BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146705.12 - phase: 0 /pseudo
(811 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF24529.1| F7F22.15 [Arabidopsis thaliana] 1184 0.0
gb|AAF24531.1| F7F22.17 [Arabidopsis thaliana] 1104 0.0
dbj|BAB02630.1| retroelement pol polyprotein-like [Arabidopsis t... 1093 0.0
gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana] 959 0.0
gb|AAR00600.1| putative reverse transcriptase [Oryza sativa (jap... 825 0.0
emb|CAD39877.2| OSJNBb0058J09.16 [Oryza sativa (japonica cultiva... 723 0.0
gb|AAF63114.1| Hypothetical protein [Arabidopsis thaliana] gi|25... 651 0.0
emb|CAE03895.1| OSJNBb0026I12.3 [Oryza sativa (japonica cultivar... 647 0.0
gb|AAT38730.1| putative reverse transcriptase [Solanum demissum] 620 e-176
gb|AAD23707.1| putative retroelement pol polyprotein [Arabidopsi... 594 e-168
pir||T12085 reverse transcriptase homolog - fava bean (fragment)... 568 e-160
emb|CAD39928.2| OSJNBa0091C12.6 [Oryza sativa (japonica cultivar... 530 e-149
gb|AAG52026.1| polyprotein, putative; 77260-80472 [Arabidopsis t... 524 e-147
emb|CAD40178.2| OSJNBa0061A09.17 [Oryza sativa (japonica cultiva... 522 e-146
gb|AAM15254.1| putative retroelement pol polyprotein [Arabidopsi... 489 e-136
pir||D84513 probable retroelement pol polyprotein [imported] - A... 471 e-131
gb|AAM15221.1| putative retroelement pol polyprotein [Arabidopsi... 466 e-129
gb|AAM94940.1| conserved hypothetical protein [Arabidopsis thali... 444 e-123
emb|CAD39882.2| OSJNBb0067G11.5 [Oryza sativa (japonica cultivar... 433 e-119
pir||C84500 probable retroelement pol polyprotein [imported] - A... 429 e-118
>gb|AAF24529.1| F7F22.15 [Arabidopsis thaliana]
Length = 1862
Score = 1184 bits (3064), Expect = 0.0
Identities = 554/826 (67%), Positives = 680/826 (82%), Gaps = 20/826 (2%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N A+RKDHFPLPFIDQMLERLA H ++C+LDGYSGFFQIPIHPNDQEKTTFTCP+GTFAY
Sbjct: 1036 NAASRKDHFPLPFIDQMLERLANHPYYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAY 1095
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
+RMPFGLCNAPATFQRCM SIFSD +++++EVFMDDFSV+G +F CL NL +VL RCE+
Sbjct: 1096 KRMPFGLCNAPATFQRCMTSIFSDLIKEMVEVFMDDFSVYGPSFSSCLLNLGRVLTRCEE 1155
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
NLVLNWEKCHFMV+EGIVLGH + ++GIEVD+ K+E++ ++ PP +VK+IRSFLGHAGF
Sbjct: 1156 TNLVLNWEKCHFMVKEGIVLGHKISEKGIEVDKGKVEVMMQLQPPKTVKDIRSFLGHAGF 1215
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRFIKDFS I +PLT LL K+ +F FDD CL++F +K+AL++AP+++ P+W+ PFEIM
Sbjct: 1216 YRRFIKDFSKIARPLTRLLCKETEFKFDDDCLKSFQTIKDALVSAPVVRAPNWDYPFEIM 1275
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
CDASDYAVGAVLGQ+ DKK+H IYYAS+TLD AQ YATTEKELLAVV+A +KFR YLVG
Sbjct: 1276 CDASDYAVGAVLGQKIDKKLHVIYYASRTLDDAQGRYATTEKELLAVVFAFEKFRSYLVG 1335
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
SK+ VYTDH+A+++L KKD KPRL+RWILLLQEFD+EI DKKG+EN ADHLSR+R
Sbjct: 1336 SKVTVYTDHAALRHLYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGAADHLSRMRI-- 1393
Query: 361 KDELPLDDSFPDDQLFLL-----------------AQTDAPWYADFVNFLAAGVLPPELN 403
++ L +DDS P++QL ++ + ++PWYAD VN+LA GV PP L
Sbjct: 1394 EEPLLIDDSMPEEQLMVVEFFGKSYSGKEFHQLNAVEGESPWYADHVNYLACGVEPPNLT 1453
Query: 404 YQQKKKFFNDLKHYYWDEPYLFRRGSDGIFRRCIPENEVSSILTHCHSSSYGGHASTQKT 463
++KKFF D+ HYYWDEPYL+ D I+RRC+ E+EV IL HCH S+YGGH +T KT
Sbjct: 1454 SYERKKFFRDIHHYYWDEPYLYTLCKDKIYRRCVSEDEVEGILLHCHGSAYGGHFATFKT 1513
Query: 464 SFKILHSGFWWPSLFKDVHLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGIDFMG 523
KIL +GFWWP++FKD F+SKCD CQR G+I++RNEMP N ILEVEIFDVWGIDFMG
Sbjct: 1514 VSKILQAGFWWPTMFKDAQEFVSKCDSCQRKGNISRRNEMPQNPILEVEIFDVWGIDFMG 1573
Query: 524 PFPSSFGNQYILVAVDYVSKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSH 583
PFPSS+GN+YILVAVDYVSKWVEAIASPTNDA+VV+K+FK +IFPRFGVPRVVISDGG H
Sbjct: 1574 PFPSSYGNKYILVAVDYVSKWVEAIASPTNDAKVVLKLFKTIIFPRFGVPRVVISDGGKH 1633
Query: 584 FISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDA 643
FI++ FE LL+K GV+HK+ATPY+PQTSGQVE+SNR+IK ILEKTV +R DWS KLDDA
Sbjct: 1634 FINKVFENLLKKHGVKHKVATPYNPQTSGQVEISNREIKTILEKTVGITRKDWSAKLDDA 1693
Query: 644 LWAYRTAYKTPIGMTPFKLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNEL 703
LWAYRT +KTPIG TPF L+YGKSCHLPVELE+KA WA++ LN D A +KR +QL++L
Sbjct: 1694 LWAYRTTFKTPIGTTPFNLLYGKSCHLPVELEYKAMWAVKLLNFDIKTAEEKRLIQLSDL 1753
Query: 704 EELRMDAYENARIYKERTKTWHDKKIIKRHFKSGDLVLLFNSRLKLFPGKLRSRWSGPFQ 763
+E+R++AYE+++IYKERTK +HDKKII + F+ GD VLLFNSRLKLFPGKL+SRWSGPF
Sbjct: 1754 DEIRLEAYESSKIYKERTKLFHDKKIITKDFQVGDQVLLFNSRLKLFPGKLKSRWSGPFC 1813
Query: 764 VRTVYPYGAIEIFSEETGSFTVNGQRLKIYNTGEVNEVVADFTLSD 809
+ V PYGA+ + + ++G FTVNGQRLK Y ++ V L +
Sbjct: 1814 ITEVRPYGAVTL-TGKSGDFTVNGQRLKKYLADQILPEVTSVHLQE 1858
>gb|AAF24531.1| F7F22.17 [Arabidopsis thaliana]
Length = 1799
Score = 1104 bits (2855), Expect = 0.0
Identities = 528/809 (65%), Positives = 650/809 (80%), Gaps = 35/809 (4%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N A+RKDHFPLPFIDQMLERLA H ++C+LDGY+GFFQIPIHPNDQEKTTFTCP+GTFAY
Sbjct: 1022 NAASRKDHFPLPFIDQMLERLANHPYYCFLDGYNGFFQIPIHPNDQEKTTFTCPYGTFAY 1081
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
+RMPFGLCNAPATFQRCM SIFSD +E+++EVFMDDFSV+G +F CL NL +VL RCE+
Sbjct: 1082 KRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGPSFSSCLLNLGRVLTRCEE 1141
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
NLVLNWEKCHFMV+EGIVLGH + ++GIEVD+ K+E++ ++ PP +VK+IRSFLGHAGF
Sbjct: 1142 TNLVLNWEKCHFMVKEGIVLGHKISEKGIEVDKGKVEVMMQLQPPKTVKDIRSFLGHAGF 1201
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRFIKDFS I +PLT LL K+ +F FDD CL++F +K+AL++AP+++ P+W+ PFEIM
Sbjct: 1202 YRRFIKDFSKIARPLTRLLCKETEFKFDDDCLKSFQTIKDALVSAPVVRAPNWDYPFEIM 1261
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
CDASDYAVGAVLGQ+ DKK+H IYYAS+TLD AQ YATTEKELL VV+A +KFR YLVG
