BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146712.3 - phase: 0 /pseudo
(276 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB81142.1| AT4g08050 [Arabidopsis thaliana] gi|5724774|gb|A... 104 2e-21
gb|AAF63128.1| Similar to Athila ORF 1 [Arabidopsis thaliana] 102 1e-20
gb|AAF67369.1| Hypothetical protein T15F17.a [Arabidopsis thaliana] 100 8e-20
emb|CAA57397.1| unnamed protein product [Arabidopsis thaliana] g... 99 1e-19
gb|AAF67381.1| Hypothetical protein T15F17.m [Arabidopsis thaliana] 99 2e-19
emb|CAB81134.1| putative athila transposon protein [Arabidopsis ... 98 3e-19
gb|AAF63125.1| Similar to Athila ORF 1 [Arabidopsis thaliana] gi... 98 3e-19
gb|AAM15284.1| putative Athila retroelement ORF1 protein [Arabid... 97 4e-19
emb|CAB77937.1| putative athila transposon protein [Arabidopsis ... 96 1e-18
gb|AAD19759.1| putative Athila retroelement ORF1 protein [Arabid... 95 2e-18
gb|AAC13587.1| contains similarity to retrotransposon-like prote... 92 1e-17
gb|AAD15357.1| putative Athila retroelement ORF1 protein [Arabid... 92 2e-17
gb|AAB18645.1| unknown [Hordeum vulgare] gi|7489374|pir||T06196 ... 92 2e-17
gb|AAD20430.1| putative Athila retroelement ORF1 protein [Arabid... 91 3e-17
gb|AAM15150.1| putative Athila retroelement ORF1 protein [Arabid... 91 3e-17
gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana] 91 3e-17
gb|AAF67372.1| Hypothetical protein T15F17.d [Arabidopsis thaliana] 90 6e-17
gb|AAD23706.1| putative Athila retroelement ORF1 protein [Arabid... 89 2e-16
gb|AAX92771.1| Transposable element protein, putative [Oryza sat... 88 3e-16
ref|XP_474896.1| OSJNBa0021F22.23 [Oryza sativa (japonica cultiv... 83 7e-15
>emb|CAB81142.1| AT4g08050 [Arabidopsis thaliana] gi|5724774|gb|AAD48078.1| contains
similarity to retrotransposons; may be a pseudogene
[Arabidopsis thaliana] gi|25354718|pir||C85079
hypothetical protein AT4g08050 [imported] - Arabidopsis
thaliana
Length = 1428
Score = 104 bits (260), Expect = 2e-21
Identities = 61/182 (33%), Positives = 99/182 (53%), Gaps = 4/182 (2%)
Query: 21 IVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAV*L 77
I P ++ NNFEIK L++++Q N+F G P EDP H+ F RL K N ++ L
Sbjct: 29 IAPPAIQNNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFDRLCNLTKINGVSEDGFKL 88
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSHGLIKKMGSL 137
LFPFSL D+A W +L SIT+WD ++AFL++F + + L + +G +K G
Sbjct: 89 RLFPFSLGDKAHIWEKNLSHDSITTWDDYKKAFLSKFFSNARTARLRNEIYGFSQKTGES 148
Query: 138 SMKRGRVSRKSLDFVPTMAW-KSGL*STPFNGLSYTTKMSVDAAAGGSLMNKNYTEAYAL 196
+ + + P ++ K+ L ST + G+ +M +D A+ G+ NK+ E + L
Sbjct: 149 FCEAWERFKGYTNQCPHHSFTKASLLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWEL 208
Query: 197 MK 198
++
Sbjct: 209 VE 210
>gb|AAF63128.1| Similar to Athila ORF 1 [Arabidopsis thaliana]
