Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146708.4 + phase: 0 
         (298 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_466880.1| hypothetical protein [Oryza sativa (japonica cu...    70  1e-10
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...    67  5e-10
emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana] gi|3...    65  2e-09
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...    64  7e-09
dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cul...    63  1e-08
ref|XP_470258.1| Unknown protein [Oryza sativa (japonica cultiva...    62  2e-08
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali...    60  1e-07
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ...    59  1e-07
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g...    59  2e-07
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    58  3e-07
ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thal...    58  3e-07
ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana]           57  6e-07
dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ...    57  8e-07
gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thali...    56  1e-06
gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D8...    56  1e-06
ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thal...    54  4e-06
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210...    54  5e-06
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    54  7e-06
dbj|BAD53882.1| hypothetical protein [Oryza sativa (japonica cul...    53  9e-06
pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana g...    53  1e-05

>ref|XP_466880.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|48717057|dbj|BAD23746.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 212

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 45/158 (28%), Positives = 75/158 (46%), Gaps = 7/158 (4%)

Query: 138 WKPPSAPWVKVNTDGSVLNNS--GACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGFIL 195
           W+ P A W+K+N DGS  + +   + GG++RDH G F+  +   +GR +    E++    
Sbjct: 51  WRKPEAGWIKLNFDGSSKHATKIASIGGVYRDHEGAFVLGYAERIGRATSSVAELAALRR 110

Query: 196 VMEHAALHGWYNIWLESDASSALMVFKNPSLVPIL--LRNRWHNARTLNV--QVISSHIF 251
            +E    +GW  +W E D+ + + V  + + V     LR     A  L +   +  SH++
Sbjct: 111 GLELVVRNGWRRVWAEGDSKTVVDVVCDRANVRSEEDLRQCREIAALLPLIDDMAVSHVY 170

Query: 252 REGNVCVDRLANLGHSVV-GEVWLSTLPSDFHQVFYED 288
           R GN      A LGH  V   VW +  P +  +   +D
Sbjct: 171 RSGNKVAHGFARLGHKAVRPRVWRAAPPEEVLRFLQQD 208


>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana] gi|25412100|pir||F84611 hypothetical protein
           At2g22350 [imported] - Arabidopsis thaliana
           gi|15227192|ref|NP_179822.1| RNase H domain-containing
           protein [Arabidopsis thaliana]
          Length = 321

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 80/305 (26%), Positives = 121/305 (39%), Gaps = 46/305 (15%)

Query: 1   MCSFCLEQVETSDHLFLRCKFVVTLWSWLCSQLHVGLDFSSIKALMSSLPRHCSSQVRDL 60
           +C  C    ET  H+   C  +  +WS L                   +PR    Q+R  
Sbjct: 34  VCQICQGGEETILHVLRDCPAMAGIWSRL-------------------VPR---DQIRQF 71

Query: 61  YVAAVVHMVHSIWWARNNVRFSSAKVSSHAVQV------RVHAFIGLSGA----VSTGKC 110
           + A+++       W   N+R   +  +   + V      R     G +G     V   K 
Sbjct: 72  FTASLLE------WIYKNLRERGSWPTVFVMAVWWGWKWRCGNIFGGNGKCRDRVKFIKD 125

Query: 111 IAADAAILDAFRIPPHRRSMREIVSVCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDH 168
           +A + AI +AF      R  R    V W  P   WVK+NTDG+   N G    GG+ RDH
Sbjct: 126 LAEEVAIANAFVKGNEVRVSRVERLVSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDH 185

Query: 169 LGTFLGAFVGNLGRCSVFDTEVSGFILVMEHAALHGWYNIWLESDASSALMVFKNPSLV- 227
            G ++G F  N+G CS    E+ G    +  A   G   + LE D S  ++ F    +  
Sbjct: 186 NGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVD-SKMVVGFLTTGIAD 244

Query: 228 --PI-LLRNRWHNARTLNVQVISSHIFREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQ 283
             P+  L    ++  +    V  SH++RE N   D LAN   S+ +G   L + P     
Sbjct: 245 SHPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLSLGLHLLESRPDVVSS 304

