SL ++ ++W D+ AT+H+T++ NL + S N S+ + VG G +P
Sbjct: 304 QSVDTAQAFSSLRVSDSSGKEWVPDSAATAHVTSSTNNLQAASPYNGSDTVLVGDGAYLP 363
Query: 332 VIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTG 391
+ G+ + + L LN VL P + K+L+SV K D V FD + D T
Sbjct: 364 ITHVGSTTISSDSGTLPLNEVLVCPDIQKSLLSVSKLCDDYPCGVYFDANKVCIIDINTQ 423
Query: 392 MPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILC 451
+ + S LY L + + + AA S EIWH+RLGH IL L + I
Sbjct: 424 KVVSKGPRSNGLYVLENQEFVAFYSNRQCAA-SEEIWHHRLGHSNSRILQQLKSSKEISF 482
Query: 452 NKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIW-TSPILSSGGHHYYILFLD 510
NK R + C+ CQ+GK KL F+ S S L +H D+W SP++S G YY++F+D
Sbjct: 483 NKSRMSPVCEPCQMGKSSKLQFFSSNSRELDLLGRIHCDLWGPSPVVSKQGFKYYVVFVD 542
Query: 511 DFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNG 570
D++ + W +PL KS ++F+ F N ++ QF IK FQ D G E+ ++ + G
Sbjct: 543 DYSRYSWFYPLKAKSDFFAVFVAFQNLVENQFNTKIKVFQSDGGGEFTSNLMKKHLTDCG 602
Query: 571 MIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKK 630
+ R SCP+T QNG ERK R + +++ H+ P FW A A++L N+LP+
Sbjct: 603 IQHRISCPYTPQQNGIAERKHRHFVELGLSMMFHSHTPLQFWVEAFFTASFLSNMLPSPS 662
Query: 631 LALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKC 690
L +P L ++ P+Y+ L+VFG C+P + +K + RS CVFLGY S ++GY+C
Sbjct: 663 LGNVSPLEALLKQKPNYAMLRVFGTACYPCLRPLGEHKFEPRSLQCVFLGYNSQYKGYRC 722
Query: 691 FELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFLDTSDTPFPYHLFQHTSNLPTNEP 750
+ ++ ISRHVIFDE TFPF Y FL +Q S++P +
Sbjct: 723 LYPPTGRVYISRHVIFDEETFPFKQK-------YQFLVPQYESSLLSAWQ--SSIPQADQ 773
Query: 751 NSHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQIQTSPQL------------------- 791
+ Q L P SI T Q T P I T L
Sbjct: 774 SLIPQAEEGKIESLAKPPSIQKNTIQDTTT-QPAILTEGVLNEEEEEDSFEETETESLNE 832
Query: 792 -TITPNTASPHQIPPPNPLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTN 850
T T N + ++ + P + MTTR++ GI K L TS + P +
Sbjct: 833 ETHTQNDEA--EVTVEEEVQQEPENTHPMTTRSKAGIHKSNTRYALLTSKFSVEEPKSID 890
Query: 851 PINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKA 910
AL W A+ DE + TW LV + NI+ W+F+ K K DGS ++ KA
Sbjct: 891 --EALNHPGWNNAVNDEMRTIHMLHTWSLVQPTEDMNILGCRWVFKTKLKPDGSVDKLKA 948
Query: 911 RLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETV 970
RLV G +Q+ G+D ETFSPVV+ ATIR VL +A +K W + QLDV NAFLHG L E V
Sbjct: 949 RLVAKGFHQEEGLDYLETFSPVVRTATIRLVLDVATAKGWNIKQLDVSNAFLHGELKEPV 1008
Query: 971 YMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYH 1030
YM QPPGF D + P YVC L K+LYGLKQAPRAW+ ++Y+ GFS S D SLF YH
Sbjct: 1009 YMLQPPGFVDQEKPSYVCRLTKALYGLKQAPRAWFDTISNYLLDFGFSCSKSDPSLFTYH 1068
Query: 1031 SGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISV-------- 1082
T +LLYVDDI+LT S L Q ++ LN F+MKDLG SYFLG+ +
Sbjct: 1069 KNGKTLVLLLYVDDILLTGSDHNLLQELLMSLNKRFSMKDLGAPSYFLGVEIESSPEGLF 1128