Sbjct: 1262 CDASDYAVGAVLGQKIDKKLHVIYYASRTLDDAQGRYATTEKELLVVVFAFEKFRSYLVG 1321
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
SK+ VYTDH+A+++L KKD KPRL+RWILLLQEFD+EI DKKG+EN ADHLSR+R
Sbjct: 1322 SKVTVYTDHAALRHLYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGAADHLSRMR--I 1379
Query: 361 KDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWD 420
++ L +DDS P++QL ++ +F +G K F+ L +
Sbjct: 1380 EEPLLIDDSMPEEQLMVV---------EFFGKSYSG------------KEFHQLNAVEGE 1418
Query: 421 EPYLFRRGSDGIFRRCIPENEVSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKD 480
P+ RC+ E+EV IL HCH S+YGGH +T KT KIL +GFWWP++FKD
Sbjct: 1419 SPW-----------RCVSEDEVEGILLHCHGSAYGGHFATFKTVSKILQAGFWWPTMFKD 1467
Query: 481 VHLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDY 540
F+SKCD CQR G+I++RNEMP N ILEVEIFDVWGIDFMGPFPSS+GN+YILVAVDY
Sbjct: 1468 AQEFVSKCDSCQRKGNISRRNEMPQNPILEVEIFDVWGIDFMGPFPSSYGNKYILVAVDY 1527
Query: 541 VSKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRH 600
VSKWVEAIASPTNDA+VV+K+FK +IFPRFGVPRVVISDGG HFI++ FE LL+K GV+H
Sbjct: 1528 VSKWVEAIASPTNDAKVVLKLFKTIIFPRFGVPRVVISDGGKHFINKVFENLLKKHGVKH 1587
Query: 601 KIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPF 660
K+ATPY+PQTSGQVE+SNR+IK ILEKTV +R DWS KLDDALWAYRTA+KTPIG TPF
Sbjct: 1588 KVATPYNPQTSGQVEISNREIKTILEKTVGITRKDWSAKLDDALWAYRTAFKTPIGTTPF 1647
Query: 661 KLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKER 720
L+YGKSCHLPVELE+KA WA++ LN D A +KR +QL++L+E+R++AYE+++IYKER
Sbjct: 1648 NLLYGKSCHLPVELEYKAMWAVKLLNFDIKTAEEKRLIQLSDLDEIRLEAYESSKIYKER 1707
Query: 721 TKTWHDKKIIKRHFKSGDLVLLFNSRLKLFPGKLRSRWSGPFQVRTVYPYGAIEIFSEET 780
TK +HDKKII + F+ G VLLFNSRLKLFPGKL+SRWSGPF + V PYGA+ + + ++
Sbjct: 1708 TKLFHDKKIITKDFQFGVQVLLFNSRLKLFPGKLKSRWSGPFCITEVRPYGAVTL-AGKS 1766
Query: 781 GSFTVNGQRLKIYNTGEVNEVVADFTLSD 809
G FTVNGQRLK Y ++ V L +
Sbjct: 1767 GDFTVNGQRLKKYLADQILPEVTSVHLQE 1795
>dbj|BAB02630.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 897
Score = 1093 bits (2827), Expect = 0.0
Identities = 520/798 (65%), Positives = 643/798 (80%), Gaps = 35/798 (4%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N A+RKDHFPLPFIDQMLERLA H ++C+LDGYSGFFQIPIHPNDQEKTTFTCP+GTFAY
Sbjct: 120 NAASRKDHFPLPFIDQMLERLANHPYYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAY 179
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
+RMPFGLCNAPATFQRCM SIFSD +E+++EVFMDDFS +G +F CL NL +VL RCE+
Sbjct: 180 KRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSGYGPSFSSCLLNLGRVLTRCEE 239
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
NLVLNWEKCHFMV+EGIVLGH + ++GIEVD+ K+E++ ++ PP +VKEIRSFLGHAGF
Sbjct: 240 TNLVLNWEKCHFMVKEGIVLGHKISEKGIEVDKGKVEVMMQLQPPKTVKEIRSFLGHAGF 299
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRFIKDFS I +PLT LL K+ +F FD+ CL++F +K+AL++AP+++ P+W+ PFEIM
Sbjct: 300 YRRFIKDFSKIVRPLTRLLCKETEFEFDEDCLKSFQTIKDALVSAPVVRAPNWDYPFEIM 359
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
CDASDY VGAVLGQ+ DKK+H IYYAS+TLD AQ YATTEKELLAVV+A +KFR YLVG
Sbjct: 360 CDASDYVVGAVLGQKIDKKLHVIYYASRTLDDAQGRYATTEKELLAVVFAFEKFRSYLVG 419
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
SK+ VYTDH+A+++L KKD KPRL+RWILLLQEFD+EI DKKG+EN ADHL R+R
Sbjct: 420 SKVTVYTDHAALRHLYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGAADHLLRMR--I 477
Query: 361 KDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWD 420
++ LP+DDS P++QL ++ +F +G K F+ L +
Sbjct: 478 EEPLPIDDSMPEEQLMVV---------EFFGKSYSG------------KEFHQLNDVEGE 516
Query: 421 EPYLFRRGSDGIFRRCIPENEVSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKD 480
P+ RC+ E+EV IL HCH S+YGGH +T KT KIL +GFWWP++FKD
Sbjct: 517 SPW-----------RCVSEDEVEGILLHCHCSAYGGHFATFKTVSKILQAGFWWPTMFKD 565
Query: 481 VHLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDY 540
F+SKCD CQR +I++ NEMP N I+EVEIFDVWGIDFMG FPSS+GN+YILVA+DY
Sbjct: 566 AQEFVSKCDSCQRKDNISRINEMPQNPIVEVEIFDVWGIDFMGLFPSSYGNKYILVAIDY 625
Query: 541 VSKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRH 600
VSKWVEAIA PTNDA+VV+K+FK +IFPRFGVPRVVISDGG HFI++ FE LL+K GV+H
Sbjct: 626 VSKWVEAIAIPTNDAKVVLKLFKTIIFPRFGVPRVVISDGGKHFINKVFENLLKKHGVKH 685
Query: 601 KIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPF 660
K+ATPYHPQTSGQVE+S+R+IK ILEKTV +R DWS KLDDALWAYRTA+KTPIG TPF
Sbjct: 686 KVATPYHPQTSGQVEISDREIKTILEKTVGITRKDWSAKLDDALWAYRTAFKTPIGTTPF 745
Query: 661 KLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKER 720
++YGKSCHLPVELE+KA WA++ LN D A +KR +QL++L+E+R++AYE+++IYKER
Sbjct: 746 NILYGKSCHLPVELEYKAMWAVKLLNFDIKTAEEKRLIQLSDLDEIRLEAYESSKIYKER 805
Query: 721 TKTWHDKKIIKRHFKSGDLVLLFNSRLKLFPGKLRSRWSGPFQVRTVYPYGAIEIFSEET 780
TK +HDKKII + F+ GD VLLFNSRLKLFPGKL+SRWSGPF + V PYGA+ + + ++
Sbjct: 806 TKLFHDKKIITKDFQVGDQVLLFNSRLKLFPGKLKSRWSGPFCITKVRPYGAVTL-AGKS 864
Query: 781 GSFTVNGQRLKIYNTGEV 798
G FTVNGQRLK Y ++
Sbjct: 865 GDFTVNGQRLKKYLADQI 882
>gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana]
Length = 1586
Score = 959 bits (2478), Expect = 0.0
Identities = 472/793 (59%), Positives = 574/793 (71%), Gaps = 113/793 (14%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N A+RK+HFPLPFID MLERLA H ++C+LD YSGFFQIPIHPNDQ KTTFTCP+GTFAY
Sbjct: 887 NVASRKEHFPLPFIDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAY 946
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
+RMPFGLCNAPATFQRCM SIFSD +E+++EVFMDDFSV+GS+F CL NL +VL+RCE+
Sbjct: 947 KRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEE 1006
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
NLVLNWEKCHFMVREGIVLG + + GIEVD+AKI+++ ++ PP +VK+IRSFLGHAGF
Sbjct: 1007 TNLVLNWEKCHFMVREGIVLGRKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSFLGHAGF 1066
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YR FIKDFS + +PLT LL K+ +F FDD CL AF +KEALITAPI+Q P+W+ PFEI+
Sbjct: 1067 YRIFIKDFSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPFEII 1126