Query: 284 VFYED 288
           +  +D
Sbjct: 305 ILLDD 309


>emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana]
           gi|3402761|emb|CAA20207.1| hypothetical protein
           [Arabidopsis thaliana] gi|3080386|emb|CAA18706.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|7485719|pir||T05150 hypothetical protein F18E5.40 -
           Arabidopsis thaliana
          Length = 229

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 8/162 (4%)

Query: 134 VSVCWKPPSAPWVKVNTDGSV-LNNSGACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSG 192
           V V WK P    +K+N DGS       + GG+FR+H   FL  +  ++G  +    E + 
Sbjct: 59  VKVVWKKPENGRIKLNFDGSRGREGQASIGGVFRNHKAEFLLGYSESIGEATSTMAEFAA 118

Query: 193 FILVMEHAALHGWYNIWLESDASSALMVFKNPSLVPILLRNRWHN-----ARTLNVQVIS 247
               +E A  +G  ++WLE DA   + +      +     N+  N        LN   + 
Sbjct: 119 LKRGLELALENGLTDLWLEGDAKIIMDIISRRGRLRCEKTNKHVNYIKVVMPELN-NCVL 177

Query: 248 SHIFREGNVCVDRLANLGHSVVG-EVWLSTLPSDFHQVFYED 288
           SH++REGN   D+LA LGH     +VW    P     + ++D
Sbjct: 178 SHVYREGNRVADKLAKLGHQFQDPKVWRVQPPEIVLPIMHDD 219


>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 676

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 46/159 (28%), Positives = 73/159 (44%), Gaps = 6/159 (3%)

Query: 136 VCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGF 193
           + W+ P+  WV +NTDG+   N G    GG+ RD  G++L  F  N+G CS    E+ G 
Sbjct: 506 IAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGV 565

Query: 194 ILVMEHAALHGWYNIWLESDASSALMVFKN---PSLVPILLRNRWHNARTLNVQVISSHI 250
              +  A   GW  + LE D++  +   ++    S     L    H   + +  V  +H+
Sbjct: 566 YYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFLVRLCHGFISKDWIVRITHV 625

Query: 251 FREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYED 288
           +RE N   D LAN   ++  G + L + P     +  ED
Sbjct: 626 YREANRLADGLANYAFTLPFGFLLLDSCPEHVSSILLED 664


>dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 240

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 43/151 (28%), Positives = 70/151 (45%), Gaps = 9/151 (5%)

Query: 138 WKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGFIL 195
           W+ P   W+K+N DGS  +++G  + GG++RDH G FL  +   +G  +    E++    
Sbjct: 79  WRKPEEGWMKLNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALRR 138

Query: 196 VMEHAALHGWYNIWLESDASSALMVFKNPSLVPI-----LLRNRWHNARTLNVQVISSHI 250
            +E A  +GW  +W E D+ + + V  + + V       L R        L+   + SH+
Sbjct: 139 GLELAVRNGWRRVWAEGDSKAVVDVVCDRADVQSEEDLRLCREIAALLPQLDDMAV-SHV 197

Query: 251 FREGNVCVDRLANLGHSVV-GEVWLSTLPSD 280
            R GN      A LGH      VW +  P +
Sbjct: 198 RRGGNKVAHGFAELGHRAARPRVWRAAPPDE 228


>ref|XP_470258.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
           gi|22773232|gb|AAN06838.1| Unknown protein [Oryza sativa
           (japonica cultivar-group)]
          Length = 210

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 41/137 (29%), Positives = 62/137 (44%), Gaps = 8/137 (5%)

Query: 138 WKPPSAPWVKVNTDGSVLNNSGAC--GGLFRDHLGTFLGAFVGNL--GRCSVFDTEVSGF 193
           W+ P   W+K+N DGS  + +GA   GG FRDH G F+  +   +  G  S F  E++  
Sbjct: 47  WRKPEVGWMKLNFDGSRNDATGAASIGGAFRDHEGAFVAGYAERMIVGGASSFTAELAAL 106

