BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146719.4 - phase: 0 /pseudo
(471 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV43991.1| putative polyprotein [Oryza sativa (japonica cult... 152 2e-35
emb|CAE02186.2| OSJNBa0080E14.17 [Oryza sativa (japonica cultiva... 152 3e-35
gb|AAP53591.1| putative polyprotein [Oryza sativa (japonica cult... 151 5e-35
ref|XP_471160.1| OSJNBb0080H08.11 [Oryza sativa (japonica cultiv... 150 8e-35
emb|CAE05227.2| OSJNBa0011K22.9 [Oryza sativa (japonica cultivar... 150 8e-35
gb|AAT47449.1| putative polyprotein [Oryza sativa (japonica cult... 150 8e-35
gb|AAP52849.1| putative retroelement [Oryza sativa (japonica cul... 150 1e-34
gb|AAT73646.1| putative polyprotein [Oryza sativa (japonica cult... 150 1e-34
gb|AAP52382.1| putative polyprotein [Oryza sativa (japonica cult... 149 1e-34
gb|AAP52176.1| putative polyprotein [Oryza sativa (japonica cult... 149 2e-34
ref|XP_475027.1| OSJNBb0093G06.8 [Oryza sativa (japonica cultiva... 149 2e-34
ref|NP_918193.1| putative retroelement polyprotein [Oryza sativa... 149 2e-34
gb|AAV31366.1| putative polyprotein [Oryza sativa (japonica cult... 149 2e-34
gb|AAT73655.1| putative polyprotein [Oryza sativa (japonica cult... 149 2e-34
ref|XP_475568.1| putative polyprotein [Oryza sativa (japonica cu... 148 3e-34
gb|AAD27547.1| polyprotein [Oryza sativa subsp. indica] 148 3e-34
gb|AAX94880.1| retrotransposon protein, putative, Ty3-gypsy sub-... 148 3e-34
gb|AAS90688.2| putative polyprotein [Oryza sativa (japonica cult... 148 3e-34
gb|AAP52927.1| putative retroelement [Oryza sativa (japonica cul... 148 4e-34
gb|AAP52881.1| putative retroelement [Oryza sativa (japonica cul... 148 4e-34
>gb|AAV43991.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1499
Score = 152 bits (385), Expect = 2e-35
Identities = 121/453 (26%), Positives = 193/453 (41%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR HPPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 95 LAEFLRIHPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 153
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F FL + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 154 HFQATQPEGQPITWARFTAAFLRTHVPAGVMALKKREFRELKQGNRSVMEYLYEFNNLAR 213
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELVSS---CRIYEEDTKAHYK 209
+ P E E K KF G+ ++ + F LV + ++ ++H
Sbjct: 214 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDSPDFQRLVDKSIRLEVKHKELESHKH 271
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGE-KGHKSNVCD 268
++ R + ++ Y+ P G + + + R AP + + + +S
Sbjct: 272 RLANFRHQQGANQRIHYTNPYPGGSSSQQQQHQQQPRSAPRPQFVVRVPQPQQQQSQQGT 331
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R + Q G D + +C+NC E GH + +C +P++ + GGK
Sbjct: 332 RAPRPPTPAVQPGQGRRDVQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRPNNGGKDV 391
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 392 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 451
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 452 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 510
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ +L Q+
Sbjct: 511 CARRTVTLYRGPEQPVVFFAPPTSVSSSELHQI 543
>emb|CAE02186.2| OSJNBa0080E14.17 [Oryza sativa (japonica cultivar-group)]
gi|32487701|emb|CAE05378.1| OSJNBa0022F16.2 [Oryza
sativa (japonica cultivar-group)]
gi|50930007|ref|XP_474531.1| OSJNBa0080E14.17 [Oryza
sativa (japonica cultivar-group)]
Length = 1494
Score = 152 bits (383), Expect = 3e-35
Identities = 122/454 (26%), Positives = 196/454 (42%), Gaps = 24/454 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 357 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 415
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 416 HFQATQPEGQPITWARFTAAFRRTHVPAGVMALKKREFRELKQGNRSVMEYLHEFNNLAR 475
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF G+ ++ + F LV S R+ ++ ++H +
Sbjct: 476 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 533
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + + + N
Sbjct: 534 RLANFRNQQDANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 593
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R + Q G D + +C+NC E GH + +C +P++ + GGK
Sbjct: 594 RAPRPPTPTVQPGQGRRDAQGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 653
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 654 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 713
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 714 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 772
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQVV 466
C +TV E+ F T+ + +L Q+V
Sbjct: 773 CARRTVTLYRGPEQPVVFFAPPTSVRSSELHQIV 806
>gb|AAP53591.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534004|ref|NP_921304.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20503033|gb|AAM22721.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1784
Score = 151 bits (381), Expect = 5e-35
Identities = 122/453 (26%), Positives = 195/453 (42%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 397 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 455
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SVTEY +F LA+
Sbjct: 456 HFQATQPEGQPITWARFTAAFRRTHVPAGVMALKKREFRELKQGNRSVTEYLHEFNNLAR 515