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
T+D AQV YATTEKELLAVV+A +KFR YLVG
Sbjct: 1127 ----------------------------TMDDAQVRYATTEKELLAVVFAFEKFRSYLVG 1158
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
SK+ +YTDH+A++++ KKD KPRL+RWILLLQEFD+EI DKKG+EN
Sbjct: 1159 SKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEIVDKKGIEN------------- 1205
Query: 361 KDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWD 420
PWYAD VN+L +G PP L+ +KKKFF D+ H+YWD
Sbjct: 1206 --------------------EKLPWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWD 1245
Query: 421 EPYLFRRGSDGIFRRCIPENEVSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKD 480
EPYL+ D I+R C+ E+E+ IL HCH +YGGH +T KT KIL +
Sbjct: 1246 EPYLYTLCKDKIYRTCVSEDEIEGILLHCHGFAYGGHFATFKTMSKILQA---------- 1295
Query: 481 VHLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDY 540
EVE FDVWGIDFMGPFPSS+GN+YILVA+DY
Sbjct: 1296 -----------------------------EVENFDVWGIDFMGPFPSSYGNKYILVAIDY 1326
Query: 541 VSKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRH 600
VSKWVEAIAS TNDA+VV+K+FK +IFPRFGVPR+VISDGG HFI++ FE LL+K GV+H
Sbjct: 1327 VSKWVEAIASHTNDARVVLKLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKH 1386
Query: 601 KIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPF 660
K VE+SNR+IKAILEKTV ++R DWS KL+D LWAYRTA+KTPIG TPF
Sbjct: 1387 K------------VEISNREIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPF 1434
Query: 661 KLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKER 720
L+YGKSCHLPVELE+KA WA++ LN D A +KR +QLN+L ++R++AYE+++IYKER
Sbjct: 1435 NLLYGKSCHLPVELEYKAMWAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSKIYKER 1494
Query: 721 TKTWHDKKIIKRHFKSGDLVLLFNSRLKLFPGKLRSRWSGPFQVRTVYPYGAIEIFSEET 780
TK++HDKKI+ R FK GD VLLFNSRL+LFPGKL+SRWSGPF V V PYGAI + + +
Sbjct: 1495 TKSFHDKKIVSRDFKVGDQVLLFNSRLRLFPGKLKSRWSGPFSVTAVRPYGAITL-AGKN 1553
Query: 781 GSFTVNGQRLKIY 793
G FTVNGQRLK Y
Sbjct: 1554 GDFTVNGQRLKKY 1566
>gb|AAR00600.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50901488|ref|XP_463177.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 743
Score = 825 bits (2132), Expect = 0.0
Identities = 427/794 (53%), Positives = 528/794 (65%), Gaps = 103/794 (12%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
NKAT++DHFPLPFID+MLER+A HS FC+LDGYSG+ QIPIHP DQ KTTFTCP+GT+AY
Sbjct: 30 NKATKEDHFPLPFIDEMLERMANHSFFCFLDGYSGYHQIPIHPEDQSKTTFTCPYGTYAY 89
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
RRM FGLCNAPA+FQRCMM S F D + ++ +V
Sbjct: 90 RRMSFGLCNAPASFQRCMM----------------------SIFSDMIEDIMEVF----- 122
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
+ + V G FD+ + PP ++K IRSFLGHAGF
Sbjct: 123 -------------MDDFSVYGK-TFDQ--------------IRPPVNIKGIRSFLGHAGF 154
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRFIKDFS+I +PLT+LL KDA F DD+CL++F LK+AL++APIIQPPDW L FEIM
Sbjct: 155 YRRFIKDFSTIARPLTNLLAKDAPFESDDACLKSFEVLKKALVSAPIIQPPDWTLSFEIM 214
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
CDASD+AVGA FR YLV
Sbjct: 215 CDASDFAVGA-------------------------------------------FRSYLVR 231
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
+K+I+YTDH+A+KY L KKDAKPRL+RWILLLQEFDLEIKDKKGVEN VADHLSRL+ TN
Sbjct: 232 AKVIIYTDHAALKYPLTKKDAKPRLLRWILLLQEFDLEIKDKKGVENSVADHLSRLQITN 291
Query: 361 KDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWD 420
E P++D DD L + ++ PWYA+ VN++ +PP N + K + + + WD
Sbjct: 292 MPEQPINDFLRDDMLMTVRDSN-PWYANIVNYMVFKYIPPGKNQRNLKY---ESRRHIWD 347
Query: 421 EPYLFRRGSDGIFRRCIPENEVSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKD 480
EPYL+R SDG+ RRC+P E I+ CH+S YGGH +T KI SGF+WP++++D
Sbjct: 348 EPYLYRVCSDGLLRRCVPTEEGLKIIERCHASPYGGHYGVFRTQAKIWQSGFFWPTMYED 407
Query: 481 VHLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDY 540
F+ +C CQR G IT R+ MPL L+VEIFDVWGIDFMGPFP S +YILVAVDY
Sbjct: 408 SKEFVRRCTSCQRQGGITARDAMPLTYNLQVEIFDVWGIDFMGPFPKSRNCEYILVAVDY 467
Query: 541 VSKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRH 600
VSKWV+A+ DA+ KMF ++IFP+F PR+VISDGGSHFI + F LL+++G +H
Sbjct: 468 VSKWVKAMPCSATDARHAKKMFIEIIFPKFDTPRMVISDGGSHFIDKTFRDLLREMGAKH 527
Query: 601 KIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPF 660
+ATPYHPQTSGQ E SN+QIK IL+KTV+ T W ++L DAL AY AYKTPI M+P+
Sbjct: 528 NVATPYHPQTSGQAETSNKQIKNILQKTVNKMGTGWKDRLPDALCAYWIAYKTPIRMSPY 587
Query: 661 KLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKER 720
++VY K C LPVELEH+AYWAIRN N+D AG+ RK+Q+ ELEE R AY NA+IYKER
Sbjct: 588 QIVYRKPCRLPVELEHRAYWAIRNWNMDFEGAGEWRKMQIAELEEWREKAYHNAKIYKER 647
Query: 721 TKTWHDKKIIKRHFKSGDLVLLFNSRLKLF-PGKLRSRWSGPFQVRTVYPYGAIEIFSEE 779
TK WHDK+ + FK GD VL+FNSR+KLF GKLRS+W GPF V +GAI + E
Sbjct: 648 TKRWHDKRKKIKKFKPGDKVLMFNSRVKLFGHGKLRSKWEGPFDVIDTSSHGAITLRDEL 707
Query: 780 TGSFTVNGQRLKIY 793
F VNGQRLKI+
Sbjct: 708 GNIFKVNGQRLKIF 721
>emb|CAD39877.2| OSJNBb0058J09.16 [Oryza sativa (japonica cultivar-group)]
gi|50922333|ref|XP_471527.1| OSJNBb0058J09.16 [Oryza
sativa (japonica cultivar-group)]
Length = 1045
Score = 723 bits (1867), Expect = 0.0
Identities = 356/566 (62%), Positives = 429/566 (74%), Gaps = 22/566 (3%)
Query: 161 KMLPPTSVKEIRSFLGHAGFYRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKE 220
++ PP ++K I SFLGHAGFYRRFIKDFS+I +PLT+LL KDA F F+D+CL++F LK+
Sbjct: 500 RLPPPVNIKGICSFLGHAGFYRRFIKDFSTIARPLTNLLAKDAPFEFNDACLRSFKILKK 559
Query: 221 ALITAPIIQPPDWNLPFEIMCDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATT 280
AL++APIIQPPDW LPFEIMCDASD+AVGAVLGQ DKK HAI YASKTL GAQ+NYATT
Sbjct: 560 ALVSAPIIQPPDWTLPFEIMCDASDFAVGAVLGQTKDKKHHAICYASKTLTGAQLNYATT 619
Query: 281 EKELLAVVYAIDKFRQYLVGSKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIK 340
EKELL VV+AIDKFR YLVG+K+I+YTDH+A+KYLL KKDAKPRL+RWILLLQEFD+EIK
Sbjct: 620 EKELLTVVFAIDKFRSYLVGAKVIIYTDHAALKYLLTKKDAKPRLLRWILLLQEFDIEIK 679
