BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146711.3 - phase: 0
(61 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_909668.1| putative copia-type pol polyprotein [Oryza sati... 74 1e-12
gb|AAX94887.1| retrotransposon protein, putative, Ty1-copia sub-... 73 2e-12
ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica... 73 2e-12
gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cul... 72 3e-12
ref|XP_474240.1| OSJNBa0084K01.24 [Oryza sativa (japonica cultiv... 72 3e-12
ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cu... 72 4e-12
gb|AAP51738.1| putative copia-type pol polyprotein [Oryza sativa... 72 5e-12
emb|CAE02142.1| OSJNBa0069D17.3 [Oryza sativa (japonica cultivar... 71 7e-12
gb|AAK53851.1| Putative copia-like retroelement [Oryza sativa] 71 7e-12
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 70 1e-11
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 70 1e-11
gb|AAP53333.1| putative polyprotein [Oryza sativa (japonica cult... 70 1e-11
emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa (japonica cultiva... 70 1e-11
gb|AAS98452.2| putative polyprotein [Oryza sativa (japonica cult... 70 1e-11
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays] 69 3e-11
emb|CAE05094.3| OSJNBa0009K15.14 [Oryza sativa (japonica cultiva... 69 3e-11
gb|AAD09019.1| copia protein [Zea mays] 69 3e-11
ref|XP_468615.1| putative copia-type pol polyprotein [Oryza sati... 69 4e-11
ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (jap... 69 4e-11
gb|AAL75483.1| putative pol protein [Zea mays] 69 4e-11
>ref|NP_909668.1| putative copia-type pol polyprotein [Oryza sativa]
gi|12583809|gb|AAG59661.1| putative copia-type pol
polyprotein [Oryza sativa]
Length = 1778
Score = 73.6 bits (179), Expect = 1e-12
Identities = 33/50 (66%), Positives = 43/50 (86%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKST+G+CQFL ++L WS +KQN+IALSTTEAEY +A S
Sbjct: 1457 DSDYAGCKVDRKSTTGTCQFLGRSLVSWSSKKQNSIALSTTEAEYVAAGS 1506
>gb|AAX94887.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1718
Score = 73.2 bits (178), Expect = 2e-12
Identities = 33/50 (66%), Positives = 42/50 (84%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKST+G+CQFL Q+L WS +KQN+IALST EAEY +A S
Sbjct: 1044 DSDYAGCKVDRKSTTGTCQFLRQSLVSWSSKKQNSIALSTAEAEYVAADS 1093
>ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 940
Score = 72.8 bits (177), Expect = 2e-12
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
DADYAG K++RKSTSG+CQFL ++L WS +KQN++ALST EAEY S S
Sbjct: 788 DADYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQNSVALSTAEAEYISTGS 837
>gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533180|ref|NP_920892.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22748369|gb|AAN05371.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1299
Score = 72.4 bits (176), Expect = 3e-12
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKSTSGSCQ L ++L WS +KQN++ALST EAEY SA S
Sbjct: 1147 DSDYAGCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGS 1196
>ref|XP_474240.1| OSJNBa0084K01.24 [Oryza sativa (japonica cultivar-group)]
gi|38346084|emb|CAE04852.2| OSJNBa0084K01.24 [Oryza
sativa (japonica cultivar-group)]
Length = 543
Score = 72.4 bits (176), Expect = 3e-12
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKSTSGSCQ L ++L WS +KQN++ALST EAEY SA S
Sbjct: 391 DSDYAGCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGS 440
>ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28209450|gb|AAO37468.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1128
Score = 72.0 bits (175), Expect = 4e-12
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKSTSGSCQ L ++L WS +KQN++ALST EAEY SA S
Sbjct: 974 DSDYAGYKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYISAGS 1023
>gb|AAP51738.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530298|ref|NP_919451.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|19920210|gb|AAM08642.1| Putative
copia-type pol polyprotein [Oryza sativa]
Length = 1866
Score = 71.6 bits (174), Expect = 5e-12
Identities = 32/50 (64%), Positives = 41/50 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
+ DYAG K++RKSTSG+CQFL ++L WS +KQN++ LSTTEAEY SA S
Sbjct: 1224 NVDYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQNSVVLSTTEAEYVSAGS 1273
>emb|CAE02142.1| OSJNBa0069D17.3 [Oryza sativa (japonica cultivar-group)]
gi|50923625|ref|XP_472173.1| OSJNBa0069D17.3 [Oryza
sativa (japonica cultivar-group)]
Length = 1156
Score = 71.2 bits (173), Expect = 7e-12
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKST+G+CQFL ++L WS +KQN+IALST EAEY +A S
Sbjct: 1004 DSDYAGCKVDRKSTTGTCQFLGRSLVSWSFKKQNSIALSTAEAEYVAAGS 1053
>gb|AAK53851.1| Putative copia-like retroelement [Oryza sativa]
Length = 809
Score = 71.2 bits (173), Expect = 7e-12
Identities = 32/50 (64%), Positives = 40/50 (80%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
DADY G K++RKSTSG+CQFL ++L WS +KQN++ LST EAEY SA S