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF G+ ++ + F LV S R+ ++ ++H +
Sbjct: 516 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 573
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + + + N
Sbjct: 574 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 633
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R + Q G D + +C+NC E GH + +C +P++ + GGK
Sbjct: 634 RAPRPPTPTVQPGQGRRDAQGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 693
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 694 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 753
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 754 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDSKNLDVILGMNWLAQFQGVVD 812
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ +L Q+
Sbjct: 813 CARRTVTLYRGPEQPVVFFAPPTSVSSSELHQI 845
>ref|XP_471160.1| OSJNBb0080H08.11 [Oryza sativa (japonica cultivar-group)]
gi|38344419|emb|CAE02385.2| OSJNBb0080H08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1809
Score = 150 bits (379), Expect = 8e-35
Identities = 121/453 (26%), Positives = 196/453 (42%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 397 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 455
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 456 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 515
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRIYE--EDTKAHYK 209
+ P E E K KF G+ ++ + F LV S R+ + ++ ++H +
Sbjct: 516 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEDKHKELESHKR 573
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGE-KGHKSNVCD 268
++ R + ++ Y+ P G ++++ + R AP + + + +S
Sbjct: 574 RLANFRNQQGANQRVRYTNPYPGGSSSQQEQQQQQPRSAPRPQFVVRVPQPQQQQSQQGT 633
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQ--------PKKVRTGGK-- 318
R + Q G + D + +C+NC E GH + +C + P + GGK
Sbjct: 634 RAPRPPMPTVQPGQSRRDAQGPQRLCFNCFEPGHFADKCPKLRRQQGQAPPRSNNGGKDV 693
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 694 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 753
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 754 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKSLDVILGMNWLAQFQGVVD 812
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ +L Q+
Sbjct: 813 CARRTVTLYPGPEQPVVFFAPPTSVSSSELHQI 845
>emb|CAE05227.2| OSJNBa0011K22.9 [Oryza sativa (japonica cultivar-group)]
gi|50923119|ref|XP_471920.1| OSJNBa0011K22.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1699
Score = 150 bits (379), Expect = 8e-35
Identities = 118/452 (26%), Positives = 196/452 (43%), Gaps = 24/452 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 404 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 462
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 463 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 522
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF G+ ++ + F LV S R+ ++ ++H +
Sbjct: 523 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 580
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSNVCDR 269
++ R + ++ Y+ P G +++P+ P ++ ++ ++ R
Sbjct: 581 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQPRSAPRPQFVVRVPQPQQ-QQNQQGTR 639
Query: 270 DEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------------T 315
+ Q G D + +C+NC E GH + +C +P++ + T
Sbjct: 640 VPRPPTPAVQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDVT 699
Query: 316 GGKVFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMNG 375
G+V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 700 RGRVNHVTAEDVLTTPDVIVGTFLIHSVPATTLFDSGASHSFISVPFVGRNQLGVERLRN 759
Query: 376 EMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHINC 435
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++C
Sbjct: 760 PLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDC 818
Query: 436 FSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
+TV E+ F T+ + +L Q+
Sbjct: 819 ARRTVTLYRGPEQPVVFFAPPTSVRSSELHQI 850
>gb|AAT47449.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1943
Score = 150 bits (379), Expect = 8e-35
Identities = 122/453 (26%), Positives = 195/453 (42%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 365 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 423
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 424 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 483
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF G+ ++ + F LV S R+ ++ ++H +
Sbjct: 484 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 541
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + ++ + N
Sbjct: 542 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRPAPRPQFVVRVPQQQQQQNQQGT 601
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R + GQ D +C+NC E GH + +C +P++ + GGK
Sbjct: 602 RAPRPPTPAGQPVQGRRDASGPQRLCFNCFEPGHFADKCPKPRRQKGQAPPRSNNGGKDV 661
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V K L V +
Sbjct: 662 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGKNQLGVERLR 721
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 722 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 780
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ + +L Q+
Sbjct: 781 CARRTVTLYRGPEQPVVFFAPPTSVRSSELHQI 813