Query: 341 DKKGVENVVADHLSRLRETNKDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVLPP 400
DKKGVEN VADHLSRL TN E P++D DD L +PP
Sbjct: 680 DKKGVENYVADHLSRLHITNMQEQPINDLLRDDMLMTC-------------------IPP 720
Query: 401 ELNYQQKKKFFNDLKHYYWDEPYLFRRGSDGIFRRCIPENEVSSILTHCHSSSYGGHAST 460
N Q+K K+ + + WDEPYL+R SDG+ RRC+P +E I+ CH+S YGGH
Sbjct: 721 GEN-QRKLKY--ESHRHIWDEPYLYRVCSDGLLRRCVPTDEGLKIIERCHASPYGGHYGA 777
Query: 461 QKTSFKILHSGFWWPSLFKDVHLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGID 520
+T KI SGF+WP++++D FI +C CQR G IT R+ MPL L+VEIFDVWGID
Sbjct: 778 FRTQAKIWQSGFFWPTMYEDSKEFIRRCTSCQRQGGITARDAMPLTYNLQVEIFDVWGID 837
Query: 521 FMGPFPSSFGNQYILVAVDYVSKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDG 580
FMGPFP S +YILVAVDYVSKWVEA+ DA+ KMF + IFPRFG R+VISD
Sbjct: 838 FMGPFPKSRNCEYILVAVDYVSKWVEAMPCSAADARHAKKMFTETIFPRFGTRRMVISDR 897
Query: 581 GSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKL 640
G HFI + F LL+++ +H +ATPYHPQTSGQ E SN+QIK IL+KTV+ T+W ++L
Sbjct: 898 GFHFIDKTFRDLLREMEAKHNVATPYHPQTSGQAETSNKQIKNILQKTVNKMGTEWKDRL 957
Query: 641 DDALWAYRTAYKTPIGMTPFKLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQL 700
DALWAYRTAYKTPIGM+P+++VYGKSC LPVELEH+AYWAIRN N+D AG+ RK+Q+
Sbjct: 958 QDALWAYRTAYKTPIGMSPYQIVYGKSCRLPVELEHRAYWAIRNSNMDFEGAGEWRKMQI 1017
Query: 701 NELEELRMDAYENARIYKERTKTWHD 726
ELEE R AY NA+IYKERTK WHD
Sbjct: 1018 AELEEWREMAYHNAKIYKERTKRWHD 1043
>gb|AAF63114.1| Hypothetical protein [Arabidopsis thaliana] gi|25405147|pir||B96502
hypothetical protein F28H19.8 [imported] - Arabidopsis
thaliana
Length = 640
Score = 651 bits (1679), Expect = 0.0
Identities = 307/472 (65%), Positives = 379/472 (80%), Gaps = 18/472 (3%)
Query: 136 EGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGFYRRFIKDFSSITKPL 195
EGIVLGH + +GIEVD+AKI+++ ++ P +VK+IRSFLGHAGFYRRFIKDFS I +PL
Sbjct: 170 EGIVLGHKISGKGIEVDKAKIDVMVRLQPLKTVKDIRSFLGHAGFYRRFIKDFSKIARPL 229
Query: 196 TSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIMCDASDYAVGAVLGQR 255
T LL K+A+F FD+ CL+AF +KEAL+ API+Q P+WN PFEIMCDASDYAVGAVLGQR
Sbjct: 230 TRLLCKEAEFDFDEDCLKAFHSIKEALVLAPIVQAPNWNHPFEIMCDASDYAVGAVLGQR 289
Query: 256 NDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVGSKIIVYTDHSAIKYL 315
DKK+H IYYAS+TLD Q YATTEKELL VV+A +KFR YLVGSK+ VYTDH+A+K++
Sbjct: 290 IDKKLHVIYYASRTLDDTQSRYATTEKELLVVVFAFEKFRSYLVGSKVTVYTDHAALKHI 349
Query: 316 LNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETNKDELPLDDSFPDDQL 375
KKD KPRL+RWIL LQEFD+EI DK+G EN VADHLSR+R T + +P+DDS P++QL
Sbjct: 350 YAKKDTKPRLLRWILFLQEFDMEIVDKRGSENGVADHLSRMRMT--EAVPIDDSMPEEQL 407
Query: 376 FLLAQT---------------DAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWD 420
+ + PWY D VN+L AG++P EL+ QKKKFF D+ HYYWD
Sbjct: 408 LAVGTSFDKFKIETMCATRSGKLPWYVDLVNYLTAGIVPSELSSYQKKKFFRDINHYYWD 467
Query: 421 EPYLFRRGSDGIFRRCIPENEVSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKD 480
EP L+++G DG+FRRCI E EV +L CH+S YGGH +T KT K+L +G WWPS+FKD
Sbjct: 468 EPVLYKKGVDGLFRRCIAEEEVQGVLELCHNSPYGGHFATFKTVQKVLQAGLWWPSMFKD 527
Query: 481 VHLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGIDFMGPF-PSSFGNQYILVAVD 539
H I++CD+CQR G+I++RNEMP N ILEVE+FDVWGIDFMGPF P+S+GN+YILVAVD
Sbjct: 528 AHEHITRCDRCQRVGNISRRNEMPQNPILEVEVFDVWGIDFMGPFEPASYGNKYILVAVD 587
Query: 540 YVSKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEK 591
YVSKWVEAIASPTND++VV+K+FK +IFPRFG+PRVVISDGGSHFI++ FEK
Sbjct: 588 YVSKWVEAIASPTNDSKVVLKLFKTIIFPRFGIPRVVISDGGSHFINKVFEK 639
>emb|CAE03895.1| OSJNBb0026I12.3 [Oryza sativa (japonica cultivar-group)]
gi|50921891|ref|XP_471306.1| OSJNBb0026I12.3 [Oryza
sativa (japonica cultivar-group)]
Length = 589
Score = 647 bits (1668), Expect = 0.0
Identities = 316/478 (66%), Positives = 386/478 (80%), Gaps = 5/478 (1%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
NKAT+KD+FPLP ID+MLERLA HS FC+LDGYSG+ QIPIHP DQ KTTFTCP+GT+AY
Sbjct: 30 NKATKKDNFPLPVIDEMLERLANHSLFCFLDGYSGYHQIPIHPKDQCKTTFTCPYGTYAY 89
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
RRM FGLCNAPA+FQRCMMSIFSD +E IMEVFMDDFS++G FD CL NL+KV +RC++
Sbjct: 90 RRMSFGLCNAPASFQRCMMSIFSDMIEAIMEVFMDDFSLYGKTFDHCLQNLDKVFQRCQE 149
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
+LVLNWEKCHFMV EGIVLGH V +RGIEVDRAKIE+I ++ PP ++K IR+FLGHAGF
Sbjct: 150 KDLVLNWEKCHFMVHEGIVLGHRVSERGIEVDRAKIEVIDQLPPPVNIKGIRNFLGHAGF 209
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
+RRFIK+FS+I +PLT+LL KDA F FDD CL++F LK+AL++A IIQPPD LPFEIM
Sbjct: 210 HRRFIKEFSTIARPLTNLLAKDAPFEFDDVCLKSFKTLKKALVSALIIQPPDGMLPFEIM 269
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQY-LV 299
CDASD+ VGAVLGQ DKK+HAI YAS+TL GAQ NYATTEKELLAVV+AIDKFR+ LV
Sbjct: 270 CDASDFIVGAVLGQTKDKKLHAICYASETLAGAQSNYATTEKELLAVVFAIDKFRRSDLV 329
Query: 300 GSKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRET 359
G+K+IVYT+H+A+KYLL KKDAKPRL+RWI LLQEFDLEIKDKKGVEN VADHLSRL+ T
Sbjct: 330 GAKVIVYTEHAALKYLLTKKDAKPRLLRWIPLLQEFDLEIKDKKGVENSVADHLSRLQLT 389
Query: 360 NKDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYW 419
N E P++ DD L + +D PWYA+ VN++ + +P N Q+K K+ + + W
Sbjct: 390 NMQEPPINYFLQDDMLMAVRNSD-PWYANIVNYMVSKYVPQGEN-QRKLKY--ESHCHIW 445
Query: 420 DEPYLFRRGSDGIFRRCIPENEVSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSL 477
DEPYL+R S+G+ RRC+P+ E I+ CH++ Y GH +T KI S F+WP++
Sbjct: 446 DEPYLYRVCSNGLLRRCVPKEEGFKIIERCHAAPYRGHYGAFRTQAKIWQSRFFWPTM 503
Score = 79.7 bits (195), Expect = 4e-13
Identities = 35/57 (61%), Positives = 44/57 (76%)
Query: 589 FEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALW 645
F +LL+K+ +H IATPYHPQT+GQ E+SN+QIK IL+KTV T W +KL DALW
Sbjct: 505 FRELLRKMNAKHNIATPYHPQTNGQAEMSNKQIKNILQKTVHEMGTGWKDKLPDALW 561
>gb|AAT38730.1| putative reverse transcriptase [Solanum demissum]
Length = 1334
Score = 620 bits (1599), Expect = e-176
Identities = 359/779 (46%), Positives = 450/779 (57%), Gaps = 167/779 (21%)