Query: 194 ILVMEHAALHGWYNIWLESDASSALMVFKNPSLVPILLRNRWHNARTLNVQVIS----SH 249
              +E AA +GW  +W E D+ + + V    + V      R        +  +     SH
Sbjct: 107 RRGLELAARYGWRRVWAEGDSRAVVDVVHGRAGVRSEEDRRQCGEIAALLPALDGVAVSH 166

Query: 250 IFREGNVCVDRLANLGH 266
           + R+ N      A LGH
Sbjct: 167 LCRDENKVAHGFAKLGH 183


>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|20197456|gb|AAM15081.1| putative reverse
           transcriptase [Arabidopsis thaliana]
           gi|25407930|pir||H84677 hypothetical protein At2g27870
           [imported] - Arabidopsis thaliana
           gi|15226268|ref|NP_180354.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 314

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 49/167 (29%), Positives = 74/167 (43%), Gaps = 22/167 (13%)

Query: 136 VCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGF 193
           + W  P   W K+NTDG+   N G  + GG+ RD  G + G F  N+G CS    E+ G 
Sbjct: 144 IAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWG- 202

Query: 194 ILVMEHAALHGWYNIW------LESDASSALMV-FKNPSLVPI----LLRNRWHNARTLN 242
                    +G Y  W      LE +  S ++V F    +  +     L    H+  + +
Sbjct: 203 -------VYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRD 255

Query: 243 VQVISSHIFREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYED 288
            +V  SH++RE N   D LAN   S+ +G   LS +P     +  +D
Sbjct: 256 WRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDSLRFILLDD 302


>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
          Length = 633

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 53/171 (30%), Positives = 81/171 (46%), Gaps = 14/171 (8%)

Query: 134 VSVCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVS 191
           +S+ W PPS  W K+NTDG+   N G    GG+ RD  G +   FV N+G CS    E+ 
Sbjct: 448 MSIKWTPPSTGWFKLNTDGASRGNPGLATAGGVVRDGEGQWCVGFVLNIGICSAPLAELW 507

Query: 192 GFILVMEHAALHGWYNIWLESDASSALMV------FKNPSLVPILLRNRW-HNARTLNVQ 244
           G    +  A   G   + LE D  S L+V       ++   +  L+R  +   +R   V+
Sbjct: 508 GVYYGLHIAWERGIRRLELEVD--STLVVGFLQAGIEDSHPLSFLVRLCYGFISRDWIVR 565

Query: 245 VISSHIFREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYEDRCSMPR 294
           +  SH++RE N   D LAN   S+ +G     ++P+    +  ED   + R
Sbjct: 566 I--SHVYREANRLADGLANYAFSLPLGFHACGSMPAPVASIALEDAAGVVR 614


>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
           gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
           thaliana]
          Length = 1055

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 50/165 (30%), Positives = 68/165 (40%), Gaps = 6/165 (3%)

Query: 138 WKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGFIL 195
           W  P   WVKVNTDG+   N G  + GG+ RD  G + G F  N+GRCS    E+ G   
Sbjct: 561 WVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYY 620

Query: 196 VMEHAALHGWYNIWLESDASSALMVFK---NPSLVPILLRNRWHNARTLNVQVISSHIFR 252
            +  A       + LE D+   +   K   + S     L    H     +  V   H++R
Sbjct: 621 GLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYR 680

Query: 253 EGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYEDRCSMPRIR 296
           E N   D LAN   S+ +G      +P     +  ED     R R
Sbjct: 681 EANRLADGLANYAFSLSLGFHSFDLVPDAMSSLLREDTLGSTRPR 725


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana] gi|25408936|pir||A84888 hypothetical protein
            At2g45230 [imported] - Arabidopsis thaliana
          Length = 1374

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 67/273 (24%), Positives = 108/273 (39%), Gaps = 32/273 (11%)