Sbjct: 47 DADYVGCKVDRKSTSGTCQFLGRSLVSWSSKKQNSVTLSTAEAEYVSARS 96
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 70.5 bits (171), Expect = 1e-11
Identities = 32/50 (64%), Positives = 40/50 (80%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++R STSGSCQ L ++L WS +KQN++ALST EAEY SA S
Sbjct: 1387 DSDYAGCKVDRNSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGS 1436
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 70.1 bits (170), Expect = 1e-11
Identities = 32/50 (64%), Positives = 40/50 (80%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYA K++RKSTSGSCQ L ++L WS +KQN++ALST EAEY SA S
Sbjct: 1432 DSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGS 1481
>gb|AAP53333.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37533488|ref|NP_921046.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18057154|gb|AAL58177.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 877
Score = 70.1 bits (170), Expect = 1e-11
Identities = 31/48 (64%), Positives = 41/48 (84%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESA 59
D+DYAG K++RKST+G+CQFL ++L WS +KQN+IALST EAEY +A
Sbjct: 261 DSDYAGCKVDRKSTTGTCQFLGRSLVSWSSKKQNSIALSTAEAEYVAA 308
>emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa (japonica cultivar-group)]
gi|50922011|ref|XP_471366.1| OSJNBb0052B05.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1549
Score = 70.1 bits (170), Expect = 1e-11
Identities = 33/50 (66%), Positives = 40/50 (80%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
DADYA K++RKSTSG+CQFL ++L WS +KQN +ALST EAEY SA S
Sbjct: 1397 DADYARCKVDRKSTSGTCQFLGRSLVSWSSKKQNFVALSTAEAEYISAGS 1446
>gb|AAS98452.2| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1005
Score = 70.1 bits (170), Expect = 1e-11
Identities = 32/50 (64%), Positives = 40/50 (80%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKSTSGSCQ L ++L WS +KQN++ LST EAEY SA S
Sbjct: 853 DSDYAGCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVDLSTAEAEYVSAGS 902
>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
Length = 2319
Score = 68.9 bits (167), Expect = 3e-11
Identities = 30/50 (60%), Positives = 41/50 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKST+G+CQFL ++L WS +KQN +ALST EAEY +A +
Sbjct: 1670 DSDYAGCKVDRKSTTGTCQFLGRSLVSWSSKKQNCVALSTAEAEYIAAGA 1719
>emb|CAE05094.3| OSJNBa0009K15.14 [Oryza sativa (japonica cultivar-group)]
Length = 845
Score = 68.9 bits (167), Expect = 3e-11
Identities = 32/50 (64%), Positives = 39/50 (78%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYA K++RKSTSGSCQ L ++L WS +KQN +ALST EAEY SA S
Sbjct: 693 DSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQNFVALSTAEAEYVSAGS 742
>gb|AAD09019.1| copia protein [Zea mays]
Length = 447
Score = 68.9 bits (167), Expect = 3e-11
Identities = 30/49 (61%), Positives = 41/49 (83%)
Query: 11 LDADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESA 59
LD+DYAG K++RKSTSG+CQFL ++L W+ +KQ ++ALST EAEY +A
Sbjct: 340 LDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAA 388
>ref|XP_468615.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|30017555|gb|AAP12977.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1896
Score = 68.6 bits (166), Expect = 4e-11
Identities = 30/48 (62%), Positives = 41/48 (84%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESA 59
D+DYAG K++RKST+G+CQFL ++L WS +KQN+IALST +AEY +A
Sbjct: 1301 DSDYAGCKVDRKSTTGTCQFLGRSLVSWSSKKQNSIALSTAKAEYVAA 1348
>ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|30017518|gb|AAP12940.1| transposon protein, putative,
CACTA, En/Spm sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 1975
Score = 68.6 bits (166), Expect = 4e-11
Identities = 33/53 (62%), Positives = 40/53 (75%)
Query: 9 SLLDADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
S D DYA K++RKSTSGSCQ L ++L WS +KQN++ALST EAEY SA S
Sbjct: 1819 SYSDLDYAVCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGS 1871
>gb|AAL75483.1| putative pol protein [Zea mays]
Length = 1553
Score = 68.6 bits (166), Expect = 4e-11
Identities = 30/48 (62%), Positives = 40/48 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESA 59
D+DYAG K++RKSTSG+CQFL ++L WS +KQ ++ALST EAEY +A
Sbjct: 1401 DSDYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQTSVALSTAEAEYVAA 1448
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.332 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,755,896
Number of Sequences: 2540612
Number of extensions: 1883471
Number of successful extensions: 6878
Number of sequences better than 10.0: 408
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 6474
Number of HSP's gapped (non-prelim): 411
length of query: 61
length of database: 863,360,394
effective HSP length: 37
effective length of query: 24
effective length of database: 769,357,750
effective search space: 18464586000
effective search space used: 18464586000
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146711.3