Length = 780
Score = 102 bits (254), Expect = 1e-20
Identities = 64/191 (33%), Positives = 99/191 (51%), Gaps = 4/191 (2%)
Query: 12 PSMEEPQAIIVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN 71
P +A IV P ++ NNFEIK L++++Q N+F G P EDP H+ +F R K N
Sbjct: 20 PRNHHQRAGIVPPLIQNNNFEIKSGLISMIQSNKFHGLPMEDPLDHLDNFDRFCSLTKIN 79
Query: 72 ---QEAV*LHLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSH 128
+++ L LFPFSL D A W +L V S+ +WD ++AFLA+F + + L +
Sbjct: 80 GVSEDSFKLRLFPFSLGDEAHLWEKTLLVDSVDTWDDCKKAFLAKFFSNSRTARLRNEIS 139
Query: 129 GLIKKMG-SLSMKRGRVSRKSLDFVPTMAWKSGL*STPFNGLSYTTKMSVDAAAGGSLMN 187
G +K S + R R S K+ L ST + G +M +D + G+ +N
Sbjct: 140 GFNQKNSESFAEAWERFKRYSTQCPHHGFKKASLLSTLYRGALPKIRMLLDTTSNGNFLN 199
Query: 188 KNYTEAYALMK 198
K+ E + L++
Sbjct: 200 KDVAEGWELVE 210
>gb|AAF67369.1| Hypothetical protein T15F17.a [Arabidopsis thaliana]
Length = 703
Score = 99.8 bits (247), Expect = 8e-20
Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 4/182 (2%)
Query: 21 IVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAV*L 77
IV P V+ NNFEIK L+ +VQ N+F G P EDP H+ F RL K N ++ L
Sbjct: 29 IVPPPVQNNNFEIKSGLIAMVQSNKFHGLPMEDPLDHLDEFDRLCSLTKINGVSEDGFKL 88
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSHGLIKKMGSL 137
LFPFSL D+A W SL GSITSW+ ++AFLA+F + + L G +
Sbjct: 89 RLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNNET 148
Query: 138 SMKRGRVSRKSLDFVPTMAW-KSGL*STPFNGLSYTTKMSVDAAAGGSLMNKNYTEAYAL 196
+ + P + K+ L ST + + +M +D A+ G+ +NK+ + + L
Sbjct: 149 FCEAWECFKGYQTQCPHHGFSKASLLSTLYRRVLPKIRMLLDTASNGNFLNKDVEDGWEL 208
Query: 197 MK 198
++
Sbjct: 209 VE 210
>emb|CAA57397.1| unnamed protein product [Arabidopsis thaliana]
gi|2129618|pir||S66306 hypothetical protein 1 -
Arabidopsis thaliana retrotransposon Athila
Length = 935
Score = 99.4 bits (246), Expect = 1e-19
Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 4/182 (2%)
Query: 21 IVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAV*L 77
IV P V+ NNFEIK L+ +VQ N+F G EDP H+ F RL K N ++ L
Sbjct: 61 IVPPPVQNNNFEIKSGLIAMVQGNKFHGLLMEDPLDHLDEFERLCRLTKINGVSEDGFKL 120
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSHGLIKKMGSL 137
LFPFSL D+A W +L GSIT+WD ++AFLA+F + + L + G +K
Sbjct: 121 RLFPFSLGDKAHLWEKTLPHGSITTWDDCKKAFLAKFFSNSRTARLRNEISGFTQKQNES 180
Query: 138 SMKRGRVSRKSLDFVPTMAWK-SGL*STPFNGLSYTTKMSVDAAAGGSLMNKNYTEAYAL 196
+ + P +K + L ST + G+ +M +D A+ G+ +NK+ + + L
Sbjct: 181 FCEAWERFKGYPTKCPHHGFKEASLLSTLYRGVLPKIRMLLDTASNGNFLNKDVEDGWEL 240
Query: 197 MK 198
++
Sbjct: 241 VE 242
>gb|AAF67381.1| Hypothetical protein T15F17.m [Arabidopsis thaliana]
Length = 346
Score = 98.6 bits (244), Expect = 2e-19
Identities = 61/182 (33%), Positives = 96/182 (52%), Gaps = 4/182 (2%)
Query: 21 IVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAV*L 77