Query: 2    CSFCLEQVETSDHLFLRCKFVVTLWSWLCSQLHVGLDF--SSIKALMSSLPRHCSSQVRD 59
            C  C    ET +HL  +C F    W+        G ++  S  + +   L  H S     
Sbjct: 1092 CVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEES 1151

Query: 60   LYVAAVVHMVHSIWWARNNVRFSSAKVSSHAVQVRVHAFIGLSGAVSTGKCIAADAAILD 119
             + A +  ++  +W  RN++ F   + ++  V ++                   D    +
Sbjct: 1152 DHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKA----------------TEDMDAWN 1195

Query: 120  AFRIP-PHRRSMREIVSVCWKPPSAPWVKVNTDGSVLNNSGAC--GGLFRDHLGTFLGAF 176
              + P P   S      V W+PPS  WVK NTDG+   + G C  G + R+H G  L   
Sbjct: 1196 NRKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLG 1255

Query: 177  VGNL-GRCSVFDTEVSGFILVMEHAALHGWYNIWLESDASSALMVFKN----PSLVPIL- 230
            +  L  + SV +TEV      +   +   +  +  ESD+   + + +N    PSL P + 
Sbjct: 1256 LRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLVSLIQNEMDIPSLAPRIQ 1315

Query: 231  -LRNRWHNARTLNVQVISSHIFREGNVCVDRLA 262
             +RN   +   +  Q       REGN   DR A
Sbjct: 1316 DIRNLLRHFEEVKFQFTR----REGNNVADRTA 1344


>ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thaliana]
          Length = 396

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 50/169 (29%), Positives = 77/169 (44%), Gaps = 12/169 (7%)

Query: 136 VCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGF 193
           + WK PS  W  VNTDG+   N G     G+ RD  G++LG F  N+G CS    E+ G 
Sbjct: 226 IVWKKPSERWATVNTDGASHGNPGFATARGVVRDGEGSWLGGFALNIGVCSAPLAELWGV 285

Query: 194 ILVMEHAALHGWYNIWLESDASSALMVFKN-----PSLVPILLRNRWHNARTLNVQVISS 248
              +  A   G   + LE ++   +   ++       L  ++   +   AR   V+V  +
Sbjct: 286 YYGLVTAWERGVRRVVLEVESKLVVGFLQSGIRDTHPLAFLVRLCQGFIARDWLVRV--T 343

Query: 249 HIFREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYEDR--CSMPR 294
           H++RE N   D LAN   ++ +G   L   P+  + +  ED    S PR
Sbjct: 344 HVYREANRLADGLANYAFTLPIGLQLLDDCPASVNSIMVEDSVGTSFPR 392


>ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana]
          Length = 175

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 136 VCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGF 193
           V W  PS  W K+NTDG+   N G    GG  R+  G +   F  N+GRCS    E+ G 
Sbjct: 5   VRWSKPSLGWCKLNTDGASHGNPGLAIAGGALRNEYGEWCFGFALNIGRCSAPLAELWGV 64

Query: 194 ILVMEHAALHGWYNIWLESDASSALMVFKN--PSLVPI-LLRNRWHNARTLNVQVISSHI 250
              +  A   G   + LE D+   +   +    S  P+  L    H   + +  V   H+
Sbjct: 65  YYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGHV 124

Query: 251 FREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYEDR--CSMPRI 295
           +RE N   D LAN    + +G    ++ PS    +  +D    S+PR+
Sbjct: 125 YREANRLADELANYAFDLPLGYHGFASPPSSLDSILRDDELGTSVPRL 172


>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 308

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 43/131 (32%), Positives = 59/131 (44%), Gaps = 5/131 (3%)

Query: 138 WKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGFIL 195
           W  P   WVKVNTDG+   N G  + GG+ RD  G + G F  N+GRCS    E+ G   
Sbjct: 140 WVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYY 199

Query: 196 VMEHAALHGWYNIWLESDASSALMVFK---NPSLVPILLRNRWHNARTLNVQVISSHIFR 252
            +  A       + LE D+ + +   K   + S     L    HN    +  V   +++R
Sbjct: 200 GLYFAWEKKVPRVELEVDSEAIVGFLKTGISDSHPLSFLVRLCHNFLQKDWLVRIVYVYR 259