>gb|AAP52849.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532520|ref|NP_920562.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|13992687|gb|AAK51581.1| Putative retroelement [Oryza
sativa]
Length = 959
Score = 150 bits (378), Expect = 1e-34
Identities = 121/453 (26%), Positives = 195/453 (42%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 327 LVEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 385
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 386 HFQATQPEGQPITWARFTAAFRRTHVPAGVMALKKREFRELKQGNRSVMEYLHEFNNLAR 445
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF G+ ++ + F LV S R+ +++ ++H +
Sbjct: 446 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKQKELESHKR 503
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGE-KGHKSNVCD 268
++ R + ++ Y+ P G +++ + R AP + + + +S
Sbjct: 504 RLASFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQLQQQQSQQGT 563
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R Q G D + +C+NC E GH + +C +P++ + GGK
Sbjct: 564 RAPCPPTPAAQSGQVRRDVQGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 623
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 624 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 683
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 684 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 742
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ +L Q+
Sbjct: 743 CARRTVTLYRGPEQPVVFFAPPTSVSSSELHQI 775
>gb|AAT73646.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1764
Score = 150 bits (378), Expect = 1e-34
Identities = 122/453 (26%), Positives = 195/453 (42%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 339 LTEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVVFAAHQLQGPASLWW-D 397
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 398 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 457
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF G+ ++ + F LV S R+ ++ ++H +
Sbjct: 458 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 515
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + ++ + N
Sbjct: 516 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRPAPRPQFVVRVPQQQQQQNQQGT 575
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R + GQ D +C+NC E GH + +C +P++ + GGK
Sbjct: 576 RAPRPPTPAGQPVQGRRDASGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRPNNGGKDV 635
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V K L V +
Sbjct: 636 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGKNQLGVERLR 695
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 696 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 754
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ + +L Q+
Sbjct: 755 CARRTVTLYRGPEQPVVFFAPPTSVRSSELHQI 787
>gb|AAP52382.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531586|ref|NP_920095.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19881766|gb|AAM01167.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 892
Score = 149 bits (377), Expect = 1e-34
Identities = 122/453 (26%), Positives = 194/453 (41%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 386 LAEFLRIRPPTFSSSNNPVDALVWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 444
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 445 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 504
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF G+ ++ + F LV S R+ ++ ++H +
Sbjct: 505 YAPEDVREDEE--KQEKFLAGMDPELSVHLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 562
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + + + N
Sbjct: 563 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 622
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R + Q G D + +CYNC E GH + +C +P++ + GGK
Sbjct: 623 RAPRPPTPTVQSGQGRRDAQGPQRLCYNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 682
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 683 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 742
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL +
Sbjct: 743 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVE 801
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ + +L Q+
Sbjct: 802 CARRTVTLYRGPEQPVVFFAPPTSVRSSELHQI 834
>gb|AAP52176.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531174|ref|NP_919889.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20177631|gb|AAM14686.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1859
Score = 149 bits (376), Expect = 2e-34
Identities = 121/453 (26%), Positives = 196/453 (42%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 493 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 551
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F ++ P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 552 HFQATQPEGQPITWARFTAAFRRIHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 611
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF G+ ++ + F LV S R+ ++ ++H +
Sbjct: 612 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 669
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + + + N
Sbjct: 670 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 729
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R + Q G D + +C+NC E GH + +C +P++ + GGK