Query: 1083 ---TRHSDDT--KAKLSGTSGNP--------------YHDPSEYRSLAGALQYLTFTRPD 1123
T ++ D +A +S + P + +P+ +RSLAG LQYLT TRPD
Sbjct: 1129 LHQTAYAKDILHQAAMSNCNSMPTPLPQHIENLNSDLFPEPTYFRSLAGKLQYLTITRPD 1188
Query: 1124 ISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCP 1183
I +AV +C MH P T LKRI+RY+KGT GLH+ + L Y+D+DW GC
Sbjct: 1189 IQFAVNFICQRMHSPTTADFGLLKRILRYVKGTIHLGLHIKKNQNLSLVAYSDSDWAGCK 1248
Query: 1184 DTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCP 1243
+TR+ST+G+C LG NL+SWSAKRQ T+S+SS EAEYR + V E WL LL ++
Sbjct: 1249 ETRRSTTGFCTLLGCNLISWSAKRQETVSKSSTEAEYRALTAVAQELTWLSFLLRDIGVT 1308
Query: 1244 VTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADI 1303
T TLV CDN+SAVYLS NP H R+KH + D H++RE+VA G V H+ + Q+ADI
Sbjct: 1309 QTHPTLVKCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLVETKHISATLQLADI 1368
Query: 1304 FTKGLPLQLFDDFRDSLHIRQPPVST 1329
FTK LP + F D R L + +PP ++
Sbjct: 1369 FTKPLPRRAFIDLRIKLGVAEPPTTS 1394
>gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis thaliana]
gi|25301689|pir||C96578 hypothetical protein T18A20.5
[imported] - Arabidopsis thaliana
Length = 1522
Score = 741 bits (1914), Expect = 0.0
Identities = 467/1388 (33%), Positives = 693/1388 (49%), Gaps = 168/1388 (12%)
Query: 38 FDNKNSRALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGL 97
F+ +S L+ Q + ++ +T + + +K + DQLA+VG+PV + + ++GL
Sbjct: 114 FNRVSSSRLFELQRRLQTLEKKDNTMEVFLKDLKHICDQLASVGSPVPEKMKIFSALNGL 173
Query: 98 SEAYDTVGSQIRHSDTLPPFYKARSMVVLEETARAKRTAVTTANSTFLAAQEDNNSGNSP 157
Y+ + + I +S P + L+E A R S + +
Sbjct: 174 GREYEPIKTTIENSVDSNP------SLSLDEVASKLRGYDDRLQSYVTEPTISPHVAFNV 227
Query: 158 SHRPNRNNNSNNGSRGGRGGSGNNHGGRGRGRGGGRGGRSHNYQQGSWQQPQAPQHQWAY 217
+H + ++NN G G ++ G G+ RG H QQ S
Sbjct: 228 THSDSGYYHNNNR------GKGRSNSGSGKSSFSTRGRGFH--QQIS------------- 266
Query: 218 PPYQYPSWNAPWQPWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAAT------- 270
PT+G+ QAG G Q A
Sbjct: 267 ----------------------PTSGS---------QAGNSGLVCQICGKAGHHALKCWH 295
Query: 271 --PSSYAPTDIQAAMHSLSLAPPDE----QWYMDTGATSHMTANGGNLTSYSNI--SNNI 322
+SY D+ A+ ++ + + +W D+ A++H+T N L S++I
Sbjct: 296 RFDNSYQHEDLPMALATMRITDVTDHHGHEWIPDSAASAHVTNNRHVLQQSQPYHGSDSI 355
Query: 323 TVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFG 382
V G+ +P+ G+ + + + L VL P ++K+L+SV K T D SVEFD
Sbjct: 356 MVADGNFLPITHTGSGSIASSSGKIPLKEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADS 415
Query: 383 FSVKDFQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNS 442
+ D T L+ + LY L P + + S+E+WH RLGH +L+
Sbjct: 416 VRINDKATKKLLVMGRNRDGLYSLE-EPKLQVLYSTRQNSASSEVWHRRLGHANAEVLHQ 474
Query: 443 LHRNNSILCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIW-TSPILSSGG 501
L + SI+ C++C LGK +LPF S + P + +H D+W SP S G
Sbjct: 475 LASSKSIIIINKVVKTVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSPTSSVQG 534
