
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146708.4 + phase: 0
(298 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_466880.1| hypothetical protein [Oryza sativa (japonica cu... 70 1e-10
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 67 5e-10
emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana] gi|3... 65 2e-09
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 64 7e-09
dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cul... 63 1e-08
ref|XP_470258.1| Unknown protein [Oryza sativa (japonica cultiva... 62 2e-08
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 60 1e-07
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 59 1e-07
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 59 2e-07
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 58 3e-07
ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thal... 58 3e-07
ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana] 57 6e-07
dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ... 57 8e-07
gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thali... 56 1e-06
gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D8... 56 1e-06
ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thal... 54 4e-06
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 54 5e-06
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 54 7e-06
dbj|BAD53882.1| hypothetical protein [Oryza sativa (japonica cul... 53 9e-06
pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana g... 53 1e-05
>ref|XP_466880.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|48717057|dbj|BAD23746.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 212
Score = 69.7 bits (169), Expect = 1e-10
Identities = 45/158 (28%), Positives = 75/158 (46%), Gaps = 7/158 (4%)
Query: 138 WKPPSAPWVKVNTDGSVLNNS--GACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGFIL 195
W+ P A W+K+N DGS + + + GG++RDH G F+ + +GR + E++
Sbjct: 51 WRKPEAGWIKLNFDGSSKHATKIASIGGVYRDHEGAFVLGYAERIGRATSSVAELAALRR 110
Query: 196 VMEHAALHGWYNIWLESDASSALMVFKNPSLVPIL--LRNRWHNARTLNV--QVISSHIF 251
+E +GW +W E D+ + + V + + V LR A L + + SH++
Sbjct: 111 GLELVVRNGWRRVWAEGDSKTVVDVVCDRANVRSEEDLRQCREIAALLPLIDDMAVSHVY 170
Query: 252 REGNVCVDRLANLGHSVV-GEVWLSTLPSDFHQVFYED 288
R GN A LGH V VW + P + + +D
Sbjct: 171 RSGNKVAHGFARLGHKAVRPRVWRAAPPEEVLRFLQQD 208
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412100|pir||F84611 hypothetical protein
At2g22350 [imported] - Arabidopsis thaliana
gi|15227192|ref|NP_179822.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 321
Score = 67.4 bits (163), Expect = 5e-10
Identities = 80/305 (26%), Positives = 121/305 (39%), Gaps = 46/305 (15%)
Query: 1 MCSFCLEQVETSDHLFLRCKFVVTLWSWLCSQLHVGLDFSSIKALMSSLPRHCSSQVRDL 60
+C C ET H+ C + +WS L +PR Q+R
Sbjct: 34 VCQICQGGEETILHVLRDCPAMAGIWSRL-------------------VPR---DQIRQF 71
Query: 61 YVAAVVHMVHSIWWARNNVRFSSAKVSSHAVQV------RVHAFIGLSGA----VSTGKC 110
+ A+++ W N+R + + + V R G +G V K
Sbjct: 72 FTASLLE------WIYKNLRERGSWPTVFVMAVWWGWKWRCGNIFGGNGKCRDRVKFIKD 125