Query: 253 EGNVCVDRLAN 263
           E N   D LAN
Sbjct: 260 EANCLADGLAN 270


>gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thaliana]
           gi|18394475|ref|NP_564020.1| hypothetical protein
           [Arabidopsis thaliana] gi|9665118|gb|AAF97302.1|
           Hypothetical protein [Arabidopsis thaliana]
          Length = 272

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 10/156 (6%)

Query: 118 LDAFRIPPHR-----RSMREIVSVCWKPPSAPWVKVNTDGSVLNNS--GACGGLFRDHLG 170
           LD ++   H+     R+ RE   + W PP   W K+NTDG+   N      GG+ RD  G
Sbjct: 79  LDVWKAHVHKMGVTTRTAREERLIAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDG 138

Query: 171 TFLGAFVGNLGRCSVFDTEVSGFILVMEHAALHGWYNIWLESDASSALMVFK---NPSLV 227
            +   F  N+G CS    E+ G    +  A   G   + +E D+   +   +   + S  
Sbjct: 139 NWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHP 198

Query: 228 PILLRNRWHNARTLNVQVISSHIFREGNVCVDRLAN 263
              L    H   + +  V  SH++RE N   D LAN
Sbjct: 199 LSFLVRLCHGLLSKDWSVRISHVYREANRLADGLAN 234


>gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D86310 protein
           F1L3.4 [imported] - Arabidopsis thaliana
          Length = 253

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 10/156 (6%)

Query: 118 LDAFRIPPHR-----RSMREIVSVCWKPPSAPWVKVNTDGSVLNNS--GACGGLFRDHLG 170
           LD ++   H+     R+ RE   + W PP   W K+NTDG+   N      GG+ RD  G
Sbjct: 60  LDVWKAHVHKMGVTTRTAREERLIAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDG 119

Query: 171 TFLGAFVGNLGRCSVFDTEVSGFILVMEHAALHGWYNIWLESDASSALMVFK---NPSLV 227
            +   F  N+G CS    E+ G    +  A   G   + +E D+   +   +   + S  
Sbjct: 120 NWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHP 179

Query: 228 PILLRNRWHNARTLNVQVISSHIFREGNVCVDRLAN 263
              L    H   + +  V  SH++RE N   D LAN
Sbjct: 180 LSFLVRLCHGLLSKDWSVRISHVYREANRLADGLAN 215


>ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thaliana]
          Length = 411

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 49/163 (30%), Positives = 70/163 (42%), Gaps = 33/163 (20%)

Query: 138 WKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGFIL 195
           W  P   WVK+NTDG+   N G    GG+ RD  G + G F  N+GRCS    E+     
Sbjct: 244 WGSPGVGWVKLNTDGASRGNPGLATAGGVLRDEEGNWRGGFAANIGRCSAPLAEL----- 298

Query: 196 VMEHAALHGWYNIW------LESDASSALMV-FKNPSLVP----ILLRNRWHNARTLNVQ 244
                  +G Y  W      LE +  S ++V F    +        L    +   + + +
Sbjct: 299 ---WEVYYGLYFAWAIRIPQLELEVDSEIVVGFLKTGISDTHPLFFLVRLCYGFLSKDWR 355

Query: 245 VISSHIFREGNVCVDRLANLGHSVVGEVWLSTLPSDFHQVFYE 287
           V  +H++RE N  ++ LAN   S         LPSD H  FY+
Sbjct: 356 VQITHVYREAN-HLNGLANYAFS---------LPSDLH--FYD 386


>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
           putative protein [Arabidopsis thaliana]
           gi|25407453|pir||H85088 hypothetical protein AT4g08830
           [imported] - Arabidopsis thaliana
          Length = 947

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 33/93 (35%), Positives = 45/93 (47%), Gaps = 16/93 (17%)