Sbjct: 730 RAPRPPTPTVQPGQGRRDTQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 789
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 790 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 849
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 850 NPLLITTPG-GVMTAKYFSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 908
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ + +L Q+
Sbjct: 909 CARRTVTLYRGPEQPVVFFAPPTSVRSSELHQI 941
>ref|XP_475027.1| OSJNBb0093G06.8 [Oryza sativa (japonica cultivar-group)]
gi|38347567|emb|CAE05000.2| OSJNBb0093G06.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1770
Score = 149 bits (375), Expect = 2e-34
Identities = 121/453 (26%), Positives = 194/453 (42%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 345 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 403
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 404 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 463
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF G+ ++ + F LV S R+ ++ ++H +
Sbjct: 464 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 521
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + + + N
Sbjct: 522 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 581
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R + Q G D + +C+NC E GH + +C +P++ + GGK
Sbjct: 582 RAPRPPTPTVQPGQGRRDAQGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 641
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 642 IRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 701
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 702 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFSSDLILLDTKNLDVILGMNWLAQFQGVVD 760
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ +L Q+
Sbjct: 761 CARRTVTLYRGPEQPVVFFAPPTSVSSSELHQI 793
>ref|NP_918193.1| putative retroelement polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1796
Score = 149 bits (375), Expect = 2e-34
Identities = 121/453 (26%), Positives = 192/453 (41%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 371 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVVFAAHQLQGPASLWW-D 429
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 430 HFQATQPKGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 489
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELVSSCRIYE---EDTKAHYK 209
+ P E E K KF G+ ++ + F LV E ++ ++H +
Sbjct: 490 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSICLEAKHKELESHKR 547
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + + + N
Sbjct: 548 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRPAPRPQFVVRVPQPQQQQNQQGT 607
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R + Q G D + +C+NC E GH + +C +P++ + GGK
Sbjct: 608 RAPRPPTPTVQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 667
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V K L V +
Sbjct: 668 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGKNQLGVERLR 727
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 728 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 786
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ + +L Q+
Sbjct: 787 CARRTVTLYRGPEQPVVFFAPPTSVRSSELHQI 819
>gb|AAV31366.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1826
Score = 149 bits (375), Expect = 2e-34
Identities = 122/453 (26%), Positives = 194/453 (41%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 424 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVVFAAHQLQGPASLWW-D 482
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 483 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 542
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF GL ++ + F LV S R+ ++ ++H +
Sbjct: 543 YAPEDVREDEE--KQEKFLAGLDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 600
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + + + N
Sbjct: 601 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 660
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R + Q G D + +C+NC E GH + +C +P++ + GGK
Sbjct: 661 RAPRPPTPTVQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 720
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 721 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 780
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 781 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 839
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ +L Q+
Sbjct: 840 CARRTVTLYRGPEQPVVFFAPPTSVSSSELHQI 872
>gb|AAT73655.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1747
Score = 149 bits (375), Expect = 2e-34
Identities = 122/453 (26%), Positives = 194/453 (41%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 345 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVVFAAHQLQGPASLWW-D 403
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 404 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 463
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF GL ++ + F LV S R+ ++ ++H +
Sbjct: 464 YAPEDVREDEE--KQEKFLAGLDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 521
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + + + N
Sbjct: 522 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 581