Query: 111 IAADAAILDAFRIPPHRRSMREIVSVCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDH 168
+A + AI +AF R R V W P WVK+NTDG+ N G GG+ RDH
Sbjct: 126 LAEEVAIANAFVKGNEVRVSRVERLVSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDH 185
Query: 169 LGTFLGAFVGNLGRCSVFDTEVSGFILVMEHAALHGWYNIWLESDASSALMVFKNPSLV- 227
G ++G F N+G CS E+ G + A G + LE D S ++ F +
Sbjct: 186 NGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVD-SKMVVGFLTTGIAD 244
Query: 228 --PI-LLRNRWHNARTLNVQVISSHIFREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQ 283
P+ L ++ + V SH++RE N D LAN S+ +G L + P
Sbjct: 245 SHPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLSLGLHLLESRPDVVSS 304
Query: 284 VFYED 288
+ +D
Sbjct: 305 ILLDD 309
>emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana]
gi|3402761|emb|CAA20207.1| hypothetical protein
[Arabidopsis thaliana] gi|3080386|emb|CAA18706.1|
hypothetical protein [Arabidopsis thaliana]
gi|7485719|pir||T05150 hypothetical protein F18E5.40 -
Arabidopsis thaliana
Length = 229
Score = 65.1 bits (157), Expect = 2e-09
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 134 VSVCWKPPSAPWVKVNTDGSV-LNNSGACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSG 192
V V WK P +K+N DGS + GG+FR+H FL + ++G + E +
Sbjct: 59 VKVVWKKPENGRIKLNFDGSRGREGQASIGGVFRNHKAEFLLGYSESIGEATSTMAEFAA 118
Query: 193 FILVMEHAALHGWYNIWLESDASSALMVFKNPSLVPILLRNRWHN-----ARTLNVQVIS 247
+E A +G ++WLE DA + + + N+ N LN +
Sbjct: 119 LKRGLELALENGLTDLWLEGDAKIIMDIISRRGRLRCEKTNKHVNYIKVVMPELN-NCVL 177
Query: 248 SHIFREGNVCVDRLANLGHSVVG-EVWLSTLPSDFHQVFYED 288
SH++REGN D+LA LGH +VW P + ++D
Sbjct: 178 SHVYREGNRVADKLAKLGHQFQDPKVWRVQPPEIVLPIMHDD 219
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 63.5 bits (153), Expect = 7e-09
Identities = 46/159 (28%), Positives = 73/159 (44%), Gaps = 6/159 (3%)
Query: 136 VCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGF 193
+ W+ P+ WV +NTDG+ N G GG+ RD G++L F N+G CS E+ G
Sbjct: 506 IAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGV 565
Query: 194 ILVMEHAALHGWYNIWLESDASSALMVFKN---PSLVPILLRNRWHNARTLNVQVISSHI 250
+ A GW + LE D++ + ++ S L H + + V +H+
Sbjct: 566 YYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFLVRLCHGFISKDWIVRITHV 625
Query: 251 FREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYED 288
+RE N D LAN ++ G + L + P + ED
Sbjct: 626 YREANRLADGLANYAFTLPFGFLLLDSCPEHVSSILLED 664
>dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 240
Score = 62.8 bits (151), Expect = 1e-08
Identities = 43/151 (28%), Positives = 70/151 (45%), Gaps = 9/151 (5%)
Query: 138 WKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGFIL 195
W+ P W+K+N DGS +++G + GG++RDH G FL + +G + E++
Sbjct: 79 WRKPEEGWMKLNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALRR 138
Query: 196 VMEHAALHGWYNIWLESDASSALMVFKNPSLVPI-----LLRNRWHNARTLNVQVISSHI 250
+E A +GW +W E D+ + + V + + V L R L+ + SH+
Sbjct: 139 GLELAVRNGWRRVWAEGDSKAVVDVVCDRADVQSEEDLRLCREIAALLPQLDDMAV-SHV 197
Query: 251 FREGNVCVDRLANLGHSVV-GEVWLSTLPSD 280