Query: 502 HHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSH 561
YY++F+D ++ F W +PL KS S F+ F ++ Q IK FQCD G E+ +S
Sbjct: 535 FRYYVVFIDHYSRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFISSQ 594
Query: 562 FHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATY 621
F + + +G+ SCP+T QNG ERK R I + +++ + LP +W + A +
Sbjct: 595 FLKHLQDHGIQQNMSCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTANF 654
Query: 622 LLNILPTKKLAL-QTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLG 680
++N+LPT L ++P LY K+P YS L+VFGC C+P + K RS CVFLG
Sbjct: 655 VINLLPTSSLDNNESPYQKLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVFLG 714
Query: 681 YPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFLDTSD-TPFPYHLF 739
Y ++GY+C + +I ISRHV+FDENT PF S Y+ L D TP F
Sbjct: 715 YNEKYKGYRCLYPPTGRIYISRHVVFDENTHPFE-------SIYSHLHPQDKTPLLEAWF 767
Query: 740 QHTSNLPTNEPNSHDQPPTTTATPLTT-----PYSINTTTHQPTVAPSPQ--------IQ 786
+ ++ +P+ P ++ P TT P S+ T P + +
Sbjct: 768 KSFHHVTPTQPDQSRYPVSSIPQPETTDLSAAPASVAAETAGPNASDDTSQDNETISVVS 827
Query: 787 TSPQLTITPNTAS---PHQIPP-----PNPLLANPPLSPQ-------------------- 818
SP+ T ++AS + P P+P ++P SPQ
Sbjct: 828 GSPERTTGLDSASIGDSYHSPTADSSHPSPARSSPASSPQGSPIQMAPAQQVQAPVTNEH 887
Query: 819 -MTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYDALIDNKTW 877
M TR + GI KP + L T + P P AL+ W AM++E + +TW
Sbjct: 888 AMVTRGKEGISKPNKRYVLLTHKVS--IPEPKTVTEALKHPGWNNAMQEEMGNCKETETW 945
Query: 878 DLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPAT 937
LVP N N++ S+W+FR K ADGS ++ KARLV G Q+ G+D ET+SPVV+ T
Sbjct: 946 TLVPYSPNMNVLGSMWVFRTKLHADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPT 1005
Query: 938 IRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGL 997
+R +L +A W L Q+DVKNAFLHG+L ETVYM QP GF D PD+VCLL KSLYGL
Sbjct: 1006 VRLILHVATVLKWELKQMDVKNAFLHGDLTETVYMRQPAGFVDKSKPDHVCLLHKSLYGL 1065
Query: 998 KQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQS 1057
KQ+PRAW+ RF++++ GF S+ D SLF+Y S +D +LLYVDD+++T ++
Sbjct: 1066 KQSPRAWFDRFSNFLLEFGFICSLFDPSLFVYSSNNDVILLLLYVDDMVITGNNSQSLTH 1125
Query: 1058 IMSKLNSEFAMKDLGPLSYFLGISV-----------TRHSDDTKAKLSGTSGNP------ 1100
+++ LN EF MKD+G + YFLGI + ++++D S + +P
Sbjct: 1126 LLAALNKEFRMKDMGQVHYFLGIQIQTYDGGLFMSQQKYAEDLLITASMANCSPMPTPLP 1185
Query: 1101 ------------YHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKR 1148
+ DP+ +RSLAG LQYLT TRPDI +AV VC MH P LKR
Sbjct: 1186 LQLDRVSNQDEVFSDPTYFRSLAGKLQYLTLTRPDIQFAVNFVCQKMHQPSVSDFNLLKR 1245
Query: 1149 IIRYIKGTSTHGLH----------LYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGD 1198
I+RYIKGT + G+ Y S D L+ Y+D+D+ C +TR+S GYC ++G
Sbjct: 1246 ILRYIKGTVSMGIQYNSNSSSVVSAYESDYD-LSAYSDSDYANCKETRRSVGGYCTFMGQ 1304
Query: 1199 NLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAV 1258