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R + Q G D + +C+NC E GH + +C +P++ + GGK
Sbjct: 582 RAPRPPTPTVQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 641
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 642 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 701
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 702 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 760
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ +L Q+
Sbjct: 761 CARRTVTLYRGPEQPVVFFAPPTSVSSSELHQI 793
>ref|XP_475568.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1570
Score = 148 bits (374), Expect = 3e-34
Identities = 119/453 (26%), Positives = 195/453 (42%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 145 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLHGPASLWW-D 203
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
++ +G VTW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 204 HFQAMQPEGQPVTWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 263
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P + E K KF G+ ++ + F LV S R+ ++ ++H +
Sbjct: 264 YTPEDVRKDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 321
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + + + N
Sbjct: 322 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 381
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR-------------- 314
R + Q G D +C+NC E GH + +C +P++ +
Sbjct: 382 RAPRPPTPTVQPGQGRRDASGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRPNNGGKDV 441
Query: 315 TGGKVFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
+ G+V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 442 SRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 501
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 502 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 560
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ + +L Q+
Sbjct: 561 CARRTVTLYRGPEQPVVFFAPPTSVRSSELHQI 593
>gb|AAD27547.1| polyprotein [Oryza sativa subsp. indica]
Length = 1521
Score = 148 bits (374), Expect = 3e-34
Identities = 122/451 (27%), Positives = 190/451 (42%), Gaps = 22/451 (4%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL +E+ ++QC++ +KV F TH L A WW +
Sbjct: 92 LPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 151
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ G VTW F R F P+ V +K+ EF + QG+ +VTEY +F LA+
Sbjct: 152 HM-ATRPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLAR 210
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELVSSCRIYEEDTKAHYKVMS 212
+ P AE K KF GL ++ + F LV I +ED + M
Sbjct: 211 YAPEDVRTDAE--KQEKFMAGLDDELTNQLISGDYADFERLVDKA-IRQEDQR---NKMD 264
Query: 213 ERRGKGQ*SRPK-PYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN------ 265
+R Q P+ + P Q+ R+ P F G G +++
Sbjct: 265 RKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPFNSSNFHQGSSGSQNHHGSQPN 324
Query: 266 --VCDRDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR---TGGKVF 320
R + GQ + C+NC E GH + +C +P++ +V
Sbjct: 325 RGAAPRPPMAPAQSGQPAQAKKETGVKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVN 384
Query: 321 ALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMNGEMVVE 380
+ + ++ GT NS + D+GATH FI GL ++ M V
Sbjct: 385 HASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELRTPMRVH 444
Query: 381 TPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHINCFSKTV 440
TP S + S S L+ + F +L+ L +DVI GM+WL I+C ++TV
Sbjct: 445 TPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTV 503
Query: 441 HFSSAEEES--EAKFLTTKQLKQLEQVVCQV 469
++ + E+ ++ KQ L Q+ ++
Sbjct: 504 TLTNEKGETVVHKSLVSPKQGASLNQIEAEI 534
>gb|AAX94880.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1849
Score = 148 bits (374), Expect = 3e-34
Identities = 121/453 (26%), Positives = 195/453 (42%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 424 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 482
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 483 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 542
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF G+ ++ + F LV S R+ ++ ++H +
Sbjct: 543 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 600
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + + + N
Sbjct: 601 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 660
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R + Q G D + +C+NC E GH + +C +P++ + GGK
Sbjct: 661 RAPRPPTPTVQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDV 720
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 721 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 780
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 781 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 839
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ + +L Q+
Sbjct: 840 CARRTVTLYRGPEQPVVFFAPPTSVRSSELHQI 872
>gb|AAS90688.2| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1789
Score = 148 bits (374), Expect = 3e-34
Identities = 119/453 (26%), Positives = 195/453 (42%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 364 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLHGPASLWW-D 422
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