IV P V+ NNF+IK +L+ +VQ N+F G P EDP H+ F RL K N ++ L
Sbjct: 29 IVPPPVQNNNFKIKSSLIAMVQGNKFHGLPMEDPLDHLDEFERLCDLTKINGVSEDGFKL 88
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSHGLIKKMGSL 137
LFPFSL D+A W +L GSIT+WD ++ FL +F + + L + G +K
Sbjct: 89 RLFPFSLGDKAHLWEKTLPQGSITTWDDCKKVFLEKFFSNSRTARLWNEISGFTQKQNES 148
Query: 138 SMKRGRVSRKSLDFVPTMAWK-SGL*STPFNGLSYTTKMSVDAAAGGSLMNKNYTEAYAL 196
+ + P +K + L ST + G+ +M +D A+ G+ +NK+ + + L
Sbjct: 149 FCEAWERFKGYQTKCPHHGFKEASLLSTLYRGVLPKIRMLLDTASNGNFLNKDVEDGWEL 208
Query: 197 MK 198
++
Sbjct: 209 VE 210
>emb|CAB81134.1| putative athila transposon protein [Arabidopsis thaliana]
gi|25354974|pir||B85075 probable athila transposon
protein [imported] - Arabidopsis thaliana
Length = 866
Score = 97.8 bits (242), Expect = 3e-19
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 4/181 (2%)
Query: 21 IVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAV*L 77
I P ++ NNFEIK L++++Q N+F G P EDP H+ F RL K N + L
Sbjct: 29 IAPPAIQNNNFEIKSGLISMIQGNKFYGLPMEDPLDHLDEFDRLCNLTKINGVSADGFKL 88
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSHGLIKKMGSL 137
LFPFSL D+A W +L SI +WD ++AFL++F + + L + G +K G
Sbjct: 89 RLFPFSLGDKAHIWEKNLPHDSIITWDDCKKAFLSKFFSNARTARLRNEISGFSQKTGES 148
Query: 138 SMKRGRVSRKSLDFVPTMAW-KSGL*STPFNGLSYTTKMSVDAAAGGSLMNKNYTEAYAL 196
+ + + P + K+ + ST + G+ +M +D A+ G+ NK+ E + L
Sbjct: 149 FCEAWERFKGYTNQCPHHGFTKASMLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWEL 208
Query: 197 M 197
+
Sbjct: 209 V 209
>gb|AAF63125.1| Similar to Athila ORF 1 [Arabidopsis thaliana]
gi|25354973|pir||A96501 hypothetical protein F2J6.11
[imported] - Arabidopsis thaliana
Length = 823
Score = 97.8 bits (242), Expect = 3e-19
Identities = 63/191 (32%), Positives = 99/191 (50%), Gaps = 4/191 (2%)
Query: 12 PSMEEPQAIIVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN 71
P +A IV P ++ NNFEIK L++++Q N+F G P EDP H+ +F RL K N
Sbjct: 56 PRNHHQRAGIVPPPIQNNNFEIKSGLISMIQSNKFHGLPMEDPLDHLDNFDRLCSLTKIN 115
Query: 72 ---QEAV*LHLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSH 128
+++ L LFPFSL D+A W +L V S+ + D ++AFLA+F + + L +
Sbjct: 116 GVSEDSFKLRLFPFSLGDKAHLWEKTLPVDSVDTLDDCKKAFLAKFFSNSRTARLRNEIS 175
Query: 129 GLIKKMG-SLSMKRGRVSRKSLDFVPTMAWKSGL*STPFNGLSYTTKMSVDAAAGGSLMN 187
G +K S + R S K+ L ST + G +M +D + G+ +N
Sbjct: 176 GFNQKNSESFAEAWERFKGYSTQCPHHGFKKASLLSTLYRGALPKIRMLLDTTSNGNFLN 235
Query: 188 KNYTEAYALMK 198
K+ E + L++
Sbjct: 236 KDVAEGWELVE 246
>gb|AAM15284.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|20197712|gb|AAM15220.1| putative Athila retroelement
ORF1 protein [Arabidopsis thaliana]
Length = 277
Score = 97.4 bits (241), Expect = 4e-19
Identities = 61/182 (33%), Positives = 95/182 (51%), Gaps = 4/182 (2%)
Query: 21 IVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAV*L 77