R GN A LGH VW + P +
Sbjct: 198 RRGGNKVAHGFAELGHRAARPRVWRAAPPDE 228
>ref|XP_470258.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
gi|22773232|gb|AAN06838.1| Unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 210
Score = 62.0 bits (149), Expect = 2e-08
Identities = 41/137 (29%), Positives = 62/137 (44%), Gaps = 8/137 (5%)
Query: 138 WKPPSAPWVKVNTDGSVLNNSGAC--GGLFRDHLGTFLGAFVGNL--GRCSVFDTEVSGF 193
W+ P W+K+N DGS + +GA GG FRDH G F+ + + G S F E++
Sbjct: 47 WRKPEVGWMKLNFDGSRNDATGAASIGGAFRDHEGAFVAGYAERMIVGGASSFTAELAAL 106
Query: 194 ILVMEHAALHGWYNIWLESDASSALMVFKNPSLVPILLRNRWHNARTLNVQVIS----SH 249
+E AA +GW +W E D+ + + V + V R + + SH
Sbjct: 107 RRGLELAARYGWRRVWAEGDSRAVVDVVHGRAGVRSEEDRRQCGEIAALLPALDGVAVSH 166
Query: 250 IFREGNVCVDRLANLGH 266
+ R+ N A LGH
Sbjct: 167 LCRDENKVAHGFAKLGH 183
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|25407930|pir||H84677 hypothetical protein At2g27870
[imported] - Arabidopsis thaliana
gi|15226268|ref|NP_180354.1| hypothetical protein
[Arabidopsis thaliana]
Length = 314
Score = 59.7 bits (143), Expect = 1e-07
Identities = 49/167 (29%), Positives = 74/167 (43%), Gaps = 22/167 (13%)
Query: 136 VCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGF 193
+ W P W K+NTDG+ N G + GG+ RD G + G F N+G CS E+ G
Sbjct: 144 IAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWG- 202
Query: 194 ILVMEHAALHGWYNIW------LESDASSALMV-FKNPSLVPI----LLRNRWHNARTLN 242
+G Y W LE + S ++V F + + L H+ + +
Sbjct: 203 -------VYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRD 255
Query: 243 VQVISSHIFREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYED 288
+V SH++RE N D LAN S+ +G LS +P + +D
Sbjct: 256 WRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDSLRFILLDD 302
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 59.3 bits (142), Expect = 1e-07
Identities = 53/171 (30%), Positives = 81/171 (46%), Gaps = 14/171 (8%)
Query: 134 VSVCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVS 191
+S+ W PPS W K+NTDG+ N G GG+ RD G + FV N+G CS E+
Sbjct: 448 MSIKWTPPSTGWFKLNTDGASRGNPGLATAGGVVRDGEGQWCVGFVLNIGICSAPLAELW 507
Query: 192 GFILVMEHAALHGWYNIWLESDASSALMV------FKNPSLVPILLRNRW-HNARTLNVQ 244
G + A G + LE D S L+V ++ + L+R + +R V+
Sbjct: 508 GVYYGLHIAWERGIRRLELEVD--STLVVGFLQAGIEDSHPLSFLVRLCYGFISRDWIVR 565
Query: 245 VISSHIFREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYEDRCSMPR 294
+ SH++RE N D LAN S+ +G ++P+ + ED + R
Sbjct: 566 I--SHVYREANRLADGLANYAFSLPLGFHACGSMPAPVASIALEDAAGVVR 614
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 58.5 bits (140), Expect = 2e-07
Identities = 50/165 (30%), Positives = 68/165 (40%), Gaps = 6/165 (3%)
Query: 138 WKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGFIL 195
W P WVKVNTDG+ N G + GG+ RD G + G F N+GRCS E+ G
Sbjct: 561 WVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYY 620
Query: 196 VMEHAALHGWYNIWLESDASSALMVFK---NPSLVPILLRNRWHNARTLNVQVISSHIFR 252
+ A + LE D+ + K + S L H + V H++R
Sbjct: 621 GLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYR 680