++ +G VTW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 423 HFQAMQPEGQPVTWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 482
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P + E K KF G+ ++ + F LV S R+ ++ ++H +
Sbjct: 483 YTPEDVRKDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 540
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + + + N
Sbjct: 541 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 600
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR-------------- 314
R + Q G D +C+NC E GH + +C +P++ +
Sbjct: 601 RAPRPPTPTVQPGQGRRDASGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRPNNGGKDV 660
Query: 315 TGGKVFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
+ G+V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 661 SRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 720
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 721 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 779
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ + +L Q+
Sbjct: 780 CARRTVTLYRGPEQPVVFFAPPTSVRSSELHQI 812
>gb|AAP52927.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532676|ref|NP_920640.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22725935|gb|AAN04945.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1825
Score = 148 bits (373), Expect = 4e-34
Identities = 119/449 (26%), Positives = 192/449 (42%), Gaps = 22/449 (4%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 400 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLWW-D 458
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 459 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 518
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF G+ ++ + F LV S R+ ++ ++H +
Sbjct: 519 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 576
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGE-KGHKSNVCD 268
++ R + ++ Y+ P G +++ + R AP + + + +
Sbjct: 577 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQGQQGT 636
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR--------TGGK-- 318
R + Q G D + +C+NC E GH + +C +P++ + GGK
Sbjct: 637 RAPRPPTPTVQPGQGRRDAQGQQRLCFNCFEPGHYADKCPKPRRQQGQAPPRSNNGGKDV 696
Query: 319 ----VFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 697 IRGRVNHVTAKDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 756
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 757 NPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 815
Query: 435 CFSKTVHFSSAEEESEAKFLTTKQLKQLE 463
C +TV E+ F+ +K E
Sbjct: 816 CARRTVTLYRGPEQPVVFFVPPTSVKSSE 844
>gb|AAP52881.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532584|ref|NP_920594.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21672037|gb|AAM74399.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1821
Score = 148 bits (373), Expect = 4e-34
Identities = 119/453 (26%), Positives = 194/453 (42%), Gaps = 24/453 (5%)
Query: 33 LETFLRNHPPTFKGRYDPDGAQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVS 92
L FLR PPTF +P A WL V + +QCS+ +KV F H L A WW
Sbjct: 396 LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLGTVQCSDEEKVIFAAHQLQGPASLWW-D 454
Query: 93 LLPILEQDGAAVTWVVFRREFLNMYFPEDVRGKKEIEFLEMKQGDMSVTEYAAKFVELAK 152
+ +G +TW F F + P V K+ EF E+KQG+ SV EY +F LA+
Sbjct: 455 HFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLAR 514
Query: 153 FYPHYTTETAEFSKCIKFENGLRADIKRAIGYEKIRIFSELV-SSCRI--YEEDTKAHYK 209
+ P E E K KF G+ ++ + F LV S R+ ++ ++H +
Sbjct: 515 YAPEDVREDEE--KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKR 572
Query: 210 VMSERRGKGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSN-VCD 268
++ R + ++ Y+ P G +++ + R AP + + + N
Sbjct: 573 RLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQGT 632
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR-------------- 314
R + Q G D + +C+NC E GH + +C +P++ +
Sbjct: 633 RAPRPPTPTVQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGRDV 692
Query: 315 TGGKVFALTGTQTVNEDRLIRGTCFFNSTHLIAIIDTGATHCFIVVDCAYKLGLIVSDMN 374
G+V +T + +I GT +S + D+GA+H FI V + L V +
Sbjct: 693 IRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLR 752
Query: 375 GEMVVETPAKGSVTTSLVCLSCLLSMFGRDFEVDLVCLPLSGVDVIFGMNWLEYNHFHIN 434
+++ TP G +T + + + G F DL+ L +DVI GMNWL ++
Sbjct: 753 NPLLITTPG-GVMTAKYYSPTVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVD 811
Query: 435 CFSKTVHFSSAEEESEAKFL--TTKQLKQLEQV 465
C +TV E+ F T+ + +L Q+
Sbjct: 812 CARRTVTLYRGPEQPVVFFAPPTSVRSSELHQI 844
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.137 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 821,323,713
Number of Sequences: 2540612
Number of extensions: 35924403
Number of successful extensions: 107692
Number of sequences better than 10.0: 4565
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 3303
Number of HSP's that attempted gapping in prelim test: 86437
Number of HSP's gapped (non-prelim): 15858
length of query: 471
length of database: 863,360,394
effective HSP length: 132
effective length of query: 339
effective length of database: 527,999,610
effective search space: 178991867790
effective search space used: 178991867790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)
Medicago: description of AC146719.4