IV P V+ NNFEIK L++++Q N+F G P +DP H+ SF RL G N ++
Sbjct: 81 IVPPPVQNNNFEIKSGLISMIQGNKFHGLPMKDPLDHLDSFDRLCGLTNINGVTEDMFKQ 140
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSHGLIKKMGSL 137
LFPFS+ D+A W +L SITSWD ++AFLA+F + L + G +K
Sbjct: 141 RLFPFSVGDKAHHWEKTLPSDSITSWDDCKKAFLAKFFSNACTTRLRNEISGFNQKNNET 200
Query: 138 SMKRGRVSRKSLDFVPTMAW-KSGL*STPFNGLSYTTKMSVDAAAGGSLMNKNYTEAYAL 196
+ + P + K+ L ST + G +M +D A+ G+ +NK+ + + L
Sbjct: 201 FCEAWERFKSYTTQCPHHGFKKASLLSTLYRGALPKIRMLLDTASNGNFLNKDVVKGWEL 260
Query: 197 MK 198
++
Sbjct: 261 VE 262
>emb|CAB77937.1| putative athila transposon protein [Arabidopsis thaliana]
gi|4325357|gb|AAD17354.1| contains similarity to
Arabidopsis thaliana retrotransposon Athila hypothetical
protein 1 (GB:X81801) gi|25407410|pir||H85076 probable
athila transposon protein [imported] - Arabidopsis
thaliana
Length = 446
Score = 95.5 bits (236), Expect = 1e-18
Identities = 59/178 (33%), Positives = 91/178 (50%), Gaps = 4/178 (2%)
Query: 21 IVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAV*L 77
IV P V+ NNFEI L++++Q N+F G P EDP ++ SF RL G K N ++ L
Sbjct: 37 IVPPPVQINNFEIMSGLISMIQGNKFHGLPKEDPLDNLDSFDRLCGLTKINGVTKDMFKL 96
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSHGLIKKMGSL 137
LFPFSL D+A W +L SITSWD ++ FLA+F + + L + G +K
Sbjct: 97 RLFPFSLGDKAHHWKKTLPPDSITSWDDCKKDFLAKFFSNARTARLRNEISGFTQKNNET 156
Query: 138 SMKRGRVSRKSLDFVPTMAW-KSGL*STPFNGLSYTTKMSVDAAAGGSLMNKNYTEAY 194
+ + + P + K+ L T + G +M +D + G+ +N + E +
Sbjct: 157 FFEASERFKSYTTYCPHHGFKKASLLRTLYRGALPKIRMLLDTTSNGNFLNNDVAEGW 214
>gb|AAD19759.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354976|pir||E84475 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 750
Score = 94.7 bits (234), Expect = 2e-18
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 4/182 (2%)
Query: 21 IVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAV*L 77
IV P V+ NNFEIK L+ +VQ N+F G P ED H+ F RL K N ++
Sbjct: 29 IVLPLVQNNNFEIKSGLIAMVQGNKFHGLPMEDSLDHLDEFERLCDLTKINGVSEDGFKF 88
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSHGLIKKMGSL 137
LFPFSL D+ W +L SIT+WD ++AF A+F + + L + G +K
Sbjct: 89 RLFPFSLGDKTHLWEKTLPQNSITTWDDCKKAFFAKFFSNSRTARLRNEISGFTQKQNES 148
Query: 138 SMKRGRVSRKSLDFVPTMAWK-SGL*STPFNGLSYTTKMSVDAAAGGSLMNKNYTEAYAL 196
+ + P +K + L ST + G+ +M +D A+ G+ +NK+ + + L
Sbjct: 149 FCEAWERFKGYQTKCPHPGFKQASLLSTLYRGVLPKLRMLLDTASNGNFLNKDVEKGWEL 208
Query: 197 MK 198
++
Sbjct: 209 VE 210
>gb|AAC13587.1| contains similarity to retrotransposon-like proteins [Arabidopsis
thaliana] gi|7486622|pir||T01163 hypothetical protein
F7N22.15 - Arabidopsis thaliana
Length = 589
Score = 92.4 bits (228), Expect = 1e-17
Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 7/146 (4%)