Query: 37 FQIPIHPNDQEKTTFTCPFGTFAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDD 96
F IH +D T +T FA++ MPFGLCNAP TFQRCMMSIFSD VE +EV MDD
Sbjct: 716 FSYAIHRSDVRPTCWT-----FAFKWMPFGLCNAPVTFQRCMMSIFSDIVEDTIEVLMDD 770
Query: 97 FSVHGSNFDDCLTNLEKVLERCEQVNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKI 156
FSV G +FD L +L +VL+R E+ NLVLNWEKCHF+V+EGIVLGH + ++ IEVDRAK+
Sbjct: 771 FSVVGESFDRSLDHLAEVLKRSEECNLVLNWEKCHFIVKEGIVLGHQISEKRIEVDRAKV 830
Query: 157 EIIKKMLPPTSVKEIRSFLGHAGFYRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFC 216
E+IKK+ PP S+K +RSFLGHAGFYRRFIKDFS I PL L K+ F FDD+ L+AF
Sbjct: 831 EVIKKLPPPISIKGVRSFLGHAGFYRRFIKDFSKIAHPLCKLPGKECRFVFDDATLRAFA 890
Query: 217 RLKEALITAPIIQPPDWNLPFEIMCDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVN 276
LKE L + PII PDW PF+++CDAS A+G VLGQ SK L+ AQ N
Sbjct: 891 ELKEKLASVPIIISPDWGQPFKVICDASGVALGVVLGQ------------SKALNVAQKN 938
Query: 277 YATTEKELLAVVYAIDKFRQYLVGSKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFD 336
Y TE ELL VV A +KFR Y++G+K+IV+T HSA+ YL+ KK KPRLIR +LLLQ FD
Sbjct: 939 YTVTEHELLTVVLAFEKFRSYILGTKVIVHTYHSALGYLMAKKYTKPRLIRLVLLLQGFD 998
Query: 337 LEIKDKKGVENVVADHLSRLRETNK----DELPLDDSFPDDQLFLLAQTDAPWYADFVNF 392
+KD+KG +N VADHLSRL E D + ++D+F DD + + PW+ADF N+
Sbjct: 999 FVVKDRKGTKNQVADHLSRLEEDAMLKLGDRVEINDAFLDDHILAASHDLIPWFADFANY 1058
Query: 393 LAAGVLPPELNYQQKKKFFNDLKHYYWDEPYLFRRGSDGIFRRCIPENEVSSILTHCHSS 452
LA+ D PYL+ +DGI RRC+PE E+ SIL H
Sbjct: 1059 LAS------------------------DLPYLYSSCTDGIIRRCVPEVEMLSILEAGHLL 1094
Query: 453 SYGGHASTQKTSFKILHSGFWWPSLFKDVHLFISKCDKCQRTGSITKRNEMPLNNILEVE 512
+GGH HSG I+KR E+ +N IL +E
Sbjct: 1095 LFGGH-----------HSG-------------------------ISKRQELSMNPILVME 1118
Query: 513 IFDVWGIDFMGPFPSSFGNQYILVAVDYVSKWVEAIASPTNDAQVVIKMFKKVIFPRFGV 572
+FDVWG DFMGPF SS G +YILVAVDYVSK VEAIA N + V KK IF RFG
Sbjct: 1119 LFDVWGTDFMGPFVSSHGMKYILVAVDYVSKLVEAIALSNNKVKSVTGFLKKNIFSRFGT 1178
Query: 573 PRVVISDGGSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTS 632
PR +ISDGGSHF ++ F+ LL K GV + +ATPYHPQ+SGQV+VSNR+IK
Sbjct: 1179 PRAIISDGGSHFCNKLFKALLDKYGVLYNVATPYHPQSSGQVKVSNREIK---------- 1228
Query: 633 RTDWSNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCHLPVELEHKAYWAIRNLNLDPNLA 692
KLDDALWAYRTA+KTPI
Sbjct: 1229 ------KLDDALWAYRTAFKTPI------------------------------------- 1245
Query: 693 GDKRKLQLNELEELRMDAYENARIYKERTKTWHDKKIIKRHFKSGDLVLLFNSRLKLFPG 752
+N L+E R+ AYE++ +YKE+ K +HD+KI K F
Sbjct: 1246 ----VSDMNALDEFRLRAYESSTLYKEKMKKYHDQKIKKCEF------------------ 1283
Query: 753 KLRSRWSGPFQVRTVYPYGAIEIFSEETGSFTVNGQRLKIYNTGE--VNEVVADFTLSD 809
V V+P+GA+E+ + + VNG+R+K+Y E V EVV + L D
Sbjct: 1284 ---------VVVTQVFPHGAVELENNKGARIKVNGKRIKVYMGKEENVQEVVEAYYLDD 1333
>gb|AAD23707.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411232|pir||G84476 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 466
Score = 594 bits (1532), Expect = e-168
Identities = 278/427 (65%), Positives = 342/427 (79%), Gaps = 1/427 (0%)
Query: 383 APWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWDEPYLFRRGSDGIFRRCIPENEV 442
+PWYAD VN+LA G+ PP L ++K FF D+ HYYWDEPYL+ D I+R + E+EV
Sbjct: 37 SPWYADHVNYLACGIEPPNLTSYERKNFFRDIHHYYWDEPYLYTLCKDKIYRSYVSEDEV 96
Query: 443 SSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKDVHLFISKCDKCQRTGSITKRNE 502
IL HCH S+YGGH +T KT KIL +GFWWP++FKD F+SKCD CQR G+I++RNE
Sbjct: 97 EGILLHCHDSAYGGHFATFKTVSKILQAGFWWPTMFKDAQEFVSKCDSCQRKGNISRRNE 156
Query: 503 MPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDYVSKWVEAIASPTNDAQVVIKMF 562
MP N ILEV+IFDVWGIDFMGPFPSS+GN+YILV VDYVSKWVEAIASPTNDA+VV+K+F
Sbjct: 157 MPQNPILEVDIFDVWGIDFMGPFPSSYGNKYILVVVDYVSKWVEAIASPTNDAKVVLKLF 216
Query: 563 KKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIK 622
K +IFPRFGV VVISDGG HFI++ FE LL+K GV+HK+ATPYHPQTSGQVE+SNR+IK
Sbjct: 217 KTIIFPRFGVSWVVISDGGKHFINKVFENLLKKHGVKHKVATPYHPQTSGQVEISNREIK 276
Query: 623 AILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCHLPVELEHKAYWAI 682
ILEKTV +R DWS KLDDALWAY+TA+KTPIG TPF L+ KSCHL VELE+KA WA+
Sbjct: 277 TILEKTVGITRKDWSTKLDDALWAYKTAFKTPIGTTPFNLLCVKSCHLHVELEYKAMWAV 336
Query: 683 RNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKERTKTWHDKKIIKRHFKSGDLVLL 742
+ LN D A +KR +QL+EL+E+R++AYE+++IYKERTK +HDKKII + F+ GD VLL
Sbjct: 337 KLLNFDIKTAEEKRLIQLSELDEIRLEAYESSKIYKERTKLFHDKKIITKDFQVGDQVLL 396
Query: 743 FNSRLKLFPGKLRSRWSGPFQVRTVYPYGAIEIFSEETGSFTVNGQRLKIYNTGEVNEVV 802
FNSRLK+FPGKL+SRWSGPF + V PYGA+ + + ++G FTVNGQRLK Y ++ V
Sbjct: 397 FNSRLKIFPGKLKSRWSGPFCITEVRPYGAVTL-AGKSGVFTVNGQRLKKYLANQILPEV 455
Query: 803 ADFTLSD 809
L +
Sbjct: 456 TSIHLQE 462
>pir||T12085 reverse transcriptase homolog - fava bean (fragment)
gi|2522228|dbj|BAA22787.1| reverse transcriptase-like
protein [Vicia faba]
Length = 407
Score = 568 bits (1464), Expect = e-160
Identities = 269/388 (69%), Positives = 321/388 (82%), Gaps = 4/388 (1%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N ATRKDHFPLPFIDQMLERLA H ++C+LDGYSG+ QI + P DQEKTTFTCPFG F+Y
Sbjct: 9 NLATRKDHFPLPFIDQMLERLADHEYYCFLDGYSGYNQIAVVPEDQEKTTFTCPFGIFSY 68
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
RR+PFGLCNAPATFQRCM SIF+D +EK MEVFMDDFSV G +FD+CL+NL VLERC++
Sbjct: 69 RRIPFGLCNAPATFQRCMQSIFADMLEKYMEVFMDDFSVFGKSFDNCLSNLALVLERCQE 128
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
NL+LNWEKCHFMVREGIVLGH + +GIEVD+AKIE+I K+ PPT+ K IRSFLGH GF
Sbjct: 129 SNLILNWEKCHFMVREGIVLGHKISYKGIEVDQAKIEVISKLHPPTNEKGIRSFLGHVGF 188
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRFI+DFS I KPLT+LL+KD DF FD C+ AF LK L++API+ PDW LPFEIM
Sbjct: 189 YRRFIRDFSKIEKPLTTLLVKDKDFVFDKECVVAFETLKGKLVSAPIVVAPDWYLPFEIM 248
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
CDASD AVGAVLGQR +K++H IYYAS L+ AQ+NYATTEKELL +VYA DKFRQY++G
Sbjct: 249 CDASDIAVGAVLGQRREKRLHVIYYASHVLNPAQMNYATTEKELLVMVYAFDKFRQYMLG 308