Query: 253 EGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYEDRCSMPRIR 296
E N D LAN S+ +G +P + ED R R
Sbjct: 681 EANRLADGLANYAFSLSLGFHSFDLVPDAMSSLLREDTLGSTRPR 725
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 58.2 bits (139), Expect = 3e-07
Identities = 67/273 (24%), Positives = 108/273 (39%), Gaps = 32/273 (11%)
Query: 2 CSFCLEQVETSDHLFLRCKFVVTLWSWLCSQLHVGLDF--SSIKALMSSLPRHCSSQVRD 59
C C ET +HL +C F W+ G ++ S + + L H S
Sbjct: 1092 CVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEES 1151
Query: 60 LYVAAVVHMVHSIWWARNNVRFSSAKVSSHAVQVRVHAFIGLSGAVSTGKCIAADAAILD 119
+ A + ++ +W RN++ F + ++ V ++ D +
Sbjct: 1152 DHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKA----------------TEDMDAWN 1195
Query: 120 AFRIP-PHRRSMREIVSVCWKPPSAPWVKVNTDGSVLNNSGAC--GGLFRDHLGTFLGAF 176
+ P P S V W+PPS WVK NTDG+ + G C G + R+H G L
Sbjct: 1196 NRKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLG 1255
Query: 177 VGNL-GRCSVFDTEVSGFILVMEHAALHGWYNIWLESDASSALMVFKN----PSLVPIL- 230
+ L + SV +TEV + + + + ESD+ + + +N PSL P +
Sbjct: 1256 LRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLVSLIQNEMDIPSLAPRIQ 1315
Query: 231 -LRNRWHNARTLNVQVISSHIFREGNVCVDRLA 262
+RN + + Q REGN DR A
Sbjct: 1316 DIRNLLRHFEEVKFQFTR----REGNNVADRTA 1344
>ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 396
Score = 58.2 bits (139), Expect = 3e-07
Identities = 50/169 (29%), Positives = 77/169 (44%), Gaps = 12/169 (7%)
Query: 136 VCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGF 193
+ WK PS W VNTDG+ N G G+ RD G++LG F N+G CS E+ G
Sbjct: 226 IVWKKPSERWATVNTDGASHGNPGFATARGVVRDGEGSWLGGFALNIGVCSAPLAELWGV 285
Query: 194 ILVMEHAALHGWYNIWLESDASSALMVFKN-----PSLVPILLRNRWHNARTLNVQVISS 248
+ A G + LE ++ + ++ L ++ + AR V+V +
Sbjct: 286 YYGLVTAWERGVRRVVLEVESKLVVGFLQSGIRDTHPLAFLVRLCQGFIARDWLVRV--T 343
Query: 249 HIFREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYEDR--CSMPR 294
H++RE N D LAN ++ +G L P+ + + ED S PR
Sbjct: 344 HVYREANRLADGLANYAFTLPIGLQLLDDCPASVNSIMVEDSVGTSFPR 392
>ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana]
Length = 175
Score = 57.0 bits (136), Expect = 6e-07
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 8/168 (4%)
Query: 136 VCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGF 193
V W PS W K+NTDG+ N G GG R+ G + F N+GRCS E+ G
Sbjct: 5 VRWSKPSLGWCKLNTDGASHGNPGLAIAGGALRNEYGEWCFGFALNIGRCSAPLAELWGV 64
Query: 194 ILVMEHAALHGWYNIWLESDASSALMVFKN--PSLVPI-LLRNRWHNARTLNVQVISSHI 250
+ A G + LE D+ + + S P+ L H + + V H+
Sbjct: 65 YYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGHV 124
Query: 251 FREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYEDR--CSMPRI 295
+RE N D LAN + +G ++ PS + +D S+PR+
Sbjct: 125 YREANRLADELANYAFDLPLGYHGFASPPSSLDSILRDDELGTSVPRL 172
>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 308
Score = 56.6 bits (135), Expect = 8e-07
Identities = 43/131 (32%), Positives = 59/131 (44%), Gaps = 5/131 (3%)
Query: 138 WKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGFIL 195
W P WVKVNTDG+ N G + GG+ RD G + G F N+GRCS E+ G