Query: 21 IVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAV*L 77
IV P V+ NNFEIK L++++Q N+F G P EDP H+ SF RL G K N ++ L
Sbjct: 37 IVPPPVQNNNFEIKIGLISMIQGNKFHGLPMEDPLDHLDSFDRLCGLTKINGVTEDMFKL 96
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLA--RFSPHLKPLNLEIKSHGLIKKMG 135
LF FSL D+A W +L SITSWD ++AFLA R++ L + K G+IK
Sbjct: 97 RLFSFSLGDKAHHWEKTLPPDSITSWDDCKKAFLAKSRYTTSLMKSTSKCKKGGMIKLKS 156
Query: 136 SLSMKRGRVSRKSLDFVP--TMAWKS 159
+ +G ++ ++ P +++KS
Sbjct: 157 CATFNQGGFNKGYNNYKPNQNLSYKS 182
>gb|AAD15357.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354975|pir||C84493 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 929
Score = 92.0 bits (227), Expect = 2e-17
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 4/182 (2%)
Query: 21 IVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAV*L 77
IV V+ NNF+IK L+ +VQ N+F G P EDP H+ RL G K N ++ L
Sbjct: 61 IVLRPVQNNNFKIKSGLIAMVQGNKFHGLPMEDPLDHLDELERLCGLTKINGVSEDGFKL 120
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSHGLIKKMGSL 137
LFPFSL D+A W +L SIT+WD + AFLA+F + + L + G K
Sbjct: 121 RLFPFSLGDKAHLWEKTLPKNSITTWDDCKMAFLAKFFSNSRTARLRNEISGFTLKQNES 180
Query: 138 SMKRGRVSRKSLDFVPTMAW-KSGL*STPFNGLSYTTKMSVDAAAGGSLMNKNYTEAYAL 196
+ + P + ++ L +T + G+ +M +D A+ G+ + K+ E + L
Sbjct: 181 FCEAWERFKGYQTKCPHHGFSQASLLNTLYRGVLPKIRMLLDTASNGNFLKKDIEEGWEL 240
Query: 197 MK 198
++
Sbjct: 241 VE 242
>gb|AAB18645.1| unknown [Hordeum vulgare] gi|7489374|pir||T06196 hypothetical
protein - barley
Length = 337
Score = 92.0 bits (227), Expect = 2e-17
Identities = 57/182 (31%), Positives = 97/182 (52%), Gaps = 8/182 (4%)
Query: 22 VYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKE---NQEAV*LH 78
+ P ++EI ALLNLV + QFSG P+ED H+++F+ L K+ + + + L
Sbjct: 23 IAPATNAESYEINAALLNLVMKEQFSGLPSEDVASHLNTFIELCDMQKKKDVDNDVIKLK 82
Query: 79 LFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLE---IKSHGLIKKMG 135
LFPFSLRDRA WF SL SI SWD + A+++++ P K ++L + L +
Sbjct: 83 LFPFSLRDRAKTWFSSLPKSSIDSWDKCKDAYISKYFPPAKIISLRNDIMNFKQLDHEHV 142
Query: 136 SLSMKRGRVSRKSLDFVPTMAWKSGL*STPFNGLSYTTKMSVDAAAGGSLMNKNYTEAYA 195
+ + +R ++ ++ W + + GL++ ++ +D+A GG+ M EA
Sbjct: 143 AQAWERMKLMIRNCPANGLSLWM--IIQIFYAGLNFASRNILDSATGGTFMEITLGEATK 200
Query: 196 LM 197
L+
Sbjct: 201 LL 202
>gb|AAD20430.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25411482|pir||C84506 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 622
Score = 91.3 bits (225), Expect = 3e-17
Identities = 51/116 (43%), Positives = 70/116 (59%), Gaps = 3/116 (2%)
Query: 2 AERTLKEYATPSMEEPQAIIVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSF 61
A + + + P++ + I P VE NNFEIK +L+N+VQ ++F G EDP H+ F
Sbjct: 28 AHQPIGAFDEPNIRGNRNGIQAPPVENNNFEIKSSLINMVQTSKFHGLSMEDPLDHLEQF 87
Query: 62 LRLSGTIKEN---QEAV*LHLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARF 114