N++SWS+K+QPT+SRSS EAEYR ++ SE W+ ++L E+ + ++CDN+SAV
Sbjct: 1305 NIISWSSKKQPTVSRSSTEAEYRSLSETASEIKWMSSILREIGVSLPDTPELFCDNLSAV 1364
Query: 1259 YLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDDFRD 1318
YL+ NP H RTKH ++D H++RE+VA + V H+P Q+ADIFTK LP + F R
Sbjct: 1365 YLTANPAFHARTKHFDVDHHYIRERVALKTLVVKHIPGHLQLADIFTKSLPFEAFTRLRF 1424
Query: 1319 SLHIRQPP 1326
L + PP
Sbjct: 1425 KLGVDFPP 1432
>gb|AAC02672.1| polyprotein [Arabidopsis arenosa] gi|7522104|pir||T31353 polyprotein
- Arabidopsis arenosa Evelknievel retrotransposon
(fragment)
Length = 1390
Score = 736 bits (1901), Expect = 0.0
Identities = 462/1297 (35%), Positives = 653/1297 (49%), Gaps = 147/1297 (11%)
Query: 65 SYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAYDTVGSQIRHSDTLPPFYKARSMV 124
+Y Q + D LA +G E + ++ GL E Y TV QI + P + +
Sbjct: 151 TYFQGFTTRFDHLALLGKAPEREEQIELILGGLPEDYKTVVDQIESRENPPALTEVLEKL 210
Query: 125 VLEETARAKRTAVTTANSTFLAAQEDNNSGNSPSHRPNRNNNSNNGSRGGRGGSGNNHGG 184
+ E A + T++ + N+ ++R N NNN++
Sbjct: 211 INHEVKLAAKAEATSSVPI---------TANAVNYRGNNNNNNS---------------- 245
Query: 185 RGRGRGGGRGGRSHNYQQGSWQQPQAPQHQWAYPPYQYPSWNAPWQPWATPPCPYPTTGN 244
R GR RG S WQ Q+ ++ Y P Y C +
Sbjct: 246 RSNGRNNSRGNTS-------WQNNQSTTNRQQYTPRPYQG-----------KCQICSVHG 287
Query: 245 WQRPVVPNRQAGILGAKPQQAHVAATPSSYAPTDIQAAMHSLSLAPPDE-QWYMDTGATS 303
P Q Q+ + SSYAP +A M +S P + W +D+GAT
Sbjct: 288 HSARRCPQLQQHAGSYASNQS----SSSSYAPWQPRANM--VSATPYNSGNWLLDSGATH 341
Query: 304 HMTANGGNLTSYS--NISNNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHAPKLIKN 361
H+T++ NL + N +T+ G +P+ G+AL+ P L L +VL+ P + KN
Sbjct: 342 HLTSDLNNLALHQPYNGGEEVTIADGSGLPISHSGSALLPTPTRSLDLKDVLYVPDIQKN 401
Query: 362 LVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFA 421
L+SV + N VSVEF P F VKD TG L++ + +LY P S S FA
Sbjct: 402 LISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGKTKNELYEW---PVNSSIATSMFA 458
Query: 422 ALSNEI----WHNRLGHPGVSILNSLHRNNSI-LCNKFRNNFFCQSCQLGKQIKLPFYES 476
+ + + WH RLGHP + IL +L S+ + + +N C C + K KLPFY +
Sbjct: 459 SPTPKTDLPSWHARLGHPSLPILKTLISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSN 518
Query: 477 LSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCN 536
++ P + +++D+WTSPI S + YY++ +D +T + W +PL KSQ F+ F
Sbjct: 519 TIASSHPLEYLYTDVWTSPITSIDNYKYYLVIVDHYTRYTWLYPLRQKSQVRETFITFTA 578
Query: 537 HIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINN 596
++ +F+ I DNG E+ F +G+ + PHT NG ERK R I
Sbjct: 579 LVENKFKSKIGTLYSDNGGEF--IALRSFLASHGISHMTTPPHTPELNGISERKHRHIVE 636
Query: 597 IIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCL 656
TLL+ AS+ +W +A A YL+N + T L ++P L+ + P+Y L+VFGCL
Sbjct: 637 TGLTLLSTASMSKEYWSYAFTTAVYLINRMLTPVLGNESPYMKLFGQPPNYLKLRVFGCL 696
Query: 657 CFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNS 716