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLR--E 358
SK+IVYTDH+A+KYL +K+D+KPRL+RWILLLQEFD+EI+DK+G EN VADHLSR+ E
Sbjct: 309 SKVIVYTDHAALKYLFSKQDSKPRLLRWILLLQEFDVEIRDKRGCENTVADHLSRMSHIE 368
Query: 359 TNKDELPLDDSFPDDQLFLLAQTDAPWY 386
K + P+ D F D+ +L PW+
Sbjct: 369 ETKVKQPIKDEFADEH--ILVVIGVPWF 394
>emb|CAD39928.2| OSJNBa0091C12.6 [Oryza sativa (japonica cultivar-group)]
gi|50921841|ref|XP_471281.1| OSJNBa0091C12.6 [Oryza
sativa (japonica cultivar-group)]
Length = 781
Score = 530 bits (1365), Expect = e-149
Identities = 267/480 (55%), Positives = 336/480 (69%), Gaps = 56/480 (11%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
NKAT+KDHF LPFID+MLERLA HS FC+LDGYS +Y
Sbjct: 356 NKATKKDHFSLPFIDEMLERLANHSFFCFLDGYS------------------------SY 391
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
++P ++ DD ++G F+ CL NL+KVL+RC++
Sbjct: 392 HQIP---------------------------IYPDD-QIYGKTFNHCLENLDKVLQRCQE 423
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
+LVLNWEK HFMVREGIVLGH + +RG+EVDRAKIE+I+++ PP + +RSFLGHAGF
Sbjct: 424 KDLVLNWEKYHFMVREGIVLGHQISERGVEVDRAKIEVIRQLPPPVNDMGVRSFLGHAGF 483
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRFIKDFS I +PLT+LL D FDD C+++F LKE+LI+APIIQP DW+L FEIM
Sbjct: 484 YRRFIKDFSKIARPLTALLANDVPVDFDDECMKSFKILKESLISAPIIQPSDWSLLFEIM 543
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
CDASD+AVGAVLGQ D+K HAI YASKTL GAQ+NYATTEKELLAVV+AI+KFR YLVG
Sbjct: 544 CDASDFAVGAVLGQTKDRKHHAITYASKTLTGAQLNYATTEKELLAVVFAIEKFRSYLVG 603
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
+K++VYTDH+A+KYLL KKDAKPR+IRWILLLQEFD+EI DKKGVEN VADHLSR++ TN
Sbjct: 604 AKVVVYTDHAALKYLLTKKDAKPRVIRWILLLQEFDIEIMDKKGVENYVADHLSRMQITN 663
Query: 361 KDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWD 420
+L ++D DD + +D PWYA VNF+A G +PP + KK+ + + + WD
Sbjct: 664 MQKLLINDYLRDDMRLKVIDSD-PWYATIVNFMATGHVPP---VENKKRLIYESRRHLWD 719
Query: 421 EPYLFRRGSDGIFRRCIPENEVSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKD 480
PYLFR SDG+ R C+ +E I+ CH++ YGGH +T KI SGF+WPS++ D
Sbjct: 720 APYLFRVCSDGLLRICVSTDEGIMIIEKCHAAPYGGHYGAFRTHAKIWQSGFFWPSMYDD 779
>gb|AAG52026.1| polyprotein, putative; 77260-80472 [Arabidopsis thaliana]
gi|25405064|pir||B96492 probable polyprotein,
77260-80472 [imported] - Arabidopsis thaliana
Length = 884
Score = 524 bits (1349), Expect = e-147
Identities = 250/368 (67%), Positives = 301/368 (80%), Gaps = 14/368 (3%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N ATRK+HFPL FIDQ+LERL+ H ++C LDGYSGFFQIPIHP+DQEKT FTCP+GTFAY
Sbjct: 518 NAATRKNHFPLQFIDQLLERLSNHKYYCVLDGYSGFFQIPIHPDDQEKTMFTCPYGTFAY 577
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
RMPFGLCNAPA F+RCMMSIF+D +E +EVFMDDFSV+GS+F+ CL NL KVL RCE+
Sbjct: 578 SRMPFGLCNAPAIFERCMMSIFTDMIENFIEVFMDDFSVYGSSFEACLENLRKVLARCEE 637
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
NLVLNWEKCHFMV+EGIVLGH V GIEV++AKIE++ + SV
Sbjct: 638 KNLVLNWEKCHFMVQEGIVLGHKVSGAGIEVNKAKIEVMTSLQALDSVN----------- 686
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
RF+KDFS I +PLT+LL KD F F+ C AF ++K AL++API+QP DWNLPFEIM
Sbjct: 687 -LRFVKDFSKIARPLTALLCKDVKFDFNSECHDAFNQIKNALVSAPIVQPLDWNLPFEIM 745
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
CDA DYAVGAVLGQR K+HAI+YAS+TLD AQ N ATTEKELLAVV+A DKFR YLVG
Sbjct: 746 CDAGDYAVGAVLGQRKGNKLHAIHYASRTLDDAQRNNATTEKELLAVVFAFDKFRSYLVG 805
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
SK+IV+TDHSA+KYL+ KKDAKPRL+RWILLLQEFD+E++D+KG+EN VADHLSR++
Sbjct: 806 SKVIVHTDHSALKYLMQKKDAKPRLLRWILLLQEFDIEVRDRKGIENGVADHLSRIKV-- 863
Query: 361 KDELPLDD 368
+D++P++D
Sbjct: 864 EDDIPIND 871
>emb|CAD40178.2| OSJNBa0061A09.17 [Oryza sativa (japonica cultivar-group)]
gi|50921885|ref|XP_471303.1| OSJNBa0061A09.17 [Oryza
sativa (japonica cultivar-group)]
Length = 430
Score = 522 bits (1345), Expect = e-146
Identities = 254/444 (57%), Positives = 318/444 (71%), Gaps = 15/444 (3%)
Query: 240 MCDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLV 299
MCDAS++AVGAVLGQ D+K HAI YASKTL GAQ+NY+TTEKELLAVV
Sbjct: 1 MCDASNFAVGAVLGQTKDRKQHAIAYASKTLTGAQLNYSTTEKELLAVV----------- 49
Query: 300 GSKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRET 359
G+K++VYTDH+A+KYLL KKDAKPRLIRWIL+LQEFD+EI +KKG+EN VADHLSR++ T
Sbjct: 50 GAKVVVYTDHAALKYLLTKKDAKPRLIRWILILQEFDIEINNKKGIENSVADHLSRMQIT 109
Query: 360 NKDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYW 419
N EL ++D DD L + +D PWYA VNF+ A +PP N KK+ + + W
Sbjct: 110 NMQELSINDYLRDDMLLKVTDSD-PWYAPIVNFMVAWHVPPGEN---KKRLSYESRKRLW 165
Query: 420 DEPYLFRRGSDGIFRRCIPENEVSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFK 479
D PYL+R SD + RRC+P +E I+ C + YG H +T KI SGF+WP+++
Sbjct: 166 DAPYLYRVCSDSLLRRCVPADEGMEIIEKCRVAPYGSHYGAFRTHAKIWQSGFFWPTMYG 225
Query: 480 DVHLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVD 539
D FI +C CQ+ G IT ++ MPL L+VE+FDVWGIDFMGPFP + +YILVAVD
Sbjct: 226 DTKEFIRRCTSCQKHGGITAQDAMPLTYNLQVELFDVWGIDFMGPFPKFYDCEYILVAVD 285
Query: 540 YVSKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVR 599
YVSKWVEA+ + + +MF ++IFP FG PR VISDGGSHFI + F+ LQ+LG +
Sbjct: 286 YVSKWVEAMPCRAANTKHAHRMFDEIIFPCFGTPRTVISDGGSHFIDKTFQNFLQELGAQ 345
Query: 600 HKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTP 659
H I TPYHP+T GQ E N+QI IL+KTV+ W NKL +ALWAYRT Y PIGM+P
Sbjct: 346 HNIVTPYHPKTGGQAETRNKQIMNILQKTVNEMGKAWKNKLPNALWAYRTTYNMPIGMSP 405
Query: 660 FKLVYGKSCHLPVELEHKAYWAIR 683
++LVYGK+CHLPVELEHKA+WAIR
Sbjct: 406 YQLVYGKTCHLPVELEHKAHWAIR 429
>gb|AAM15254.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411471|pir||B84505 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 930
Score = 489 bits (1259), Expect = e-136
Identities = 228/364 (62%), Positives = 282/364 (76%), Gaps = 6/364 (1%)
Query: 380 QTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWDEPYLFRRGSDGIFRRCIPE 439