L T+K N ++A L LFPFSL DRA W +L SITSWD +RAFL++F
Sbjct: 88 DMLCSTVKINGISEDAFKLRLFPFSLGDRARIWEKNLPQRSITSWDQCKRAFLSKF 143
>gb|AAM15150.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354977|pir||A84486 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 1012
Score = 91.3 bits (225), Expect = 3e-17
Identities = 67/211 (31%), Positives = 102/211 (47%), Gaps = 47/211 (22%)
Query: 12 PSMEEPQAIIVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN 71
P +A IV P ++ NNF+IK L++++Q N+F G P EDP H+ +F RL K N
Sbjct: 15 PRNHHQRAGIVPPPIQNNNFKIKSDLISMIQGNKFHGLPMEDPLDHLDNFDRLCSLTKIN 74
Query: 72 ---QEAV*LHLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSH 128
+E+ L LFPFSL D+A W +L V SI +WD ++AFLA+F + + L +
Sbjct: 75 GVSEESFKLRLFPFSLGDKAHLWEKTLPVKSIDTWDDCKKAFLAKFFSNSRKARLRSEIS 134
Query: 129 GLIKKMGSLSMKRGRVSRKSLDFVPTMAWKSGL*STPFNGLSYTT--------------- 173
G +K S F + AW+ F G YTT
Sbjct: 135 GFNQK-------------NSESF--SEAWER------FKG--YTTQCPHHESLPPQYSIL 171
Query: 174 ------KMSVDAAAGGSLMNKNYTEAYALMK 198
+M +D A+ G+++NK+ E + L++
Sbjct: 172 RCLPKIRMLLDTASNGNILNKDVAEGWELVE 202
>gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana]
Length = 1586
Score = 91.3 bits (225), Expect = 3e-17
Identities = 49/97 (50%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 21 IVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAV*L 77
IV P V+ NNFEIK L+ +VQ N+F G P EDP H+ F RL K N ++ L
Sbjct: 61 IVPPPVQNNNFEIKSGLIAMVQSNKFHGLPMEDPLDHLDEFDRLCSLTKINRVSEDGFKL 120
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARF 114
LFPFSL D+A W SL GSITSW+ ++AFLA+F
Sbjct: 121 RLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKF 157
>gb|AAF67372.1| Hypothetical protein T15F17.d [Arabidopsis thaliana]
Length = 677
Score = 90.1 bits (222), Expect = 6e-17
Identities = 47/118 (39%), Positives = 69/118 (57%), Gaps = 3/118 (2%)
Query: 21 IVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAV*L 77
I P ++ NNFEIK L++++Q N+F G P EDP H+ F RL K N ++ L
Sbjct: 29 IAPPAIQNNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFNRLYNLTKINGVSEDGFKL 88
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSHGLIKKMG 135
LFPFSL D+A W +L SIT+WD ++AFL++F + + L + G +K+G
Sbjct: 89 RLFPFSLGDKAHMWEKNLPHDSITTWDDCKKAFLSKFFSNARTARLRNEISGFSQKIG 146
>gb|AAD23706.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354979|pir||F84476 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 733
Score = 88.6 bits (218), Expect = 2e-16
Identities = 46/118 (38%), Positives = 68/118 (56%), Gaps = 3/118 (2%)
Query: 21 IVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAV*L 77
I P ++ NNFEIK L++++Q N+F G P EDP H+ F RL K N ++ L
Sbjct: 29 IAPPVIQNNNFEIKSGLISMIQGNKFHGLPMEDPLNHLDEFDRLCNLTKINGVIEDGFNL 88
Query: 78 HLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPHLKPLNLEIKSHGLIKKMG 135