CFP + T +KL RS PCV LGY + Y C + ++ ++ SRHV F E+ FPFS +
Sbjct: 697 CFPWLRPYTAHKLDNRSMPCVLLGYSLSQSAYLCLDRATGRVYTSRHVQFAESIFPFSTT 756
Query: 717 N---IPESSCYNFLDTSDTPFPYHLFQHTSNLPTNEPNS-------------------HD 754
+ P S DT P L + + P + P+
Sbjct: 757 SPSVTPPSDPPLSQDTRPISVPI-LARPLTTAPPSSPSCSAPHRSPSQPGILSPSAPFQP 815
Query: 755 QPPTTTATPLTTPYSINTTTH------------QPTVAPSPQIQ-------TSPQ----- 790
PP++ +P+T+P S++ +H P V+P PQ + TSPQ
Sbjct: 816 SPPSSPTSPITSP-SLSEESHVGHNQETGPTGSSPPVSPQPQSEQSTSPRSTSPQPNSPH 874
Query: 791 -----LTITPN-TASPHQIPPPNPLLANPPLSPQMTTRAQHGIFKPR-QLLNLHTSSSNQ 843
+ITP T SP PPPNP PP+ M TR+++ I KP + NL T +
Sbjct: 875 TQHSPRSITPALTPSPSPSPPPNPN-PPPPIQHTMRTRSKNNIVKPNPKFANLATKPTPL 933
Query: 844 ISPLPTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADG 903
+P AL D NW+ AM DE +A N T+DLVP N N+I W+F K +G
Sbjct: 934 KPIIPKTVAEALLDPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVIGCKWVFTLKYLPNG 993
Query: 904 SFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLH 963
+RYKARLV G +QQ G D ETFSPV+K T+R+VL +A+SK W + Q+DV NAFL
Sbjct: 994 VLDRYKARLVAKGFHQQYGHDFKETFSPVIKSTTVRSVLHVAVSKGWSIRQIDVNNAFLQ 1053
Query: 964 GNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCD 1023
G L++ VY+ QPPGF D +P +VC L K+LYGLKQAPRAWYQ Y+ T GF +S+ D
Sbjct: 1054 GTLSDEVYVMQPPGFVDKDNPHHVCRLHKALYGLKQAPRAWYQELRSYLLTQGFVNSIAD 1113
Query: 1024 HSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVT 1083
SLF Y+L+YVDD+++T S + ++ L + F++KDLG +SYFLGI T
Sbjct: 1114 TSLFTLRHKRTILYVLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEAT 1173
Query: 1084 RHSD-----------------------------DTKAKLSGTSGNPYHDPSEYRSLAGAL 1114
R S KLS TSG P PSEYR++ G+L
Sbjct: 1174 RTSKGLHLMQKRYVLDLLEKTNMLAAHPVLTPMSPTPKLSLTSGTPLDKPSEYRAVLGSL 1233
Query: 1115 QYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTY 1174
QYL+FTRPDI+YAV ++ +MH P H A KRI+RY+ GT +HG+ + T KL Y
Sbjct: 1234 QYLSFTRPDIAYAVNRLSQYMHCPTDLHWQAAKRILRYLAGTPSHGIFIRADTPLKLHAY 1293
Query: 1175 TDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLR 1234
+DADW G D ST+ Y +YLG +SWS+K+Q ++RSS EAEYR VAN SE W+
Sbjct: 1294 SDADWAGDTDNYNSTNAYILYLGSTPISWSSKKQNGVARSSTEAEYRAVANATSEIRWVC 1353
Query: 1235 NLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTK 1271
+LL EL ++ +VYCDNV A YLS NP+ R K
Sbjct: 1354 SLLTELGITLSSPPVVYCDNVGATYLSANPVFDSRMK 1390
>gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534632|ref|NP_921618.1| putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1688
Score = 686 bits (1771), Expect = 0.0
Identities = 408/1087 (37%), Positives = 591/1087 (53%), Gaps = 71/1087 (6%)
Query: 281 AAMHSLSLAPP--DEQWYMDTGATSHMTANGGNLTSYSNISNNITVGSGHNIPVIGCGNA 338
A+ S+S P + W +D+GA+ HM+ + LTS + N TV + +
Sbjct: 168 ASCSSISTVTPIASQPWILDSGASFHMSFDDSWLTSCRLVKNGATVHTANGTLCKVTHQG 227