Sbjct: 140 WVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYY 199
Query: 196 VMEHAALHGWYNIWLESDASSALMVFK---NPSLVPILLRNRWHNARTLNVQVISSHIFR 252
+ A + LE D+ + + K + S L HN + V +++R
Sbjct: 200 GLYFAWEKKVPRVELEVDSEAIVGFLKTGISDSHPLSFLVRLCHNFLQKDWLVRIVYVYR 259
Query: 253 EGNVCVDRLAN 263
E N D LAN
Sbjct: 260 EANCLADGLAN 270
>gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thaliana]
gi|18394475|ref|NP_564020.1| hypothetical protein
[Arabidopsis thaliana] gi|9665118|gb|AAF97302.1|
Hypothetical protein [Arabidopsis thaliana]
Length = 272
Score = 55.8 bits (133), Expect = 1e-06
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 10/156 (6%)
Query: 118 LDAFRIPPHR-----RSMREIVSVCWKPPSAPWVKVNTDGSVLNNS--GACGGLFRDHLG 170
LD ++ H+ R+ RE + W PP W K+NTDG+ N GG+ RD G
Sbjct: 79 LDVWKAHVHKMGVTTRTAREERLIAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDG 138
Query: 171 TFLGAFVGNLGRCSVFDTEVSGFILVMEHAALHGWYNIWLESDASSALMVFK---NPSLV 227
+ F N+G CS E+ G + A G + +E D+ + + + S
Sbjct: 139 NWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHP 198
Query: 228 PILLRNRWHNARTLNVQVISSHIFREGNVCVDRLAN 263
L H + + V SH++RE N D LAN
Sbjct: 199 LSFLVRLCHGLLSKDWSVRISHVYREANRLADGLAN 234
>gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D86310 protein
F1L3.4 [imported] - Arabidopsis thaliana
Length = 253
Score = 55.8 bits (133), Expect = 1e-06
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 10/156 (6%)
Query: 118 LDAFRIPPHR-----RSMREIVSVCWKPPSAPWVKVNTDGSVLNNS--GACGGLFRDHLG 170
LD ++ H+ R+ RE + W PP W K+NTDG+ N GG+ RD G
Sbjct: 60 LDVWKAHVHKMGVTTRTAREERLIAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDG 119
Query: 171 TFLGAFVGNLGRCSVFDTEVSGFILVMEHAALHGWYNIWLESDASSALMVFK---NPSLV 227
+ F N+G CS E+ G + A G + +E D+ + + + S
Sbjct: 120 NWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHP 179
Query: 228 PILLRNRWHNARTLNVQVISSHIFREGNVCVDRLAN 263
L H + + V SH++RE N D LAN
Sbjct: 180 LSFLVRLCHGLLSKDWSVRISHVYREANRLADGLAN 215
>ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 411
Score = 54.3 bits (129), Expect = 4e-06
Identities = 49/163 (30%), Positives = 70/163 (42%), Gaps = 33/163 (20%)
Query: 138 WKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGFIL 195
W P WVK+NTDG+ N G GG+ RD G + G F N+GRCS E+
Sbjct: 244 WGSPGVGWVKLNTDGASRGNPGLATAGGVLRDEEGNWRGGFAANIGRCSAPLAEL----- 298
Query: 196 VMEHAALHGWYNIW------LESDASSALMV-FKNPSLVP----ILLRNRWHNARTLNVQ 244
+G Y W LE + S ++V F + L + + + +
Sbjct: 299 ---WEVYYGLYFAWAIRIPQLELEVDSEIVVGFLKTGISDTHPLFFLVRLCYGFLSKDWR 355
Query: 245 VISSHIFREGNVCVDRLANLGHSVVGEVWLSTLPSDFHQVFYE 287
V +H++RE N ++ LAN S LPSD H FY+
Sbjct: 356 VQITHVYREAN-HLNGLANYAFS---------LPSDLH--FYD 386
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 53.9 bits (128), Expect = 5e-06
Identities = 33/93 (35%), Positives = 45/93 (47%), Gaps = 16/93 (17%)
Query: 136 VCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGF 193
V WKPP WVK+NTDG+ N G GG+ RD +G + G F ++G CS E+ G
Sbjct: 839 VAWKPPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWG- 897