LFPFSL +A W +L SIT+WD ++AFL++F + + L + G ++K G
Sbjct: 89 RLFPFSLGGKAHIWEKNLPHDSITTWDDCKKAFLSKFFSNARTARLRNEISGFLQKAG 146
>gb|AAX92771.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 689
Score = 87.8 bits (216), Expect = 3e-16
Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 28/205 (13%)
Query: 1 MAERTLKEYATPSMEEPQAIIVYPTVEGNN--FEIKPALLNLVQQNQFSGSPTEDPNLHI 58
MA +TL+E+A PS + + V P V + F++K +L+ + Q + F G P ED N H+
Sbjct: 1 MASKTLREFAFPSADN---VAVEPQVNIGDVDFDLKSSLIMMAQASLFCGKPNEDANAHL 57
Query: 59 SSFLRLSGTIK---ENQEAV*LHLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFS 115
FL + T + +AV L LFPFSL RA WF++ ++ +WD AFL++F
Sbjct: 58 QQFLEICSTYTIKGVSPDAVRLRLFPFSLLGRAKQWFYA-NHAAVNTWDKCSTAFLSKFF 116
Query: 116 PHLKPLNLEIKSHGLIKKMGSLSMKRGRVS--RKSLDFVPTMAWKSGL*STPFNGLSYTT 173
P MG + RGR+S +++ D AW+ NGL+ +
Sbjct: 117 P-----------------MGKTNALRGRISSFQQTRDESIPEAWERLQDYNFHNGLTPMS 159
Query: 174 KMSVDAAAGGSLMNKNYTEAYALMK 198
+ +D GG+ +K A L++
Sbjct: 160 RNHLDTTTGGAFFSKTVQGAVELIE 184
>ref|XP_474896.1| OSJNBa0021F22.23 [Oryza sativa (japonica cultivar-group)]
gi|58532094|emb|CAD40055.3| OSJNBa0085C10.7 [Oryza
sativa (japonica cultivar-group)]
gi|38346490|emb|CAE03729.2| OSJNBa0021F22.23 [Oryza
sativa (japonica cultivar-group)]
Length = 489
Score = 83.2 bits (204), Expect = 7e-15
Identities = 66/219 (30%), Positives = 103/219 (46%), Gaps = 40/219 (18%)
Query: 1 MAERTLKEYATPSMEEPQAIIVYPTVEGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISS 60
M +TL E+A PS + AI + +F++K +L+ + Q + F G P ED N H+
Sbjct: 1 MPNKTLCEFAAPSTDNV-AIGPQVNIGDVDFDLKSSLITMAQASPFCGKPNEDANAHLQQ 59
Query: 61 FLRLSGTIK---ENQEAV*LHLFPFSLRDRASAWFHSLEVGSITSWDGMRRAFLARFSPH 117
FL + T + +AV L LFPFSL RA WF++ V +I +WD FL++F P
Sbjct: 60 FLEICSTYTIKGVSPDAVRLRLFPFSLLGRAKQWFYANRV-AINTWDKCSTTFLSKFFP- 117
Query: 118 LKPLNLEIKSHGLIKKMGSLSMKRGRVS--RKSLDFVPTMAWK---SGL*STP------- 165
MG RGR+S +++ D AW+ + + P
Sbjct: 118 ----------------MGKTKALRGRISSFQQTRDESIPEAWERLHEYVAACPHHGMDDW 161
Query: 166 ------FNGLSYTTKMSVDAAAGGSLMNKNYTEAYALMK 198
+NGL+ ++ +DAAAGG+ +K A L++
Sbjct: 162 LIPQNFYNGLTPMSRDHMDAAAGGAFFSKTVQGAIDLIE 200
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,174,945
Number of Sequences: 2540612
Number of extensions: 17511895
Number of successful extensions: 41021
Number of sequences better than 10.0: 266
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 40655
Number of HSP's gapped (non-prelim): 287
length of query: 276
length of database: 863,360,394
effective HSP length: 126
effective length of query: 150
effective length of database: 543,243,282
effective search space: 81486492300
effective search space used: 81486492300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 74 (33.1 bits)
Medicago: description of AC146712.3