Query: 136 VCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGF 193
           V WKPP   WVK+NTDG+   N G    GG+ RD +G + G F  ++G CS    E+ G 
Sbjct: 839 VAWKPPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWG- 897

Query: 194 ILVMEHAALHGWYNIW------LESDASSALMV 220
                    +G Y  W      +E +  S L+V
Sbjct: 898 -------VYYGLYMAWERRFTRVELEVDSELVV 923


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana] gi|25408124|pir||C84716 hypothetical protein
            At2g31080 [imported] - Arabidopsis thaliana
          Length = 1231

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 42/132 (31%), Positives = 60/132 (44%), Gaps = 7/132 (5%)

Query: 138  WKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGFIL 195
            W+ PS  WVK+ TDG+   N G  A GG  R+  G +LG F  N+G C+    E+ G   
Sbjct: 1063 WQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYY 1122

Query: 196  VMEHAALHGWYNIWLESDASSALMVF----KNPSLVPILLRNRWHNARTLNVQVISSHIF 251
             +  A   G+  + L+ D    +        N   +  L+R       T +  V  SH++
Sbjct: 1123 GLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVR-LCQGFFTRDWLVRVSHVY 1181

Query: 252  REGNVCVDRLAN 263
            RE N   D LAN
Sbjct: 1182 REANRLADGLAN 1193


>dbj|BAD53882.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|53791828|dbj|BAD53894.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 217

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 47/151 (31%), Positives = 68/151 (44%), Gaps = 20/151 (13%)

Query: 124 PPHRRSMREIVSVCWKPPSAPWVKVNTDGSVLNNS---GACGGLFRDHLGTFLGAFVGNL 180
           PP R     I  V W PP   WVK+N DGSV N+     + GG+ RD  G  L AF    
Sbjct: 35  PPTR-----ITLVRWTPPRHGWVKLNFDGSVHNDGSGRASIGGVIRDDHGRVLLAFAERT 89

Query: 181 GRCSVFDTEVSGFILVMEHAALHGWYN-IWLESDASSALMVFKNPS----LVPILLRN-R 234
              ++   E    I  ++ A  HGW + + +E D  + + + +  S    + P +L +  
Sbjct: 90  PHATIGVVEARALIRGLQLALDHGWNDRLLVEGDDLTLVRLLRCESTHTRIPPAMLDDIL 149

Query: 235 W--HNARTLNVQVISSHIFREGNVCVDRLAN 263
           W   + R   VQ    H +REGN   D L +
Sbjct: 150 WLLDSFRVCEVQ----HAYREGNQVADALCH 176


>pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana
           gi|6630448|gb|AAF19536.1| F23N19.5 [Arabidopsis
           thaliana]
          Length = 233

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 47/168 (27%), Positives = 72/168 (41%), Gaps = 8/168 (4%)

Query: 136 VCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGF 193
           V W  PS  W K+NTDG+   N G    GG  R+  G +   F  N+GRC     E+ G 
Sbjct: 63  VRWSKPSLGWCKLNTDGASHGNPGLATAGGALRNEYGEWCFGFALNIGRCLAPLAELWGV 122

Query: 194 ILVMEHAALHGWYNIWLESDASSALMVFKN--PSLVPI-LLRNRWHNARTLNVQVISSHI 250
              +  A   G   + LE D+   +   +    S  P+  L    H   + +  V   H+
Sbjct: 123 YYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGHV 182

Query: 251 FREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYEDR--CSMPRI 295
           +RE N   D LAN    + +G    ++ P+    +  +D    S+PR+
Sbjct: 183 YREANRLADGLANYAFDLPLGYHAFASPPNSLDSILRDDELGISVPRL 230


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.326    0.137    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,328,237
Number of Sequences: 2540612
Number of extensions: 19671968
Number of successful extensions: 51194
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 51025
Number of HSP's gapped (non-prelim): 190
length of query: 298
length of database: 863,360,394
effective HSP length: 127
effective length of query: 171
effective length of database: 540,702,670
effective search space: 92460156570
effective search space used: 92460156570
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 74 (33.1 bits)


Medicago: description of AC146708.4