Query: 339 LVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPL---M 395
+ +PQ+ T+ NV PKL NL+SV + T D V FD V+D TG +
Sbjct: 228 SISSPQF--TVPNVSLVPKLSMNLISVGQLT-DTNCFVGFDDTSCFVQDRHTGAVIGTGH 284
Query: 396 RCNSSGDLYPL--ATRPYYPSTTPSTFAALSNEI------WHNRLGHPGVSILNSLHRNN 447
R S LY L + P + TPS ++ + + WH+RLGH S L +L
Sbjct: 285 RQKRSCGLYILDSLSLPSSSTNTPSVYSPMCSTACKSFPQWHHRLGHLCGSRLATLINQG 344
Query: 448 SILCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIW-TSPILSSGGHHYYI 506
+ F C+ C+LGKQ++LP+ S S + PFD+VHSD+W SP S GGH+YY+
Sbjct: 345 VLGSVPVDTTFVCKGCKLGKQVQLPYPSSTSRSSRPFDLVHSDVWGKSPFPSKGGHNYYV 404
Query: 507 LFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFC 566
+F+DD++ + W + + ++SQ SI+ F I TQF I+ F+ D+G EY ++ F +F
Sbjct: 405 IFVDDYSRYTWIYFMKHRSQLISIYQSFAQMIHTQFSSAIRIFRSDSGGEYMSNAFREFL 464
Query: 567 KQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNIL 626
G + + SCP QNG ERK R I RTLL + +P FW A+ A YL+N+
Sbjct: 465 VSQGTLPQLSCPGAHAQNGVAERKHRHIIETARTLLIASFVPAHFWAEAISTAVYLINMQ 524
Query: 627 PTKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHR 686
P+ L ++P +L+ P Y HL+VFGC C+ L+ R KL A+S CVFLGY H+
Sbjct: 525 PSSSLQGRSPGEVLFGSPPRYDHLRVFGCTCYVLLAPRERTKLTAQSVECVFLGYSLEHK 584
Query: 687 GYKCFELSSRKIIISRHVIFDEN-TFPFSNSNIPES--SCYNFLDTSDTPFPYHL----- 738
GY+C++ S+R+I ISR V FDEN F +S++N P S + +FL P P L
Sbjct: 585 GYRCYDPSARRIRISRDVTFDENKPFFYSSTNQPSSPENSISFLYLPPIPSPESLPSSPI 644
Query: 739 FQHTSNLPTNEPNS---HDQPPTTTATPLTTPYSINTTTHQPTVAPSPQIQTSPQLTITP 795
S +P + P+ PP+ + +P++ P S H P + P + ++ L P
Sbjct: 645 TPSPSPIPPSVPSPTYVPPPPPSPSPSPVSPPPS-----HIPASSSPPHVPSTITLDTFP 699
Query: 796 NTAS-----PHQIPPPNPLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPL--P 848
S P++ P P L +P S ++ A + R L + + P
Sbjct: 700 FHYSRRPKIPNESQPSQPTLEDPTCSVDDSSPAPRYNLRARDALRAPNRDDFVVGVVFEP 759
Query: 849 TNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERY 908
+ A+ +WK+AM +E AL TWD+VP PS+A I W+++ K K+DG ERY
Sbjct: 760 STYQEAIVLPHWKLAMSEELAALERTNTWDVVPLPSHAVPITCKWVYKVKTKSDGQVERY 819
Query: 909 KARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNE 968
KARLV G Q G D ETF+PV T+RT++++A ++SW + Q+DVKNAFLHG+L+E
Sbjct: 820 KARLVARGFQQAHGRDYDETFAPVAHMTTVRTLIAVAATRSWTISQMDVKNAFLHGDLHE 879
Query: 969 TVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFI 1028
VYM+ PPG P P +V L+++LYGLKQAPRAW+ RF+ V GFS S D +LFI
Sbjct: 880 EVYMHPPPGVEAP--PGHVFRLRRALYGLKQAPRAWFARFSSVVLAAGFSPSDHDPALFI 937
Query: 1029 YHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVT----- 1083
+ S +LLYVDD+++T + KL+ +F M DLGPLSYFLGI VT
Sbjct: 938 HTSSRGRTLLLLYVDDMLITGDDLEYIAFVKGKLSEQFMMSDLGPLSYFLGIEVTSTVDG 997
Query: 1084 ------RHSDDTKA------------------KLSGTSGNPYHDPSEYRSLAGALQYLTF 1119
R+ +D A +L T G P DPS YR L G+L YLT