+ D PWYAD VN+LAA V P KK+F +++ Y WDEPYL++ DGI+RRCI
Sbjct: 133 EKDYPWYADIVNYLAADVEPDNFTDYNKKRFLREIRRYQWDEPYLYKHSYDGIYRRCIAA 192
Query: 440 NEVSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKDVHLFISKCDKCQRTGSITK 499
EV SIL+HCHSSSYGGH +T KT K+L + FWWP++F+D FIS+CD CQR G I+K
Sbjct: 193 TEVPSILSHCHSSSYGGHFATFKTVSKVLQADFWWPTMFRDTQKFISQCDPCQRRGKISK 252
Query: 500 RNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDYVSKWVEAIASPTNDAQVVI 559
RNEMP N LEVE+FD WGIDFMGPFP S N YILV VDYVSKWVEAIAS ND+ VV+
Sbjct: 253 RNEMPPNFRLEVEVFDRWGIDFMGPFPPSNKNLYILVDVDYVSKWVEAIASLKNDSAVVM 312
Query: 560 KMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNR 619
K+FK +IFPRFGVPR+VISDG HFI++ EKLL + GV+H++ATPYHPQTSGQVEVSNR
Sbjct: 313 KLFKSIIFPRFGVPRIVISDGDKHFINKILEKLLLQYGVQHRVATPYHPQTSGQVEVSNR 372
Query: 620 QIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCHLPVELEHKAY 679
QIK ILEKTV ++ +WS KL DALWAY+TA+KTP+G TPF L+YGK+CHLPVELEHKA
Sbjct: 373 QIKEILEKTVGKAKKEWSYKLYDALWAYKTAFKTPLGTTPFHLLYGKACHLPVELEHKAA 432
Query: 680 WAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKERTKTWHDKKIIKRHFKSGDL 739
WA++ +N D AG+ +EL+E+R+ AY+N+++YKERTK +HDKKI+ R F+ D
Sbjct: 433 WAVKMMNFDIKSAGE------SELDEIRIHAYDNSKLYKERTKAYHDKKILTRTFEPNDQ 486
Query: 740 VLLF 743
+L F
Sbjct: 487 ILRF 490
Score = 83.6 bits (205), Expect = 2e-14
Identities = 37/63 (58%), Positives = 53/63 (83%), Gaps = 2/63 (3%)
Query: 316 LNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETNKDELPLDDSFPDDQL 375
+ KKDAKPRL+ WILLLQEFD+E++DKKGVEN VADHLSR+R D++P++D P++ +
Sbjct: 1 MQKKDAKPRLLIWILLLQEFDIEVRDKKGVENGVADHLSRIR--IDDDVPINDFLPEENI 58
Query: 376 FLL 378
+++
Sbjct: 59 YMI 61
>pir||D84513 probable retroelement pol polyprotein [imported] - Arabidopsis
thaliana
Length = 841
Score = 471 bits (1212), Expect = e-131
Identities = 246/435 (56%), Positives = 300/435 (68%), Gaps = 77/435 (17%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N ATRKD+FPL FIDQMLERL+ ++C+LDGY GFFQI IHP+DQEKTTFTCP+GTFAY
Sbjct: 453 NSATRKDNFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAY 512
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
RRMPFGLCNAPATFQ CM IFSD +E MEVF+DDF VL+RCE
Sbjct: 513 RRMPFGLCNAPATFQHCMKYIFSDMIEDFMEVFIDDF---------------LVLQRCED 557
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
+LVLNWEK HFMVR+GIVLGH + ++G+EVDRAKIEI++ FLGHAGF
Sbjct: 558 KHLVLNWEKSHFMVRDGIVLGHKISEKGVEVDRAKIEIMR-------------FLGHAGF 604
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRFIKDFS I +P T LL K+ FDD+CLQAF +KE+L++A I+QPP+W LPFE++
Sbjct: 605 YRRFIKDFSKIARPCTQLLCKEQKSEFDDTCLQAFNIVKESLVSALIVQPPEWELPFEVI 664
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
CDASDY VGAVLGQR DKK+HAIYYAS+TLDGAQV
Sbjct: 665 CDASDYVVGAVLGQRKDKKLHAIYYASRTLDGAQV------------------------- 699
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
IV+T H+A++YLL+KKDAKPRL+RWILLLQ+FDLEIKDKKG+EN VAD+LSRLR
Sbjct: 700 ---IVHTVHAALRYLLSKKDAKPRLLRWILLLQDFDLEIKDKKGIENEVADNLSRLRVQE 756
Query: 361 ----KDELP------LDDSFPDD---------QLFLL--AQTDAPWYADFVNFLAAGVLP 399
+D LP ++D + D+ +L L +++ PWYADF N+L+ V P
Sbjct: 757 EVLMRDILPGENLASIEDCYMDEVGRLRVSTLELMTLHTGESNLPWYADFANYLSCEVPP 816
Query: 400 PELNYQQKKKFFNDL 414
P+ KKK ++
Sbjct: 817 PDFTGYFKKKLLKEV 831
>gb|AAM15221.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411366|pir||D84493 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 622
Score = 466 bits (1198), Expect = e-129
Identities = 231/382 (60%), Positives = 288/382 (74%), Gaps = 27/382 (7%)
Query: 46 QEKTTFTCPFGTFAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFD 105
++KTTFTCP GTFAY+RM FGLCNAP TFQR M SIFSDF+E+IMEVFMDDFS F
Sbjct: 163 KKKTTFTCPNGTFAYKRMSFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDDFS----GFS 218
Query: 106 DCLTNLEKVLERCEQVNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPP 165
CL NL +VLERCE+ NLVLNWEKCHFMV EGIVLGH + +GIEVD+AKI+++ ++ PP
Sbjct: 219 SCLLNLCRVLERCEETNLVLNWEKCHFMVHEGIVLGHKISGKGIEVDKAKIDVMIQLQPP 278
Query: 166 TSVKEIRSFLGHAGFYRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITA 225
+VK+IRSFLGHA FYRRFIKDFS I +PLT LL K+ +F FD+ CL+AF +KE L++A
Sbjct: 279 KTVKDIRSFLGHAEFYRRFIKDFSKIARPLTRLLCKETEFNFDEDCLKAFHLIKETLVSA 338
Query: 226 PIIQPPDWNLPFEIMCDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELL 285
PI Q P+W+ PFEIMCDA DYAVGAVL Q+ D K+H IYYAS+T+D AQ YAT EKELL
Sbjct: 339 PIFQAPNWDHPFEIMCDAFDYAVGAVLDQKIDDKLHVIYYASRTMDEAQTRYATIEKELL 398
Query: 286 AVVYAIDKFRQYLVGSKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGV 345
AVV+A +K R YLVG K+ VY DH+A++++ KK+ K RL+RWILLLQEFD+EI DKKGV
Sbjct: 399 AVVFAFEKIRSYLVGFKVKVYIDHAALRHIYAKKETKSRLLRWILLLQEFDMEIIDKKGV 458
Query: 346 ENVVADHLSRLRETNKDELPLDDSFPDDQLFL-------------------LAQTDAPWY 386
EN VADHLSR+R +D +P+DD+ P++QL + + PWY
Sbjct: 459 ENGVADHLSRMR--IEDSVPIDDTMPEEQLMFYDLVNKSFDTKDMPEEADAVEEEKLPWY 516
Query: 387 ADFVNFLAAGVLPPELNYQQKK 408
AD VN+L +G + E++ +Q K
Sbjct: 517 ADLVNYLTSGQV--EVSNRQMK 536
Score = 140 bits (354), Expect = 1e-31
Identities = 66/98 (67%), Positives = 80/98 (81%)
Query: 610 TSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCH 669
TSGQVEVSNRQ+K IL K V S+ DWS KLD+ LWAYRTAYKTPIG TPF+++YGKSCH
Sbjct: 524 TSGQVEVSNRQMKDILTKVVGVSKRDWSTKLDETLWAYRTAYKTPIGRTPFQMLYGKSCH 583
Query: 670 LPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELR 707
LPVE+E+KA WA + LNL+ A +KR + L+ELEE+R
Sbjct: 584 LPVEVEYKAIWATKLLNLEIKGAQEKRPIDLHELEEIR 621
>gb|AAM94940.1| conserved hypothetical protein [Arabidopsis thaliana]
Length = 367
Score = 444 bits (1141), Expect = e-123
Identities = 213/317 (67%), Positives = 262/317 (82%), Gaps = 1/317 (0%)
Query: 482 HLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDYV 541
H+ + D CQR G+I++RNEMP N ILEV+IFDVWGIDFMGPFPSS+GN+YILVAVDYV
Sbjct: 37 HVNYLEVDSCQRKGNISRRNEMPQNPILEVDIFDVWGIDFMGPFPSSYGNKYILVAVDYV 96
Query: 542 SKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRHK 601