Query: 194 ILVMEHAALHGWYNIW------LESDASSALMV 220
+G Y W +E + S L+V
Sbjct: 898 -------VYYGLYMAWERRFTRVELEVDSELVV 923
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 53.5 bits (127), Expect = 7e-06
Identities = 42/132 (31%), Positives = 60/132 (44%), Gaps = 7/132 (5%)
Query: 138 WKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGFIL 195
W+ PS WVK+ TDG+ N G A GG R+ G +LG F N+G C+ E+ G
Sbjct: 1063 WQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYY 1122
Query: 196 VMEHAALHGWYNIWLESDASSALMVF----KNPSLVPILLRNRWHNARTLNVQVISSHIF 251
+ A G+ + L+ D + N + L+R T + V SH++
Sbjct: 1123 GLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVR-LCQGFFTRDWLVRVSHVY 1181
Query: 252 REGNVCVDRLAN 263
RE N D LAN
Sbjct: 1182 REANRLADGLAN 1193
>dbj|BAD53882.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|53791828|dbj|BAD53894.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 217
Score = 53.1 bits (126), Expect = 9e-06
Identities = 47/151 (31%), Positives = 68/151 (44%), Gaps = 20/151 (13%)
Query: 124 PPHRRSMREIVSVCWKPPSAPWVKVNTDGSVLNNS---GACGGLFRDHLGTFLGAFVGNL 180
PP R I V W PP WVK+N DGSV N+ + GG+ RD G L AF
Sbjct: 35 PPTR-----ITLVRWTPPRHGWVKLNFDGSVHNDGSGRASIGGVIRDDHGRVLLAFAERT 89
Query: 181 GRCSVFDTEVSGFILVMEHAALHGWYN-IWLESDASSALMVFKNPS----LVPILLRN-R 234
++ E I ++ A HGW + + +E D + + + + S + P +L +
Sbjct: 90 PHATIGVVEARALIRGLQLALDHGWNDRLLVEGDDLTLVRLLRCESTHTRIPPAMLDDIL 149
Query: 235 W--HNARTLNVQVISSHIFREGNVCVDRLAN 263
W + R VQ H +REGN D L +
Sbjct: 150 WLLDSFRVCEVQ----HAYREGNQVADALCH 176
>pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana
gi|6630448|gb|AAF19536.1| F23N19.5 [Arabidopsis
thaliana]
Length = 233
Score = 52.8 bits (125), Expect = 1e-05
Identities = 47/168 (27%), Positives = 72/168 (41%), Gaps = 8/168 (4%)
Query: 136 VCWKPPSAPWVKVNTDGSVLNNSG--ACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGF 193
V W PS W K+NTDG+ N G GG R+ G + F N+GRC E+ G
Sbjct: 63 VRWSKPSLGWCKLNTDGASHGNPGLATAGGALRNEYGEWCFGFALNIGRCLAPLAELWGV 122
Query: 194 ILVMEHAALHGWYNIWLESDASSALMVFKN--PSLVPI-LLRNRWHNARTLNVQVISSHI 250
+ A G + LE D+ + + S P+ L H + + V H+
Sbjct: 123 YYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGHV 182
Query: 251 FREGNVCVDRLANLGHSV-VGEVWLSTLPSDFHQVFYEDR--CSMPRI 295
+RE N D LAN + +G ++ P+ + +D S+PR+
Sbjct: 183 YREANRLADGLANYAFDLPLGYHAFASPPNSLDSILRDDELGISVPRL 230
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.137 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,328,237
Number of Sequences: 2540612
Number of extensions: 19671968
Number of successful extensions: 51194
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 51025
Number of HSP's gapped (non-prelim): 190
length of query: 298
length of database: 863,360,394
effective HSP length: 127
effective length of query: 171
effective length of database: 540,702,670
effective search space: 92460156570
effective search space used: 92460156570
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 74 (33.1 bits)
Medicago: description of AC146708.4