Sbjct: 998 YYLSQHRYIEDLLAQSGLTDSRTTTTPMELHVRLRSTDGTPLDDPSRYRHLVGSLVYLTV 1057
Query: 1120 TRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADW 1179
TRPDI+YAV + F+ P + H L R++RY++GT+T L S+ +L ++D+ W
Sbjct: 1058 TRPDIAYAVHILSQFVSAPISVHYGHLLRVLRYLRGTTTQCLFYAASSPLQLRAFSDSTW 1117
Query: 1180 GGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLE 1239
P R+S +GYC++LG +L++W +K+Q +SRSS EAE R +A SE WLR LL +
Sbjct: 1118 ASDPIDRRSVTGYCIFLGTSLLTWKSKKQTAVSRSSTEAELRALATTTSEIVWLRWLLAD 1177
Query: 1240 LQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQ 1299
T + CDN A+ ++ +PI+H+ TKHI +D F R + + + +VPS Q
Sbjct: 1178 FGVSCDVPTPLLCDNTGAIQIANDPIKHELTKHIGVDASFTRSHCQQSTIALHYVPSELQ 1237
Query: 1300 IADIFTK 1306
+AD FTK
Sbjct: 1238 VADFFTK 1244
>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
Length = 1382
Score = 624 bits (1610), Expect = e-177
Identities = 402/1164 (34%), Positives = 585/1164 (49%), Gaps = 97/1164 (8%)
Query: 201 QQGSW--QQPQAPQHQWAYPPYQYPSWNAPWQPWATPPCPYPTTGNWQRP---VVPNRQA 255
Q+G W Q P+ Q A+ NA P P P+ T P PN A
Sbjct: 250 QKGHWKAQCPKLRQQNQAWKSGSQSQSNAHRSPQGYKP-PHHNTAAVASPGSITDPNTLA 308
Query: 256 GILGAKPQQAHVAATPSSYAPTDIQAAMHSLSLAPPDEQWYMDTGATSHMTANGGNLTSY 315
+ Q ++ P + + + I HS S E W +D+GA+ HM+ + + TS
Sbjct: 309 -----EQFQKFLSLQPQAMSASSIGQLPHSSSGISHSE-WVLDSGASHHMSPDSSSFTSV 362
Query: 316 SNISN-NITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEV 374
S +S+ + G +P+ G G+ + + L+L NV PKL NL S+ + +
Sbjct: 363 SPLSSIPVMTADGTPMPLAGVGSVVTLH----LSLPNVYLIPKLKLNLASIGQICDSGDY 418
Query: 375 SVEFDPFGFSVKDFQTGMPLMRCNSSGDLY---PLATRPYYPSTTPS------TFAALSN 425
V F V+D Q+ + LY L +TT + ++ S
Sbjct: 419 LVMFSGSFCCVQDLQSQKLIGTGRRENGLYILDELKVPVVVAATTVDLSFFRLSLSSSSF 478
Query: 426 EIWHNRLGHPGVSILNSLHRNNSILCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFD 485
+WH+RLGH S L L ++ K + C C+L K LPF S S + PFD
Sbjct: 479 YLWHSRLGHVSSSRLRFLASTGALGNLKTCDISDCSGCKLAKFSALPFNRSTSVSSSPFD 538
Query: 486 IVHSDIW-TSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFER 544
++HSD+W SP+ + GG YY+ F+DD T + W + + ++S+ I+ F IKTQ
Sbjct: 539 LIHSDVWGPSPVSTKGGSRYYVSFIDDHTRYCWVYLMKHRSEFFEIYAAFRALIKTQHSA 598
Query: 545 DIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAH 604
IKCF+CD G EY ++ F Q +G I + SC T QNG ERK R I R+LL
Sbjct: 599 VIKCFRCDLGGEYTSNKFCQMLALDGTIHQTSCTDTPEQNGVAERKHRHIVETARSLLLS 658
Query: 605 ASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPST 664
A + FW A+ A L+N +P+ + +P LY P YS +VFGC F L P
Sbjct: 659 AFVLSEFWGEAVLTAVSLINTIPSSHSSGLSPFEKLYGHVPDYSSFRVFGCTYFVLHPHV 718
Query: 665 TRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNSNIPESSCY 724
RNKL +RS CVFLGY +GY+CF+ ++K+ +S HV+F E+
Sbjct: 719 ERNKLSSRSAICVFLGYGEGKKGYRCFDPITQKLYVSHHVVFLEH--------------- 763
Query: 725 NFLDTSDTPFPYHLFQHTSNLPTNEPNSHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQ 784