S VEAIASPTNDA+V++K+FK +IFPRFGV RVVISDGG HFI++ FE LL+K GV+HK
Sbjct: 97 SNRVEAIASPTNDAKVMLKLFKTIIFPRFGVLRVVISDGGKHFINKVFENLLKKYGVKHK 156
Query: 602 IATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPFK 661
+ TPYHPQTS QVE+SNR+IK ILEKTV T+R DWS KLDDALW RTA+KTPIG T F
Sbjct: 157 VTTPYHPQTSEQVEISNREIKTILEKTVGTTRKDWSAKLDDALWDNRTAFKTPIGTTLFN 216
Query: 662 LVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKERT 721
L+YGKSCHLPVELE+KA WA++ LN D +KR +QL++L+E+R++AYE+++IYKERT
Sbjct: 217 LLYGKSCHLPVELEYKAMWAVKLLNFDIKTTEEKRLIQLSDLDEIRLEAYESSKIYKERT 276
Query: 722 KTWHDKKIIKRHFKSGDLVLLFNSRLKLFPGKLRSRWSGPFQVRTVYPYGAIEIFSEETG 781
K +HDKKII + F+ GD VLLFNS LK FPGKL+SRWSGPF + V PYGA+ + + ++G
Sbjct: 277 KLFHDKKIITKDFQVGDQVLLFNSLLKFFPGKLKSRWSGPFCITEVRPYGAVTL-AGKSG 335
Query: 782 SFTVNGQRLKIYNTGEV 798
FTVNGQRLK Y ++
Sbjct: 336 DFTVNGQRLKKYLADQI 352
>emb|CAD39882.2| OSJNBb0067G11.5 [Oryza sativa (japonica cultivar-group)]
gi|50922247|ref|XP_471484.1| OSJNBb0067G11.5 [Oryza
sativa (japonica cultivar-group)]
Length = 791
Score = 433 bits (1114), Expect = e-119
Identities = 203/273 (74%), Positives = 234/273 (85%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
NKAT+KDHFPLPFID+MLERLA HS FC+LDGYSG+ QIPIHP DQ KTTFTCP+GT+AY
Sbjct: 519 NKATKKDHFPLPFIDEMLERLANHSFFCFLDGYSGYHQIPIHPEDQSKTTFTCPYGTYAY 578
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
RRM FGLCN PA+FQRCMMSIFSD +E IMEVFMDDFSV+G CL NL+KVL+RC++
Sbjct: 579 RRMSFGLCNTPASFQRCMMSIFSDMIEDIMEVFMDDFSVYGKTLGHCLQNLDKVLQRCQE 638
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
+LVLN EKCHFMVREGIVLGH V +RG+EVDRAKI++I ++ PP ++K I SF GHAGF
Sbjct: 639 KDLVLNREKCHFMVREGIVLGHRVSERGVEVDRAKIDVIDQLPPPMNIKGIHSFFGHAGF 698
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRFIKDFS+I +PLT+LL KDA FDD CL++F LK+AL++APIIQPPDW LPFEIM
Sbjct: 699 YRRFIKDFSTIARPLTNLLAKDAPIEFDDVCLKSFEILKKALVSAPIIQPPDWTLPFEIM 758
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGA 273
CDASD+AVGAVLGQ DKK HAI YASKTL GA
Sbjct: 759 CDASDFAVGAVLGQTKDKKHHAICYASKTLTGA 791
>pir||C84500 probable retroelement pol polyprotein [imported] - Arabidopsis
thaliana
Length = 976
Score = 429 bits (1103), Expect = e-118
Identities = 202/304 (66%), Positives = 254/304 (83%), Gaps = 2/304 (0%)
Query: 75 QRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQVNLVLNWEKCHFMV 134
+R MMSIF+D +E IMEVFMDDFSV+GS F+DCL NL KVL RCE+ +LVLNWEKCHF V
Sbjct: 79 ERGMMSIFTDMIEDIMEVFMDDFSVYGSLFEDCLENLYKVLARCEEKHLVLNWEKCHFRV 138
Query: 135 REGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGFYRRFIKDFSSITKP 194
++GIVLGH + + GIE DRAKIE++ + ++K +RSFLGHAGFYRRFIKDFS I +P
Sbjct: 139 QDGIVLGHRISEYGIEADRAKIEVMTSLQALDNLKAVRSFLGHAGFYRRFIKDFSKIARP 198
Query: 195 LTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIMCDASDYAVGAVLGQ 254
LTSLL K+ F F C AF ++K+ALI+API+QPPDW+LPFE+MCDASD+AVGAVLGQ
Sbjct: 199 LTSLLCKEVKFEFTQECHDAFQQIKQALISAPIVQPPDWDLPFEVMCDASDFAVGAVLGQ 258
Query: 255 RNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVGSKIIVYTDHSAIKY 314
R DKK+HAIYYAS+TLD A+ NYATTEKE LAVV+A +KFR YLVG K+IV+TDH+A+KY
Sbjct: 259 RKDKKLHAIYYASRTLDDAKRNYATTEKEFLAVVFAFEKFRSYLVGLKVIVHTDHAALKY 318
Query: 315 LLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETNKDELPLDDSFPDDQ 374
L+ KDAKPRL+RWILLLQEFD+E++DKKGVE VADHLSR+R D++P++D P++
Sbjct: 319 LMQNKDAKPRLLRWILLLQEFDIEVRDKKGVEKCVADHLSRIR--IDDDVPINDFLPEEN 376
Query: 375 LFLL 378
++++
Sbjct: 377 IYMI 380
Score = 346 bits (887), Expect = 2e-93
Identities = 194/420 (46%), Positives = 255/420 (60%), Gaps = 54/420 (12%)
Query: 380 QTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWDEPYLFRRGSDGIFRRCIPE 439
+ D PWYAD V +L A V KK+F +++ YYWD+PYL
Sbjct: 455 EKDYPWYADIVIYLGADVELDNFIDYNKKRFLREIRRYYWDKPYL--------------- 499
Query: 440 NEVSSILT------HCHSSSYGGHASTQKTSFKILHSGFWWPSLFKDVHLFISKCDKCQR 493
+S +L HC + S Q +S ++L + + S ++H+ D CQR
Sbjct: 500 -PISIVLMEFIGEMHCCNRD-----SIQSSSSRLLVA--YNVSGCSEIHI---ASDPCQR 548
Query: 494 TGSITKRNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDYVSKWVEAIASPTN 553
G I+ NEMP ILEV++FD WGI+FMGP P S N YILV VDYVSKWVEAIASP N
Sbjct: 549 RGKISNCNEMPQKFILEVKVFDCWGINFMGPIPPSNKNLYILVVVDYVSKWVEAIASPKN 608
Query: 554 DAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQ 613
D+ VV+K+FK +IFP FGVPR+VISDGG HFI++ KLL + GV+H++ATPYHPQTSGQ
Sbjct: 609 DSAVVMKLFKCIIFPHFGVPRIVISDGGKHFINKILTKLLLQYGVQHRVATPYHPQTSGQ 668
Query: 614 VEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCHLPVE 673
VEVSNRQIK ILEKTV A+KTP+G TPF L+YGK+CHLPVE
Sbjct: 669 VEVSNRQIKEILEKTV--------------------AFKTPLGTTPFHLLYGKACHLPVE 708
Query: 674 LEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKERTKTWHDKKIIKRH 733
LEHKA W ++ LN D AG++R +QLNEL+E+++ AY+N+++YKERTK +HDKKI+ R
Sbjct: 709 LEHKAAWTVKMLNFDIKSAGERRLIQLNELDEIQIHAYDNSKLYKERTKAYHDKKILTRT 768
Query: 734 FKSGDLVLLFNSRLKLFPGKLRSRWSGPFQVRTVYPYGAIEIFSEE--TGSFTVNGQRLK 791
F+ D K F G+ + + ++ + I EE T FT++ LK
Sbjct: 769 FEPKDQKKKKTRETKPFKGRGKKSERVGSLLIPIFEHFRIRFEGEEVNTTRFTMDESYLK 828
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.140 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,431,075,439
Number of Sequences: 2540612
Number of extensions: 62867201
Number of successful extensions: 177867
Number of sequences better than 10.0: 11806
Number of HSP's better than 10.0 without gapping: 4809
Number of HSP's successfully gapped in prelim test: 6997
Number of HSP's that attempted gapping in prelim test: 160778
Number of HSP's gapped (non-prelim): 16455
length of query: 811
length of database: 863,360,394
effective HSP length: 136
effective length of query: 675
effective length of database: 517,837,162
effective search space: 349540084350
effective search space used: 349540084350
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)
Medicago: description of AC146705.12