P+ T++ T H P + + T+PY + TH
Sbjct: 764 ---------IPFFSIPSTTHSLTKSDLIHIDPFSEDSGNDTSPYVRSICTHNSA------ 808
Query: 785 IQTSPQLTITPNTASPHQIPPPNPLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQI 844
T L+ TP + P + + +PP P+ + R + P + ++SS
Sbjct: 809 -GTGTLLSGTPEASFSSTAPQASSEIVDPP--PRQSIRIRKSTKLPDFAYSCYSSSFTSF 865
Query: 845 SPL------PTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHK 898
P++ A+ D + AM +E AL TWDLVP P +++ W+++ K
Sbjct: 866 LAYIHCLFEPSSYKEAILDPLGQQAMDEELSALHKTDTWDLVPLPPGKSVVGCRWVYKIK 925
Query: 899 KKADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVK 958
+DGS ERYKARLV G +QQ G+D ETF+P+ K TIRT++++A + W + QLDVK
Sbjct: 926 TNSDGSIERYKARLVAKGYSQQYGMDYEETFAPIAKMTTIRTLIAVASIRQWHISQLDVK 985
Query: 959 NAFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFS 1018
NAFL+G+L E VYM PPG YVC LKK+LYGLKQAPRAW+++F+ +++LGF
Sbjct: 986 NAFLNGDLQEEVYMAPPPGISHDS--GYVCKLKKALYGLKQAPRAWFEKFSIVISSLGFV 1043
Query: 1019 HSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFL 1078
S D +LFI + + LYVDD+I+T + ++L F MKDLG L YFL
Sbjct: 1044 SSSHDSALFIKCTDAGRIILSLYVDDMIITGDDIDGISVLKTELARRFEMKDLGYLRYFL 1103
Query: 1079 GISVT---------------------RHSD--------DTKAKLSGTSGNPYHDPSEYRS 1109
GI V R +D + A+ S + G P DP+ YR+
Sbjct: 1104 GIEVAYSPRGYLLSQSKYVANILERARLTDNKTVDTPIEVNARYSSSDGLPLIDPTLYRT 1163
Query: 1110 LAGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVD 1169
+ G+L YLT T PDI+YAV V F+ P T H A+ RI+RY++GT L L ++
Sbjct: 1164 IVGSLVYLTITHPDIAYAVHVVSQFVASPTTIHWAAVLRILRYLRGTVFQSLLLSSTSSL 1223
Query: 1170 KLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSE 1229
+L Y+DAD G P RKS +G+C++LGD+L+SW +K+Q +S+SS EAEY +A+ E
Sbjct: 1224 ELRAYSDADHGSDPTDRKSVTGFCIFLGDSLISWKSKKQSIVSQSSTEAEYCAMASTTKE 1283
Query: 1230 SCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQV 1289
W R LL ++ + T +YCDN S++ ++ N + H+RTKHIE+D H R + G +
Sbjct: 1284 IVWSRWLLADMGISFSHLTPMYCDNQSSIQIAHNSVFHERTKHIEIDCHLTRHHLKHGTI 1343
Query: 1290 RVMHVPSRYQIADIFTKGLPLQLF 1313
+ VPS QIAD FTK + F
Sbjct: 1344 ALPFVPSSLQIADFFTKAHSISRF 1367
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,516,043,403
Number of Sequences: 2540612
Number of extensions: 120596425
Number of successful extensions: 947488
Number of sequences better than 10.0: 6743
Number of HSP's better than 10.0 without gapping: 3644
Number of HSP's successfully gapped in prelim test: 3439
Number of HSP's that attempted gapping in prelim test: 739759
Number of HSP's gapped (non-prelim): 77188
length of query: 1333
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1193
effective length of database: 507,674,714
effective search space: 605655933802
effective search space used: 605655933802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)
Medicago: description of AC146720.2